Query psy17340
Match_columns 200
No_of_seqs 90 out of 101
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 19:47:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qrjb1 a.28.3.1 (B:131-214) H 26.8 13 0.00093 25.4 1.6 21 162-182 11-31 (84)
2 d1a8oa_ a.28.3.1 (A:) HIV caps 25.3 13 0.00097 24.2 1.4 20 162-181 8-27 (70)
3 d1r9oa_ a.104.1.1 (A:) Mammali 20.1 17 0.0012 27.1 1.3 13 110-124 1-13 (467)
4 d1d1da1 a.28.3.1 (A:151-230) R 18.8 22 0.0016 24.0 1.6 20 162-181 11-30 (80)
5 d2eiaa1 a.28.3.1 (A:148-222) E 17.9 28 0.002 22.9 1.9 20 162-181 11-30 (75)
6 d1fx0b1 a.69.1.1 (B:378-485) F 17.6 32 0.0023 24.7 2.2 35 148-193 33-67 (108)
7 d1ldna2 d.162.1.1 (A:163-330) 17.1 26 0.0019 24.2 1.6 25 150-180 143-167 (168)
8 d2f2ab1 a.182.1.2 (B:294-400) 15.3 55 0.004 21.9 3.0 25 149-173 14-38 (107)
9 d1ew4a_ d.82.2.1 (A:) CyaY {Es 13.0 74 0.0054 21.8 3.2 35 160-194 1-38 (106)
10 d1c8ba_ c.56.1.2 (A:) Germinat 11.4 48 0.0035 28.3 2.0 36 147-182 307-355 (371)
No 1
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=26.79 E-value=13 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred chHHHHHHHhhhHHHHHhhcc
Q psy17340 162 SEEFQHFVARTGRVMERLLAE 182 (200)
Q Consensus 162 SeeF~~FfeRSSRVIERALsE 182 (200)
.+.|.+|++|-.+-++|-+..
T Consensus 11 kEpf~dfVdRl~~a~~~~~~~ 31 (84)
T d1qrjb1 11 EEPYHAFVERLNIALDNGLPE 31 (84)
T ss_dssp TSCHHHHHHHHHHHHHTTCCT
T ss_pred CCcHHHHHHHHHHHHHhhcCC
Confidence 467999999999999987753
No 2
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=25.31 E-value=13 Score=24.16 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.3
Q ss_pred chHHHHHHHhhhHHHHHhhc
Q psy17340 162 SEEFQHFVARTGRVMERLLA 181 (200)
Q Consensus 162 SeeF~~FfeRSSRVIERALs 181 (200)
.+-|.+|++|..+-+||-..
T Consensus 8 kEpf~dfV~Rl~~~~~~~~~ 27 (70)
T d1a8oa_ 8 KEPFRDYVDRFYKTLRAEQA 27 (70)
T ss_dssp TSCHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHhhcC
Confidence 56799999999999998765
No 3
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.13 E-value=17 Score=27.12 Aligned_cols=13 Identities=62% Similarity=1.152 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCc
Q psy17340 110 TSKLPPGILPHGLPQ 124 (200)
Q Consensus 110 ~~~~~~g~~p~~~p~ 124 (200)
+.+|||| |-|+|=
T Consensus 1 ~~~lPPG--P~~~P~ 13 (467)
T d1r9oa_ 1 RGKLPPG--PTPLPV 13 (467)
T ss_dssp CCBCCCC--SSSCC-
T ss_pred CCCCCcC--CCCCCc
Confidence 3578888 777774
No 4
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=18.84 E-value=22 Score=23.97 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.3
Q ss_pred chHHHHHHHhhhHHHHHhhc
Q psy17340 162 SEEFQHFVARTGRVMERLLA 181 (200)
Q Consensus 162 SeeF~~FfeRSSRVIERALs 181 (200)
.+.|.+|++|.-+-+++-..
T Consensus 11 kEpf~dfVdRl~~al~~~~~ 30 (80)
T d1d1da1 11 SESFVDFANRLIKAVEGSDL 30 (80)
T ss_dssp SSCHHHHHHHHHHHHHTSSC
T ss_pred CccHHHHHHHHHHHHHHhcC
Confidence 56899999999999998664
No 5
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=17.94 E-value=28 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.0
Q ss_pred chHHHHHHHhhhHHHHHhhc
Q psy17340 162 SEEFQHFVARTGRVMERLLA 181 (200)
Q Consensus 162 SeeF~~FfeRSSRVIERALs 181 (200)
.+.|.+|++|-.+-++|-..
T Consensus 11 kEpf~dfVdRl~~a~~~~~~ 30 (75)
T d2eiaa1 11 KEPYPEFVDRLLSQIKSEGH 30 (75)
T ss_dssp TCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhcC
Confidence 56799999999999988764
No 6
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=17.56 E-value=32 Score=24.69 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCCCCHHHHhhccCchHHHHHHHhhhHHHHHhhccCcceeeccCCC
Q psy17340 148 IVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGL 193 (200)
Q Consensus 148 irELSEEEk~~I~~SeeF~~FfeRSSRVIERALsE~yDI~~DYT~~ 193 (200)
+.|||+++|.. +.|+.|+ ||-|++..-+--.|||.
T Consensus 33 ~dELSeeDk~~----------v~RArkl-q~FLtQpFfvae~fTg~ 67 (108)
T d1fx0b1 33 LDELSEEDRLT----------VARARKI-ERFLSQPFFVAEVFTGS 67 (108)
T ss_dssp STTSCTTTHHH----------HHHHHHH-HHHTCCCCSSCTTTSCS
T ss_pred hhhcChhhhHH----------HHHHHHH-HHHhccccccceecCCC
Confidence 56889888875 4677776 89998887776667663
No 7
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.07 E-value=26 Score=24.16 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=17.9
Q ss_pred CCCHHHHhhccCchHHHHHHHhhhHHHHHhh
Q psy17340 150 ELSEDEKLKITLSEEFQHFVARTGRVMERLL 180 (200)
Q Consensus 150 ELSEEEk~~I~~SeeF~~FfeRSSRVIERAL 180 (200)
+||++|++++-.|-+.. ...|++||
T Consensus 143 ~Ls~~E~~~L~~s~~~l------k~~i~~a~ 167 (168)
T d1ldna2 143 ELNDDEKNRFHHSAATL------KSVLARAF 167 (168)
T ss_dssp CCCHHHHHHHHHHHHHH------HHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHH------HHHHHHHc
Confidence 69999999887775443 35566665
No 8
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=15.32 E-value=55 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCCCHHHHhhccCchHHHHHHHhhh
Q psy17340 149 VELSEDEKLKITLSEEFQHFVARTG 173 (200)
Q Consensus 149 rELSEEEk~~I~~SeeF~~FfeRSS 173 (200)
-.||+++-+.|+.+.+..+||+.+.
T Consensus 14 ygL~~~da~~L~~~~~l~~~FE~~~ 38 (107)
T d2f2ab1 14 LGLPAYDAHVLTLTKEMSDFFESTI 38 (107)
T ss_dssp TCCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHccHHHHHHHHHHH
Confidence 4899999999999999999999754
No 9
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=13.01 E-value=74 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=26.3
Q ss_pred cCchHHHHHHHhhhHHHHHhhc---cCcceeeccCCCC
Q psy17340 160 TLSEEFQHFVARTGRVMERLLA---EKSDMYKDYMGLG 194 (200)
Q Consensus 160 ~~SeeF~~FfeRSSRVIERALs---E~yDI~~DYT~~~ 194 (200)
|+..+|.+..+..=..|+.+|. +..|+=+||++++
T Consensus 1 m~e~~f~~~ad~~l~~i~~~ld~~~~~~d~D~e~~~gv 38 (106)
T d1ew4a_ 1 MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGV 38 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSSCCEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccCCeeeeccCCE
Confidence 3456788888888888888886 3567777777764
No 10
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]}
Probab=11.41 E-value=48 Score=28.26 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCCCCCHHHHhhc-------------cCchHHHHHHHhhhHHHHHhhcc
Q psy17340 147 PIVELSEDEKLKI-------------TLSEEFQHFVARTGRVMERLLAE 182 (200)
Q Consensus 147 ~irELSEEEk~~I-------------~~SeeF~~FfeRSSRVIERALsE 182 (200)
-+..|+++||.++ ..--|--.|++|-|+||-.+|+-
T Consensus 307 ~~~~l~~~Ek~~Li~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ 355 (371)
T d1c8ba_ 307 MIGTLPDEEKRRLIHEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNA 355 (371)
T ss_dssp CCSSCCCTTHHHHHHHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGG
T ss_pred HhhccCHHHHHHHHHHHhCccCCcceeCcHhHHHHHHHHHHHHHHHHHH
Confidence 4678888888873 34457778999999999888763
Done!