BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17342
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
L+S S+D +C W + ++P+E R + N T + AV+ +A+ + F +D
Sbjct: 201 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 258
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
+ R+ N + + H V LS + +S L T S D +V LW+++
Sbjct: 259 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 312
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
K +HSF +D + VQWSP N + A+ R+ +W+L+ E +T +G P
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Query: 360 AL-----------SRVTWTPN 369
L S +W PN
Sbjct: 373 ELLFIHGGHTAKISDFSWNPN 393
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
L+S S+D +C W + ++P+E R + N T + AV+ +A+ + F +D
Sbjct: 199 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 256
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
+ R+ N + + H V LS + +S L T S D +V LW+++
Sbjct: 257 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 310
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
K +HSF +D + VQWSP N + A+ R+ +W+L+ E +T +G P
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Query: 360 AL-----------SRVTWTPN 369
L S +W PN
Sbjct: 371 ELLFIHGGHTAKISDFSWNPN 391
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
L+S S+D +C W + ++P+E R + N T + AV+ +A+ + F +D
Sbjct: 197 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
+ R+ N + + H V LS + +S L T S D +V LW+++
Sbjct: 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 308
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
K +HSF +D + VQWSP N + A+ R+ +W+L+ E +T +G P
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Query: 360 AL-----------SRVTWTPN 369
L S +W PN
Sbjct: 369 ELLFIHGGHTAKISDFSWNPN 389
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 36/263 (13%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
NP +I T S ++++D K P P L + H + +S + H
Sbjct: 136 NPCIIATKTPSSDVLVFD---YTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGH 192
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL---SLAFPQNDVNNFVVGC 239
L+S S+D +C W + + P+E + + T + AV+ S + V
Sbjct: 193 -LLSASDDHTICLWDISAV--PKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADD 249
Query: 240 EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWN 298
+ ++ R N + + H V LS + +S L T S D +V LW+
Sbjct: 250 QKLMIWD-TRSNNTSKPSHSVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWD 302
Query: 299 IKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
++ K +HSF +D + VQWSP N + A+ R+++W+L+ E + +G
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 358 APAL-----------SRVTWTPN 369
P L S +W PN
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPN 385
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 51/291 (17%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
NP++I T S ++++D K P P L + H + +S + H
Sbjct: 138 NPHIIATKTPSSDVLVFD---YTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGH 194
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL----------SLAFPQNDV 232
L+S S+D +C W + + P+E + + T + AV+ SL D
Sbjct: 195 -LLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYD 291
++ N S H + H V LS + +S L T S D
Sbjct: 252 QKLMIWDTRSNTTSKPSH--------LVDAHTAEVNCLSFNP------YSEFILATGSAD 297
Query: 292 WSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
+V LW+++ K +H+F +D + V WSP N + A+ R+++W+L+ E +
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 351 TSAIVEGAPAL-----------SRVTWTPNGT-QLCVGDEKGAITMFDVGE 389
+G P L S +W PN +C E + ++ + E
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 34/262 (12%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
NP++I T S ++++D K P P L + H + +S + H
Sbjct: 138 NPHIIATKTPSSDVLVFD---YTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGH 194
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCED 241
L+S S+D +C W + + P+E + + T + AV+ +A+ + F +D
Sbjct: 195 -LLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 242 GNVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNI 299
+ R + + H V LS + +S L T S D +V LW++
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDL 305
Query: 300 KENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA 358
+ K +H+F +D + V WSP N + A+ R+++W+L+ E + +G
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Query: 359 PAL-----------SRVTWTPN 369
P L S +W PN
Sbjct: 366 PELLFIHGGHTAKISDFSWNPN 387
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN-KQTKNLAVLSLA 226
H F V + N + +S S D L W+L+ QY TK+ VLS+A
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ-------NGQCQYKFLGHTKD--VLSVA 116
Query: 227 FPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
F D V G D NV C H G H V S R +D
Sbjct: 117 FSP-DNRQIVSGGRDNALRVWNVKGECMHTLSRG------AHTDWV---SCVRFSPSLD- 165
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
+ + ++ +D VK+W++ + V +YV V SP + +L A+ + G LW+
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWD 224
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
L T+ A S + GAP ++++ ++PN +C EKG I +FD+
Sbjct: 225 L---TKGEALSEMAAGAP-INQICFSPNRYWMCAATEKG-IRIFDL 265
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 269 GLSSHRAQGHIDF---------SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
GL R +GH F + +++S+D S++LWN++ + + F V+ V
Sbjct: 57 GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA 116
Query: 320 WSPINPALFA 329
+SP N + +
Sbjct: 117 FSPDNRQIVS 126
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 37/266 (13%)
Query: 130 NPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS 188
N +I+ + I+LW T+ K V + L+ H+H F V+ + + +S S
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSH--FVEDVVLSSDGQFALSGS 449
Query: 189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----N 243
DG L W L ++ TR + K VLS+AF D V D N
Sbjct: 450 WDGELRLWDL---AAGVSTRRFVGHTKD-----VLSVAFSL-DNRQIVSASRDRTIKLWN 500
Query: 244 VYSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
C++ G EGH V V S + Q I +++S+D +VK+WN+
Sbjct: 501 TLGECKYTISEGG----EGHRDWVSCVRFSPNTLQPTI------VSASWDKTVKVWNLSN 550
Query: 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL 361
K + YV V SP + +L A+ G V LW+L ++ + +E +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS----LEANSVI 605
Query: 362 SRVTWTPNGTQLCVGDEKGAITMFDV 387
+ ++PN LC E G I ++D+
Sbjct: 606 HALCFSPNRYWLCAATEHG-IKIWDL 630
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
++ S ++S Y + ++++ + +P +D V+D++W+P P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
+ A G + + + TE A + A++ V W+P G QL VG + G + +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
++ S ++S Y + ++++ + +P +D V+D++W+P P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
+ A G + + + TE A + A++ V W+P G QL VG + G + +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
++ S ++S Y + ++++ + +P +D V+D++W+P P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
+ A G + + + TE A + A++ V W+P G QL VG + G + +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 148 TRVQKKTPVHRTPL------SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML 201
++ Q +T V P ++ H+ V+ + +N ++S S DGRL W+ L
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNW--IVSASQDGRLIVWN--AL 96
Query: 202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHGNKAGNV--- 257
+S Q+T ++ + V+ AF N + G + ++++ ++ GN+
Sbjct: 97 TS-QKTHAIKLHCPW-----VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS 150
Query: 258 ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF-NEF----R 312
GH+G + Q D +T S D + LW++ + + F +EF
Sbjct: 151 RVLTGHKG-----YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205
Query: 313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ 372
V+ + + +N +F + V LW+L + + T EG ++ V + P+G +
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG--DINSVKFFPDGQR 263
Query: 373 LCVGDEKGAITMFDV 387
G + G +FD+
Sbjct: 264 FGTGSDDGTCRLFDM 278
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250
GR+ W+ E + E R +Q + ++ N +VG +D + +
Sbjct: 35 GRVELWNYE---TQVEVRSIQVTETPVRAGKFIARK------NWIIVGSDDFRI--RVFN 83
Query: 251 GNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFN 309
N V +E H + ++ H + ++ L+ S D +VKLWN + N + +F
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFE 137
Query: 310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+VM V ++P +P+ FA+ + V +W+L T
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA---TSAIVEGAPALSR 363
+F+ D V + + P P + T+ +GRV+LWN EV + T V ++R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 364 VTWTPNGTQLCVGDEKGAITMFD 386
W + VG + I +F+
Sbjct: 67 KNW------IIVGSDDFRIRVFN 83
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
V+ +AF D + F GC D V G N G E R ++D+
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTV-KVWSLGQSTPNFTLTTGQE---------RGVNYVDY 192
Query: 282 SHL-----YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR 336
L +T+S D ++K+W+ + V + V + P P + + E G
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGT 251
Query: 337 VDLWN 341
+ +WN
Sbjct: 252 LKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250
GR+ W+ E + E R +Q + ++ N +VG +D + +
Sbjct: 35 GRVELWNYE---TQVEVRSIQVTETPVRAGKFIARK------NWIIVGSDDFRI--RVFN 83
Query: 251 GNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFN 309
N V +E H + ++ H + ++ L+ S D +VKLWN + N + +F
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFE 137
Query: 310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+VM V ++P +P+ FA+ + V +W+L T
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA---TSAIVEGAPALSR 363
+F+ D V + + P P + T+ +GRV+LWN EV + T V ++R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 364 VTWTPNGTQLCVGDEKGAITMFD 386
W + VG + I +F+
Sbjct: 67 KNW------IIVGSDDFRIRVFN 83
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
V+ +AF D + F GC D V G N G E R ++D+
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTV-KVWSLGQSTPNFTLTTGQE---------RGVNYVDY 192
Query: 282 SHL-----YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR 336
L +T+S D ++K+W+ + V + V + P P + + E G
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGT 251
Query: 337 VDLWN 341
+ +WN
Sbjct: 252 LKIWN 256
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA----GR 336
F+ +T S D+S+KLW++ + V ++ V V++SP A ++ G
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 337 VDLWNLNLD---------TEVPATSAIV-EGAPALSRVTWTPNGTQLCVGDEKGAITMFD 386
++++ + D +E P I EG A + W+ G + G + G I+ +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 387 V 387
V
Sbjct: 204 V 204
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250
GR+ W+ E + E R +Q + ++ N +VG +D + +
Sbjct: 35 GRVELWNYE---TQVEVRSIQVTETPVRAGKFIARK------NWIIVGSDDFRI--RVFN 83
Query: 251 GNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFN 309
N V +E H + ++ H + ++ L+ S D +VKLWN + N + +F
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFE 137
Query: 310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+VM V ++P +P+ FA+ + V +W+L T
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA---TSAIVEGAPALSR 363
+F+ D V + + P P + T+ +GRV+LWN EV + T V ++R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 364 VTWTPNGTQLCVGDEKGAITMFD 386
W + VG + I +F+
Sbjct: 67 KNW------IIVGSDDFRIRVFN 83
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
V+ +AF D + F GC D V G N G E R ++D+
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTV-KVWSLGQSTPNFTLTTGQE---------RGVNYVDY 192
Query: 282 SHL-----YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR 336
L +T+S D ++K+W+ + V + V + P P + + E G
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGT 251
Query: 337 VDLWN 341
+ +WN
Sbjct: 252 LKIWN 256
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
++ D+SVK+W++ + + S+N V V P +F + GR+ LW D
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW----D 210
Query: 346 TEVPATSAIVEGAPA---LSRVTWTPNGTQ-LCVGDEKGAITMFDV 387
T P + ++ + + VTW P GDE G +++ ++
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221
S AH+ V C++ ++ +S DGR+ W P+ + + T +
Sbjct: 176 SYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLWDTR---KPKPATRIDFCASDTIPTS 231
Query: 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
V P+ D + F G E GNV + + + + H + GL+ +
Sbjct: 232 VT--WHPEKD-DTFACGDETGNV--SLVNIKNPDSAQTSAVHSQNITGLA------YSYH 280
Query: 282 SHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV 331
S +L S S D +V + + ++ + RD+V V WSP++ + F TV
Sbjct: 281 SSPFLASISEDCTVAVLDADFSEVFRDLSH-RDFVTGVAWSPLDHSKFTTV 330
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250
GR+ W+ E + E R +Q + ++ N +VG +D + +
Sbjct: 35 GRVEIWNYE---TQVEVRSIQVTETPVRAGKFIARK------NWIIVGSDDFRI--RVFN 83
Query: 251 GNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFN 309
N V +E H + ++ H + ++ L+ S D +VKLWN + N + +F
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFE 137
Query: 310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+VM V ++P +P+ FA+ + V +W+L T
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA---TSAIVEGAPALSR 363
+F+ D V + + P P + T+ +GRV++WN EV + T V ++R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR 66
Query: 364 VTWTPNGTQLCVGDEKGAITMFD 386
W + VG + I +F+
Sbjct: 67 KNW------IIVGSDDFRIRVFN 83
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
V+ +AF D + F GC D V G N G E R ++D+
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTV-KVWSLGQSTPNFTLTTGQE---------RGVNYVDY 192
Query: 282 SHL-----YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR 336
L +T+S D ++K+W+ + V + V + P P + + E G
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGT 251
Query: 337 VDLWN 341
+ +WN
Sbjct: 252 LKIWN 256
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 18/232 (7%)
Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV-FCMSVIG 177
S V + F ++ G +G+I +WD ++P + TPL+ V +S+
Sbjct: 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173
Query: 178 TQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA--FPQNDVNN 234
Q+ AH S + W L+ + +E L Y + + LS+ P+N
Sbjct: 174 NQSLAHVFASAGSSNFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230
Query: 235 FVVGCEDGN---VYSACRHGNKAGNVECYEGHEGPVVGLS-SHRAQGHIDFSHLYLTSSY 290
D + + R+ N +GH+ ++ L H+ + HL L+S
Sbjct: 231 ATATGSDNDPSILIWDLRNANTPLQT-LNQGHQKGILSLDWCHQDE------HLLLSSGR 283
Query: 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
D +V LWN + + + F ++ +++P P LFA ++++ L
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 210 LQYNNKQTKNLAVLSLAFPQNDVNN---FVVGCEDGNVYSACRHGNKAGNVECYEGHEGP 266
+ + +Q + A+ S+A+ N N V G D V + EGH+
Sbjct: 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG 82
Query: 267 VVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI 323
VV +D SH + +SS D ++LW+++ K + S + + +SP
Sbjct: 83 VVS---------VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP- 132
Query: 324 NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT 383
+ AT G+V++ +++ S G LS + ++P+G L G G I
Sbjct: 133 DSQYLATGTHVGKVNI--FGVESGKKEYSLDTRGKFILS-IAYSPDGKYLASGAIDGIIN 189
Query: 384 MFDVG 388
+FD+
Sbjct: 190 IFDIA 194
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
V +P + A+ H S+ + +S ++D R+ W LE+ D++ N
Sbjct: 164 VEASPRRIFANAHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANM 222
Query: 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA---GNVECYEGHEGPVVGLSS 272
+ + + F N N FV G + C A + + +E E P S
Sbjct: 223 EELTEVITAAEFHPNSCNTFVYSSSKGTI-RLCDMRASALCDRHSKLFEEPEDP-----S 276
Query: 273 HR--------AQGHIDFSH--LYLTSSYDWSVKLWNIK-ENKPVHSF 308
+R + + FSH Y+ + SVK+W++ EN+PV ++
Sbjct: 277 NRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 323
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 181 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 234
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 115 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
V+L ++K H R ++ V WSP + AT RV LW++
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 181 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 234
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 115 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 184 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 237
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 118 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 181 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 234
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 115 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 194
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 195 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 248
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 129 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 178
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 179 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 232
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 113 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 176
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 177 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 230
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 111 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 184 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 237
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 118 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 178 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 231
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 112 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 182
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 183 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 236
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 117 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 178 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 231
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 112 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 201
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 202 TASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 255
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 136 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 184 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 237
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 118 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 173
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 174 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 227
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 108 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K K + + D V V ++ + +L + G +W+
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 199
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 200 TASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 253
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQK--KT-PVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K KT P H P+S +
Sbjct: 134 CC--NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC-----------RHGNKAGNVECYE 261
N K KNL+ L + P D +DG ++C G K +++
Sbjct: 599 NKKTIKNLSRL-VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--- 654
Query: 262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
HE V+ + +I T S D VK+W+ K VH+++E + V ++
Sbjct: 655 AHEDEVLCCAFSSDDSYI------ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 322 -PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380
N L AT + LW+LN + + + +++ ++P+ L G
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 381 AITMFDV 387
+ ++DV
Sbjct: 766 TLRLWDV 772
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC-----------RHGNKAGNVECYE 261
N K KNL+ L + P D +DG ++C G K +++
Sbjct: 606 NKKTIKNLSRL-VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--- 661
Query: 262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
HE V+ + +I T S D VK+W+ K VH+++E + V ++
Sbjct: 662 AHEDEVLCCAFSSDDSYI------ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 322 -PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380
N L AT + LW+LN + + + +++ ++P+ L G
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLN---QKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 381 AITMFDV 387
+ ++DV
Sbjct: 773 TLRLWDV 779
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 25/118 (21%)
Query: 286 LTSSYDWSVKLWNI-------KENKPVHSFNEFRDYVMDVQWSPINPA---------LFA 329
L++ + +KLWNI K HS D+V V++SPI + FA
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHS-----DWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 330 TVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+V GR+ +WN N ++ T E ++ ++ +PNG + G + + ++D+
Sbjct: 189 SVGWDGRLKVWNTNF--QIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 258 ECYEGHEGPVVGLSSHRAQGHIDFSH---------LYLTSSYDWSVKLWNIKENKPVHSF 308
+ YE + G+ GH F ++SS+D +++LW+++ F
Sbjct: 55 KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF 114
Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
+ V V +SP N + + + LWN+
Sbjct: 115 VGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI 147
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ- 216
RT ++ H ++ M GT ++ L+S S DG+L W D NK
Sbjct: 57 RTRRTLRGHLAKIYAMH-WGT-DSRLLVSASQDGKLIIW------------DSYTTNKVH 102
Query: 217 ---TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
++ V++ A+ + N+V N+ S + GNV G LS
Sbjct: 103 AIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333
R +D + + +TSS D + LW+I+ + +F VM + +P + LF +
Sbjct: 161 R---FLDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC 215
Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
LW++ E ++ + + PNG G + +FD+
Sbjct: 216 DASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ- 216
RT ++ H ++ M GT ++ L+S S DG+L W D NK
Sbjct: 46 RTRRTLRGHLAKIYAMH-WGT-DSRLLVSASQDGKLIIW------------DSYTTNKVH 91
Query: 217 ---TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
++ V++ A+ + N+V N+ S + GNV G LS
Sbjct: 92 AIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333
R +D + + +TSS D + LW+I+ + +F VM + +P + LF +
Sbjct: 150 R---FLDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC 204
Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
LW++ E ++ + + PNG G + +FD+
Sbjct: 205 DASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ- 216
RT ++ H ++ M GT ++ L+S S DG+L W D NK
Sbjct: 46 RTRRTLRGHLAKIYAMH-WGT-DSRLLVSASQDGKLIIW------------DSYTTNKVH 91
Query: 217 ---TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
++ V++ A+ + N+V N+ S + GNV G LS
Sbjct: 92 AIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333
R +D + + +TSS D + LW+I+ + +F VM + +P + LF +
Sbjct: 150 R---FLDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC 204
Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
LW++ E ++ + + PNG G + +FD+
Sbjct: 205 DASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ- 216
RT ++ H ++ M GT ++ L+S S DG+L W D NK
Sbjct: 46 RTRRTLRGHLAKIYAMH-WGT-DSRLLLSASQDGKLIIW------------DSYTTNKVH 91
Query: 217 ---TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
++ V++ A+ + N+V N+ S + GNV G LS
Sbjct: 92 AIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333
R +D + + +TSS D + LW+I+ + +F VM + +P + LF +
Sbjct: 150 R---FLDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC 204
Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
LW++ E ++ + + PNG G + +FD+
Sbjct: 205 DASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ- 216
RT ++ H ++ M GT ++ L+S S DG+L W D NK
Sbjct: 46 RTRRTLRGHLAKIYAMH-WGT-DSRLLLSASQDGKLIIW------------DSYTTNKVH 91
Query: 217 ---TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
++ V++ A+ + N+V N+ S + GNV G LS
Sbjct: 92 AIPLRSSWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333
R +D + + +TSS D + LW+I+ + +F VM + +P + LF +
Sbjct: 150 R---FLDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC 204
Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
LW++ E ++ + + PNG G + +FD+
Sbjct: 205 DASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
++K K + + F V ++W P +P A G + LW D +V ++ ++G
Sbjct: 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW----DYDVQNKTSFIQG 114
Query: 358 APALSRVTWTP----NGTQLCVGDEKGAITMFD 386
+T N QL V +GA T+ D
Sbjct: 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
++K K + + F V ++W P +P A G + LW D +V ++ ++G
Sbjct: 58 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW----DYDVQNKTSFIQG 113
Query: 358 APALSRVTWTP----NGTQLCVGDEKGAITMFD 386
+T N QL V +GA T+ D
Sbjct: 114 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 146
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K + + D V V ++ + +L + G +W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 181 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYT 234
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQ---KKTPVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K P H P+S +
Sbjct: 115 CC--NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
S+L ++ S+D SV++W++K + + D V V ++ + +L + G +W+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399
+ + I + P +S V ++PNG + + ++D + CLK T
Sbjct: 181 TA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG--KCLKTYT 234
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 124 CCFAKFNPY--LILGGTYSGQIVLWDTRVQ---KKTPVHRTPLSVM 164
CC FNP LI+ G++ + +WD + K P H P+S +
Sbjct: 115 CC--NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 274 RAQGHIDFS----HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFA 329
RA +DF ++ S D +V ++ K +F E +V V+++P + +LFA
Sbjct: 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFA 206
Query: 330 TVEVAGRVDLWNL--NLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
+ G + L+N T V ++ V + ++ +TW+P+GT++ I ++
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Query: 386 DVGEVGI 392
+V + +
Sbjct: 267 NVATLKV 273
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV 364
V WSP N L AT + V +WN+N ++ P I++GA A+S V
Sbjct: 542 VSWSPDNVRL-ATGSLDNSVIVWNMNKPSDHP---IIIKGAHAMSSV 584
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 312 RDYVMDVQWSPINPALFATV 331
RD+V D WSP+N +L TV
Sbjct: 299 RDFVRDATWSPLNHSLLTTV 318
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL--WNLNLDTEV 348
D ++ +W + + P+ + + VQ+ P NP E G + + W LNL E
Sbjct: 166 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 225
Query: 349 PATSAIVE 356
+ + +V+
Sbjct: 226 NSQTELVK 233
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL--WNLNLDTEV 348
D ++ +W + + P+ + + VQ+ P NP E G + + W LNL E
Sbjct: 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224
Query: 349 PATSAIVE 356
+ + +V+
Sbjct: 225 NSQTELVK 232
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 71/180 (39%), Gaps = 13/180 (7%)
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG-PVVGLS 271
N K NL+ L + P D EDG ++C ++ ++ G ++ +
Sbjct: 605 NKKNITNLSRL-VVRPHTDAVYHACFSEDGQRIASC---GADKTLQVFKAETGEKLLEIK 660
Query: 272 SHRAQ----GHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS-PINPA 326
+H + T S D VK+WN + VH+++E + V ++ +
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD 386
L AT + LW+LN + + + +++ ++P+ L G + ++D
Sbjct: 721 LLATGSSDCFLKLWDLN---QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 34/192 (17%)
Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
+++ G+ + +WD + T V H V C+ ++ +N +++ S D
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 193 LCSWSLEMLSS-PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG 251
L W L SS P + Y L F + N + VG G++ ++ R
Sbjct: 229 LHVWKLPKESSVPDHGEEHDY-----------PLVFHTPEENPYFVGVLRGHM-ASVRTV 276
Query: 252 NKAGNVECYEGHEGPVVGLSSHRAQ------GHID--FSHLY-------LTSSYDWSVKL 296
+ GN+ ++ ++ + + GH D +S +Y +++S D ++++
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 297 WNIKENKPVHSF 308
W+++ + +++
Sbjct: 337 WDLENGELMYTL 348
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 31/205 (15%)
Query: 162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE-------MLSSPQETRDLQYNN 214
++ HT V CM + + ++S S D L W +E ++ R +QY+
Sbjct: 194 TLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Query: 215 KQTKNLA---VLSLAFPQNDVNNFVVGCEDGNVYSA------CRHGNKAGNVECYEGHEG 265
++ + A ++ + P+ + + VYS G+ ++ ++ G
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309
Query: 266 PVVGLSSHRAQGHIDFS-------HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
+ H GH + ++ ++ + D +VK+W+IK + + + + V
Sbjct: 310 NCI----HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Query: 319 QWSPINPALFATVEVAGRVDLWNLN 343
N T G V LW+L
Sbjct: 366 TCLQFNKNFVITSSDDGTVKLWDLK 390
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 365 TWTPNGTQLCVGDEKGAITMFDVGEVGIAC 394
T P GT +C GD A T FDV G+A
Sbjct: 212 TGVPAGTVVCGGDNFXATTKFDVQFSGVAA 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,156,530
Number of Sequences: 62578
Number of extensions: 555298
Number of successful extensions: 1460
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 191
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)