BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17341
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L9K|W Chain W, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|X Chain X, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|Y Chain Y, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
pdb|3L9K|Z Chain Z, Insights Into Dynein Assembly From A Dynein Intermediate
Cha Chain Roadblock Structure
Length = 38
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 62 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
LSE++K I LSE FQ FV R GRV+ER L+E D+Y
Sbjct: 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37
>pdb|1WLX|A Chain A, Solution Structure Of The Third Spectrin Repeat Of Alpha-
Actinin-4
Length = 129
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 57 YLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSS 116
++V + E E L I+ ++F+ + R E +LA ++K+ + +++ I S+
Sbjct: 39 FIVHTIEEIEGL-ISAHDQFKSTLPDADREREAILA----IHKEAQRIAESNHIKLSGSN 93
Query: 117 TKLSFCRQFFDEKWSKNQQMAPK 139
+ Q + KW K QQ+ PK
Sbjct: 94 PYTTVTPQIINSKWEKVQQLVPK 116
>pdb|1B65|A Chain A, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|B Chain B, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|C Chain C, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|D Chain D, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|E Chain E, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|F Chain F, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
Length = 375
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 31 SVSANGTPESNNTPDTSILNS--------YHSAAYLVVELSEDEKL 68
+ NGTP NN+ D I S + SA +L VE+ DE L
Sbjct: 276 GIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPL 321
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 2 GDKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTP---------ESNNTPDTSILNSY 52
G D++ D+ LS A V DV + A+ P ++ TP S+ +SY
Sbjct: 236 GFLDEKGVQDTKLSPSPDAVVGDVRRVREQIEASAFPGLPLYFTEWSTSYTPRDSVHDSY 295
Query: 53 HSAAYLVVELSEDEKLKITLS 73
SAAY+V +L + L +S
Sbjct: 296 VSAAYIVEKLRRVKGLVQAMS 316
>pdb|1XZZ|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 1 Inositol 1,4,5-trisphosphate Receptor
Length = 246
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 38 PESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDM 97
P +N+T D +LN H AA L + +E E K+ + V + G V++ LL KS+
Sbjct: 93 PGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGT------VIQYGNVIQ-LLHLKSNK 145
Query: 98 Y 98
Y
Sbjct: 146 Y 146
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 38 PESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDM 97
P +N+T D +LN H AA L + +E E K+ + V + G V++ LL KS+
Sbjct: 76 PGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGT------VIQYGNVIQ-LLHLKSNK 128
Query: 98 Y 98
Y
Sbjct: 129 Y 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,760,257
Number of Sequences: 62578
Number of extensions: 261548
Number of successful extensions: 619
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 19
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)