BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17341
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24246|DYIN_DROME Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster
GN=sw PE=1 SV=3
Length = 663
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 30/169 (17%)
Query: 59 VVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTK 118
V ELSE++K I LSE FQ FV R GRV+ER L+E D+Y DY+G GD++E DE+S +
Sbjct: 239 VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHAR 298
Query: 119 LSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 178
LS R F+DE+W SKNR +T MDWST PEL
Sbjct: 299 LSLNRVFYDERW------------------------------SKNRCITSMDWSTHFPEL 328
Query: 179 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
++ SYH N+E+PNEPDGV ++WNTKFKK+TPE F CQS V+S CFAKF
Sbjct: 329 VVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKF 377
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Query: 3 DKDQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESNN-TPDTSI 48
DKDQRK+LD MLSSLGVAPV++V+SSLSSV++ + SN TPD S+
Sbjct: 47 DKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASL 93
>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1
PE=1 SV=1
Length = 608
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 107/167 (64%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 178 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 220
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+++ KDGD ++ LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 221 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 267
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 268 ASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 314
>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens
GN=DYNC1I1 PE=1 SV=2
Length = 645
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 107/167 (64%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 215 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 257
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+++ KDGD ++ LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 258 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 304
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 305 ASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 351
>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus
GN=Dync1i1 PE=1 SV=2
Length = 628
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 198 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 240
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+++ KDGD ++ LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 241 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 287
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 288 ASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 334
>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus
GN=Dync1i1 PE=1 SV=1
Length = 643
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F RT RV+ER LAE SD++ DY G
Sbjct: 213 ELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG----------------- 255
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+++ KDGD ++ LSF RQF+DE WSK+R VT MDWS Q+PEL++
Sbjct: 256 -------------RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMV 302
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY N++AP+EPDGV L+WN KFKKTTPE+ F CQS V+S CFA+F
Sbjct: 303 ASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARF 349
>sp|Q62871|DC1I2_RAT Cytoplasmic dynein 1 intermediate chain 2 OS=Rattus norvegicus
GN=Dync1i2 PE=1 SV=1
Length = 638
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+ + K+G+ ++ KLS RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N+EAP+EPDGV L+WN K+KKTTPE+ F CQS V+S FAKF
Sbjct: 297 ASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343
>sp|O88487|DC1I2_MOUSE Cytoplasmic dynein 1 intermediate chain 2 OS=Mus musculus
GN=Dync1i2 PE=2 SV=1
Length = 612
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 181 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 223
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+ + K+G+ ++ KLS RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 224 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 270
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N+EAP+EPDGV L+WN K+KKTTPE+ F CQS V+S FAKF
Sbjct: 271 ASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 317
>sp|Q0III3|DC1I2_BOVIN Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus GN=DYNC1I2
PE=1 SV=1
Length = 612
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 181 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 223
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+ + K+G+ ++ KLS RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 224 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 270
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S FAKF
Sbjct: 271 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 317
>sp|Q5NVM2|DC1I2_PONAB Cytoplasmic dynein 1 intermediate chain 2 OS=Pongo abelii
GN=DYNC1I2 PE=2 SV=1
Length = 638
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+ + K+G+ ++ KLS RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S FAKF
Sbjct: 297 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343
>sp|Q13409|DC1I2_HUMAN Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens
GN=DYNC1I2 PE=1 SV=3
Length = 638
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 30/167 (17%)
Query: 61 ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIGDEKSSTKLS 120
EL+E+EK +I SEEF F + R++ER L+E+ +++ DY G
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG----------------- 249
Query: 121 FCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 180
+ + K+G+ ++ KLS RQFFDE+WSK+R V+ +DWS+Q+PELL+
Sbjct: 250 -------------RDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLV 296
Query: 181 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF 227
ASY+ N++AP+EPDGV L+WN K+KKTTPE+ F CQS V+S FAKF
Sbjct: 297 ASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKF 343
>sp|P54703|DYIN_DICDI Cytoplasmic dynein 1 intermediate chain OS=Dictyostelium discoideum
GN=dicA PE=2 SV=2
Length = 654
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 40/204 (19%)
Query: 28 SLSSVSANGTPESNNTPDTSILNSYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVM 87
S+ + S NG S + +++ ++ + EL E+EK I S+ F+ F R+ RV+
Sbjct: 176 SIGTDSINGDGSSTSVANSANIDDDDKDEIEIPELDENEKKDILESDSFKSFFGRSSRVI 235
Query: 88 ERLLA--EKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKS 145
ER L + D+ DY I DE S + +
Sbjct: 236 ERALCLDDSIDILVDYT-------ISDENS---------------------------KGT 261
Query: 146 STKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW--NTK 203
S +L DE+W+K+R++T + WST+HPEL+++SY N+ ++PDGV L+W N
Sbjct: 262 SKELKLLATLSDERWTKHRSITDISWSTKHPELVVSSYSANEAGSHDPDGVALVWSVNNY 321
Query: 204 FKKTTPEFEFFCQSPVLSCCFAKF 227
F+K PE+ F CQSPV++ F+KF
Sbjct: 322 FQK--PEYVFTCQSPVMTTFFSKF 343
>sp|O94518|DIC1_SCHPO Dynein intermediate chain 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dic1 PE=1 SV=2
Length = 544
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 155 FFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF 214
F DEK + N V + +S+ ELL+ SY + KEA G+ ++WN ++K +PE
Sbjct: 184 FQDEKITLNSVVNSISYSSFFEELLITSYAKPKEAL-RTRGLAIVWNQRWKN-SPESVLK 241
Query: 215 CQSPVLSC 222
+S + C
Sbjct: 242 ARSEITVC 249
>sp|P41028|SP4_BACMD Putative stage IV sporulation protein OS=Bacillus megaterium
(strain DSM 319) GN=spoIV PE=4 SV=2
Length = 395
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 51 SYHSAAYLVVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSD---MYKDYMGLGD- 106
SYH + VVE +E + + T +QH +A+ ++ L EK D++ G+
Sbjct: 171 SYH---FQVVEKNEPKPQQKT---PYQHLIAKKKAIITNLFVEKGQPLVKVNDFVNEGEV 224
Query: 107 --ADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFD 157
+ IG+EK+ ++ + + E W K++ P D + T + + + D
Sbjct: 225 LVSGIIGNEKNKKVVAAKGKVYGETWYKSEVEVPLKTDFQVLTGNGYTKHYLD 277
>sp|P39846|PPSB_BACSU Plipastatin synthase subunit B OS=Bacillus subtilis (strain 168)
GN=ppsB PE=1 SV=1
Length = 2560
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 91 LAEKSDMYKDYMGLGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLS 150
L +K+D Y Y + I D S ++ ++DE +++ Q PKD D S+T
Sbjct: 2254 LPQKTDSYLTY-----SQRIADYSISRQVQREAAYWDECENRHIQPIPKDNDAASNT--- 2305
Query: 151 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 185
K+ V + S H ELLL + H+
Sbjct: 2306 ----------FKDTEVIDFELSRHHTELLLTAAHK 2330
>sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB
PE=3 SV=1
Length = 547
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 5 DQRKELDSMLSSLGVAPVADVMSSLSSVSANGTPESN----NTPDT--SILNSYHSAAYL 58
D L +S LG+ P D + S S + TPES NT +L +Y + +
Sbjct: 399 DATTVLSRQISELGIYPAVDPLDSTSRML---TPESGEEHYNTARGVQKVLQNYKNLQDI 455
Query: 59 VV-----ELSEDEKLKITLSEEFQHFVARTGRVME 88
+ ELSED+KL + + + Q F+++ V E
Sbjct: 456 IAILGMDELSEDDKLTVARARKIQRFLSQPFHVAE 490
>sp|A6UT36|VATB_META3 V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1
Length = 464
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 10 LDSMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTSILNSYHSAAY--------LVV- 60
L L+ G+ P DV+ SLS ++ NG E D S + S A Y LV
Sbjct: 334 LSRELNRKGIYPPVDVLPSLSRLAGNGVGEGKTRDDHSKVISQVYAGYAEGIGLRDLVAV 393
Query: 61 ----ELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYM 102
LSE ++ + L++ F+ + G+ +R + E D+ D +
Sbjct: 394 VGEESLSERDRAYLKLADVFEKKFVQQGKDEDRSIEETLDIVWDIL 439
>sp|B9K814|VATB_THENN V-type ATP synthase beta chain OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=atpB PE=3 SV=1
Length = 460
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 18 GVAPVADVMSSLSSVSANGTPES---NNTPDTS--ILNSY------HSAAYLVVE--LSE 64
G+ P D++SSLS + +G E + PD + + ++Y S A +V E L E
Sbjct: 337 GIYPPIDILSSLSRLMKDGIGEGYTREDHPDVASQLFSAYSRVMEVRSIASIVGEEDLPE 396
Query: 65 DEKLKITLSEEFQHF 79
+KL + EEF+H
Sbjct: 397 IDKLYLKFGEEFEHL 411
>sp|A3LT66|MCR1_PICST NADH-cytochrome b5 reductase 2 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=MCR1 PE=3 SV=2
Length = 298
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 55/147 (37%), Gaps = 25/147 (17%)
Query: 13 MLSSLGVAPVADVMSSLSSVSANGTPESNNTP-----------DTSILNSY---HSAAYL 58
+ SS V PVA L+S S + N P D +++S+ H +L
Sbjct: 10 LASSKFVLPVAAAAVGLASYSFTSSSFIANEPSKAFKGGDEWIDLKLISSHDLSHDTKHL 69
Query: 59 VVELSEDEKLK--ITLSEEFQHFVARTGRVMERLLAEKSD---------MYKDYMGLGDA 107
V EL + + +T S FV G + R SD + K Y G +
Sbjct: 70 VFELPNKDDVSGLVTASLLMTKFVTPKGSNVIRPYTPVSDTEQAGTIDFVVKKYEGGKMS 129
Query: 108 DEIGDEKSSTKLSFCRQFFDEKWSKNQ 134
I D K + LSF F KW NQ
Sbjct: 130 SHIHDLKPNDTLSFKGPFVKWKWEPNQ 156
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 12 SMLSSLGVAPVADVMSSLSSVSANGTPESNNTPDTS--ILNSYHSAAYLVVELSEDE 66
S+LS G +P A +SSL+ S TPES P TS +L S S+ + +VE D+
Sbjct: 15 SILSGAGYSPAAARLSSLAQTS---TPESVLPPITSEILLESIRSSQWHIVEHVADK 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,749,242
Number of Sequences: 539616
Number of extensions: 3650690
Number of successful extensions: 10315
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 10276
Number of HSP's gapped (non-prelim): 80
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)