RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17340
(200 letters)
>gnl|CDD|217351 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members of this
family are found in all the three major phyla of life:
archaebacteria, eubacteria, and eukaryotes. In Bacillus
subtilis, TENA is one of a number of proteins that
enhance the expression of extracellular enzymes, such as
alkaline protease, neutral protease and levansucrase.
The THI-4 protein, which is involved in thiamine
biosynthesis, is also a member of this family. The
C-terminal part of these proteins consistently show
significant sequence similarity to TENA proteins. This
similarity was first noted with the Neurospora crassa
THI-4. This family includes bacterial coenzyme PQQ
synthesis protein C or PQQC proteins. Pyrroloquinoline
quinone (PQQ) is the prosthetic group of several
bacterial enzymes,including methanol dehydrogenase of
methylotrophs and the glucose dehydrogenase of a number
of bacteria. PQQC has been found to be required in the
synthesis of PQQ but its function is unclear. The exact
molecular function of members of this family is
uncertain.
Length = 210
Score = 30.8 bits (70), Expect = 0.30
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 155 EKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKD 189
E + SEEF+ V R++ LLA SD +
Sbjct: 153 EWIDDYGSEEFRSAVEEAERLLNHLLAYVSDSELE 187
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 28.9 bits (65), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 163 EEFQHFVARTGRVMERLLAEKS 184
E FQ F R R + RL A +
Sbjct: 119 EGFQAFSQRVERFIARLSAFQH 140
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 28.2 bits (63), Expect = 2.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 145 TKPIVELSEDEKLKITLSEEFQHFVAR 171
P EL ++ I SEEF+ F+ +
Sbjct: 222 NMPNPELKDEPGNGIKWSEEFKDFIKQ 248
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 140 IKKEETKPIVELSEDEKLKITLSEEFQHFV 169
I KEE K I++ E + + + E F F+
Sbjct: 158 ISKEEMKKILDKCEKRNIYLIIDEAFMDFL 187
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 27.5 bits (62), Expect = 4.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 56 EAEDEDNSLINIDGFTTSKLPPGI-------LPHGLPQVKDVKPA 93
E E D + GF+TS LP + +P GL + V+P
Sbjct: 290 EPEGLDTDEYYLVGFSTS-LPEDVQKRVLRTIP-GLENAEIVRPG 332
>gnl|CDD|185220 PRK15320, PRK15320, transcriptional activator SprB; Provisional.
Length = 251
Score = 27.3 bits (60), Expect = 4.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 7 CRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLIN 66
C I S EK+ L E +LR C H+ PQ + + ++ E + L N
Sbjct: 107 CAIRSEREKLRLPEAWLRFC--HR-----PQ-------KKTVAATYAFNAGETPEEVLFN 152
Query: 67 IDGFTTSKLPPGI 79
I+ + LPPG+
Sbjct: 153 INQYAWWNLPPGV 165
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan
lyase, a family 4 polysaccharide lyase. The
rhamnogalacturonan lyase of the polysaccharide lyase
family 4 (RGL4) is involved in the degradation of RG
(rhamnogalacturonan) type-I, an important pectic plant
cell wall polysaccharide, by cleaving the alpha-1,4
glycoside bond between L-rhamnose and D-galacturonic
acids in the backbone of RG type-I through a
beta-elimination reaction. RGL4 consists of three
domains, an N-terminal catalytic domain, a middle domain
with a FNIII type fold and a C-terminal domain with a
jelly roll fold; the middle and C-terminal domains are
both putative carbohydrate binding modules. There are
two types of RG lyases, which both cleave the alpha-1,4
bonds of the RG-I main chain (RG chain) through the
beta-elimination reaction, but belong to two
structurally unrelated polysaccharide lyase (PL)
families, 4 and 11.
Length = 265
Score = 27.4 bits (61), Expect = 4.8
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 61 DNSLINIDGF-TTSKLPPGILPHGLPQVKDVKPAITS-LEHTEIKKEETKPTSKLPPG 116
++ T +L P + P+G P + LE E++ + T LP G
Sbjct: 118 PAPEPSLGELRTVFRLNPDLFPNGAISDDRGDPPPGTALEGKEVQDD----TFPLPDG 171
>gnl|CDD|240725 cd12279, RRM_TUT1, RNA recognition motif in speckle targeted
PIP5K1A-regulated poly(A) polymerase (Star-PAP) and
similar proteins. This subfamily corresponds to the RRM
of Star-PAP, also termed RNA-binding motif protein 21
(RBM21), which is a ubiquitously expressed U6
snRNA-specific terminal uridylyltransferase (U6-TUTase)
essential for cell proliferation. Although it belongs to
the well-characterized poly(A) polymerase protein
superfamily, Star-PAP is highly divergent from both, the
poly(A) polymerase (PAP) and the terminal uridylyl
transferase (TUTase), identified within the editing
complexes of trypanosomes. Star-PAP predominantly
localizes at nuclear speckles and catalyzes
RNA-modifying nucleotidyl transferase reactions. It
functions in mRNA biosynthesis and may be regulated by
phosphoinositides. It binds to glutathione S-transferase
(GST)-PIPKIalpha. Star-PAP preferentially uses ATP as a
nucleotide substrate and possesses PAP activity that is
stimulated by PtdIns4,5P2. It contains an N-terminal
C2H2-type zinc finger motif followed by an RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), a split PAP
domain linked by a proline-rich region, a PAP catalytic
and core domain, a PAP-associated domain, an RS repeat,
and a nuclear localization signal (NLS). .
Length = 74
Score = 25.8 bits (57), Expect = 5.7
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 148 IVELSEDEKLKITLSEEFQHFVARTGRVMER 178
IVE E + LSE RV R
Sbjct: 43 IVEFDSKEGVDKVLSEPQHTLNGHRLRVRPR 73
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 27.3 bits (61), Expect = 6.7
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 122 LPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLA 181
L VK T L H +K K + LS+ E L E + F+ ++L
Sbjct: 233 LSDVKSADNKTTLL-HFLVKIIRKKYLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQK 291
Query: 182 EKSDMYKDY 190
+ SD+ +
Sbjct: 292 DLSDLKTRF 300
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 27.1 bits (60), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 148 IVELSEDEKLKITLSEEFQHF-VARTGRVMERLLAEKSDMYK 188
I E+ E L + F HF R R++E LLA+ S+ +
Sbjct: 919 IHEVRTREPLPFIADDIFVHFDDERAKRMLE-LLADLSEGNQ 959
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.135 0.383
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,255,217
Number of extensions: 949901
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 29
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)