RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17340
(200 letters)
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO
hydrolase, alternative splicing, lysosome, membrane;
3.00A {Drosophila melanogaster}
Length = 38
Score = 54.9 bits (132), Expect = 4e-11
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 187
LSE++K I LSE FQ FV R GRV+ER L+E D+Y
Sbjct: 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-06
Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 39/194 (20%)
Query: 23 LRVCPLHKSSGD------VPQGLFPAQEQ------SYLPKVLTYDEAEDEDNSLINID-- 68
R PL S G VP F Q LP+ A+DE + +
Sbjct: 6 TR--PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 69 --GFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEE--TKPTSKLPPGILPHGLPQ 124
G+ +S + P + QV + +T E+ ++ + +KL L +
Sbjct: 64 FLGYVSSLVEPSKVGQ-FDQV--LNLCLTEFENCYLEGNDIHAL-AAKLLQ-ENDTTLVK 118
Query: 125 VKDV-KPAITSLEHTE--IKKEETKPIVELSEDEKLKITLSEEF--QHFVARTGRVMERL 179
K++ K IT+ + K+ + + ++ F Q G +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IFGGQ------G-NTDDY 169
Query: 180 LAEKSDMYKDYMGL 193
E D+Y+ Y L
Sbjct: 170 FEELRDLYQTYHVL 183
Score = 39.3 bits (91), Expect = 6e-04
Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 63/190 (33%)
Query: 1 MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDE---- 56
P IG+ +++ Y+ L G P + +SYL + +
Sbjct: 238 CPLIGVIQLAH----------YVVTAKLL--------GFTPGELRSYLKGATGHSQGLVT 279
Query: 57 -----AEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTS 111
D S V+ AIT L ++ E P +
Sbjct: 280 AVAIAETDSWESFFVS----------------------VRKAITVLFFIGVRCYEAYPNT 317
Query: 112 KLPPGILP------HGLPQVKDVKP--AITSLEHTEIKKEETKPIVELSEDEKLKITLSE 163
LPP IL G+P P +I++L +++ K L ++++I+L
Sbjct: 318 SLPPSILEDSLENNEGVPS-----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 164 EFQHFVARTG 173
++ V +G
Sbjct: 373 GAKNLVV-SG 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 28/180 (15%), Positives = 44/180 (24%), Gaps = 58/180 (32%)
Query: 7 CRI------SSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDE 60
C+I + + + T H S L P + +S L K L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT------HISLDHHSMTLTPDEVKSLLLKYL-------- 311
Query: 61 DNSLINIDGFTTSKLPP---GILPHGLP----QVKDVKPAITSLEHTEIKK-EETKPTS- 111
LP P L ++D + +H K +S
Sbjct: 312 --------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 112 -KLPP----------GILPHGLPQVKDVK-PAITSLEH--TEIKKEETKPIVELSEDEKL 157
L P + P P I L ++ K + +V L
Sbjct: 364 NVLEPAEYRKMFDRLSVFP------PSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 36.0 bits (82), Expect = 0.007
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 21/103 (20%)
Query: 99 HTEIKKEETKPTSKLPPGILPHGLPQVK---DVKPAITSLEHTEIKKEETKPIVELSEDE 155
H + + E + K IL D K + + + + KEE I+ +
Sbjct: 6 HMDFETGEHQYQYK---DILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 156 KLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
T R+ LL+++ +M + ++
Sbjct: 62 S--------------GTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 31.9 bits (72), Expect = 0.14
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 71 TTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPPGILPHGL-PQVKDVK 129
++ +P +P+ K A +L EIK ++ +L + + + K
Sbjct: 11 SSGLVPR---GSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEK 67
Query: 130 PAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
+ + H K +L E EK + L+E+ + V
Sbjct: 68 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTV 107
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 29.2 bits (65), Expect = 0.82
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 28 LHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGI 79
L K + + L Q+ + + DE L N D KL GI
Sbjct: 260 LLKDNSKLAPALSVKAAQTSDSEKIHLDEKAFR--WLHNEDQMAVEKLSDGI 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 17/43 (39%)
Query: 98 EHTEIKKEETKPTSKL-PPGILPHGLPQVKDVKPAI---TSLE 136
E +KK + + KL D PA+ ++E
Sbjct: 18 EKQALKKLQA--SLKLYAD-----------DSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 7.7
Identities = 4/52 (7%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 139 EIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDY 190
+ +E + I + E+++ ++ + E+ + + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASK--VMEQEWREKAKKDLEEWNQRQ 127
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 26.1 bits (58), Expect = 9.6
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 155 EKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 187
+ +TL +E + V R+ ++E +++++ +Y
Sbjct: 46 DHQPVTLHDEVVNRVTRSRSILESMVSDERVIY 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.135 0.383
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,003,279
Number of extensions: 172425
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 16
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.9 bits)