RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17341
(232 letters)
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23,
RO hydrolase, alternative splicing, lysosome, membrane;
3.00A {Drosophila melanogaster}
Length = 38
Score = 52.6 bits (126), Expect = 5e-10
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 62 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
LSE++K I LSE FQ FV R GRV+ER L+E D+Y
Sbjct: 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 5e-04
Identities = 30/205 (14%), Positives = 54/205 (26%), Gaps = 56/205 (27%)
Query: 61 ELSEDEKL--KITLSEEFQHFVAR---------TGRVMERLLAEKSDMYKDYMGLGD--- 106
+ D++ L +F +V+ +V+ L E Y+ D
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHA 103
Query: 107 ----ADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKS-------STKLSFCRQF 155
+ D + + + + P D S F
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 156 ---------FDEKWSKNRNV--TY----MDWSTQHPELL--LASYHRNKEAPNEPDGVCL 198
F+E R++ TY D E L L G+ +
Sbjct: 161 GGQGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNI 215
Query: 199 I-WNTKFKKTTPEFEFFCQSPVLSC 222
+ W TP+ ++ P+ SC
Sbjct: 216 LEWLEN-PSNTPDKDYLLSIPI-SC 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.036
Identities = 31/238 (13%), Positives = 63/238 (26%), Gaps = 84/238 (35%)
Query: 64 EDEKLKITLSEEFQHFVA------RTGRVMERLLAEKSDMYKDYMGLGD-------ADEI 110
+D I EE H + T R+ LL+++ +M + ++ I
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 111 GDEKSSTKLSFCR--QFFDEKWSKNQQMAPKD---------------------------- 140
E+ + + D ++ NQ A +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 141 -GDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQH-PELLLA-----SYHRNKEAPNEP 193
G K+ L C + + + + +++ + PE +L Y + +
Sbjct: 159 LGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 194 DGV-------------------------CLI-----WNTKFKKTTPEFEFFCQSPVLS 221
D CL+ N K F C+ + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTT 272
Score = 30.2 bits (67), Expect = 0.74
Identities = 28/215 (13%), Positives = 52/215 (24%), Gaps = 77/215 (35%)
Query: 43 TPDTSILNSYHSAAYLVVE-------LSEDEKLKI----------TLSEEFQHFVARTG- 84
T + + +A + L+ DE + L E T
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTN 326
Query: 85 -RVMERLLAEKSDM------YKDYMGLGDADEIGD--EKSSTKLSFC--RQFF------- 126
R + + D +K + D++ E S L R+ F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 127 -DEK---------WSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKNRNVT----YMDWS 172
W K KL + EK K ++ Y++
Sbjct: 383 PSAHIPTILLSLIWFD----VIKSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYLELK 436
Query: 173 TQ-------HPELL-----LASYHRNKEAPNEPDG 195
+ H ++ ++ + P D
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.097
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 3 DKDQRKELDSMLSSLGV-APVADVMSSLSSVSANGTPE 39
+K K+L +SL + A D S +++ T E
Sbjct: 18 EKQALKKLQ---ASLKLYAD--D---SAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.3
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 104 LGDADEIGDEKSSTKLSFCRQFFDEKWSKNQQMAPKDGDEKSSTKLSFCRQFFDEKWSKN 163
+ AD + E S + KW + Q+ ++ D S ++W +
Sbjct: 74 IAQADRLTQEPESIR----------KWREEQRKRLQELDAASKVME--------QEWREK 115
Query: 164 RNVTYMDWSTQHPELLLASYHRNKEAPNE 192
+W+ + E + + N+ A
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>3lml_A LIN1278 protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, LKR115; 3.30A {Listeria innocua}
Length = 460
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 157 DEKWSKNRNVTYMD-----WSTQHPELLLASYHRNKEAPNEPDGVCLIWN 201
K+ KN+ +D + + N + P + +GV I +
Sbjct: 346 SSKFRKNKISRILDGINNDTRRNILDAIKERKDANTDIPADENGVQFILS 395
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 27.9 bits (62), Expect = 3.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 194 DGVCLIWN--TKFKKTTPEFEFFCQSPVLSCCF 224
DG ++ + K + P+L C F
Sbjct: 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 194 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFFFLYA 232
DG+ WN + +K F F + V+ + A
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 26.9 bits (60), Expect = 6.7
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 66 EKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
+ +TL +E + V R+ ++E +++++ +Y
Sbjct: 46 DHQPVTLHDEVVNRVTRSRSILESMVSDERVIY 78
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 26.5 bits (59), Expect = 8.0
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 66 EKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 98
E+ + + E ++ + E + + +Y
Sbjct: 20 ERATVDVPAESIAKAQKSREIFEGIAEQNIPIY 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.387
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,407,666
Number of extensions: 185330
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 13
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)