RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17340
         (200 letters)



>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 206

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 162 SEEFQHFVARTGRVMERLLAEKSDMYKDYM 191
           S+EF  +V R  +++  L  +  +  K+  
Sbjct: 158 SQEFGEYVKRIEKILNSLAEKHGEFEKERA 187


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
           (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 25.3 bits (55), Expect = 6.9
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 15/61 (24%)

Query: 142 KEETKPIVELS---------------EDEKLKITLSEEFQHFVARTGRVMERLLAEKSDM 186
            E  KP+V+L                +   + + LSE  +  V  +   +   + + +D 
Sbjct: 26  AEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDS 85

Query: 187 Y 187
           Y
Sbjct: 86  Y 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,200
Number of extensions: 32805
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)