Query psy17342
Match_columns 401
No_of_seqs 704 out of 2647
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 19:50:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g56_B MGC81050 protein; prote 100.0 1.4E-48 4.7E-53 343.5 35.4 302 63-391 40-345 (357)
2 4gqb_B Methylosome protein 50; 100.0 4.6E-48 1.6E-52 337.5 34.4 292 64-391 29-333 (344)
3 1vyh_C Platelet-activating fac 100.0 9.1E-48 3.1E-52 344.8 35.9 291 63-388 106-410 (410)
4 3ow8_A WD repeat-containing pr 100.0 8.8E-48 3E-52 333.3 33.8 292 57-388 24-320 (321)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 7E-47 2.4E-51 331.5 36.2 299 63-391 13-337 (345)
6 2ynn_A Coatomer subunit beta'; 100.0 1.5E-46 5.1E-51 323.6 36.5 291 63-390 11-303 (304)
7 1got_B GT-beta; complex (GTP-b 100.0 5.4E-46 1.9E-50 325.2 37.7 286 63-386 53-340 (340)
8 2pbi_B Guanine nucleotide-bind 100.0 7.8E-46 2.7E-50 325.7 35.4 290 63-386 62-354 (354)
9 1nr0_A Actin interacting prote 100.0 1.1E-46 3.6E-51 354.9 31.5 328 9-388 162-610 (611)
10 3iz6_a 40S ribosomal protein R 100.0 1.1E-46 3.7E-51 334.7 29.5 303 63-390 64-376 (380)
11 2hes_X YDR267CP; beta-propelle 100.0 2.3E-45 7.8E-50 319.8 33.2 301 63-389 12-328 (330)
12 2xzm_R RACK1; ribosome, transl 100.0 3.9E-44 1.3E-48 314.0 38.3 290 63-390 19-341 (343)
13 2pm9_A Protein WEB1, protein t 100.0 4.3E-46 1.5E-50 335.5 26.4 343 2-390 19-415 (416)
14 3frx_A Guanine nucleotide-bind 100.0 1.7E-44 6E-49 312.7 34.3 289 63-390 15-318 (319)
15 1erj_A Transcriptional repress 100.0 2.5E-44 8.4E-49 321.0 33.5 287 63-390 62-390 (393)
16 2ymu_A WD-40 repeat protein; u 100.0 3.6E-44 1.2E-48 336.5 35.3 308 3-386 270-577 (577)
17 4gqb_B Methylosome protein 50; 100.0 1.4E-44 4.7E-49 315.5 29.5 249 64-346 81-333 (344)
18 1nr0_A Actin interacting prote 100.0 1.2E-43 4E-48 334.2 37.5 297 56-391 9-357 (611)
19 2ymu_A WD-40 repeat protein; u 100.0 5.3E-43 1.8E-47 328.6 36.8 317 3-398 229-545 (577)
20 3i2n_A WD repeat-containing pr 100.0 1.1E-42 3.7E-47 306.7 36.0 300 63-390 16-354 (357)
21 3ow8_A WD repeat-containing pr 100.0 1.8E-43 6.2E-48 306.2 30.3 273 7-343 48-320 (321)
22 4aow_A Guanine nucleotide-bind 100.0 1.3E-42 4.3E-47 304.2 36.0 292 63-391 36-339 (340)
23 1vyh_C Platelet-activating fac 100.0 1.1E-43 3.8E-48 318.3 27.8 276 3-343 116-410 (410)
24 4g56_B MGC81050 protein; prote 100.0 1.1E-43 3.7E-48 312.3 26.5 285 3-346 50-345 (357)
25 4ery_A WD repeat-containing pr 100.0 1.3E-42 4.5E-47 300.4 32.7 285 63-388 21-311 (312)
26 1k8k_C P40, ARP2/3 complex 41 100.0 3E-42 1E-46 305.7 31.5 297 64-391 7-363 (372)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-42 5.9E-47 303.6 29.6 294 2-349 23-340 (345)
28 1gxr_A ESG1, transducin-like e 100.0 2.1E-41 7.3E-46 295.9 36.3 284 63-388 49-336 (337)
29 1got_B GT-beta; complex (GTP-b 100.0 1.7E-42 5.7E-47 303.1 28.9 275 1-341 61-340 (340)
30 1r5m_A SIR4-interacting protei 100.0 1.1E-42 3.6E-47 314.0 27.2 334 2-388 52-424 (425)
31 2ynn_A Coatomer subunit beta'; 100.0 2.8E-41 9.7E-46 290.6 33.0 256 114-399 9-267 (304)
32 2pm7_B Protein transport prote 100.0 8.3E-41 2.8E-45 286.7 35.2 272 115-398 6-295 (297)
33 3dm0_A Maltose-binding peripla 100.0 2.2E-41 7.6E-46 323.8 34.2 291 63-389 380-693 (694)
34 3k26_A Polycomb protein EED; W 100.0 9.4E-42 3.2E-46 301.6 29.1 294 63-389 16-366 (366)
35 1sq9_A Antiviral protein SKI8; 100.0 8.3E-41 2.8E-45 299.1 35.3 302 63-390 14-396 (397)
36 2j04_B YDR362CP, TAU91; beta p 100.0 7.1E-42 2.4E-46 312.8 28.7 307 64-390 132-518 (524)
37 4e54_B DNA damage-binding prot 100.0 5.6E-42 1.9E-46 310.0 27.3 294 63-391 117-432 (435)
38 2pbi_B Guanine nucleotide-bind 100.0 2.5E-41 8.5E-46 297.1 30.5 278 1-341 70-354 (354)
39 2pm9_A Protein WEB1, protein t 100.0 4.1E-42 1.4E-46 309.5 26.1 308 66-391 13-339 (416)
40 3ei3_B DNA damage-binding prot 100.0 2.7E-41 9.4E-46 300.7 30.5 289 63-389 71-382 (383)
41 3vl1_A 26S proteasome regulato 100.0 6.1E-41 2.1E-45 302.3 32.8 327 2-389 63-419 (420)
42 3zwl_B Eukaryotic translation 100.0 2.4E-40 8.3E-45 292.8 35.6 295 63-391 30-348 (369)
43 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-41 1.1E-45 328.8 31.7 360 7-390 29-665 (902)
44 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-40 1.6E-44 284.5 35.1 283 63-392 16-299 (313)
45 3iz6_a 40S ribosomal protein R 100.0 3.8E-42 1.3E-46 305.4 21.3 288 1-346 72-377 (380)
46 4aez_A CDC20, WD repeat-contai 100.0 2.2E-40 7.4E-45 296.6 31.2 284 67-391 95-382 (401)
47 4gga_A P55CDC, cell division c 100.0 1.6E-39 5.5E-44 292.6 33.6 283 68-390 108-396 (420)
48 3bg1_A Protein SEC13 homolog; 100.0 1.6E-40 5.4E-45 287.5 25.8 277 112-399 7-304 (316)
49 1r5m_A SIR4-interacting protei 100.0 1E-39 3.5E-44 294.4 32.0 293 63-391 43-363 (425)
50 2oaj_A Protein SNI1; WD40 repe 100.0 3E-40 1E-44 321.9 29.4 306 63-391 56-521 (902)
51 3gre_A Serine/threonine-protei 100.0 1E-39 3.5E-44 295.8 30.8 300 63-386 61-437 (437)
52 2xzm_R RACK1; ribosome, transl 100.0 1.5E-39 5.2E-44 284.8 30.9 281 6-345 38-341 (343)
53 4ery_A WD repeat-containing pr 100.0 2.3E-39 7.7E-44 280.1 30.5 278 2-343 30-311 (312)
54 1erj_A Transcriptional repress 100.0 7.4E-40 2.5E-44 292.1 28.2 303 2-345 71-390 (393)
55 1gxr_A ESG1, transducin-like e 100.0 2.7E-39 9.1E-44 282.6 30.6 291 64-391 8-298 (337)
56 3dwl_C Actin-related protein 2 100.0 5.2E-41 1.8E-45 298.3 20.0 291 64-387 10-377 (377)
57 3dw8_B Serine/threonine-protei 100.0 1.3E-39 4.3E-44 296.0 29.4 302 63-388 26-445 (447)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-39 2.5E-43 290.8 33.6 306 7-390 129-443 (445)
59 3vl1_A 26S proteasome regulato 100.0 3.7E-39 1.3E-43 290.6 30.5 284 66-390 57-366 (420)
60 3sfz_A APAF-1, apoptotic pepti 100.0 6.2E-40 2.1E-44 333.5 28.2 356 2-391 664-1160(1249)
61 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-39 4.7E-44 331.0 30.6 330 2-391 622-1036(1249)
62 4h5i_A Guanine nucleotide-exch 100.0 1.8E-39 6.1E-44 286.2 26.3 297 66-390 15-344 (365)
63 2pm7_B Protein transport prote 100.0 2.9E-38 9.8E-43 270.9 32.6 256 63-344 7-285 (297)
64 3frx_A Guanine nucleotide-bind 100.0 2E-38 6.7E-43 274.7 31.7 255 115-390 14-268 (319)
65 3v7d_B Cell division control p 100.0 1.9E-38 6.5E-43 289.7 33.1 289 63-391 119-423 (464)
66 1yfq_A Cell cycle arrest prote 100.0 5.2E-38 1.8E-42 275.1 34.1 286 63-386 9-321 (342)
67 2hes_X YDR267CP; beta-propelle 100.0 6.3E-38 2.1E-42 272.9 34.0 259 115-391 11-282 (330)
68 1pgu_A Actin interacting prote 100.0 3.3E-39 1.1E-43 305.0 27.9 326 9-389 175-614 (615)
69 2xyi_A Probable histone-bindin 100.0 4.4E-38 1.5E-42 284.0 33.7 311 66-390 46-411 (430)
70 4ggc_A P55CDC, cell division c 100.0 4.7E-38 1.6E-42 272.5 32.6 283 68-390 28-316 (318)
71 3bg1_A Protein SEC13 homolog; 100.0 6.2E-39 2.1E-43 277.4 26.2 258 63-344 11-293 (316)
72 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-38 1.6E-42 306.6 33.9 327 1-390 19-387 (814)
73 3v7d_B Cell division control p 100.0 1.3E-37 4.5E-42 284.1 33.3 312 7-387 132-461 (464)
74 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-37 9E-42 271.1 33.7 314 63-399 9-348 (351)
75 4a11_B DNA excision repair pro 100.0 3.1E-37 1.1E-41 276.8 34.6 290 63-391 41-367 (408)
76 3mkq_A Coatomer beta'-subunit; 100.0 1E-37 3.6E-42 304.2 33.9 289 63-390 11-303 (814)
77 3mmy_A MRNA export factor; mRN 100.0 8.7E-38 3E-42 276.4 28.8 290 63-388 37-345 (368)
78 3jrp_A Fusion protein of prote 100.0 7.4E-37 2.5E-41 271.5 32.9 261 114-390 7-288 (379)
79 4gga_A P55CDC, cell division c 100.0 6.9E-37 2.3E-41 275.5 32.8 286 1-349 111-400 (420)
80 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-37 8.6E-42 279.7 30.1 280 63-391 131-416 (435)
81 4aow_A Guanine nucleotide-bind 100.0 5E-37 1.7E-41 268.6 30.9 280 7-346 51-339 (340)
82 1sq9_A Antiviral protein SKI8; 100.0 1.6E-37 5.3E-42 277.8 25.5 286 8-345 27-396 (397)
83 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-37 5.6E-42 284.0 25.8 280 7-344 173-517 (524)
84 4a11_B DNA excision repair pro 100.0 2.1E-36 7.1E-41 271.4 31.8 338 2-389 50-405 (408)
85 4e54_B DNA damage-binding prot 100.0 2E-37 6.9E-42 280.2 25.3 279 6-347 131-433 (435)
86 3i2n_A WD repeat-containing pr 100.0 8.7E-37 3E-41 268.9 28.5 287 2-346 25-355 (357)
87 1pgu_A Actin interacting prote 100.0 1.1E-36 3.8E-41 287.8 30.9 303 52-390 5-329 (615)
88 3zwl_B Eukaryotic translation 100.0 5E-36 1.7E-40 265.2 32.3 285 1-346 38-348 (369)
89 3dm0_A Maltose-binding peripla 100.0 1.4E-36 4.8E-41 290.6 30.9 278 7-344 395-693 (694)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-36 5E-41 271.9 29.0 299 68-395 37-348 (402)
91 3ei3_B DNA damage-binding prot 100.0 7.3E-37 2.5E-41 272.2 26.2 278 2-344 80-382 (383)
92 3k26_A Polycomb protein EED; W 100.0 1.1E-36 3.7E-41 269.1 26.6 290 7-344 34-366 (366)
93 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.2E-36 1.8E-40 272.0 31.4 282 63-398 116-398 (445)
94 4aez_A CDC20, WD repeat-contai 100.0 3.2E-36 1.1E-40 269.5 29.5 278 7-350 103-386 (401)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.9E-35 9.8E-40 267.3 36.1 291 66-390 5-392 (450)
96 3dwl_C Actin-related protein 2 100.0 5.3E-37 1.8E-41 272.5 23.4 250 117-391 10-283 (377)
97 4ggc_A P55CDC, cell division c 100.0 4E-35 1.4E-39 254.1 33.4 282 1-345 31-316 (318)
98 3jrp_A Fusion protein of prote 100.0 1.9E-35 6.4E-40 262.5 31.8 256 63-344 9-287 (379)
99 3gre_A Serine/threonine-protei 100.0 2.1E-37 7.1E-42 280.6 18.5 293 72-398 34-366 (437)
100 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-35 4.4E-40 263.0 28.8 249 116-389 6-274 (372)
101 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-35 1.8E-39 256.8 32.0 283 63-391 17-338 (355)
102 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-35 8.5E-40 254.7 27.8 274 5-351 27-303 (313)
103 4h5i_A Guanine nucleotide-exch 100.0 3E-36 1E-40 265.6 19.9 299 3-345 22-344 (365)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-35 1.1E-39 263.3 26.5 281 8-347 48-345 (402)
105 2xyi_A Probable histone-bindin 100.0 1.2E-34 4.3E-39 261.4 30.6 260 62-345 125-411 (430)
106 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-35 8.4E-40 263.4 24.4 268 64-388 14-296 (588)
107 3dw8_B Serine/threonine-protei 100.0 2.2E-35 7.6E-40 268.1 24.7 262 115-392 25-376 (447)
108 3jro_A Fusion protein of prote 100.0 4E-35 1.4E-39 282.1 26.1 261 114-390 5-286 (753)
109 3jro_A Fusion protein of prote 100.0 6.6E-35 2.2E-39 280.6 25.2 256 63-344 7-285 (753)
110 4gq1_A NUP37; propeller, trans 100.0 4.6E-34 1.6E-38 254.4 28.9 296 66-389 16-389 (393)
111 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-34 1.3E-38 258.9 27.1 268 7-349 143-419 (435)
112 1yfq_A Cell cycle arrest prote 100.0 6.4E-34 2.2E-38 249.1 27.2 275 2-342 18-322 (342)
113 2j04_A TAU60, YPL007P, hypothe 100.0 5.3E-35 1.8E-39 261.2 19.5 312 2-378 22-350 (588)
114 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-34 1.4E-38 250.3 23.5 275 71-391 42-335 (343)
115 3mmy_A MRNA export factor; mRN 100.0 1.4E-33 4.8E-38 249.3 23.5 275 7-345 54-347 (368)
116 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-33 7.6E-38 246.1 22.5 299 1-352 17-345 (351)
117 1l0q_A Surface layer protein; 100.0 2.1E-32 7.2E-37 244.1 28.7 315 8-391 3-344 (391)
118 3bws_A Protein LP49; two-domai 100.0 4.8E-32 1.6E-36 245.1 30.1 281 66-389 123-432 (433)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-31 4.4E-36 243.3 31.0 253 118-387 4-337 (450)
120 4gq1_A NUP37; propeller, trans 100.0 7.9E-33 2.7E-37 246.5 22.0 257 64-343 88-388 (393)
121 1l0q_A Surface layer protein; 100.0 1.1E-30 3.8E-35 232.9 30.4 266 95-398 10-282 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-31 4.2E-36 234.6 23.6 267 6-343 47-332 (343)
123 2w18_A PALB2, fancn, partner a 100.0 2.6E-30 8.8E-35 217.2 26.4 284 67-388 41-356 (356)
124 3bws_A Protein LP49; two-domai 100.0 3.7E-29 1.3E-33 226.1 30.9 300 65-391 60-392 (433)
125 3vu4_A KMHSV2; beta-propeller 100.0 3.9E-30 1.3E-34 225.9 23.5 250 101-391 3-273 (355)
126 1nir_A Nitrite reductase; hemo 100.0 4.7E-29 1.6E-33 230.0 29.2 330 7-399 149-522 (543)
127 2w18_A PALB2, fancn, partner a 100.0 2.3E-28 7.8E-33 205.5 18.1 190 130-342 144-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.3E-26 7.7E-31 206.0 28.4 250 77-371 143-410 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.2E-27 1.8E-31 210.1 23.8 285 66-392 63-390 (415)
130 2z3z_A Dipeptidyl aminopeptida 100.0 2.3E-26 7.9E-31 220.7 29.2 331 2-391 32-437 (706)
131 1ri6_A Putative isomerase YBHE 100.0 9.6E-26 3.3E-30 197.1 28.5 284 95-400 13-321 (343)
132 1nir_A Nitrite reductase; hemo 100.0 5.8E-26 2E-30 209.4 27.1 286 72-391 144-460 (543)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3E-25 1E-29 214.1 28.8 290 66-389 37-413 (741)
134 3u4y_A Uncharacterized protein 99.9 1.9E-25 6.5E-30 194.4 24.3 288 71-394 3-309 (331)
135 2ojh_A Uncharacterized protein 99.9 8.1E-25 2.8E-29 187.0 27.3 257 94-380 19-293 (297)
136 1ri6_A Putative isomerase YBHE 99.9 5.7E-25 2E-29 192.2 26.6 306 10-370 8-334 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 4.8E-25 1.7E-29 212.7 28.0 339 2-390 43-460 (741)
138 3hfq_A Uncharacterized protein 99.9 5.1E-24 1.7E-28 186.6 28.8 287 95-395 14-325 (347)
139 3vgz_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 185.7 29.4 286 65-380 40-335 (353)
140 1pby_B Quinohemoprotein amine 99.9 2.2E-24 7.5E-29 188.0 23.1 278 79-399 3-318 (337)
141 2ojh_A Uncharacterized protein 99.9 2.8E-24 9.6E-29 183.6 21.3 233 64-334 40-292 (297)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-23 7E-28 200.8 29.6 327 2-377 23-428 (723)
143 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-24 1.1E-28 206.5 23.7 291 67-390 18-394 (723)
144 1k32_A Tricorn protease; prote 99.9 2.5E-23 8.5E-28 207.5 28.3 293 64-393 51-413 (1045)
145 3u4y_A Uncharacterized protein 99.9 1.6E-22 5.5E-27 175.9 26.1 278 8-345 11-305 (331)
146 1pby_B Quinohemoprotein amine 99.9 1.1E-23 3.9E-28 183.5 18.6 276 8-352 2-318 (337)
147 3scy_A Hypothetical bacterial 99.9 1.1E-21 3.8E-26 172.7 31.5 294 74-392 10-342 (361)
148 1k32_A Tricorn protease; prote 99.9 7.6E-23 2.6E-27 204.0 26.8 283 67-393 246-604 (1045)
149 1jmx_B Amine dehydrogenase; ox 99.9 1.6E-22 5.4E-27 177.2 24.2 282 70-398 4-332 (349)
150 2z3z_A Dipeptidyl aminopeptida 99.9 4.1E-23 1.4E-27 198.1 20.5 287 68-394 28-396 (706)
151 3o4h_A Acylamino-acid-releasin 99.9 4.3E-23 1.5E-27 193.4 20.1 270 65-389 21-315 (582)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 3.2E-22 1.1E-26 179.6 23.5 269 97-388 23-332 (434)
153 3hfq_A Uncharacterized protein 99.9 5E-21 1.7E-25 167.6 30.4 255 66-343 40-316 (347)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 9.6E-23 3.3E-27 183.0 18.3 212 168-390 37-279 (434)
155 1z68_A Fibroblast activation p 99.9 3.4E-22 1.2E-26 192.1 23.3 340 2-391 22-445 (719)
156 3vgz_A Uncharacterized protein 99.9 8.7E-21 3E-25 166.4 27.2 251 117-391 39-305 (353)
157 3scy_A Hypothetical bacterial 99.9 7.6E-20 2.6E-24 160.9 30.5 278 66-367 50-360 (361)
158 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.4E-20 1.5E-24 162.6 27.6 278 97-393 14-345 (365)
159 1z68_A Fibroblast activation p 99.9 3.4E-21 1.2E-25 185.1 19.6 283 70-389 20-391 (719)
160 1jmx_B Amine dehydrogenase; ox 99.9 9.9E-21 3.4E-25 165.7 18.4 290 4-352 8-333 (349)
161 3o4h_A Acylamino-acid-releasin 99.9 3.6E-20 1.2E-24 173.6 20.0 232 118-387 21-274 (582)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.9E-19 2E-23 155.4 22.0 254 66-345 40-342 (365)
163 3pe7_A Oligogalacturonate lyas 99.8 1.7E-19 5.8E-24 160.3 18.4 279 71-389 41-382 (388)
164 4a5s_A Dipeptidyl peptidase 4 99.8 3.8E-18 1.3E-22 164.1 28.1 342 2-391 23-451 (740)
165 2oiz_A Aromatic amine dehydrog 99.8 5E-18 1.7E-22 148.8 24.8 277 70-371 54-360 (361)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.7E-22 161.0 28.1 287 67-389 18-398 (740)
167 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-17 1.2E-21 141.8 25.6 255 118-390 23-323 (329)
168 2oiz_A Aromatic amine dehydrog 99.8 5.2E-17 1.8E-21 142.3 26.3 273 96-398 30-343 (361)
169 1q7f_A NHL, brain tumor CG1071 99.8 4.7E-16 1.6E-20 132.0 30.0 247 118-390 29-281 (286)
170 1q7f_A NHL, brain tumor CG1071 99.8 4.2E-16 1.4E-20 132.3 28.2 242 65-346 29-282 (286)
171 3fvz_A Peptidyl-glycine alpha- 99.8 7.5E-17 2.6E-21 139.7 22.8 269 66-345 24-323 (329)
172 3azo_A Aminopeptidase; POP fam 99.8 7E-17 2.4E-21 153.7 24.0 297 64-395 22-375 (662)
173 1qks_A Cytochrome CD1 nitrite 99.8 4E-15 1.4E-19 136.9 34.6 301 66-399 197-546 (567)
174 3c5m_A Oligogalacturonate lyas 99.8 4.6E-18 1.6E-22 151.4 14.5 281 67-391 37-386 (396)
175 2dg1_A DRP35, lactonase; beta 99.8 4.2E-16 1.4E-20 135.4 23.9 273 66-379 6-300 (333)
176 3pe7_A Oligogalacturonate lyas 99.7 2.1E-16 7.3E-21 140.3 20.6 243 124-395 41-335 (388)
177 2gop_A Trilobed protease; beta 99.7 6E-16 2.1E-20 135.2 22.8 272 66-395 15-336 (347)
178 2z2n_A Virginiamycin B lyase; 99.7 2.9E-14 1E-18 121.6 32.3 280 66-391 15-297 (299)
179 3azo_A Aminopeptidase; POP fam 99.7 9.1E-16 3.1E-20 146.0 24.6 250 116-388 21-322 (662)
180 2xdw_A Prolyl endopeptidase; a 99.7 3.6E-15 1.2E-19 142.8 28.4 256 66-346 125-416 (710)
181 3e5z_A Putative gluconolactona 99.7 8.4E-15 2.9E-19 124.9 27.1 245 116-394 25-291 (296)
182 2xdw_A Prolyl endopeptidase; a 99.7 3.7E-15 1.3E-19 142.8 27.4 284 75-391 81-416 (710)
183 2bkl_A Prolyl endopeptidase; m 99.7 1E-15 3.5E-20 146.2 22.7 288 74-396 76-404 (695)
184 2dg1_A DRP35, lactonase; beta 99.7 1.2E-13 4E-18 119.9 29.7 230 66-332 45-299 (333)
185 3dsm_A Uncharacterized protein 99.7 1.6E-14 5.5E-19 124.8 24.0 274 95-400 15-310 (328)
186 1rwi_B Serine/threonine-protei 99.7 2.8E-14 9.7E-19 119.8 24.6 241 120-391 25-266 (270)
187 3c5m_A Oligogalacturonate lyas 99.7 4.8E-16 1.6E-20 138.3 12.7 233 70-342 85-380 (396)
188 1rwi_B Serine/threonine-protei 99.7 4.5E-14 1.6E-18 118.6 23.7 242 67-346 25-266 (270)
189 1yr2_A Prolyl oligopeptidase; 99.7 1.6E-14 5.4E-19 139.0 22.4 289 74-395 115-447 (741)
190 3e5z_A Putative gluconolactona 99.6 4.1E-14 1.4E-18 120.6 22.1 240 66-346 28-288 (296)
191 1qks_A Cytochrome CD1 nitrite 99.6 3.2E-13 1.1E-17 124.4 29.2 275 95-390 175-478 (567)
192 2qc5_A Streptogramin B lactona 99.6 1.9E-12 6.4E-17 110.4 31.0 278 66-388 20-299 (300)
193 2gop_A Trilobed protease; beta 99.6 9.4E-14 3.2E-18 121.2 22.9 229 66-343 59-330 (347)
194 2bkl_A Prolyl endopeptidase; m 99.6 8.3E-14 2.8E-18 133.0 24.3 253 64-346 119-399 (695)
195 3no2_A Uncharacterized protein 99.6 2.4E-13 8.2E-18 114.1 22.8 215 132-377 6-231 (276)
196 2mad_H Methylamine dehydrogena 99.6 2.9E-12 9.8E-17 112.3 30.3 267 98-397 48-356 (373)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.3E-12 8E-17 110.6 29.0 248 118-391 17-301 (314)
198 3sjl_D Methylamine dehydrogena 99.6 7.1E-13 2.4E-17 114.6 25.0 294 71-400 38-372 (386)
199 3no2_A Uncharacterized protein 99.6 8.9E-13 3.1E-17 110.6 23.5 211 95-331 13-230 (276)
200 3sjl_D Methylamine dehydrogena 99.6 4.3E-13 1.5E-17 116.0 21.1 275 70-369 82-384 (386)
201 2z2n_A Virginiamycin B lyase; 99.6 1.2E-11 4.3E-16 105.2 30.1 239 118-387 14-253 (299)
202 3dsm_A Uncharacterized protein 99.6 7.3E-13 2.5E-17 114.4 21.5 247 67-352 45-309 (328)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.9E-12 6.6E-17 111.2 23.6 246 66-345 18-300 (314)
204 1yr2_A Prolyl oligopeptidase; 99.5 3.5E-12 1.2E-16 122.7 25.8 253 66-346 163-443 (741)
205 3g4e_A Regucalcin; six bladed 99.5 1.7E-11 5.8E-16 104.3 27.0 234 67-334 14-263 (297)
206 3c75_H MADH, methylamine dehyd 99.5 5.6E-12 1.9E-16 111.0 23.4 284 75-398 82-409 (426)
207 2mad_H Methylamine dehydrogena 99.5 3.3E-11 1.1E-15 105.6 27.6 257 70-350 70-356 (373)
208 3g4e_A Regucalcin; six bladed 99.5 3.6E-11 1.2E-15 102.3 26.0 227 120-377 14-260 (297)
209 1xip_A Nucleoporin NUP159; bet 99.5 2.2E-12 7.4E-17 112.1 17.3 176 66-288 38-231 (388)
210 1xip_A Nucleoporin NUP159; bet 99.5 9.4E-13 3.2E-17 114.4 14.1 179 169-375 39-230 (388)
211 3hrp_A Uncharacterized protein 99.5 8.3E-11 2.9E-15 104.5 27.0 245 119-388 131-409 (409)
212 2qc5_A Streptogramin B lactona 99.4 3.7E-10 1.3E-14 96.0 29.0 238 118-387 19-258 (300)
213 3iuj_A Prolyl endopeptidase; h 99.4 2.8E-11 9.6E-16 115.4 24.0 251 119-396 129-412 (693)
214 3hrp_A Uncharacterized protein 99.4 6E-11 2.1E-15 105.4 24.3 243 66-342 131-408 (409)
215 2ghs_A AGR_C_1268P; regucalcin 99.4 2.8E-10 9.6E-15 98.1 26.6 225 121-378 51-291 (326)
216 3iuj_A Prolyl endopeptidase; h 99.4 1.3E-10 4.4E-15 110.8 24.8 252 64-346 127-407 (693)
217 3c75_H MADH, methylamine dehyd 99.4 4.1E-11 1.4E-15 105.6 19.4 258 70-351 122-409 (426)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-09 3.9E-14 94.3 28.1 231 68-334 51-293 (326)
219 3dr2_A Exported gluconolactona 99.3 6E-10 2.1E-14 95.1 23.6 231 115-380 41-298 (305)
220 1mda_H Methylamine dehydrogena 99.3 6.6E-11 2.2E-15 102.6 16.3 267 98-401 47-356 (368)
221 2qe8_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 95.1 21.4 248 119-382 17-314 (343)
222 1mda_H Methylamine dehydrogena 99.3 7.2E-10 2.5E-14 96.1 19.8 263 70-368 69-366 (368)
223 2ece_A 462AA long hypothetical 99.2 9E-09 3.1E-13 89.8 26.0 233 128-377 93-399 (462)
224 3dr2_A Exported gluconolactona 99.2 4.8E-09 1.7E-13 89.5 22.7 235 66-341 45-303 (305)
225 1kb0_A Quinohemoprotein alcoho 99.2 1.9E-09 6.6E-14 101.9 19.3 279 95-398 85-514 (677)
226 2hz6_A Endoplasmic reticulum t 99.1 4.1E-11 1.4E-15 105.1 6.0 185 180-392 8-195 (369)
227 2qe8_A Uncharacterized protein 99.1 2.5E-09 8.5E-14 92.9 16.4 233 64-339 65-316 (343)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.2E-08 2.8E-12 84.4 26.0 270 77-386 103-375 (376)
229 1fwx_A Nitrous oxide reductase 99.1 2.8E-09 9.6E-14 96.3 16.4 271 75-400 99-442 (595)
230 1kb0_A Quinohemoprotein alcoho 99.1 1.9E-08 6.4E-13 95.2 22.5 284 77-389 128-567 (677)
231 1yiq_A Quinohemoprotein alcoho 99.1 1.7E-08 5.8E-13 95.7 21.8 283 77-391 70-507 (689)
232 1npe_A Nidogen, entactin; glyc 99.1 3.1E-07 1.1E-11 76.6 27.0 247 96-371 9-263 (267)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.3E-07 4.4E-12 83.2 25.0 273 77-392 53-340 (376)
234 3hxj_A Pyrrolo-quinoline quino 99.0 1.6E-08 5.6E-13 87.1 18.5 266 66-390 60-325 (330)
235 2ece_A 462AA long hypothetical 99.0 7.8E-08 2.7E-12 84.0 20.2 212 179-400 93-364 (462)
236 2hz6_A Endoplasmic reticulum t 99.0 4.7E-10 1.6E-14 98.3 6.4 202 132-371 10-216 (369)
237 1yiq_A Quinohemoprotein alcoho 99.0 3.3E-08 1.1E-12 93.8 19.2 80 291-374 454-533 (689)
238 1npe_A Nidogen, entactin; glyc 98.9 3.7E-06 1.3E-10 69.9 27.9 233 141-399 10-246 (267)
239 3hxj_A Pyrrolo-quinoline quino 98.9 1.3E-08 4.5E-13 87.7 12.6 260 71-390 25-284 (330)
240 1fwx_A Nitrous oxide reductase 98.9 3E-07 1E-11 83.2 20.3 194 179-389 99-361 (595)
241 1kv9_A Type II quinohemoprotei 98.9 2E-07 6.8E-12 88.1 19.7 282 77-391 66-490 (668)
242 4a2l_A BT_4663, two-component 98.9 5.4E-06 1.9E-10 80.4 30.1 287 65-391 262-573 (795)
243 4a2l_A BT_4663, two-component 98.9 6.1E-06 2.1E-10 80.1 30.4 290 68-392 175-483 (795)
244 2iwa_A Glutamine cyclotransfer 98.8 3.6E-06 1.2E-10 69.0 21.6 198 120-346 22-239 (266)
245 2fp8_A Strictosidine synthase; 98.8 4.8E-06 1.6E-10 71.4 23.7 242 68-345 21-314 (322)
246 2iwa_A Glutamine cyclotransfer 98.8 1.9E-06 6.5E-11 70.6 19.8 199 169-390 22-238 (266)
247 3v64_C Agrin; beta propeller, 98.8 5.2E-05 1.8E-09 65.6 30.2 247 66-351 34-282 (349)
248 3v9f_A Two-component system se 98.8 8.3E-06 2.9E-10 79.0 27.8 290 65-392 257-571 (781)
249 3v65_B Low-density lipoprotein 98.7 4.1E-05 1.4E-09 67.2 29.1 230 96-352 95-326 (386)
250 3qqz_A Putative uncharacterize 98.7 5.6E-06 1.9E-10 67.4 21.7 211 66-298 27-250 (255)
251 2xe4_A Oligopeptidase B; hydro 98.7 2.6E-06 8.8E-11 81.9 22.7 251 120-396 175-465 (751)
252 2fp8_A Strictosidine synthase; 98.7 5E-06 1.7E-10 71.3 22.3 250 119-390 19-314 (322)
253 3nol_A Glutamine cyclotransfer 98.7 1.9E-06 6.4E-11 69.8 17.9 193 169-387 44-252 (262)
254 1ijq_A LDL receptor, low-densi 98.7 9E-05 3.1E-09 63.2 28.7 229 140-391 9-240 (316)
255 2ad6_A Methanol dehydrogenase 98.7 5.8E-06 2E-10 76.6 22.4 104 283-391 317-496 (571)
256 3sov_A LRP-6, low-density lipo 98.6 0.00011 3.7E-09 62.6 28.0 231 96-351 12-245 (318)
257 1kv9_A Type II quinohemoprotei 98.6 2.5E-06 8.5E-11 80.7 19.0 83 291-377 437-520 (668)
258 3nok_A Glutaminyl cyclase; bet 98.6 8.6E-06 2.9E-10 65.9 19.1 184 169-378 56-254 (268)
259 1k3i_A Galactose oxidase precu 98.6 2.9E-06 1E-10 80.3 19.1 253 122-396 189-504 (656)
260 2xe4_A Oligopeptidase B; hydro 98.6 4.2E-05 1.4E-09 73.5 27.3 252 67-346 175-460 (751)
261 3qqz_A Putative uncharacterize 98.6 0.00011 3.6E-09 59.9 25.5 207 118-342 26-251 (255)
262 3v65_B Low-density lipoprotein 98.6 5.7E-05 1.9E-09 66.4 25.6 222 140-390 95-319 (386)
263 1k3i_A Galactose oxidase precu 98.6 3.2E-06 1.1E-10 80.0 18.4 285 70-378 190-530 (656)
264 3v9f_A Two-component system se 98.6 0.00035 1.2E-08 67.6 32.9 292 66-391 211-526 (781)
265 3v64_C Agrin; beta propeller, 98.6 0.00014 4.8E-09 62.9 27.1 238 121-390 36-276 (349)
266 3mbr_X Glutamine cyclotransfer 98.6 1.3E-05 4.6E-10 64.2 18.9 194 168-387 21-231 (243)
267 2p4o_A Hypothetical protein; p 98.5 8.7E-05 3E-09 63.0 25.0 235 66-332 32-277 (306)
268 1w6s_A Methanol dehydrogenase 98.5 1.4E-05 4.9E-10 74.0 21.4 275 96-392 72-506 (599)
269 2p4o_A Hypothetical protein; p 98.5 8E-05 2.7E-09 63.2 24.2 231 119-379 32-278 (306)
270 1ijq_A LDL receptor, low-densi 98.5 0.00037 1.3E-08 59.3 29.2 227 96-351 9-245 (316)
271 3p5b_L Low density lipoprotein 98.5 0.00056 1.9E-08 60.3 30.1 229 139-390 90-321 (400)
272 1flg_A Protein (quinoprotein e 98.5 5.3E-05 1.8E-09 70.3 23.4 106 283-392 337-519 (582)
273 3nol_A Glutamine cyclotransfer 98.4 2.6E-05 9E-10 63.1 17.8 186 66-288 43-243 (262)
274 2ad6_A Methanol dehydrogenase 98.4 3.1E-05 1E-09 71.8 20.2 81 291-375 443-523 (571)
275 1flg_A Protein (quinoprotein e 98.4 0.00025 8.6E-09 65.7 26.1 80 291-374 465-544 (582)
276 3p5b_L Low density lipoprotein 98.4 0.0011 3.9E-08 58.3 30.5 232 96-351 91-327 (400)
277 3ei3_A DNA damage-binding prot 98.4 0.00094 3.2E-08 66.8 30.1 144 232-389 844-999 (1158)
278 1w6s_A Methanol dehydrogenase 98.3 0.00026 8.8E-09 65.7 24.4 78 291-372 452-529 (599)
279 3sov_A LRP-6, low-density lipo 98.3 0.00088 3E-08 56.9 26.0 210 67-310 36-247 (318)
280 3nok_A Glutaminyl cyclase; bet 98.3 2.4E-05 8.2E-10 63.4 15.2 159 222-398 57-217 (268)
281 3mbr_X Glutamine cyclotransfer 98.3 0.00016 5.3E-09 58.1 19.6 189 66-288 21-222 (243)
282 3tc9_A Hypothetical hydrolase; 98.3 0.00079 2.7E-08 59.9 25.0 241 120-388 138-429 (430)
283 3tc9_A Hypothetical hydrolase; 98.3 0.00035 1.2E-08 62.2 22.6 246 67-343 138-429 (430)
284 3m0c_C LDL receptor, low-densi 98.3 0.0017 5.7E-08 62.3 28.3 227 140-390 403-633 (791)
285 2xbg_A YCF48-like protein; pho 98.2 0.0017 5.7E-08 55.5 27.5 277 66-386 36-319 (327)
286 3m0c_C LDL receptor, low-densi 98.2 0.0019 6.5E-08 61.9 28.1 233 96-351 403-639 (791)
287 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0041 1.4E-07 58.1 29.5 226 96-348 14-241 (628)
288 4hw6_A Hypothetical protein, I 98.2 0.0031 1.1E-07 56.1 27.5 240 120-388 140-432 (433)
289 1n7d_A LDL receptor, low-densi 98.2 3E-05 1E-09 73.5 14.4 227 140-390 385-615 (699)
290 3s94_A LRP-6, low-density lipo 98.2 0.0049 1.7E-07 57.6 30.9 290 66-391 40-382 (619)
291 2xzh_A Clathrin heavy chain 1; 98.1 0.0037 1.3E-07 52.0 28.1 265 96-391 48-334 (365)
292 2p9w_A MAL S 1 allergenic prot 98.0 0.00049 1.7E-08 57.7 16.5 160 221-389 14-215 (334)
293 2ism_A Putative oxidoreductase 98.0 0.0073 2.5E-07 52.1 25.4 234 67-331 32-332 (352)
294 3amr_A 3-phytase; beta-propell 97.9 0.0068 2.3E-07 51.4 22.7 199 180-399 39-272 (355)
295 3sre_A PON1, serum paraoxonase 97.9 0.0074 2.5E-07 51.7 23.3 198 170-377 52-285 (355)
296 1n7d_A LDL receptor, low-densi 97.9 2.6E-05 9E-10 74.0 8.6 223 66-320 406-633 (699)
297 3kya_A Putative phosphatase; s 97.9 0.0044 1.5E-07 55.5 22.2 253 67-347 140-478 (496)
298 3ei3_A DNA damage-binding prot 97.8 0.032 1.1E-06 56.0 34.2 99 96-199 531-635 (1158)
299 4a0p_A LRP6, LRP-6, low-densit 97.8 0.021 7.3E-07 53.3 30.2 230 132-391 8-239 (628)
300 3s94_A LRP-6, low-density lipo 97.8 0.022 7.6E-07 53.2 31.8 296 67-389 128-467 (619)
301 4hw6_A Hypothetical protein, I 97.8 0.0026 8.9E-08 56.6 19.2 200 169-387 140-372 (433)
302 3amr_A 3-phytase; beta-propell 97.8 0.0051 1.7E-07 52.1 19.1 204 132-351 41-271 (355)
303 2vpj_A Kelch-like protein 12; 97.7 0.0034 1.2E-07 52.8 17.9 238 132-399 16-288 (301)
304 2p9w_A MAL S 1 allergenic prot 97.7 0.0064 2.2E-07 51.1 18.3 164 168-344 13-215 (334)
305 2ism_A Putative oxidoreductase 97.7 0.022 7.4E-07 49.2 26.6 240 118-377 30-333 (352)
306 3kya_A Putative phosphatase; s 97.6 0.031 1.1E-06 50.1 27.7 253 120-390 140-476 (496)
307 3ii7_A Kelch-like protein 7; p 97.6 0.0043 1.5E-07 52.4 17.3 237 132-399 13-282 (306)
308 2g8s_A Glucose/sorbosone dehyd 97.6 0.028 9.6E-07 48.4 25.6 244 66-330 18-339 (353)
309 3pbp_A Nucleoporin NUP82; beta 97.6 0.018 6.3E-07 49.9 19.9 145 230-384 30-207 (452)
310 2xn4_A Kelch-like protein 2; s 97.6 0.0036 1.2E-07 52.7 15.9 194 180-396 61-283 (302)
311 2xbg_A YCF48-like protein; pho 97.6 0.03 1E-06 47.7 28.8 235 118-382 35-272 (327)
312 3pbp_A Nucleoporin NUP82; beta 97.5 0.032 1.1E-06 48.4 20.0 158 73-247 28-208 (452)
313 1bpo_A Protein (clathrin); cla 97.5 0.048 1.6E-06 47.5 30.2 266 95-391 46-333 (494)
314 1zgk_A Kelch-like ECH-associat 97.4 0.011 3.6E-07 50.0 16.2 238 131-399 25-297 (308)
315 2xzh_A Clathrin heavy chain 1; 97.2 0.07 2.4E-06 44.6 25.9 243 71-349 72-337 (365)
316 3a9g_A Putative uncharacterize 97.2 0.093 3.2E-06 45.2 24.1 242 66-331 29-329 (354)
317 3sre_A PON1, serum paraoxonase 97.2 0.097 3.3E-06 44.9 23.0 184 139-342 81-296 (355)
318 1xi4_A Clathrin heavy chain; a 97.1 0.2 6.7E-06 50.7 23.7 265 95-390 46-332 (1630)
319 3a9g_A Putative uncharacterize 97.0 0.15 5.3E-06 43.8 27.6 242 118-377 28-330 (354)
320 2g8s_A Glucose/sorbosone dehyd 97.0 0.16 5.3E-06 43.8 26.1 255 119-387 18-350 (353)
321 4asc_A Kelch repeat and BTB do 96.9 0.11 3.7E-06 43.9 17.7 220 97-346 13-279 (315)
322 2vpj_A Kelch-like protein 12; 96.8 0.045 1.5E-06 45.8 15.1 153 231-398 62-240 (301)
323 4asc_A Kelch repeat and BTB do 96.8 0.075 2.6E-06 44.9 16.3 150 231-395 98-283 (315)
324 2xn4_A Kelch-like protein 2; s 96.7 0.074 2.5E-06 44.5 15.0 220 97-346 30-278 (302)
325 2uvk_A YJHT; unknown function, 96.6 0.048 1.6E-06 47.0 13.8 55 293-350 286-348 (357)
326 1bpo_A Protein (clathrin); cla 96.6 0.32 1.1E-05 42.5 27.7 244 70-349 70-336 (494)
327 1cru_A Protein (soluble quinop 96.6 0.14 4.9E-06 45.7 16.8 108 221-332 28-162 (454)
328 3ii7_A Kelch-like protein 7; p 96.5 0.064 2.2E-06 45.0 13.9 153 231-398 55-234 (306)
329 3ott_A Two-component system se 96.5 0.66 2.3E-05 44.6 28.1 272 65-385 21-303 (758)
330 2woz_A Kelch repeat and BTB do 96.4 0.21 7.2E-06 42.1 16.6 151 231-395 109-293 (318)
331 1xi4_A Clathrin heavy chain; a 96.4 0.4 1.4E-05 48.6 19.9 220 140-391 47-291 (1630)
332 3ott_A Two-component system se 96.4 0.71 2.4E-05 44.3 31.1 290 67-392 192-505 (758)
333 2uvk_A YJHT; unknown function, 96.3 0.17 6E-06 43.4 15.5 60 336-398 286-351 (357)
334 2woz_A Kelch repeat and BTB do 96.3 0.31 1.1E-05 41.0 16.7 65 231-303 158-233 (318)
335 1zgk_A Kelch-like ECH-associat 96.3 0.1 3.6E-06 43.8 13.6 236 75-346 23-289 (308)
336 1tl2_A L10, protein (tachylect 96.0 0.4 1.4E-05 37.6 15.5 149 220-389 41-208 (236)
337 3das_A Putative oxidoreductase 96.0 0.62 2.1E-05 39.7 23.8 238 66-330 32-324 (347)
338 3das_A Putative oxidoreductase 95.9 0.71 2.4E-05 39.3 27.6 244 118-377 31-326 (347)
339 1tl2_A L10, protein (tachylect 95.8 0.29 1E-05 38.4 12.5 139 231-383 3-157 (236)
340 2be1_A Serine/threonine-protei 95.4 0.18 6.3E-06 42.7 11.3 107 282-392 111-234 (339)
341 2zwa_A Leucine carboxyl methyl 94.4 1.8 6.2E-05 41.0 16.5 200 130-346 397-637 (695)
342 1sqj_A OXG-RCBH, oligoxylogluc 94.1 4.5 0.00015 39.0 20.3 163 118-291 14-190 (789)
343 2zwa_A Leucine carboxyl methyl 93.7 2 6.9E-05 40.7 15.2 155 231-393 451-639 (695)
344 3sbq_A Nitrous-oxide reductase 93.1 5 0.00017 36.4 20.6 148 243-398 299-487 (638)
345 3sbq_A Nitrous-oxide reductase 92.5 0.52 1.8E-05 42.6 8.4 98 293-390 299-409 (638)
346 2be1_A Serine/threonine-protei 92.3 0.29 9.9E-06 41.5 6.6 108 282-391 10-132 (339)
347 3qhy_B Beta-lactamase inhibito 90.8 6 0.0002 32.5 26.4 224 118-389 23-246 (282)
348 3s25_A Hypothetical 7-bladed b 90.5 6.7 0.00023 32.6 19.8 139 226-390 110-256 (302)
349 3b7f_A Glycosyl hydrolase, BNR 89.6 9.5 0.00033 33.0 24.2 113 221-340 116-258 (394)
350 1cru_A Protein (soluble quinop 87.8 14 0.00049 32.7 28.4 114 118-239 26-162 (454)
351 2wg3_C Hedgehog-interacting pr 86.8 17 0.00057 32.4 28.2 112 66-191 14-160 (463)
352 3s25_A Hypothetical 7-bladed b 86.7 13 0.00043 30.9 20.6 250 74-387 22-291 (302)
353 3b7f_A Glycosyl hydrolase, BNR 86.2 16 0.00054 31.6 28.8 157 220-383 177-366 (394)
354 2wg3_C Hedgehog-interacting pr 84.1 22 0.00077 31.6 29.9 260 119-389 14-371 (463)
355 3no0_A DNA gyrase subunit A; D 83.1 18 0.0006 29.6 22.2 162 66-250 24-195 (276)
356 4hvt_A Ritya.17583.B, post-pro 82.4 34 0.0012 32.4 21.8 247 68-343 131-429 (711)
357 1suu_A DNA gyrase subunit A; t 82.2 21 0.00071 29.8 22.4 198 179-389 6-231 (312)
358 4hvt_A Ritya.17583.B, post-pro 80.6 40 0.0014 32.0 23.8 102 290-395 318-435 (711)
359 3uc1_A DNA gyrase subunit A; D 73.9 39 0.0013 28.4 20.4 243 132-389 4-279 (327)
360 4gq2_M Nucleoporin NUP120; bet 73.1 14 0.00048 36.5 9.1 37 359-397 236-272 (950)
361 3uc1_A DNA gyrase subunit A; D 72.3 43 0.0015 28.1 24.4 168 66-250 42-227 (327)
362 3qhy_B Beta-lactamase inhibito 72.2 39 0.0013 27.6 24.9 210 96-348 41-250 (282)
363 4gq2_M Nucleoporin NUP120; bet 71.6 82 0.0028 31.1 21.8 37 267-309 238-274 (950)
364 3q6k_A 43.2 kDa salivary prote 67.8 59 0.002 28.0 22.1 180 66-251 87-306 (381)
365 4fhn_B Nucleoporin NUP120; pro 64.4 1.3E+02 0.0043 30.6 16.6 36 360-397 239-274 (1139)
366 3zwu_A Alkaline phosphatase PH 63.1 23 0.00077 32.7 7.6 59 315-376 478-548 (592)
367 1zi0_A DNA gyrase subunit A; b 59.0 76 0.0026 26.3 25.5 243 75-344 1-277 (307)
368 3zwu_A Alkaline phosphatase PH 58.1 23 0.00078 32.6 6.7 68 68-136 478-548 (592)
369 1zi0_A DNA gyrase subunit A; b 56.8 83 0.0029 26.0 25.3 242 132-389 4-277 (307)
370 4a9v_A PHOX; hydrolase, beta-p 53.2 50 0.0017 30.2 7.9 61 314-377 477-549 (592)
371 4a9v_A PHOX; hydrolase, beta-p 53.1 43 0.0015 30.6 7.5 70 66-137 476-549 (592)
372 3no0_A DNA gyrase subunit A; D 51.4 97 0.0033 25.2 20.3 201 167-389 23-246 (276)
373 3l6v_A GYRA, DNA gyrase subuni 47.1 1.4E+02 0.0046 25.6 26.9 159 73-250 3-179 (370)
374 3f7f_A Nucleoporin NUP120; nuc 45.3 24 0.00084 33.2 4.8 29 282-310 231-259 (729)
375 2cn3_A Xyloglucanase, beta-1,4 44.5 2.1E+02 0.0073 27.1 18.8 66 169-239 24-91 (737)
376 2cn3_A Xyloglucanase, beta-1,4 41.4 2.4E+02 0.0082 26.8 23.9 118 120-241 24-153 (737)
377 1wp5_A Topoisomerase IV; broke 41.4 1.5E+02 0.0053 24.6 23.2 247 128-389 3-277 (323)
378 4fhn_B Nucleoporin NUP120; pro 40.8 3E+02 0.01 27.8 19.1 28 282-309 249-276 (1139)
379 1sqj_A OXG-RCBH, oligoxylogluc 40.4 2.6E+02 0.0088 26.9 23.5 164 66-246 15-196 (789)
380 3f7f_A Nucleoporin NUP120; nuc 40.2 35 0.0012 32.2 5.0 31 359-391 222-252 (729)
381 1q47_A Semaphorin 3A; beta pro 37.5 1.6E+02 0.0054 26.5 8.7 71 314-384 405-487 (495)
382 1olz_A Semaphorin 4D; developm 36.1 89 0.003 29.3 7.1 71 314-384 398-477 (663)
383 3l6v_A GYRA, DNA gyrase subuni 34.6 2.2E+02 0.0074 24.3 24.0 122 66-200 46-180 (370)
384 3al9_A Plexin-A2; beta-propell 29.8 1.6E+02 0.0055 26.8 7.5 73 120-195 401-476 (539)
385 3ol2_B Plexin-B1; beta-propell 29.7 1.7E+02 0.0059 26.5 7.6 71 314-384 388-461 (528)
386 1suu_A DNA gyrase subunit A; t 25.5 2.8E+02 0.0097 22.8 26.0 168 66-250 47-230 (312)
387 3oky_B Putative uncharacterize 25.3 4E+02 0.014 24.4 9.3 82 303-384 393-495 (565)
388 3q6k_A 43.2 kDa salivary prote 25.1 3.3E+02 0.011 23.4 20.6 183 142-331 124-341 (381)
389 3nvq_A Semaphorin-7A; beta-pro 24.5 1.8E+02 0.0063 26.7 6.8 59 326-384 381-444 (590)
390 3al9_A Plexin-A2; beta-propell 23.8 2E+02 0.0067 26.2 7.0 75 169-246 401-476 (539)
391 4gz8_A Semaphorin-3A; multi-do 22.6 2.3E+02 0.008 26.5 7.3 58 326-383 430-494 (667)
392 3kci_A Probable E3 ubiquitin-p 21.6 3.8E+02 0.013 22.8 26.9 251 120-389 54-345 (389)
393 1q47_A Semaphorin 3A; beta pro 20.9 2.1E+02 0.0073 25.6 6.5 74 120-195 405-487 (495)
No 1
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-48 Score=343.48 Aligned_cols=302 Identities=14% Similarity=0.147 Sum_probs=237.5
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---ceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---PEFEFFCQSPVLSCCFAKFNPYLILGGTY 139 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 139 (401)
.|.+.|.+++|+|||++|++++.... .--|+.|++|+..++... ......|...|++++|+|++ . +++++.
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~----~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~-~l~~s~ 113 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSS----RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-G-ILVASD 113 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSS----SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-E-EEEEET
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCC----ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-C-EEEEEC
Confidence 47789999999999999999982110 001789999998765432 23445678899999999976 4 445678
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
||+|+|||+.+++...... ....+|...|++++| +|++.+|++++.|+.|++||+++. ..... +.+|.
T Consensus 114 dg~v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~---~~~~~-----~~~h~ 181 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNK--FAKYEHDDIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQK---AVLKS-----YNAHS 181 (357)
T ss_dssp TSCEEEC--------CCCC--EEECCCSSCEEEEEE--CSSSSEEEEEETTSCEEEEETTTT---EEEEE-----ECCCS
T ss_pred CCEEEEeeccccceeEEEe--eccCCCCCCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCC---cEEEE-----EcCCC
Confidence 9999999998876543222 234589999999999 999999999999999999999752 22222 34588
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
..|++++|+|.....+++++.|+.|++||++..+......+..|...+.+++|+|+. +.+|++|+.|+.|++||+
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK-----DDTFACGDETGNVSLVNI 256 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS-----TTEEEEEESSSCEEEEES
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc-----cceEEEeecccceeEEEC
Confidence 899999999544568999999999999999865443334455678889999999985 679999999999999999
Q ss_pred eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEEEEec
Q psy17342 300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLCVGDE 378 (401)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 378 (401)
++++++.++..|...|++++|+|++..+|++++.|++|+|||+++++.+. ..+|...|++++|+| ++.+|++++.
T Consensus 257 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~----~~~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR----DLSHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----ECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----ECCCCCCEEEEEEeCCCCCEEEEEcC
Confidence 99999999999999999999999986689999999999999998865432 247889999999998 7999999999
Q ss_pred CCcEEEEEeccCc
Q psy17342 379 KGAITMFDVGEVG 391 (401)
Q Consensus 379 dg~v~iw~~~~~~ 391 (401)
||+|++|++.+.+
T Consensus 333 Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 DHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEECC---
T ss_pred CCeEEEEECCCCC
Confidence 9999999997754
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.6e-48 Score=337.46 Aligned_cols=292 Identities=16% Similarity=0.129 Sum_probs=233.1
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-------C---CCCCceEEEecCCCeeEEEEeCCCCce
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-------F---KKTTPEFEFFCQSPVLSCCFAKFNPYL 133 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~ 133 (401)
+.+.|.+++|+|||++|++++ |+++++||.. . ..........+...|.+++|+|++ .
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-----------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~ 95 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-----------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--G 95 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-----------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--E
T ss_pred ccCCEEEEEECCCCCEEEEEe-----------CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--e
Confidence 457799999999999888777 5566666521 1 112223445567899999999964 6
Q ss_pred EEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN 213 (401)
Q Consensus 134 l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 213 (401)
|++|+.||+|+|||+.+++...... ....+|.+.|++++| +|++.+|++++.|++|++||+++. .....
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~---~~~~~---- 164 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSK--FCKYEHDDIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQ---VVLSS---- 164 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEE--EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTT---EEEEE----
T ss_pred EEEEECCCEEEEEeccCCCceeEee--ccccCCCCCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCC---cEEEE----
Confidence 7788999999999999887654332 234689999999999 999999999999999999999752 12222
Q ss_pred cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee--cCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY--EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
+.+|...|++++|+|.+..+|++++.|+.|++||++..+ ....+ ..|...+.+++|+|.. +.+|++|+.|
T Consensus 165 -~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~sg~~d 236 (344)
T 4gqb_B 165 -YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQ-----SEVFVFGDEN 236 (344)
T ss_dssp -ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSC-----TTEEEEEETT
T ss_pred -EcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeecceeeccceeeeecCCC-----CcceEEeccC
Confidence 445899999999995445678999999999999998544 44444 3466679999999975 6899999999
Q ss_pred CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342 292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT 371 (401)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 371 (401)
+.|++||+++++++.++.+|...|++++|+|++..+|++++.|++|+|||+++++.. ...+|...|++++|+|+++
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----EECCCSSCEEEEEECSSST
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999998668999999999999999876532 2357889999999999986
Q ss_pred -EEEEEecCCcEEEEEeccCc
Q psy17342 372 -QLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 372 -~l~~~~~dg~v~iw~~~~~~ 391 (401)
+|++++.||+|++|++.+..
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 56789999999999998753
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-48 Score=344.83 Aligned_cols=291 Identities=13% Similarity=0.149 Sum_probs=250.9
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
+|..+|++++|+|+++.|++++ .|++|+|||+.+++....+ ..|...|.+++|+|++ .+|++|+.|++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s----------~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~~-~~l~sgs~D~~ 173 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSAS----------EDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSG-KLLASCSADMT 173 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE----------SSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred ccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCCC-CEEEEEeCCCe
Confidence 5889999999999999999999 7999999999987766443 3578999999999977 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||+.+.+.. ..+.+|...|.+++| +|++.+|++++.|++|++||++... . ... +.+|...|
T Consensus 174 i~iwd~~~~~~~------~~~~~h~~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~-~--~~~-----~~~h~~~v 237 (410)
T 1vyh_C 174 IKLWDFQGFECI------RTMHGHDHNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGY-C--VKT-----FTGHREWV 237 (410)
T ss_dssp CCEEETTSSCEE------ECCCCCSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCC-E--EEE-----EECCSSCE
T ss_pred EEEEeCCCCcee------EEEcCCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCc-E--EEE-----EeCCCccE
Confidence 999999876543 235789999999999 8999999999999999999997632 1 112 34588899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC--------------CCCCcEEEEE
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH--------------IDFSHLYLTS 288 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--------------~~~~~~l~s~ 288 (401)
.++.++ +++.++++|+.|+.|++||+... .....+.+|...|.+++|+|.... ...+.+|++|
T Consensus 238 ~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 238 RMVRPN-QDGTLIASCSNDQTVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEC-TTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEC-CCCCEEEEEcCCCeEEEEECCCC--ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 999999 89999999999999999999743 467788899999999999986210 0004689999
Q ss_pred eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342 289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP 368 (401)
Q Consensus 289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 368 (401)
+.|+.|++||+++++++..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+ ..|...|++++|+|
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHK 390 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEE---ECCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEE---cCCCCcEEEEEEcC
Confidence 9999999999999999999999999999999999997 7899999999999999887766554 46788999999999
Q ss_pred CCcEEEEEecCCcEEEEEec
Q psy17342 369 NGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 369 ~g~~l~~~~~dg~v~iw~~~ 388 (401)
++.+|++|+.||.|++|+++
T Consensus 391 ~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSCEEEEETTSEEEEEC--
T ss_pred CCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999864
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.8e-48 Score=333.31 Aligned_cols=292 Identities=18% Similarity=0.299 Sum_probs=248.3
Q ss_pred eeccccccccceEEEEecCC----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCC
Q psy17342 57 FFDEKWSKNRNVTYMDWSTQ----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNP 131 (401)
Q Consensus 57 ~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 131 (401)
.+.....|.+.|.+++|+|+ +..|++|+ .|++|+||++..++...... .+|...|.+++|+|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs----------~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~- 92 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGS----------LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL- 92 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEc----------CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-
Confidence 33444579999999999985 55799999 79999999998654333332 3478899999999977
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 211 (401)
.++++|+.|+.|++||+.+++.. ..+..|...+.+++| +|++.+|++++.||.|++|+++... ....+
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~------~~~~~~~~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~- 160 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQI------KSIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGK---KEYSL- 160 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEE------EEEECCTTCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCS---EEEEE-
T ss_pred CEEEEEeCCCcEEEEECCCCCEE------EEEeCCCccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCc---eeEEe-
Confidence 79999999999999999887643 224578888999999 9999999999999999999997532 22222
Q ss_pred cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
..+...|.+++|+ |++++|++|+.|+.|++||++. .+.+..+.+|..+|.+++|+|+ +++|++++.|
T Consensus 161 ----~~~~~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~spd------~~~l~s~s~d 227 (321)
T 3ow8_A 161 ----DTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIAT--GKLLHTLEGHAMPIRSLTFSPD------SQLLVTASDD 227 (321)
T ss_dssp ----ECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCCCEEEECTT------SCEEEEECTT
T ss_pred ----cCCCceEEEEEEC-CCCCEEEEEcCCCeEEEEECCC--CcEEEEEcccCCceeEEEEcCC------CCEEEEEcCC
Confidence 2366789999999 8999999999999999999974 4467889999999999999998 7999999999
Q ss_pred CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342 292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT 371 (401)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 371 (401)
+.|++||+++++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+ ..|...|++++|+|+|+
T Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTF---FDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSS
T ss_pred CeEEEEECCCcceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEE---cCCCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999997 8999999999999999987654443 46788999999999999
Q ss_pred EEEEEecCCcEEEEEec
Q psy17342 372 QLCVGDEKGAITMFDVG 388 (401)
Q Consensus 372 ~l~~~~~dg~v~iw~~~ 388 (401)
+|++++.||.|++||+.
T Consensus 304 ~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 304 KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCeEEEEeCC
Confidence 99999999999999963
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7e-47 Score=331.46 Aligned_cols=299 Identities=14% Similarity=0.208 Sum_probs=242.2
Q ss_pred cccc-ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE--EecCCCeeEEEEeCCCCceEEEEec
Q psy17342 63 SKNR-NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE--FFCQSPVLSCCFAKFNPYLILGGTY 139 (401)
Q Consensus 63 ~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~ 139 (401)
.|.. .|.+++|+|+|++|++++ .|++|+|||+.++....... ..|...|.+++|+|++ .+|++|+.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~----------~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~ 81 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCG----------GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASF 81 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEE----------TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEET
T ss_pred CCCCCcEEEEEECCCCCEEEEEc----------CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEEC
Confidence 3545 899999999999999999 79999999998664332222 3478899999999977 79999999
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
|+.+++|++........ ..+.+|...|.+++| +|++.+|++++.|++|++||++.......... ..+|.
T Consensus 82 D~~v~iw~~~~~~~~~~----~~~~~h~~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~~h~ 150 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECV----TTLEGHENEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYECVSV-----LNSHT 150 (345)
T ss_dssp TSCEEEEEECCC-EEEE----EEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-----ECCCC
T ss_pred CCcEEEEEccCCCeEEE----EEccCCCCCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-----ecCcC
Confidence 99999999877643221 235789999999999 99999999999999999999975332221212 34588
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
..|.+++|+ |++.+|++|+.|+.|++|+.+.....+...+.+|...|.+++|+|+ +++|++++.|++|++||.
T Consensus 151 ~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~------g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 151 QDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS------GQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SCEEEEEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEE
T ss_pred CCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC------CCEEEEEeCCCeEEEecc
Confidence 899999999 7999999999999999999875543455678899999999999998 799999999999999997
Q ss_pred eCC---------------CceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC--cceE----EeecC
Q psy17342 300 KEN---------------KPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV--PATS----AIVEG 357 (401)
Q Consensus 300 ~~~---------------~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~----~~~~~ 357 (401)
... +++..+.+ |...|.+++|+|++. .|++++.|+.|++|+....... +.+. ...+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 542 12334444 788999999999997 7899999999999998765322 1211 12357
Q ss_pred CCCeEEEEecCCC-cEEEEEecCCcEEEEEeccCc
Q psy17342 358 APALSRVTWTPNG-TQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 358 ~~~v~~~~~s~~g-~~l~~~~~dg~v~iw~~~~~~ 391 (401)
...|++++|+|++ .+||+|+.||.|++|++.+++
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 7899999999998 599999999999999999874
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-46 Score=323.56 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=242.1
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|.+.|.+++|+|++++|++++ .|+.|++||++++.....+ ..|..+|.+++|+|++ ++|++|+.|+.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~----------~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 78 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTL----------YSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARK-NWIIVGSDDFR 78 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred CCCCceEEEEECCCCCEEEEEc----------CCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCC-CEEEEECCCCE
Confidence 3668999999999999999999 7999999999977655433 3468899999999977 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||+.+++.. ..+.+|...|.+++| +|++.+|++++.|++|++||++....... . +.+|...|
T Consensus 79 i~vwd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~-----~~~h~~~v 143 (304)
T 2ynn_A 79 IRVFNYNTGEKV------VDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ--T-----FEGHEHFV 143 (304)
T ss_dssp EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEEGGGTTEEEE--E-----ECCCCSCE
T ss_pred EEEEECCCCcEE------EEEeCCCCcEEEEEE--cCCCCEEEEECCCCeEEEEECCCCcchhh--h-----hcccCCcE
Confidence 999999987653 335789999999999 99999999999999999999975221111 1 34588999
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 302 (401)
.+++|+|.++..|++|+.|+.|++||++.... ......+|...+..+.++|... +.+|++++.|++|++||++++
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPD----KPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTT----CCEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCC----CCEEEEEcCCCeEEEEeCCCC
Confidence 99999965789999999999999999975432 2233346778899999987421 579999999999999999999
Q ss_pred CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc--EEEEEecCC
Q psy17342 303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT--QLCVGDEKG 380 (401)
Q Consensus 303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg 380 (401)
+++.++.+|...|.+++|+|+++ +|++++.||.|++||+.+++....+ ..+...+++++|+|++. ++++|+.||
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL---NVGLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEE---CCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeec---cCCCccEEEEEECCCCCceEEEEecCCc
Confidence 99999999999999999999997 8999999999999999987755443 35667899999999875 577777666
Q ss_pred cEEEEEeccC
Q psy17342 381 AITMFDVGEV 390 (401)
Q Consensus 381 ~v~iw~~~~~ 390 (401)
+.+|++.+.
T Consensus 295 -~~~~~~~~~ 303 (304)
T 2ynn_A 295 -FTVLSLGND 303 (304)
T ss_dssp -EEEEECC--
T ss_pred -eEEEEeccC
Confidence 788888653
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-46 Score=325.23 Aligned_cols=286 Identities=16% Similarity=0.258 Sum_probs=242.9
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
+|.+.|.+++|+|++++|++++ .|++|++||..+++....+ ..|...|.+++|+|++ .+|++|+.|+.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~~-~~l~s~~~d~~ 120 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSAS----------QDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSG-NYVACGGLDNI 120 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTTS-SEEEEEETTCE
T ss_pred CCCCceEEEEECCCCCEEEEEe----------CCCcEEEEECCCCCcceEe-ecCCccEEEEEECCCC-CEEEEEeCCCe
Confidence 5779999999999999999999 8999999999877655443 3468899999999977 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++|++.+....... ...+.+|.+.|.++.| ++++. +++++.|++|++||+++.. .... +.+|...|
T Consensus 121 v~iw~~~~~~~~~~~--~~~~~~h~~~v~~~~~--~~~~~-l~s~s~d~~i~~wd~~~~~---~~~~-----~~~h~~~v 187 (340)
T 1got_B 121 CSIYNLKTREGNVRV--SRELAGHTGYLSCCRF--LDDNQ-IVTSSGDTTCALWDIETGQ---QTTT-----FTGHTGDV 187 (340)
T ss_dssp EEEEETTTCSBSCEE--EEEEECCSSCEEEEEE--EETTE-EEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCE
T ss_pred EEEEECccCCCccee--EEEecCCCccEEEEEE--CCCCc-EEEEECCCcEEEEECCCCc---EEEE-----EcCCCCce
Confidence 999999876432211 1235689999999999 66664 8999999999999997522 1222 34588899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 302 (401)
.+++|+ |++.++++|+.|+.|++||++. ......+.+|...|++++|+|+ +++|++|+.|++|++||++++
T Consensus 188 ~~~~~~-~~~~~l~sg~~d~~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 188 MSLSLA-PDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEEEEC-TTSSEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT
T ss_pred EEEEEC-CCCCEEEEEeCCCcEEEEECCC--CeeEEEEcCCcCCEEEEEEcCC------CCEEEEEcCCCcEEEEECCCC
Confidence 999999 7999999999999999999984 4467889999999999999998 799999999999999999988
Q ss_pred CceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342 303 KPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380 (401)
Q Consensus 303 ~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 380 (401)
+.+..+.. +...|.+++|+|+++ +|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+|++|++|+.||
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEe---ecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 87777653 234799999999997 8999999999999999887654443 47889999999999999999999999
Q ss_pred cEEEEE
Q psy17342 381 AITMFD 386 (401)
Q Consensus 381 ~v~iw~ 386 (401)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.8e-46 Score=325.72 Aligned_cols=290 Identities=18% Similarity=0.301 Sum_probs=243.9
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
+|...|.+++|+|++++|++++ .|++|+|||..+++....+. .+...|.+++|+|++ .++++|+.|+.
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s----------~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g-~~lasg~~d~~ 129 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSS----------QDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSG-CAIACGGLDNK 129 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTS-SEEEEESTTSE
T ss_pred CCCCeEEEEEECCCCCEEEEEe----------CCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCC-CEEEEeeCCCC
Confidence 5889999999999999999999 89999999998766554433 357789999999987 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
+++|++..............+..|...|.+++| ++++..|++++.|++|++||++... . ... +.+|...|
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~-~--~~~-----~~~h~~~v 199 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSDMQILTASGDGTCALWDVESGQ-L--LQS-----FHGHGADV 199 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCC-E--EEE-----EECCSSCE
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCe-E--EEE-----EcCCCCCe
Confidence 999998764322211222335689999999999 8999999999999999999997622 1 112 34588899
Q ss_pred EEEEeccC-CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 223 LSLAFPQN-DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 223 ~~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
.+++++|. +++.|++|+.|+.|++||++. ..++..+.+|...|++++|+|+ +.+|++++.|++|++||++.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTT
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCC
Confidence 99999843 468999999999999999984 4467889999999999999998 79999999999999999998
Q ss_pred CCceEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342 302 NKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379 (401)
Q Consensus 302 ~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 379 (401)
++.+..+..+ ...+.+++|+|++. ++++++.|+.|++||+.+++.+.. ..+|...|++++|+|+|++|++|+.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~---l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 272 DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSI---LFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEE---ECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEE---EECCCCcEEEEEECCCCCEEEEEcCC
Confidence 8777766543 34789999999997 899999999999999988765433 34788999999999999999999999
Q ss_pred CcEEEEE
Q psy17342 380 GAITMFD 386 (401)
Q Consensus 380 g~v~iw~ 386 (401)
|.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-46 Score=354.92 Aligned_cols=328 Identities=17% Similarity=0.232 Sum_probs=254.3
Q ss_pred cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342 9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN 88 (401)
Q Consensus 9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 88 (401)
.+++|+.|+++++||....+ ....+ ..|...|.+++|+|++++|++++
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~------------------------~~~~l----~~H~~~V~~v~fspdg~~las~s---- 209 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFK------------------------FKSTF----GEHTKFVHSVRYNPDGSLFASTG---- 209 (611)
T ss_dssp EEEEEETTSCEEEEETTTBE------------------------EEEEE----CCCSSCEEEEEECTTSSEEEEEE----
T ss_pred EEEEEeCCCeEEEEECCCCe------------------------Eeeee----ccccCceEEEEECCCCCEEEEEE----
Confidence 59999999999999853221 00111 14778999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCcCCCCCceEEE------ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceee----
Q psy17342 89 KEAPNEPDGVCLIWNTKFKKTTPEFEF------FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHR---- 158 (401)
Q Consensus 89 ~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~---- 158 (401)
.|++|++||+.+++....+.. .|.+.|.+++|+|++ .+|++|+.|++|++||+.+++......
T Consensus 210 ------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 210 ------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp ------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 899999999987765443322 578999999999987 789999999999999998764322111
Q ss_pred ---------------------------------ccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342 159 ---------------------------------TPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ 205 (401)
Q Consensus 159 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 205 (401)
....+.+|...|.+++| +|++.+|++++.|++|++||+.......
T Consensus 283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~--spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS--SADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 00123589999999999 9999999999999999999987522100
Q ss_pred cc--------c-------------------------------------ccc---------cc------------------
Q psy17342 206 ET--------R-------------------------------------DLQ---------YN------------------ 213 (401)
Q Consensus 206 ~~--------~-------------------------------------~~~---------~~------------------ 213 (401)
.. . .+. ..
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 00 0 000 00
Q ss_pred --cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 214 --NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 214 --~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
....+...+.+++|+ |++++|++|+.|+.|++|++.......... .+|...|++++|+|+ +++|++++.|
T Consensus 441 ~~~~~~~~~~v~~va~s-pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd------g~~las~s~d 512 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN------GAFLVATDQS 512 (611)
T ss_dssp EEEEEECSSCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT------SSEEEEEETT
T ss_pred ceeeeecCCCceEEEEe-CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC------CCEEEEEcCC
Confidence 000123457899999 899999999999999999987543222333 679999999999999 7999999999
Q ss_pred CeEEEEEeeC-CCceEE--EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEec
Q psy17342 292 WSVKLWNIKE-NKPVHS--FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWT 367 (401)
Q Consensus 292 ~~i~iwd~~~-~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s 367 (401)
++|++||+.+ ++.+.. +..|...|.+++|+|+++ +|++++.|++|++||+.++.... .....+| ...|++++|+
T Consensus 513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~~~~~-~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEEE
T ss_pred CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC-EEEEEECCCcEEEEECCCccccc-chhhccCcccCeeEEEEc
Confidence 9999999987 555443 344999999999999997 89999999999999998765332 1223456 6889999999
Q ss_pred CCCcEEEEEecCCcEEEEEec
Q psy17342 368 PNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 368 ~~g~~l~~~~~dg~v~iw~~~ 388 (401)
|+++ |++++.|++|++|++.
T Consensus 591 ~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 591 NETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTE-EEEEETTSCEEEEECC
T ss_pred CCCE-EEEecCCCCEEEEecc
Confidence 9998 9999999999999973
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-46 Score=334.67 Aligned_cols=303 Identities=18% Similarity=0.252 Sum_probs=248.0
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
+|.+.|++++|+|++++|++++ .|++|+|||+.+++....+ ..|...|.+++|+|++ .+|++|+.|+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~g-~~las~~~d~~ 131 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSAS----------QDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPNG-QSVACGGLDSA 131 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEE----------TTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTTS-SEEEECCSSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCccceEE-ecCCCCEEEEEECCCC-CEEEEeeCCCc
Confidence 5889999999999999999999 8999999999877655444 3468899999999987 79999999999
Q ss_pred EEEEECCCCCCCc-eeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 143 IVLWDTRVQKKTP-VHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 143 v~iw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
+++|++....... .......+.+|.+.|.++.| .|+ +..|++++.|++|++||++... ....+.... ..+|..
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~--~~~h~~ 206 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEF--PSGHTA 206 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCS--SSSCCS
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeeccc--CCCCcc
Confidence 9999997643211 00111235789999999998 665 4579999999999999998632 222111111 245888
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 300 (401)
.|.+++|+|.+++++++|+.|+.|++||++... ..+..+.+|.+.|++++|+|+ +.+|++|+.|++|++||++
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTT------SSEEEEECSSSCEEEEETT
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecC------CCeEEEEcCCCeEEEEECC
Confidence 999999997789999999999999999997432 357788999999999999998 7999999999999999999
Q ss_pred CCCceEEEeecC-------CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE-eecCCCCeEEEEecCCCcE
Q psy17342 301 ENKPVHSFNEFR-------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA-IVEGAPALSRVTWTPNGTQ 372 (401)
Q Consensus 301 ~~~~~~~~~~~~-------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~ 372 (401)
+++++..+..+. ..|.+++|+|+++ ++++|+.||.|++||+..++....+.. ...|...|++++|+|+|++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 998888776543 2489999999997 899999999999999987765433311 1357889999999999999
Q ss_pred EEEEecCCcEEEEEeccC
Q psy17342 373 LCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 373 l~~~~~dg~v~iw~~~~~ 390 (401)
|++|+.||.|++|++...
T Consensus 359 l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECTTSCEEEEECCSS
T ss_pred EEEeeCCCCEEEEecCCC
Confidence 999999999999999875
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-45 Score=319.82 Aligned_cols=301 Identities=15% Similarity=0.192 Sum_probs=227.2
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--e-cCCCeeEEEEeCCCCceEEEEec
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--F-CQSPVLSCCFAKFNPYLILGGTY 139 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~g~~ 139 (401)
.|.++|.+++|+|+ +|++++ .|++|++||+.++.......+ . |...|.+++|+|++ .+|++|+.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~----------~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~ 78 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGS----------TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSF 78 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEE----------SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEET
T ss_pred cCCCceeeeccCCC--EEEEEc----------CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeC
Confidence 57799999999998 888888 799999999986533222222 3 78899999999977 79999999
Q ss_pred CCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 140 SGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 140 dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
|+.|++|++...... ........+.+|...|.+++| +|++.+|++++.|++|++||++......... .. +.+|
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~~~~~--~~--~~~h 152 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEYECI--SV--LQEH 152 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCCCEEE--EE--ECCC
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCCeEEE--EE--eccC
Confidence 999999999643211 000111235789999999999 9999999999999999999995422211111 11 3458
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
...|.+++|+ |++.+|++|+.|+.|++|+.......++..+.+|.+.|.+++|+|+.. +.+|++++.|++|++||
T Consensus 153 ~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 153 SQDVKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG----VFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp SSCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS----SCEEEEEETTSCEEEEE
T ss_pred CCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC----eeEEEEEeCCCeEEEEE
Confidence 8899999999 789999999999999999987543346778899999999999999731 36899999999999999
Q ss_pred eeCC--------CceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCC-CeEEEEecC
Q psy17342 299 IKEN--------KPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP-ALSRVTWTP 368 (401)
Q Consensus 299 ~~~~--------~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~s~ 368 (401)
++.+ .+...+.. |...|.+++|++++ +|++++.||.|++||..++...........|.. .|.+++|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred ecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 9765 23344444 88999999999775 689999999999999876532112222234555 899999999
Q ss_pred --CCcEEEEEecCCcEEEEEecc
Q psy17342 369 --NGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 369 --~g~~l~~~~~dg~v~iw~~~~ 389 (401)
++++|++|+.||.|++|++++
T Consensus 306 ~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----CCEEEEETTSEEEEEEC--
T ss_pred CCCceEEEEecCCCcEEEEEecc
Confidence 789999999999999999875
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-44 Score=313.96 Aligned_cols=290 Identities=17% Similarity=0.258 Sum_probs=235.0
Q ss_pred ccccceEEEEe-----cC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-----c-eEEEecCCCeeEEEEeCCC
Q psy17342 63 SKNRNVTYMDW-----ST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-----P-EFEFFCQSPVLSCCFAKFN 130 (401)
Q Consensus 63 ~~~~~v~~~~~-----~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~ 130 (401)
+|.+.|++++| +| ++++|++++ .|++|++||+.+.+.. + .....|...|.+++|+|++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs----------~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGS----------RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEE----------TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEc----------CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 58899999999 76 899999999 7999999999754321 1 1223578899999999977
Q ss_pred CceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342 131 PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL 210 (401)
Q Consensus 131 ~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 210 (401)
.++++|+.|++|++||+++++.. ..+.+|...|.+++| +|++.+|++++.|++|++||+.. ... ...
T Consensus 89 -~~l~s~s~D~~v~lwd~~~~~~~------~~~~~h~~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~--~~~--~~~ 155 (343)
T 2xzm_R 89 -CFAISSSWDKTLRLWDLRTGTTY------KRFVGHQSEVYSVAF--SPDNRQILSAGAEREIKLWNILG--ECK--FSS 155 (343)
T ss_dssp -TEEEEEETTSEEEEEETTSSCEE------EEEECCCSCEEEEEE--CSSTTEEEEEETTSCEEEEESSS--CEE--EEC
T ss_pred -CEEEEEcCCCcEEEEECCCCcEE------EEEcCCCCcEEEEEE--CCCCCEEEEEcCCCEEEEEeccC--Cce--eee
Confidence 78999999999999999887643 235789999999999 99999999999999999999863 111 111
Q ss_pred ccccccCCccceEEEEeccCCC----------CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342 211 QYNNKQTKNLAVLSLAFPQNDV----------NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280 (401)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~----------~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 280 (401)
.. ...|...|.+++|+ +++ .++++++.|+.|++||.. ......+.+|...|.+++|+|+
T Consensus 156 ~~--~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~h~~~v~~~~~s~~----- 224 (343)
T 2xzm_R 156 AE--KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQIRYTFKAHESNVNHLSISPN----- 224 (343)
T ss_dssp CT--TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEEEEEEECCSSCEEEEEECTT-----
T ss_pred ec--ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCC---CceeEEEcCccccceEEEECCC-----
Confidence 11 23478899999999 554 689999999999999953 2356678899999999999998
Q ss_pred CCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----
Q psy17342 281 FSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI----- 354 (401)
Q Consensus 281 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----- 354 (401)
+++|++|+.|+.|++||+.. ..+...+. +...|.+++|+|++. +++ ++.|+.|++||+.+.+........
T Consensus 225 -g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~ 300 (343)
T 2xzm_R 225 -GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300 (343)
T ss_dssp -SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred -CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCceEEeecCcch
Confidence 79999999999999999954 44444443 466799999999986 565 456888999999887665422221
Q ss_pred -----ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 355 -----VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 355 -----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.+|...|++++|+|+|++|++|+.||.|++|+++++
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 145678999999999999999999999999999876
No 13
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-46 Score=335.48 Aligned_cols=343 Identities=15% Similarity=0.225 Sum_probs=265.4
Q ss_pred chhhhhc-ccccc----------ccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEE
Q psy17342 2 DWAEAGE-SQISG----------TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTY 70 (401)
Q Consensus 2 ~~~~~~~-~~~~g----------~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 70 (401)
.|...+. .+++| +.||.+++|+.........+ ..+.|...|.+
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------------------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------------------------ASLQVDSKFND 72 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------------------------CCCCCSSCEEE
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------------------------EEEecCCceEE
Confidence 4555554 78888 88999999998765411000 11235578999
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~ 147 (401)
++|+|++++|++++ .|+.|++||+.+. .........|...|.+++|+|++..+|++|+.||.|++||
T Consensus 73 ~~~s~~~~~l~~~~----------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 73 LDWSHNNKIIAGAL----------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EEECSSSSCEEEEE----------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EEECCCCCeEEEEc----------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999 7999999999862 2122223347889999999998568999999999999999
Q ss_pred CCCCCCCc---eeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342 148 TRVQKKTP---VHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 148 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
+.+..... ..........|...|.+++| +++ +.+|++++.||.|++||++... ....+.... ...+|...|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~~~~~~~v~ 218 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTS-PNSGIKQQLS 218 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCC-CSSCCCCCEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccc-cccccCCceE
Confidence 98876211 00011123679999999999 888 7899999999999999998622 211111110 0112378899
Q ss_pred EEEeccCCCCeEEEEcCCc---eEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 224 SLAFPQNDVNNFVVGCEDG---NVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
+++|+|....++++++.++ .|++||++... .++..+. +|...|.+++|+|.. +.+|++++.|+.|++||+
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-----~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQD-----EHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSC-----SSCEEEEESSSEEEEECS
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCC-----CCeEEEEeCCCCEEEeeC
Confidence 9999943347899999998 99999998532 3566777 899999999999932 799999999999999999
Q ss_pred eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE--------------------------
Q psy17342 300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA-------------------------- 353 (401)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------- 353 (401)
++++++..+..|...|.+++|+|+++.+|++++.|+.|++||+.+.........
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 999999999999999999999999955899999999999999987664432210
Q ss_pred ------eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 354 ------IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 354 ------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
...+..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0014567789999999999999999999999999875
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-44 Score=312.72 Aligned_cols=289 Identities=19% Similarity=0.252 Sum_probs=237.0
Q ss_pred ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---c-eEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342 63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---P-EFEFFCQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~~l~~g 137 (401)
+|.+.|.+++|+|++ ++|++++ .|++|++|++...... + .....|...|.+++|+|++ .+|++|
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s----------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~ 83 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSAS----------RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSA 83 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEE----------TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred cccceEEEEEccCCCccEEEEec----------CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEE
Confidence 588999999999976 6788888 8999999998753221 1 1223578999999999977 799999
Q ss_pred ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
+.|++|++||+.+++.. ..+.+|...|.+++| ++++.+|++++.|++|++||++. . .... ..+
T Consensus 84 s~D~~v~~wd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~--~--~~~~-----~~~ 146 (319)
T 3frx_A 84 SWDKTLRLWDVATGETY------QRFVGHKSDVMSVDI--DKKASMIISGSRDKTIKVWTIKG--Q--CLAT-----LLG 146 (319)
T ss_dssp ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSCEEEEEETTSCEEEEETTS--C--EEEE-----ECC
T ss_pred eCCCEEEEEECCCCCee------EEEccCCCcEEEEEE--cCCCCEEEEEeCCCeEEEEECCC--C--eEEE-----Eec
Confidence 99999999999887643 235789999999999 99999999999999999999863 1 1111 345
Q ss_pred CccceEEEEeccC-----CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342 218 KNLAVLSLAFPQN-----DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 218 ~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~ 292 (401)
|...|.++.+.|. ++..+++++.|+.|++||++. ......+.+|..+|.+++|+|+ +.+|++++.|+
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~sp~------g~~l~s~~~dg 218 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPD------GTLIASAGKDG 218 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--TEEEEEECCCCSCEEEEEECTT------SSEEEEEETTC
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--chhheeecCCCCcEEEEEEcCC------CCEEEEEeCCC
Confidence 8889999999942 345899999999999999974 3456778899999999999998 79999999999
Q ss_pred eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----ecCCCCeEEEEec
Q psy17342 293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-----VEGAPALSRVTWT 367 (401)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~s 367 (401)
.|++||+++++++..+.. ...|.+++|+|++. ++++++ ++.+++|++........+... ..+...+.+++|+
T Consensus 219 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 295 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295 (319)
T ss_dssp EEEEEETTTTEEEEEEEC-CSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred eEEEEECCCCcEEEEecC-CCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence 999999999999988886 46899999999997 677665 556999999865433222111 1235678999999
Q ss_pred CCCcEEEEEecCCcEEEEEeccC
Q psy17342 368 PNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 368 ~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
|||++|++|+.||.|++||+.++
T Consensus 296 pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 296 ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCEEEEeecCceEEEEEEeec
Confidence 99999999999999999999875
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-44 Score=320.99 Aligned_cols=287 Identities=16% Similarity=0.214 Sum_probs=236.2
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----------------cCCCeeEEE
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----------------CQSPVLSCC 125 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~ 125 (401)
.|...|.+++|+|+|++|++++ ++.+++|++.+++....+..+ +...|.+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-----------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-----------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 5889999999999999888876 789999999877654333211 112489999
Q ss_pred EeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342 126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ 205 (401)
Q Consensus 126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 205 (401)
|+|++ .+|++|+.|+.|++||+.+++.. ..+.+|...|.+++| +|++.+|++++.|++|++||++... .
T Consensus 131 ~s~dg-~~l~s~~~d~~i~iwd~~~~~~~------~~~~~h~~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~-~- 199 (393)
T 1erj_A 131 FSPDG-KFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQ-C- 199 (393)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE-E-
T ss_pred ECCCC-CEEEEEcCCCeEEEEECCCCcEE------EEEccCCCCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCe-e-
Confidence 99987 78999999999999999876543 235789999999999 8999999999999999999997522 1
Q ss_pred cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-------cCCCCceeeeecCccCCC
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-------EGHEGPVVGLSSHRAQGH 278 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~ 278 (401)
...+ .+...+.+++|+|.++.++++|+.|+.|++||.+... .+..+ .+|...|.+++|+|+
T Consensus 200 -~~~~------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~--- 267 (393)
T 1erj_A 200 -SLTL------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRD--- 267 (393)
T ss_dssp -EEEE------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTT---
T ss_pred -EEEE------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCC---
Confidence 1111 1445799999996699999999999999999987432 34444 579999999999998
Q ss_pred CCCCcEEEEEeCCCeEEEEEeeCC------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 279 IDFSHLYLTSSYDWSVKLWNIKEN------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 279 ~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
+.+|++++.|+.|++||+++. .+...+.+|...|.+++|+|++. +|++++.|+.|++||+.+++
T Consensus 268 ---g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 268 ---GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp ---SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC
T ss_pred ---CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe
Confidence 799999999999999999753 34567788999999999999997 89999999999999999887
Q ss_pred CCcceEEeecCCCCeEEEEecC------CCcEEEEEecCCcEEEEEeccC
Q psy17342 347 EVPATSAIVEGAPALSRVTWTP------NGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 347 ~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.+..+ .+|...|.+++|++ ++++|++|+.||.|++|++...
T Consensus 344 ~~~~l---~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 344 PLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEE---ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEE---CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 54443 47888999999886 6899999999999999999764
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-44 Score=336.54 Aligned_cols=308 Identities=19% Similarity=0.285 Sum_probs=256.5
Q ss_pred hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342 3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 82 (401)
Q Consensus 3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 82 (401)
|..-+..+++++.|+.+++|+..... . .. ...|...|.+++|+|+++.|++
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~~~~~--------~-----------------~~----~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNRNGQL--------L-----------------QT----LTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCE--------E-----------------EE----ECCCSSCEEEEEECTTSSEEEE
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCcE--------E-----------------EE----EecCCCCeEEEEECCCCCEEEE
Confidence 33456789999999999999853221 0 00 1146688999999999999999
Q ss_pred EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
++ .|+.|++||..... .. ....|...|.+++|+|++ .+|++|+.||.|++|+..... . ..
T Consensus 321 ~~----------~d~~i~~w~~~~~~-~~-~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~-~------~~ 380 (577)
T 2ymu_A 321 AS----------DDKTVKLWNRNGQH-LQ-TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQL-L------QT 380 (577)
T ss_dssp EE----------TTSCEEEEETTSCE-EE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCE-E------EE
T ss_pred Ee----------CCCeEEEEeCCCCe-eE-EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCE-E------EE
Confidence 99 79999999987432 22 234578899999999987 789999999999999964322 1 23
Q ss_pred ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG 242 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 242 (401)
+..|...|.+++| +|++.+|++++.|+.|++||... +. ... ..+|...|++++|+ |++++|++++.|+
T Consensus 381 ~~~~~~~v~~~~~--s~dg~~l~~~~~d~~v~~~~~~~--~~--~~~-----~~~~~~~v~~~~~s-~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 381 LTGHSSSVRGVAF--SPDGQTIASASDDKTVKLWNRNG--QL--LQT-----LTGHSSSVWGVAFS-PDDQTIASASDDK 448 (577)
T ss_dssp EECCSSCEEEEEE--CTTSSCEEEEETTSEEEEECTTC--CE--EEE-----EECCSSCEEEEEEC-TTSSEEEEEETTS
T ss_pred ecCCCCCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCC--CE--EEE-----ecCCCCCeEEEEEC-CCCCEEEEEcCCC
Confidence 4689999999999 99999999999999999999642 11 112 34488899999999 8999999999999
Q ss_pred eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342 243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322 (401)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 322 (401)
.|++|+... +.+..+.+|..+|.+++|+|+ +++|++++.|+.|++||. +++++..+.+|...|++++|+|
T Consensus 449 ~v~~w~~~~---~~~~~~~~~~~~v~~~~~spd------~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 449 TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EEEEEETTS---CEEEEEECCSSCEEEEEECTT------SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEEECCC---CEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC
Confidence 999999753 367788899999999999998 799999999999999995 6888999999999999999999
Q ss_pred CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342 323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD 386 (401)
Q Consensus 323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~ 386 (401)
+++ +|++++.|+.|++||.. ++.+.. ..+|...|++++|+|||++|++++.|++|++||
T Consensus 519 dg~-~l~s~~~dg~v~lwd~~-~~~~~~---~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQ-TIASASDDKTVKLWNRN-GQLLQT---LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSS-CEEEEETTSEEEEECTT-SCEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCC-EEEEEECcCEEEEEeCC-CCEEEE---EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 997 78999999999999964 443333 357889999999999999999999999999997
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=315.50 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=207.1
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---EecCCCeeEEEEeCCCCceEEEEecC
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFCQSPVLSCCFAKFNPYLILGGTYS 140 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~d 140 (401)
+...|.+++|+|++ .|++++ .||+|+|||+++++...... .+|...|++++|+|++ ++|++|+.|
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d 148 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVAS----------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKD 148 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEE----------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETT
T ss_pred cCCCEEEEEEeCCC-eEEEEE----------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCC
Confidence 44779999999986 688888 79999999999887665443 3588999999999987 799999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
++|++||+.+++.. ..+.+|.+.|.+++| ++++ .+|++++.|++|++||++... +...+.. ..+.
T Consensus 149 ~~i~iwd~~~~~~~------~~~~~h~~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~-----~~~~ 214 (344)
T 4gqb_B 149 ICIKVWDLAQQVVL------SSYRAHAAQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGC-----SAPG 214 (344)
T ss_dssp SCEEEEETTTTEEE------EEECCCSSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSS-CEEECC---------C
T ss_pred CeEEEEECCCCcEE------EEEcCcCCceEEEEe--cCCCCCceeeeccccccccccccccc-eeeeeec-----ceee
Confidence 99999999987643 335789999999999 7777 478999999999999998632 2222222 2255
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
..+.+++|+|.++.++++|+.|+.|++||++. .+++..+.+|...|++++|+|+. ..+|++|+.|++|+|||+
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~fsp~g-----~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--TSCVLSSAVHSQCVTGLVFSPHS-----VPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSS-----SCCEEEEETTSCEEEECT
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCC--CcEEEEEcCCCCCEEEEEEccCC-----CeEEEEEeCCCeEEEEEC
Confidence 67899999966788899999999999999984 44688899999999999999984 468999999999999999
Q ss_pred eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
+++++ ..+.+|.+.|++++|+|+++.+|++++.|++|++|++.+..
T Consensus 288 ~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 88765 45788999999999999998789999999999999998643
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-43 Score=334.19 Aligned_cols=297 Identities=13% Similarity=0.164 Sum_probs=246.2
Q ss_pred eeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEE
Q psy17342 56 QFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLIL 135 (401)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 135 (401)
.+......+++.+.+++|+|+|+.|++++ ++.|++|++.+++.... ..+|...|++++|+|++ ++|+
T Consensus 9 ~~~~~~~~~~g~~~~~~~spdg~~l~~~~-----------~~~v~l~~~~~~~~~~~-~~~h~~~v~~~~~spdg-~~la 75 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNTPAGDKIQYCN-----------GTSVYTVPVGSLTDTEI-YTEHSHQTTVAKTSPSG-YYCA 75 (611)
T ss_dssp EECCCCCCCTTCCCCCEECTTSSEEEEEE-----------TTEEEEEETTCSSCCEE-ECCCSSCEEEEEECTTS-SEEE
T ss_pred EECCCCCcccCceeEEeeCCCCCEEEeCC-----------CCEEEEecCCCcccCeE-ecCCCCceEEEEECCCC-cEEE
Confidence 33333335568899999999999999988 67999999986655433 34688999999999987 8999
Q ss_pred EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccc
Q psy17342 136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQ 211 (401)
Q Consensus 136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~ 211 (401)
+|+.||+|+|||+.+++.... ..+..|.++|.+++| +|++..|++++.+ +.|++||... ... .
T Consensus 76 sg~~d~~v~lWd~~~~~~~~~----~~~~~~~~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~--~-- 142 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHILK----TTIPVFSGPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGT---SNG--N-- 142 (611)
T ss_dssp EEETTSEEEEEESSSTTCCEE----EEEECSSSCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCC---BCB--C--
T ss_pred EEeCCCCEEEeECCCCcceee----EeecccCCceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCCC---Ccc--e--
Confidence 999999999999976543221 234689999999999 9999999998875 4788888532 111 1
Q ss_pred cccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342 212 YNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY 290 (401)
Q Consensus 212 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~ 290 (401)
+.+|...|.+++|+ |++. .|++|+.|+.|++||... .+....+.+|...|.+++|+|+ +++|++++.
T Consensus 143 ---l~gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspd------g~~las~s~ 210 (611)
T 1nr0_A 143 ---LTGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPD------GSLFASTGG 210 (611)
T ss_dssp ---CCCCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTT------SSEEEEEET
T ss_pred ---ecCCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCC--CeEeeeeccccCceEEEEECCC------CCEEEEEEC
Confidence 34588999999999 5665 699999999999999763 3467788999999999999998 799999999
Q ss_pred CCeEEEEEeeCCCceEEEe-------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce------------
Q psy17342 291 DWSVKLWNIKENKPVHSFN-------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT------------ 351 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------ 351 (401)
|++|++||+.+++++..+. +|.+.|.+++|+|+++ +|++++.|++|++||+.+++....+
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 9999999999999888884 7999999999999997 8999999999999999876543222
Q ss_pred ----------------------------EEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 352 ----------------------------SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 352 ----------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
....+|...|++++|+|+|++|++++.|+.|++||+.+++
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 1223577889999999999999999999999999998874
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.3e-43 Score=328.60 Aligned_cols=317 Identities=18% Similarity=0.297 Sum_probs=261.5
Q ss_pred hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342 3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 82 (401)
Q Consensus 3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 82 (401)
|..-+..+++|+.||.+++|+..... . . ....|...|.+++|+|+++.|++
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~~~--------~-----------------~----~~~~~~~~v~~v~~~~d~~~l~~ 279 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNGQL--------L-----------------Q----TLTGHSSSVNGVAFRPDGQTIAS 279 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCE--------E-----------------E----EECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCE--------E-----------------E----EEecCCCCEEEEEEcCCCCEEEE
Confidence 44567789999999999999853221 0 0 01145688999999999999999
Q ss_pred EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
++ .|+.|++|+.. ++.. .....|...|.+++|+|++ .++++++.|+.|++||...... ..
T Consensus 280 ~~----------~d~~i~~w~~~-~~~~-~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-------~~ 339 (577)
T 2ymu_A 280 AS----------DDKTVKLWNRN-GQLL-QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-------QT 339 (577)
T ss_dssp EE----------TTSCEEEEETT-SCEE-EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-------EE
T ss_pred Ee----------CCCEEEEEeCC-CcEE-EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-------EE
Confidence 99 79999999976 3332 2334578899999999977 7899999999999999865432 23
Q ss_pred ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG 242 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 242 (401)
+..|...|.+++| +|++..+++++.|+.+++|+... .. ... ...|...|.+++|+ +++++|++++.|+
T Consensus 340 ~~~~~~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~~--~~--~~~-----~~~~~~~v~~~~~s-~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 340 LTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNRNG--QL--LQT-----LTGHSSSVRGVAFS-PDGQTIASASDDK 407 (577)
T ss_dssp ECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTC--CE--EEE-----EECCSSCEEEEEEC-TTSSCEEEEETTS
T ss_pred EeCCCCCEEEEEE--CCCCCEEEEEeCCCEEEEEcCCC--CE--EEE-----ecCCCCCeEEEEEC-CCCCEEEEEeCCC
Confidence 4689999999999 99999999999999999999642 11 112 33478899999999 8999999999999
Q ss_pred eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342 243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322 (401)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 322 (401)
.|++|+... +.+..+.+|...|++++|+|+ +++|++++.|+.|++||. +++.+..+.+|...|.+++|+|
T Consensus 408 ~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 408 TVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD------DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EEEEECTTC---CEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEEeCCC---CEEEEecCCCCCeEEEEECCC------CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC
Confidence 999999643 467788899999999999998 799999999999999996 5778889999999999999999
Q ss_pred CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342 323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
+++ +|++++.|+.|++||.. ++.+.. ..+|...|++++|+|+|++|++++.||.|++||.. + ++++.+
T Consensus 478 d~~-~las~~~d~~i~iw~~~-~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~--~~~~~~ 545 (577)
T 2ymu_A 478 DGQ-TIASASDDKTVKLWNRN-GQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTL 545 (577)
T ss_dssp TSC-EEEEEETTSEEEEEETT-SCEEEE---EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S--CEEEEE
T ss_pred CCC-EEEEEeCCCEEEEEcCC-CCEEEE---EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C--CEEEEE
Confidence 997 89999999999999964 443333 34788899999999999999999999999999964 3 344444
No 20
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=306.67 Aligned_cols=300 Identities=16% Similarity=0.302 Sum_probs=244.3
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCC---CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC--CceEEEE
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEP---DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN--PYLILGG 137 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~g 137 (401)
.|...|.+++|+|+++.+++++ +. |+.|++||+.+++........|...|.+++|+|++ ..+|++|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~---------s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMG---------NFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEE---------C--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEec---------CccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 4779999999999998777666 24 89999999998776666666789999999999974 4789999
Q ss_pred ecCCeEEEEECCCCC-CCceeeccccccCCCCcEEEEEEee----cCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342 138 TYSGQIVLWDTRVQK-KTPVHRTPLSVMAHTHPVFCMSVIG----TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212 (401)
Q Consensus 138 ~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 212 (401)
+.||.|++||+.+.+ .. ..+.+|...|.++.|.+ ++++.+|++++.||.|++||++....+...+....
T Consensus 87 ~~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPV------YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp ETTSCEEEECTTSCSSCS------EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred cCCCeEEEEeCCCCCccE------EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 999999999999876 32 23568999999997742 68899999999999999999986443333322211
Q ss_pred ccccCCccceEEEE----eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc---cCCCCCCCcEE
Q psy17342 213 NNKQTKNLAVLSLA----FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR---AQGHIDFSHLY 285 (401)
Q Consensus 213 ~~~~~~~~~v~~~~----~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~~~~l 285 (401)
......+.+++ |+ +++.++++++.|+.|++||++... ......|...|.+++|+| + +.+|
T Consensus 161 ---~~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~------~~~l 227 (357)
T 3i2n_A 161 ---GENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNMA---LRWETNIKNGVCSLEFDRKDIS------MNKL 227 (357)
T ss_dssp ---TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEESCSSSS------CCEE
T ss_pred ---CCCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECccCc---eeeecCCCCceEEEEcCCCCCC------CCEE
Confidence 11244788888 56 789999999999999999998543 234466899999999999 6 7899
Q ss_pred EEEeCCCeEEEEEeeCCCceEEEe-----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC------------
Q psy17342 286 LTSSYDWSVKLWNIKENKPVHSFN-----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV------------ 348 (401)
Q Consensus 286 ~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------ 348 (401)
++++.|+.|++||+++++++..+. .|...|.+++|+|+++.+|++++.||.|++||++.....
T Consensus 228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 999999999999999887776665 899999999999998768999999999999999875533
Q ss_pred ----cceEEeecCCCCeEEEEecCCCcEEE-EEecCCcEEEEEeccC
Q psy17342 349 ----PATSAIVEGAPALSRVTWTPNGTQLC-VGDEKGAITMFDVGEV 390 (401)
Q Consensus 349 ----~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v~iw~~~~~ 390 (401)
..+.....|...|++++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 23334456788999999999999998 8999999999999875
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=306.24 Aligned_cols=273 Identities=18% Similarity=0.247 Sum_probs=232.3
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
+..++||+.|+.++||+...... ..... ..+|...|.+++|+|++..+++++
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~----------------------~~~~~----l~gh~~~v~~~~~~~~~~~l~s~s-- 99 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERL----------------------DLQWS----LEGHQLGVVSVDISHTLPIAASSS-- 99 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEE----------------------EEEEE----ECCCSSCEEEEEECSSSSEEEEEE--
T ss_pred CCEEEEEcCCCCEEEEECCCCCe----------------------eeeee----eccCCCCEEEEEECCCCCEEEEEe--
Confidence 56899999999999999864430 00001 125778999999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.|++|++||+.+++.+..+. .+...+.+++|+|++ .+|++|+.+|.|++|+++++... ..+..|
T Consensus 100 --------~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~------~~~~~~ 163 (321)
T 3ow8_A 100 --------LDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE------YSLDTR 163 (321)
T ss_dssp --------TTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE------EEEECS
T ss_pred --------CCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee------EEecCC
Confidence 79999999999876654443 357789999999987 78999999999999999887643 234678
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
...|.+++| +|++.+|++++.||.|++||+++.. .... +.+|...|.+++|+ |++++|++|+.|+.|++
T Consensus 164 ~~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~---~~~~-----~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 164 GKFILSIAY--SPDGKYLASGAIDGIINIFDIATGK---LLHT-----LEGHAMPIRSLTFS-PDSQLLVTASDDGYIKI 232 (321)
T ss_dssp SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCCCEEEEC-TTSCEEEEECTTSCEEE
T ss_pred CceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc---EEEE-----EcccCCceeEEEEc-CCCCEEEEEcCCCeEEE
Confidence 889999999 9999999999999999999997521 1222 34488899999999 89999999999999999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCc
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA 326 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 326 (401)
||++. ......+.+|...|.+++|+|+ +.+|++++.|++|++||+++++++.++..|...|.+++|+|++.
T Consensus 233 wd~~~--~~~~~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~- 303 (321)
T 3ow8_A 233 YDVQH--ANLAGTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS- 303 (321)
T ss_dssp EETTT--CCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-
T ss_pred EECCC--cceeEEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC-
Confidence 99984 3467788999999999999998 79999999999999999999999999999999999999999997
Q ss_pred EEEEEecCCEEEEEeCC
Q psy17342 327 LFATVEVAGRVDLWNLN 343 (401)
Q Consensus 327 ~l~~~~~d~~i~iwd~~ 343 (401)
+|++++.|+.|++||..
T Consensus 304 ~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 304 KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCeEEEEeCC
Confidence 78999999999999963
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-42 Score=304.22 Aligned_cols=292 Identities=18% Similarity=0.244 Sum_probs=236.7
Q ss_pred ccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE----EEecCCCeeEEEEeCCCCceEEEE
Q psy17342 63 SKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF----EFFCQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 63 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~g 137 (401)
+|.+.|++++|+|+ +++|++++ .|++|+|||+.+.+..... ...|...|.+++|+|++ .+|++|
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s----------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~ 104 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSAS----------RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSG 104 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEE----------TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEc----------CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEE
Confidence 58899999999998 56788888 7999999999865543222 23478899999999977 789999
Q ss_pred ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
+.|+.|++|+....... .....+...+..+.+ .+++..|++++.|+.+++||+.... ..... ..+
T Consensus 105 ~~d~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~-----~~~ 169 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQ-----DES 169 (340)
T ss_dssp ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCE--EEEEC-----SSS
T ss_pred cccccceEEeeccccee------eeecCCCCceeEEEE--eecCccceeecCCCeEEEEEeCCCc--eEEEE-----ecc
Confidence 99999999999876543 223567778888888 8999999999999999999986421 11111 344
Q ss_pred CccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342 218 KNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL 296 (401)
Q Consensus 218 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i 296 (401)
|...+.+++|++.. ...+++++.|+.|++||++. .+.+..+.+|.++|++++|+|+ +++|++|+.|+.|++
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAML 241 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT------SSEEEEEETTCEEEE
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--CceeeEecCCCCcEEEEEECCC------CCEEEEEeCCCeEEE
Confidence 78899999998433 34678899999999999984 3467788999999999999998 799999999999999
Q ss_pred EEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE------EeecCCCCeEEEEecCCC
Q psy17342 297 WNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS------AIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 297 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g 370 (401)
||+++.+++..+.. ...|.+++|+|++. +++++.|+.|++||+++......+. ....|...|++++|+|+|
T Consensus 242 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 242 WDLNEGKHLYTLDG-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EETTTTEEEEEEEC-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEeccCceeeeecC-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 99999999888876 46899999999985 5566779999999998764332221 123567889999999999
Q ss_pred cEEEEEecCCcEEEEEeccCc
Q psy17342 371 TQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 371 ~~l~~~~~dg~v~iw~~~~~~ 391 (401)
++|++|+.||.|+|||+++|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999984
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-43 Score=318.33 Aligned_cols=276 Identities=14% Similarity=0.191 Sum_probs=233.1
Q ss_pred hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342 3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL 82 (401)
Q Consensus 3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 82 (401)
|...+..+++|+.||.|++||......... ...|.+.|.+++|+|++++|++
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------------------l~~h~~~V~~v~~~~~~~~l~s 167 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGDFERT----------------------------LKGHTDSVQDISFDHSGKLLAS 167 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCCCCEE----------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------------------EeccCCcEEEEEEcCCCCEEEE
Confidence 444567899999999999999876541100 0146788999999999999999
Q ss_pred EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
++ .|++|++||+.+++.+..+ ..|...|.+++|+|++ .+|++|+.|+.|++||+.++... ..
T Consensus 168 gs----------~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~------~~ 229 (410)
T 1vyh_C 168 CS----------ADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV------KT 229 (410)
T ss_dssp EE----------TTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE------EE
T ss_pred Ee----------CCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE------EE
Confidence 99 7999999999876554333 3478899999999977 78999999999999999887643 23
Q ss_pred ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC-----------
Q psy17342 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND----------- 231 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 231 (401)
+.+|...|.++.+ ++++.+|++++.|+.|++||+.... .... +.+|...|.+++|+|..
T Consensus 230 ~~~h~~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~---~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 230 FTGHREWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE---CKAE-----LREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp EECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EeCCCccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc---eeeE-----ecCCCceEEEEEEcCcccccchhhhccc
Confidence 5689999999999 9999999999999999999997522 1112 33488899999999421
Q ss_pred --------CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342 232 --------VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303 (401)
Q Consensus 232 --------~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 303 (401)
+.++++|+.|+.|++||++. ..++..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCTTSC
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCC--CceEEEEECCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCc
Confidence 56899999999999999984 4467888999999999999998 7999999999999999999999
Q ss_pred ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342 304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343 (401)
Q Consensus 304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~ 343 (401)
++..+.+|...|++++|+|+++ +|++|+.|+.|++|+++
T Consensus 372 ~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 372 CMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred eEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence 9999999999999999999997 79999999999999864
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-43 Score=312.32 Aligned_cols=285 Identities=19% Similarity=0.273 Sum_probs=215.9
Q ss_pred hhhhhcccccccc------ccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC
Q psy17342 3 WAEAGESQISGTL------HGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ 76 (401)
Q Consensus 3 ~~~~~~~~~~g~~------~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 76 (401)
|.--|.++++|+. ||.+++|+.........+ ......|...|.+++|+|+
T Consensus 50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~------------------------~~~~~~~~~~V~~~~~s~d 105 (357)
T 4g56_B 50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL------------------------CTAGVQTEAGVTDVAWVSE 105 (357)
T ss_dssp ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG------------------------CSEEEECSSCEEEEEEETT
T ss_pred ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE------------------------ecccCCCCCCEEEEEEcCC
Confidence 4456788999987 555666654433311110 0111246678999999999
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce--E-EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--F-EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK 153 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~ 153 (401)
+. +++++ .|++|+|||+.+++.... + ...|...|++++|+|++ ++|++|+.|+.|++||+++++.
T Consensus 106 ~~-~l~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 106 KG-ILVAS----------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp TE-EEEEE----------TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE
T ss_pred CC-EEEEE----------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 85 55667 699999999987654432 2 23578999999999987 7899999999999999988764
Q ss_pred CceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCC
Q psy17342 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV 232 (401)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 232 (401)
. ..+.+|...|.+++| ++++. .+++++.||.|++||++... +...... ..+...+.+++|+|.++
T Consensus 174 ~------~~~~~h~~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~-----~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 174 L------KSYNAHSSEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDF-----CASDTIPTSVTWHPEKD 239 (357)
T ss_dssp E------EEECCCSSCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCC-----TTCCSCEEEEEECTTST
T ss_pred E------EEEcCCCCCEEEEEE--ccCCCceeeeeccCCceEEEECCCCc-eeeeeee-----ccccccccchhhhhccc
Confidence 3 235789999999999 77764 78999999999999998632 2222222 23667899999996567
Q ss_pred CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC
Q psy17342 233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR 312 (401)
Q Consensus 233 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 312 (401)
.+|++|+.|+.|++||++.. +.+..+.+|...|++++|+|+. +.+|++|+.|++|+|||+++++++..+ +|.
T Consensus 240 ~~la~g~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~-----~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~ 311 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHS-----SPFLASISEDCTVAVLDADFSEVFRDL-SHR 311 (357)
T ss_dssp TEEEEEESSSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSS-----SCCEEEEETTSCEEEECTTSCEEEEEC-CCS
T ss_pred ceEEEeecccceeEEECCCC--cEeEEEeccceeEEEEEEcCCC-----CCEEEEEeCCCEEEEEECCCCcEeEEC-CCC
Confidence 78999999999999999843 4678899999999999999984 578999999999999999988776654 799
Q ss_pred CceEEEEECC-CCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 313 DYVMDVQWSP-INPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 313 ~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
..|++++|+| ++. +|++++.||+|++||+.+..
T Consensus 312 ~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 312 DFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEEEECSSSTT-EEEEEETTSCEEEEECC---
T ss_pred CCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCC
Confidence 9999999999 565 89999999999999997644
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-42 Score=300.43 Aligned_cols=285 Identities=15% Similarity=0.205 Sum_probs=237.8
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
+|.+.|.+++|+|++++|++++ .|+.|++|+..+++.... ...|...|.+++|+|++ ++|++|+.|+.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~ 88 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDS-NLLVSASDDKT 88 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred ccCCcEEEEEECCCCCEEEEee----------CCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCC-CEEEEECCCCE
Confidence 5779999999999999999999 799999999987665433 34578899999999977 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||+++++.. ..+.+|...|.+++| +|++.+|++++.|+.|++||++... .... ...|...|
T Consensus 89 i~vwd~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~-----~~~~~~~v 152 (312)
T 4ery_A 89 LKIWDVSSGKCL------KTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGK---CLKT-----LPAHSDPV 152 (312)
T ss_dssp EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCE
T ss_pred EEEEECCCCcEE------EEEcCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCE---EEEE-----ecCCCCcE
Confidence 999999887643 235689999999999 8999999999999999999997522 1112 23477899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
.+++|+ +++.++++++.|+.|++||++... .+..+ ..+..++..++|+|+ +++|++++.|+.|++||+++
T Consensus 153 ~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 153 SAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPN------GKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEEC-TTSSEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTT------SSEEEEEETTTEEEEEETTT
T ss_pred EEEEEc-CCCCEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCC
Confidence 999999 799999999999999999997443 34443 456778999999998 79999999999999999999
Q ss_pred CCceEEEeecCCceE--EEEEC-CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-
Q psy17342 302 NKPVHSFNEFRDYVM--DVQWS-PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD- 377 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~--~v~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~- 377 (401)
++++..+.+|..... ...++ +++. ++++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECSSSSEEEEEEC
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhh---hccCCcEEEEeecCcCCceEEEEc
Confidence 999999988765432 23444 4554 8999999999999999987654433 46788999999999999999987
Q ss_pred -cCCcEEEEEec
Q psy17342 378 -EKGAITMFDVG 388 (401)
Q Consensus 378 -~dg~v~iw~~~ 388 (401)
.|+.|++|+..
T Consensus 300 ~~d~~i~~W~~d 311 (312)
T 4ery_A 300 ENDKTIKLWKSD 311 (312)
T ss_dssp TTTCCEEEEECC
T ss_pred cCCccEEEecCC
Confidence 69999999964
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3e-42 Score=305.68 Aligned_cols=297 Identities=13% Similarity=0.090 Sum_probs=243.9
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG 141 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 141 (401)
|.++|.+++|+|++++|++++ .|+.|++||+.+++ ....+ ..|...|.+++|+|++ .+|++++.||
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~l~~~~~dg 74 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICP----------NNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDS-NRIVTCGTDR 74 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEEC----------SSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTT-TEEEEEETTS
T ss_pred cCCCeEEEEECCCCCEEEEEe----------CCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCC-CEEEEEcCCC
Confidence 668899999999999999998 79999999998765 33222 3578899999999976 7899999999
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
.|++||+.+++.... ..+..|...|.+++| ++++.+|++++.|+.|++||++........... ..+|...
T Consensus 75 ~i~vwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~ 144 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPT----LVILRINRAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRST 144 (372)
T ss_dssp CEEEEEEETTEEEEE----EECCCCSSCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSC
T ss_pred eEEEEECCCCeeeee----EEeecCCCceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCcceeeeee----ecccCCC
Confidence 999999977653322 234678999999999 899999999999999999999863321111111 2347889
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCC----------------CCCCceeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHG----------------NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY 285 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~----------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l 285 (401)
|.+++|+ +++.++++++.|+.|++||++. .....+..+.+|...|.+++|+|+ +++|
T Consensus 145 i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l 217 (372)
T 1k8k_C 145 VLSLDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------GSRV 217 (372)
T ss_dssp EEEEEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS------SSEE
T ss_pred eeEEEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC------CCEE
Confidence 9999999 7999999999999999999641 234567778899999999999998 7899
Q ss_pred EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC--CCC--C-------------
Q psy17342 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL--DTE--V------------- 348 (401)
Q Consensus 286 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~--~------------- 348 (401)
++++.|+.|++||+++++++..+..|...|.+++|+|++. +++++ .|+.|++|++.. +.. .
T Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred EEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 9999999999999999999999999999999999999996 67766 899999999987 310 0
Q ss_pred -------------cc--------eEEeecCCCCeEEEEec-CCC---cEEEEEecCCcEEEEEeccCc
Q psy17342 349 -------------PA--------TSAIVEGAPALSRVTWT-PNG---TQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 349 -------------~~--------~~~~~~~~~~v~~~~~s-~~g---~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.. .....+|...|++++|+ ++| ++|++|+.||.|++|++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 00 11113678899999976 666 999999999999999998864
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=303.57 Aligned_cols=294 Identities=19% Similarity=0.202 Sum_probs=227.0
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+..+|+|+.||.|+||+...+... .... ....|...|.+++|+|++++|+
T Consensus 23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~-----------------------~~~~--~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWI-----------------------CKSV--LSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EECTTSSCEEEEETTSCEEEEEEETTEEE-----------------------EEEE--ECSSCSSCEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCCcce-----------------------eeee--eccccCCcEEEEEECCCCCEEE
Confidence 56667889999999999999997654300 0000 0125778999999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
+++ .|+.|+||+...+....... ..|...|.+++|+|++ ++|++|+.|+.|++||+.........
T Consensus 78 s~s----------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~--- 143 (345)
T 3fm0_A 78 SAS----------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECV--- 143 (345)
T ss_dssp EEE----------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEE---
T ss_pred EEE----------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEE---
Confidence 999 79999999998654322222 3478999999999977 79999999999999999876432111
Q ss_pred ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE 240 (401)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 240 (401)
..+..|...|.+++| +|++.+|++++.|+.|++||++... ...... +.+|...|++++|+ |++++|++|+.
T Consensus 144 ~~~~~h~~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~-----~~~h~~~v~~l~~s-p~g~~l~s~s~ 214 (345)
T 3fm0_A 144 SVLNSHTQDVKHVVW--HPSQELLASASYDDTVKLYREEEDD-WVCCAT-----LEGHESTVWSLAFD-PSGQRLASCSD 214 (345)
T ss_dssp EEECCCCSCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred EEecCcCCCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCC-EEEEEE-----ecCCCCceEEEEEC-CCCCEEEEEeC
Confidence 234689999999999 9999999999999999999987421 111112 34588999999999 89999999999
Q ss_pred CceEEEEeCCCCCC-------------CceeeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---
Q psy17342 241 DGNVYSACRHGNKA-------------GNVECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--- 303 (401)
Q Consensus 241 d~~i~~~~~~~~~~-------------~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--- 303 (401)
|+.|++|+...... .++..+.+ |...|.+++|+|. +..|++++.|+.|++|+...+.
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~~~d~~i~vw~~~~~~~~~ 288 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL------TGALATACGDDAIRVFQEDPNSDPQ 288 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT------TCCEEEEETTSCEEEEEECTTSCTT
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC------CCEEEEEeCCCeEEEEEeCCCCCcc
Confidence 99999998642111 12233444 8889999999998 7899999999999999987542
Q ss_pred -ceE-----EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 304 -PVH-----SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 304 -~~~-----~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
+.. ...+|...|++++|+|+++.+|++++.||.|++|++.+.+...
T Consensus 289 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 222 2246889999999999986689999999999999998876543
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-41 Score=295.91 Aligned_cols=284 Identities=11% Similarity=0.188 Sum_probs=237.7
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCCCCceEEEEe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKFNPYLILGGT 138 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~ 138 (401)
.|...|.+++|+|++++|++++ |+.|++||+.+++....... .|...|.+++|+|++ ++|++++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 116 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGG 116 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEc
Confidence 5778999999999998888776 89999999987654333222 478899999999977 7888999
Q ss_pred cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
.||.|++||+.+.+.... ..+..|...|.+++| ++++.++++++.||.|++||++.. ..... ...|
T Consensus 117 ~d~~i~~~d~~~~~~~~~----~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~-----~~~~ 182 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIK----AELTSSAPACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQ-----FQGH 182 (337)
T ss_dssp SSSEEEEEECCCC--EEE----EEEECSSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTT---EEEEE-----ECCC
T ss_pred CCCcEEEEECCCCCccee----eecccCCCceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCC---ceeee-----eecc
Confidence 999999999988763222 234689999999999 899999999999999999999752 11222 2347
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
...+.+++|+ ++++.+++++.|+.|++||++... .+..+ .+...+.+++|+|+ ++++++++.|+.|++||
T Consensus 183 ~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~~------~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 183 TDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPT------GEWLAVGMESSNVEVLH 252 (337)
T ss_dssp SSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTT------SSEEEEEETTSCEEEEE
T ss_pred cCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECCC------CCEEEEEcCCCcEEEEE
Confidence 8899999999 799999999999999999997543 34444 47889999999998 79999999999999999
Q ss_pred eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342 299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378 (401)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 378 (401)
+++++. ..+..|...|.+++|+|+++ +|++++.||.|++||+.+++... ...+...+.+++|+|++++|++++.
T Consensus 253 ~~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 253 VNKPDK-YQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIF----QSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp TTSSCE-EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE----EEECSSCEEEEEECTTSCEEEEEET
T ss_pred CCCCCe-EEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEE----EecCCCcEEEEEECCCCCEEEEecC
Confidence 987764 46778899999999999997 78999999999999999876542 2356788999999999999999999
Q ss_pred CCcEEEEEec
Q psy17342 379 KGAITMFDVG 388 (401)
Q Consensus 379 dg~v~iw~~~ 388 (401)
||.|++|++.
T Consensus 327 dg~i~iw~~~ 336 (337)
T 1gxr_A 327 DKKATVYEVI 336 (337)
T ss_dssp TSCEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 9999999984
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-42 Score=303.15 Aligned_cols=275 Identities=15% Similarity=0.211 Sum_probs=227.8
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|.|..-+..+++|+.||.+++||......+.. + ..|...|.+++|+|++++|
T Consensus 61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------------~----~~~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------------I----PLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTCCEEEE------------------------E----ECSSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCcceE------------------------e----ecCCccEEEEEECCCCCEE
Confidence 35666788999999999999999765541100 0 1355789999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCc---eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTP---EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH 157 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~ 157 (401)
++++ .|+.|++|++.+..... .....|...|.++.|++++ .+++++.|+.|++||+.+++..
T Consensus 113 ~s~~----------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~--- 177 (340)
T 1got_B 113 ACGG----------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT--- 177 (340)
T ss_dssp EEEE----------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE---
T ss_pred EEEe----------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE---
Confidence 9999 79999999998654322 2234578999999999865 4888899999999999887643
Q ss_pred eccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE
Q psy17342 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237 (401)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 237 (401)
..+.+|.+.|.+++| +|++.++++++.|+.|++||++... . ... +.+|...|.+++|+ |++++|++
T Consensus 178 ---~~~~~h~~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~-~--~~~-----~~~h~~~v~~v~~~-p~~~~l~s 243 (340)
T 1got_B 178 ---TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-C--RQT-----FTGHESDINAICFF-PNGNAFAT 243 (340)
T ss_dssp ---EEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCS-E--EEE-----ECCCSSCEEEEEEC-TTSSEEEE
T ss_pred ---EEEcCCCCceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCe-e--EEE-----EcCCcCCEEEEEEc-CCCCEEEE
Confidence 235789999999999 8999999999999999999997522 1 111 34588899999999 79999999
Q ss_pred EcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCce
Q psy17342 238 GCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV 315 (401)
Q Consensus 238 ~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 315 (401)
|+.|+.|++||++... .+..+. .+...|.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+.+|...|
T Consensus 244 ~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 244 GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 9999999999998543 344443 33457999999999 7999999999999999999999999999999999
Q ss_pred EEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342 316 MDVQWSPINPALFATVEVAGRVDLWN 341 (401)
Q Consensus 316 ~~v~~~~~~~~~l~~~~~d~~i~iwd 341 (401)
.+++|+|++. +|++|+.|+.|+|||
T Consensus 316 ~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 316 SCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EEEEEcCCCC-EEEEEcCCccEEecC
Confidence 9999999997 799999999999997
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=313.98 Aligned_cols=334 Identities=14% Similarity=0.186 Sum_probs=254.0
Q ss_pred chhhhhc-cccccccccccccccc----cCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC
Q psy17342 2 DWAEAGE-SQISGTLHGLQADWNE----EGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ 76 (401)
Q Consensus 2 ~~~~~~~-~~~~g~~~g~~~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 76 (401)
.|...+. ++++|+.||.+++|++ .....+-.+.....+..+... ......|...|.+++|+|+
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL------------SASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC------------C------CBCEEEEEECTT
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc------------cccccCCCCceEEEEEcCC
Confidence 4555677 8999999999999998 554421010000000000000 0011135679999999999
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV 156 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~ 156 (401)
+++|++++ .|+.|++||.. ++... ....|...|.+++|+|++ .+|++++.||.|++||+.+++....
T Consensus 120 ~~~l~~~~----------~dg~i~i~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 120 GNSIVTGV----------ENGELRLWNKT-GALLN-VLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp SSEEEEEE----------TTSCEEEEETT-SCEEE-EECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEe----------CCCeEEEEeCC-CCeee-eccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEE
Confidence 99999999 79999999943 44332 233478899999999977 6888999999999999987764322
Q ss_pred eeccccccCCCCc---------------EEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 157 HRTPLSVMAHTHP---------------VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 157 ~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
+..+... +.+++| ++++ .+++++.||.|++||++... .. .. ...|...
T Consensus 187 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~i~~~d~~~~~-~~--~~-----~~~~~~~ 249 (425)
T 1r5m_A 187 ------FELKETGGSSINAENHSGDGSLGVDVEW--VDDD-KFVIPGPKGAIFVYQITEKT-PT--GK-----LIGHHGP 249 (425)
T ss_dssp ------ECCC---------------CCCBSCCEE--EETT-EEEEECGGGCEEEEETTCSS-CS--EE-----ECCCSSC
T ss_pred ------eeccccCccceeeccccCCcceeeEEEE--cCCC-EEEEEcCCCeEEEEEcCCCc-ee--ee-----eccCCCc
Confidence 2334444 888998 6664 58899999999999998632 11 11 2347889
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
|.+++|+ +++.+|++++.|+.|++||++.. ..+..+.+|...|.+++|+|+ + ++++++.|+.|++||+++
T Consensus 250 i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~------~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 250 ISVLEFN-DTNKLLLSASDDGTLRIWHGGNG--NSQNCFYGHSQSIVSASWVGD------D-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEEEEEE-TTTTEEEEEETTSCEEEECSSSB--SCSEEECCCSSCEEEEEEETT------T-EEEEEETTSEEEEEETTT
T ss_pred eEEEEEC-CCCCEEEEEcCCCEEEEEECCCC--ccceEecCCCccEEEEEECCC------C-EEEEEeCCCcEEEEECCC
Confidence 9999999 78999999999999999999843 467788889999999999997 6 999999999999999999
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-----------------CcceEEeecCCC--CeE
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-----------------VPATSAIVEGAP--ALS 362 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~~~~--~v~ 362 (401)
++++..+..|...|.+++|+|+++ +|++++.||.|++||+.+... ...+.....+.. .|+
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 398 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF 398 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence 999999999999999999999997 899999999999999987651 002222334544 899
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEec
Q psy17342 363 RVTWTPNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 363 ~~~~s~~g~~l~~~~~dg~v~iw~~~ 388 (401)
+++|+|++++|++++.||.|++|+++
T Consensus 399 ~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 399 DLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999985
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-41 Score=290.59 Aligned_cols=256 Identities=18% Similarity=0.228 Sum_probs=216.1
Q ss_pred EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342 114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193 (401)
Q Consensus 114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 193 (401)
...|...|++++|+|++ .+|++|+.||.|++||+.++... ..+..|..+|.+++| ++++++|++++.|++|
T Consensus 9 ~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEV------RSIQVTETPVRAGKF--IARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--EGGGTEEEEEETTSEE
T ss_pred ecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcee------EEeeccCCcEEEEEE--eCCCCEEEEECCCCEE
Confidence 34578999999999987 78999999999999999876543 234689999999999 8999999999999999
Q ss_pred EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342 194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 273 (401)
++||+.+.. .... +.+|...|.+++|+ |++.+|++|+.|+.|++||++... .....+.+|...|.+++|+
T Consensus 80 ~vwd~~~~~---~~~~-----~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 80 RVFNYNTGE---KVVD-----FEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp EEEETTTCC---EEEE-----EECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEEC
T ss_pred EEEECCCCc---EEEE-----EeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEEC
Confidence 999997632 2222 34588999999999 889999999999999999987432 2456788999999999999
Q ss_pred ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEECC--CCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDTEVPA 350 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 350 (401)
|.. +.+|++|+.|++|++||++++++...+. .|...+..++|+| +++ +|++++.|+.|++||+++++.+..
T Consensus 150 p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 150 PKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp TTC-----TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCC-----CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCCcccee
Confidence 954 6899999999999999998887777665 4567899999987 555 899999999999999998765544
Q ss_pred eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342 351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~ 399 (401)
+ .+|...|.+++|+|++++|++|+.||.|++||+.++ ++++.+.
T Consensus 224 ~---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~ 267 (304)
T 2ynn_A 224 L---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLN 267 (304)
T ss_dssp E---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEEC
T ss_pred e---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeecc
Confidence 4 478889999999999999999999999999999987 4454443
No 32
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.3e-41 Score=286.70 Aligned_cols=272 Identities=16% Similarity=0.186 Sum_probs=210.2
Q ss_pred EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342 115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC 194 (401)
Q Consensus 115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 194 (401)
..|...|++++|+|++ ++|++|+.|++|+|||+........ ..+.+|.++|++++|.+..++.+|++++.|++|+
T Consensus 6 ~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~----~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCC----EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred cCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEE----EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 3578999999999987 7899999999999999975432211 3457999999999993222478999999999999
Q ss_pred EeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342 195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS 272 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 272 (401)
+||++... ...... ...|...|.+++|+ |+ +.+|++++.|+.|++||++.........+.+|...|.+++|
T Consensus 81 iWd~~~~~-~~~~~~-----~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 81 IWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp EEEBSSSC-BCCCEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred EEEcCCCc-eEEEEE-----eecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence 99997521 111111 23478899999999 54 78999999999999999975432234567889999999999
Q ss_pred CccCCCC-------CCCcEEEEEeCCCeEEEEEeeCCC----ceEEEeecCCceEEEEECCCC--CcEEEEEecCCEEEE
Q psy17342 273 HRAQGHI-------DFSHLYLTSSYDWSVKLWNIKENK----PVHSFNEFRDYVMDVQWSPIN--PALFATVEVAGRVDL 339 (401)
Q Consensus 273 ~~~~~~~-------~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~--~~~l~~~~~d~~i~i 339 (401)
+|..... ..+++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ ..+|++++.|++|+|
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 9962100 003689999999999999999876 556788899999999999985 348999999999999
Q ss_pred EeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc-Cccceeeee
Q psy17342 340 WNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE-VGIACLKFI 398 (401)
Q Consensus 340 wd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~-~~~~~l~~~ 398 (401)
||++........... ..+...|.+++|+|+|++|++++.||.|++|+... +..+++..+
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC---
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEecccc
Confidence 999875422111111 24567899999999999999999999999999873 344554443
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-41 Score=323.78 Aligned_cols=291 Identities=18% Similarity=0.254 Sum_probs=234.3
Q ss_pred ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC----ceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342 63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----PEFEFFCQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~g 137 (401)
.|.+.|++++|+|++ ..|++++ .|++|++|++.+.... ......|...|.+++|+|++ .+|++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s----------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sg 448 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSAS----------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSG 448 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEE----------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEe----------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEE
Confidence 588999999999976 5677888 8999999999764322 12334588999999999977 799999
Q ss_pred ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
+.||.|++||+.++... ..+.+|...|.+++| ++++.+|++++.|++|++||+... ...... .. ..+
T Consensus 449 s~Dg~v~vwd~~~~~~~------~~~~~h~~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~--~~~~~~-~~--~~~ 515 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVST------RRFVGHTKDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGE--CKYTIS-EG--GEG 515 (694)
T ss_dssp ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSC--EEEEEC-SS--TTS
T ss_pred eCCCcEEEEECCCCcce------eEEeCCCCCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCC--cceeec-cC--CCC
Confidence 99999999999887543 235789999999999 999999999999999999997531 111111 11 245
Q ss_pred CccceEEEEeccCCC--CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342 218 KNLAVLSLAFPQNDV--NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK 295 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~ 295 (401)
|...|.+++|+ +++ ..+++++.|+.|++||++.. +....+.+|.+.|++++|+|+ +++|++|+.|+.|+
T Consensus 516 h~~~v~~~~~~-~~~~~~~l~s~s~d~~v~vwd~~~~--~~~~~~~~h~~~v~~v~~spd------g~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 516 HRDWVSCVRFS-PNTLQPTIVSASWDKTVKVWNLSNC--KLRSTLAGHTGYVSTVAVSPD------GSLCASGGKDGVVL 586 (694)
T ss_dssp CSSCEEEEEEC-SCSSSCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSBCE
T ss_pred CCCcEEEEEEe-CCCCcceEEEEeCCCeEEEEECCCC--cEEEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEE
Confidence 88899999999 554 57999999999999999843 467788999999999999998 79999999999999
Q ss_pred EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------------cCCC
Q psy17342 296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------------EGAP 359 (401)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~ 359 (401)
+||+++++++..+.. ...|.+++|+|++. +++++ .++.|++||++++..+..+.... .+..
T Consensus 587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp EEETTTTEEEECCBC-SSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred EEECCCCceEEEecC-CCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence 999999988877765 56799999999986 55555 57789999999876443322100 0112
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.+++++|+|+|++|++|+.||.|++|++..
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 378999999999999999999999999853
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.4e-42 Score=301.65 Aligned_cols=294 Identities=12% Similarity=0.146 Sum_probs=235.5
Q ss_pred ccccceEEEEecCC----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe----cCCCeeEEEEeCCCC---
Q psy17342 63 SKNRNVTYMDWSTQ----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF----CQSPVLSCCFAKFNP--- 131 (401)
Q Consensus 63 ~~~~~v~~~~~~~~----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~--- 131 (401)
.|.++|.+++|+|+ ...+++++ .++.|++||+.+++.+..+... +...|++++|+|++.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~----------~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATV----------GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEE----------ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred CCCCceEEEEEecccCCCCceEEEEC----------CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 57899999999984 33455555 4789999999977665444422 457899999999742
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDL 210 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 210 (401)
.+|++|+.||.|++||+.+++.. ..+.+|...|.+++| +| ++.+|++++.||.|++||++... ....+
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~------~~~~~~~~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~ 154 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCI------KHYVGHGNAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDT---LVAIF 154 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEE------EEEESCCSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTE---EEEEE
T ss_pred CEEEEecCCCEEEEEEchhceEe------eeecCCCCcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCe---EEEEe
Confidence 58999999999999999887643 234689999999999 88 89999999999999999997532 12222
Q ss_pred ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--------------------------ceeeecCCC
Q psy17342 211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--------------------------NVECYEGHE 264 (401)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~~ 264 (401)
.. ...|...|.+++|+ +++.+|++++.|+.|++||++..... ......+|.
T Consensus 155 ~~--~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T 3k26_A 155 GG--VEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR 231 (366)
T ss_dssp CS--TTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS
T ss_pred cc--cccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc
Confidence 11 23588899999999 79999999999999999998743210 112233499
Q ss_pred CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc--------------eEEEeecCCceEEEEECCC--CCcEE
Q psy17342 265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--------------VHSFNEFRDYVMDVQWSPI--NPALF 328 (401)
Q Consensus 265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~v~~v~~~~~--~~~~l 328 (401)
..|.+++|+ ++++++++.|+.|++||+++++. +..+..|...|.+++|+|+ ++ +|
T Consensus 232 ~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l 302 (366)
T 3k26_A 232 NYVDCVRWL--------GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-ML 302 (366)
T ss_dssp SCCCEEEEE--------TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EE
T ss_pred ceEEEEEEc--------CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EE
Confidence 999999998 36999999999999999988754 7778889999999999999 86 89
Q ss_pred EEEecCCEEEEEeCCCCCCCcceE-EeecC--CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 329 ATVEVAGRVDLWNLNLDTEVPATS-AIVEG--APALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 329 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
++++.||.|++||+.+++...... ....| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999887654222 22334 58899999999999999999999999999863
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.3e-41 Score=299.09 Aligned_cols=302 Identities=12% Similarity=0.182 Sum_probs=240.6
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-----CCceEEEecCCCeeEEEEeCC---CC---
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFCQSPVLSCCFAKF---NP--- 131 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~---~~--- 131 (401)
.|.+.|++++|+| ++|++++ .|+.|++||+.+++ ........|...|++++|+|+ ..
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhcCeEEEEecC--CeEEEEc----------CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 5889999999999 6899998 79999999999766 122233457899999999996 24
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCC-----CCcEEEEEEeec----CCceE-EEEEeCCCcEEEeeccC-
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH-----THPVFCMSVIGT----QNAHN-LISISNDGRLCSWSLEM- 200 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~~~-l~s~~~dg~i~~wd~~~- 200 (401)
.+|++++.||.|++|++.+....... ....+..| ...|.+++| + +++.. |++++.||.|++||++.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKV-IFEKLDLLDSDMKKHSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCE-EEEEECCSCTTGGGSCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccc-cceeecccccccCCCcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 68889999999999999887641100 01224566 589999999 7 89999 99999999999999986
Q ss_pred -----CCCCcc----ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC---C---CC
Q psy17342 201 -----LSSPQE----TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG---H---EG 265 (401)
Q Consensus 201 -----~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~---~---~~ 265 (401)
...... .+.........|...|.+++|+ +++ .+++++.|+.|++||++. ...+..+.. | ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCC
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCC--CceeEEEeccccccccCC
Confidence 222110 1100000003377889999999 677 999999999999999984 346777888 8 99
Q ss_pred ceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceEEEee-------------cCCceEEEEECCCCCcEEE
Q psy17342 266 PVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVHSFNE-------------FRDYVMDVQWSPINPALFA 329 (401)
Q Consensus 266 ~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~l~ 329 (401)
+|.+++|+|+ +.+|++++.| +.|++||+++++++..+.. |...|.+++|+|+++ +|+
T Consensus 235 ~i~~i~~~~~------~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 307 (397)
T 1sq9_A 235 SIRSVKFSPQ------GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLC 307 (397)
T ss_dssp CEEEEEECSS------TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEE
T ss_pred ccceEEECCC------CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC-EEE
Confidence 9999999998 7999999999 9999999999999999998 999999999999997 899
Q ss_pred EEecCCEEEEEeCCCCCCCcceEEee---cC---------------CCCeEEEEecCCC----------cEEEEEecCCc
Q psy17342 330 TVEVAGRVDLWNLNLDTEVPATSAIV---EG---------------APALSRVTWTPNG----------TQLCVGDEKGA 381 (401)
Q Consensus 330 ~~~~d~~i~iwd~~~~~~~~~~~~~~---~~---------------~~~v~~~~~s~~g----------~~l~~~~~dg~ 381 (401)
+++.||.|++||+++++.+..+.... .| ...|++++|+|+| ++|++++.||.
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 99999999999999876554443100 34 7889999999998 79999999999
Q ss_pred EEEEEeccC
Q psy17342 382 ITMFDVGEV 390 (401)
Q Consensus 382 v~iw~~~~~ 390 (401)
|++|++.++
T Consensus 388 i~iw~~~~g 396 (397)
T 1sq9_A 388 IRWFREAGG 396 (397)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEcCCC
Confidence 999999886
No 36
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-42 Score=312.85 Aligned_cols=307 Identities=11% Similarity=0.047 Sum_probs=230.0
Q ss_pred cccceEEEEecCCC---------CCeEEEEecc---------CCCCCCCCCcEEEEEeCcCCCCCce--E-EEecCCCee
Q psy17342 64 KNRNVTYMDWSTQH---------PELLLASYHR---------NKEAPNEPDGVCLIWNTKFKKTTPE--F-EFFCQSPVL 122 (401)
Q Consensus 64 ~~~~v~~~~~~~~~---------~~l~~~~~~~---------~~~~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~~~v~ 122 (401)
+.+.|.+|+|+|++ ++||+++... ..+++++.|++|+|||+.+++.... . ..+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46789999999987 6788877432 1367788999999999987664322 1 234578899
Q ss_pred EEEEeCCC-----CceEEEEecCCeEEEEECCCCCCCc-----eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342 123 SCCFAKFN-----PYLILGGTYSGQIVLWDTRVQKKTP-----VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192 (401)
Q Consensus 123 ~~~~~~~~-----~~~l~~g~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 192 (401)
+++|+|++ ..+|++|+.||+|++||+....... .......+.+|...|.+++| +++ ..|++|+.||+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~--s~~-~~lasgs~Dgt 288 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF--LSP-TTVVCGFKNGF 288 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE--SSS-SEEEEEETTSE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe--cCC-CeEEEEeCCCE
Confidence 99999962 3699999999999999998764320 11111245789999999999 665 48999999999
Q ss_pred EEEeeccCCCCCccccccccccccCCccceEEE--EeccCCC-CeEEEEcCCceEEEEeCCCCCCCceeeecCCCC--ce
Q psy17342 193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL--AFPQNDV-NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG--PV 267 (401)
Q Consensus 193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~v 267 (401)
|++||++....+.. . +.+|...|+++ +|+ +++ .+|++|+.|+.|++||++.. +....+.+|.. .|
T Consensus 289 V~lWD~~~~~~~~~--~-----~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~~~--~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 289 VAEFDLTDPEVPSF--Y-----DQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPKDI--ATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEETTBCSSCSE--E-----EECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGGGH--HHHCEEEEECSCCSC
T ss_pred EEEEECCCCCCceE--E-----eecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECCCC--CcccccccccccCcc
Confidence 99999986322211 1 34488999999 455 676 89999999999999999743 34555666653 58
Q ss_pred eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE 347 (401)
Q Consensus 268 ~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 347 (401)
.+++|+|+ +..+++++.|++|++||++++.++.++.+|...|++|+|+|+++ +|++|+.|++|++||+.....
T Consensus 359 ~~v~fsp~------~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~~ 431 (524)
T 2j04_B 359 VPVVYCPQ------IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRLL 431 (524)
T ss_dssp CCEEEETT------TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSSTT
T ss_pred cceEeCCC------cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhhc
Confidence 89999998 68899999999999999999999899999999999999999998 789999999999998643211
Q ss_pred Cc------------c-----------------------------eEEeecCCCCeEEEEecCCC---cEEEEEecCCcEE
Q psy17342 348 VP------------A-----------------------------TSAIVEGAPALSRVTWTPNG---TQLCVGDEKGAIT 383 (401)
Q Consensus 348 ~~------------~-----------------------------~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~ 383 (401)
.. . .....+|...|.+++|+|++ ..||+|+.||.|+
T Consensus 432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 432 HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence 00 0 00112356789999999996 4999999999999
Q ss_pred EEEeccC
Q psy17342 384 MFDVGEV 390 (401)
Q Consensus 384 iw~~~~~ 390 (401)
||++.-.
T Consensus 512 lw~l~~~ 518 (524)
T 2j04_B 512 LEYLSLE 518 (524)
T ss_dssp EEECSCC
T ss_pred EEEcccc
Confidence 9998653
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.6e-42 Score=310.03 Aligned_cols=294 Identities=13% Similarity=0.110 Sum_probs=225.5
Q ss_pred ccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-ecCCCeeEEEEeCCCCceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFNPYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~d 140 (401)
.|.+.|+|++|+|. +..||+|+ .||.|+|||+.+++......+ +|.+.|++|+|+|.+..+|++|+.|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs----------~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGS----------KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEE----------TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEe----------CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 36678999999995 45677888 899999999987665544433 4889999999999666899999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
|+|++||+++...... .....+...+.+++| ++++.+|++|+.||.|++||++. .. ... +.+|..
T Consensus 187 ~~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~--~~--~~~-----~~~h~~ 251 (435)
T 4e54_B 187 GTTRLQDFKGNILRVF----ASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG--KE--LWN-----LRMHKK 251 (435)
T ss_dssp SCEEEEETTSCEEEEE----ECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS--CB--CCC-----SBCCSS
T ss_pred CEEEEeeccCCceeEE----eccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc--ce--eEE-----Eecccc
Confidence 9999999976543211 112345566788998 89999999999999999999863 11 122 345889
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
.|.+++|+|....++++|+.|+.|++||++..... ......+|..+|++++|+|+ +.+|++++.|+.|+|||+
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd------g~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD------GARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT------SSEEEEEESSSCEEEEES
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC------CCeeEEEcCCCEEEEEEC
Confidence 99999999544557889999999999999754332 23344679999999999998 799999999999999999
Q ss_pred eCCCceEEEeecCC------ceEEEEECCCCCcEEEEEe------------cCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342 300 KENKPVHSFNEFRD------YVMDVQWSPINPALFATVE------------VAGRVDLWNLNLDTEVPATSAIVEGAPAL 361 (401)
Q Consensus 300 ~~~~~~~~~~~~~~------~v~~v~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 361 (401)
++++....+..|.. .+..+.|+|++. ++++++ .++.|++||..+++.+..+ ..+|...|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~~~~v 402 (435)
T 4e54_B 326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPESSGI 402 (435)
T ss_dssp SSSSSEEEECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSSCCCC
T ss_pred CCCccceEEecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCCCCcE
Confidence 99888877766543 233456777765 344443 3467999999988754433 23566778
Q ss_pred EEE-EecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 362 SRV-TWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 362 ~~~-~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.++ +|+|+|++|++|+ |+.|+||++++++
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 877 6999999999876 7889999999885
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-41 Score=297.05 Aligned_cols=278 Identities=15% Similarity=0.259 Sum_probs=227.5
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|.|..-+.+|+||+.||.+++||........ .+ ..|...|.+++|+|++..|
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~------------------------~~----~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH------------------------AV----TMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEE------------------------EE----ECSSSCCCEEEECTTSSEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCcce------------------------EE----ecCCCCEEEEEECCCCCEE
Confidence 3566678899999999999999975443100 00 1244679999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCC-----CCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~ 155 (401)
++++ .|+.+++|++.... ........|...|.+++|+|++ ..|++|+.|++|++||+++++..
T Consensus 122 asg~----------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~- 189 (354)
T 2pbi_B 122 ACGG----------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL- 189 (354)
T ss_dssp EEES----------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE-
T ss_pred EEee----------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE-
Confidence 9998 79999999986432 1222334578999999999976 68889999999999999887643
Q ss_pred eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE
Q psy17342 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235 (401)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (401)
..+.+|...|.+++|.+++++..|++++.||.|++||++... .. .. +..|...|.+++|+ |++..|
T Consensus 190 -----~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~--~~-----~~~h~~~v~~v~~~-p~~~~l 255 (354)
T 2pbi_B 190 -----QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CV--QA-----FETHESDVNSVRYY-PSGDAF 255 (354)
T ss_dssp -----EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EE--EE-----ECCCSSCEEEEEEC-TTSSEE
T ss_pred -----EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EE--EE-----ecCCCCCeEEEEEe-CCCCEE
Confidence 235789999999999555567899999999999999998632 21 11 34488899999999 799999
Q ss_pred EEEcCCceEEEEeCCCCCCCceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC
Q psy17342 236 VVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313 (401)
Q Consensus 236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 313 (401)
++|+.|+.|++||++... .+..+.. +...+.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+.+|..
T Consensus 256 ~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~ 327 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLS------GRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327 (354)
T ss_dssp EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred EEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCC------CCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence 999999999999998543 3334432 3457899999998 79999999999999999999999999999999
Q ss_pred ceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342 314 YVMDVQWSPINPALFATVEVAGRVDLWN 341 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd 341 (401)
.|.+++|+|+++ +|++++.|+.|++|+
T Consensus 328 ~v~~l~~spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred cEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence 999999999997 799999999999996
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-42 Score=309.49 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=244.9
Q ss_pred cceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342 66 RNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143 (401)
Q Consensus 66 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v 143 (401)
..|.+++|+|+++ +|+++.+.....++.+.|+.|+|||+.++... ......|...|++++|+|++ .+|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNN-KIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSS-SCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCC-CeEEEEccCCeE
Confidence 5699999999997 67777433333333358999999999876422 22334578899999999977 788999999999
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCc---cccccccccccCCc
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQ---ETRDLQYNNKQTKN 219 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~~~~~ 219 (401)
++|++........ ....+..|...|.+++| +|+ +.+|++++.|+.|++||++...... ....+.. ...|.
T Consensus 92 ~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~ 165 (416)
T 2pm9_A 92 ELYSTNEANNAIN--SMARFSNHSSSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ--SMSSV 165 (416)
T ss_dssp EEECCSSTTSCCC--EEEECCCSSSCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC--SCCSS
T ss_pred EEeeccccccccc--chhhccCCccceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc--ccCCC
Confidence 9999987321110 11335789999999999 887 8899999999999999998643110 1111111 34588
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeCCC-
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSYDW- 292 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~- 292 (401)
..|.+++|+|..+.++++++.|+.|++||++.. +.+..+..| ...|.+++|+|+. ..++++++.|+
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~ 238 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDN 238 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSS
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--CcceEEeccccccccCCceEEEEECCCC-----CCEEEEEECCCC
Confidence 899999999433889999999999999999853 355666655 7899999999984 47999999998
Q ss_pred --eEEEEEeeCC-CceEEEe-ecCCceEEEEECC-CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEec
Q psy17342 293 --SVKLWNIKEN-KPVHSFN-EFRDYVMDVQWSP-INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWT 367 (401)
Q Consensus 293 --~i~iwd~~~~-~~~~~~~-~~~~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 367 (401)
.|++||++++ +++..+. .|...|.+++|+| ++. +|++++.|+.|++||+++++.+..+ ..|...|++++|+
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~s 314 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQF---PARGNWCFKTKFA 314 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEE---ECSSSCCCCEEEC
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceee---cCCCCceEEEEEC
Confidence 9999999986 6778888 8999999999999 775 8999999999999999987655444 3677889999999
Q ss_pred CCC-cEEEEEecCCcEEEEEeccCc
Q psy17342 368 PNG-TQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 368 ~~g-~~l~~~~~dg~v~iw~~~~~~ 391 (401)
|++ .+|++++.||.|++|++.+.+
T Consensus 315 ~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 315 PEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp TTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCCCEEEEEecCCcEEEEEccCCC
Confidence 999 899999999999999998864
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-41 Score=300.75 Aligned_cols=289 Identities=16% Similarity=0.169 Sum_probs=231.3
Q ss_pred ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-ecCCCeeEEEEeCCCCceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFNPYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~d 140 (401)
.|...|.+++|+|++ ++|++++ .|+.|+|||+.+++....+.. .|...|.+++|+|++..+|++++.|
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGS----------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEE----------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCCEEEEEc----------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 577999999999999 8888888 799999999997766554432 4789999999999555899999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
+.|++||+.+...... .....|...|.+++| ++++.+|++++.|+.|++||++. .+ ... ...|..
T Consensus 141 ~~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~--~~--~~~-----~~~h~~ 205 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVF----AKTDSWDYWYCCVDV--SVSRQMLATGDSTGRLLLLGLDG--HE--IFK-----EKLHKA 205 (383)
T ss_dssp TEEEEEETTSCEEEEE----ECCCCSSCCEEEEEE--ETTTTEEEEEETTSEEEEEETTS--CE--EEE-----EECSSS
T ss_pred CEEEEEECCCCceEEE----eccCCCCCCeEEEEE--CCCCCEEEEECCCCCEEEEECCC--CE--EEE-----eccCCC
Confidence 9999999986332111 122456689999999 89999999999999999999842 22 222 334888
Q ss_pred ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCC--CCceeeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCCCeEEE
Q psy17342 221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNK--AGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYDWSVKL 296 (401)
Q Consensus 221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d~~i~i 296 (401)
.|.+++|+ +++. ++++++.|+.|++||++... ...+..+ +|...|.+++|+| + +.+|++++.|+.|++
T Consensus 206 ~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~------~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 206 KVTHAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD------STKLLTTDQRNEIRV 277 (383)
T ss_dssp CEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT------SCEEEEEESSSEEEE
T ss_pred cEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC------CCEEEEEcCCCcEEE
Confidence 99999999 6776 89999999999999998532 2344444 6999999999999 7 799999999999999
Q ss_pred EEeeCCCceEEEeecC-----------------CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCC
Q psy17342 297 WNIKENKPVHSFNEFR-----------------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359 (401)
Q Consensus 297 wd~~~~~~~~~~~~~~-----------------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 359 (401)
||+++++....+..|. ..+..++|+|+++ + +++.|+.|++||+.+++.+..+.. ..+..
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~-~~~~~ 353 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRD-PNAAG 353 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECB-TTBCS
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecC-CCCCc
Confidence 9999988888777653 3445577777775 3 777899999999998876544421 11356
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.+..++|+|++++|++|+ ||.|++||+++
T Consensus 354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 677789999999999997 99999999975
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.1e-41 Score=302.26 Aligned_cols=327 Identities=12% Similarity=0.164 Sum_probs=250.2
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|...+.++++|+.||.+++||.........+ .....+....|+|++++|+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~l~ 113 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-----------------------------KRADYTAVDTAKLQMRRFI 113 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTS-----------------------------CSCCEEEEEEECSSSCEEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEE-----------------------------ecCCceEEEEEecCCCEEE
Confidence 34556788999999999999997655422111 0113355567899999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~ 161 (401)
+++ .|+.|++||+.+++... ....|...|++++|+|++ .+|++|+.|+.|++||+.+++.. .
T Consensus 114 ~~~----------~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~------~ 175 (420)
T 3vl1_A 114 LGT----------TEGDIKVLDSNFNLQRE-IDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP------R 175 (420)
T ss_dssp EEE----------TTSCEEEECTTSCEEEE-ETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC------E
T ss_pred EEE----------CCCCEEEEeCCCcceee-ecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc------e
Confidence 999 79999999998654332 112578999999999977 79999999999999999987654 2
Q ss_pred cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc-----------------cccCCccceEE
Q psy17342 162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN-----------------NKQTKNLAVLS 224 (401)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~ 224 (401)
.+.+|...|.+++| +|++.+|++++.|+.|++||++... ....+..... ....+...+.+
T Consensus 176 ~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 252 (420)
T 3vl1_A 176 TLIGHRATVTDIAI--IDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252 (420)
T ss_dssp EEECCSSCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred EEcCCCCcEEEEEE--cCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence 34689999999999 8999999999999999999998632 1111111000 00012345555
Q ss_pred EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeCC
Q psy17342 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~ 302 (401)
++|+ ++++++++|+.||.|++||++... .... ...|...|.+++|+|+ +. +|++++.|+.|++||++++
T Consensus 253 ~~~s-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~------~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 253 LEFG-TYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGN------NANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp TCSS-CTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSS------CTTEEEEEETTSEEEEEETTCT
T ss_pred eEEc-CCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCC------CCCEEEEEeCCCeEEEEEcCCC
Confidence 6667 789999999999999999997543 3333 3468899999999998 56 9999999999999999987
Q ss_pred C-ceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc------ceEEeecCCCCeEEEEecCCCc---
Q psy17342 303 K-PVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP------ATSAIVEGAPALSRVTWTPNGT--- 371 (401)
Q Consensus 303 ~-~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~--- 371 (401)
+ ++..+.. |...|.++.+. ++. +|++++.|+.|++||+....... .......+...|.+++|+|+++
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSC
T ss_pred cCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcc
Confidence 4 4777877 67778888665 564 89999999999999998743321 1222346678899999999999
Q ss_pred EEEEEecCCcEEEEEecc
Q psy17342 372 QLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 372 ~l~~~~~dg~v~iw~~~~ 389 (401)
.|++.+.+|.+.+|++++
T Consensus 402 ~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEESCC
T ss_pred eEEEEcCCceEEEEeccC
Confidence 777888899999999865
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=292.85 Aligned_cols=295 Identities=15% Similarity=0.192 Sum_probs=246.3
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|.+.|++++|+|++++|++++ .|+.|++||+.+++....+ ..|...|.+++|+|++ .+|++++.||.
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~l~s~~~dg~ 97 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCS----------KDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCFT-KYCVTGSADYS 97 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEE----------SSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTS-SEEEEEETTTE
T ss_pred EeeceEEEEEEcCCCCEEEEEe----------CCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCCC-CEEEEEeCCCe
Confidence 5779999999999999999999 7999999999877655433 3478899999999976 78999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCCCcccccccc---cc
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSSPQETRDLQY---NN 214 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~---~~ 214 (401)
|++||+.+++.... ..|...|.+++| ++++.++++++.+ +.|.+||+.............. ..
T Consensus 98 i~iwd~~~~~~~~~-------~~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 168 (369)
T 3zwl_B 98 IKLWDVSNGQCVAT-------WKSPVPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK 168 (369)
T ss_dssp EEEEETTTCCEEEE-------EECSSCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred EEEEECCCCcEEEE-------eecCCCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence 99999988764322 237889999999 9999999999999 9999999976432221111100 00
Q ss_pred ccCCcc--ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342 215 KQTKNL--AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 215 ~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~ 292 (401)
...+.. .+.+++|+ ++++.+++++.||.|++||++.. ...+..+..|...|.+++|+|+ +.+|++++.|+
T Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~ 240 (369)
T 3zwl_B 169 IITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPD------LTYFITSSRDT 240 (369)
T ss_dssp EECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTT------SSEEEEEETTS
T ss_pred ccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCC------CCEEEEecCCc
Confidence 122333 89999999 79999999999999999999752 3467788889999999999998 79999999999
Q ss_pred eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--------------EEEEEeCCCCCCCcceEEeecCC
Q psy17342 293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--------------RVDLWNLNLDTEVPATSAIVEGA 358 (401)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~ 358 (401)
.|++||+++++.+..+. +...+.+++|+|+++ ++++++.++ .+++||+.+++....+ ..|.
T Consensus 241 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~ 315 (369)
T 3zwl_B 241 NSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---QGHF 315 (369)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEE---ECCS
T ss_pred eEEEEECCCCceeeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---eccc
Confidence 99999999999888887 578899999999998 677887777 8999999988755444 4678
Q ss_pred CCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
..|++++|+|++++|++++.||.|++|+++++.
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 899999999999999999999999999998763
No 43
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=328.81 Aligned_cols=360 Identities=12% Similarity=0.097 Sum_probs=253.7
Q ss_pred hccccccccccccccccccCCCCCCCCcc-----ccccccCCC----CCCCCCceeeeeeec---cccccccceEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQ-----DLQFDMTGD----EKSSTKLSFCRQFFD---EKWSKNRNVTYMDWS 74 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 74 (401)
+..+|+|+.||.|+||+......+..... ...|.. +. ......+.+|..... ..+.|...|++++|+
T Consensus 29 g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~s 107 (902)
T 2oaj_A 29 QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTD 107 (902)
T ss_dssp TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECC
T ss_pred CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEEC
Confidence 46788888888888888766544322221 122333 22 112334444432111 112356789999999
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-----------EecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342 75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-----------FFCQSPVLSCCFAKFNPYLILGGTYSGQI 143 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~g~~dg~v 143 (401)
|++++|++++ .||.|++||+++++.. .+. ..|.++|++++|+|++..++++|+.||.|
T Consensus 108 p~g~~l~sgs----------~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 108 ASLDWMLIGL----------QNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp TTCSEEEEEE----------TTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred CCCCEEEEEc----------CCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 9999999999 8999999999876542 111 23678999999999765789999999999
Q ss_pred EEEECCCCCCCceeecc------------ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc------
Q psy17342 144 VLWDTRVQKKTPVHRTP------------LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ------ 205 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~------ 205 (401)
+||+++.+........ .....|...|.+++| +|++.+|++++.||+|++||++......
T Consensus 177 -lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f--spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 177 -TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY--HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp -EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE--CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred -EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 9999887543222110 011345688999999 9999999999999999999985421000
Q ss_pred -----------------c--ccc--c----c-----------cc------c-----------------------------
Q psy17342 206 -----------------E--TRD--L----Q-----------YN------N----------------------------- 214 (401)
Q Consensus 206 -----------------~--~~~--~----~-----------~~------~----------------------------- 214 (401)
. ... . . .. .
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 0 000 0 0 00 0
Q ss_pred ---------------------------------------------------------------ccCCccceEEEE-----
Q psy17342 215 ---------------------------------------------------------------KQTKNLAVLSLA----- 226 (401)
Q Consensus 215 ---------------------------------------------------------------~~~~~~~v~~~~----- 226 (401)
...|...|++++
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 000001222222
Q ss_pred -----------------------------eccCCCCeEEEEcCCceEEEEeCCCCCCCceeee----c-----CCCCcee
Q psy17342 227 -----------------------------FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY----E-----GHEGPVV 268 (401)
Q Consensus 227 -----------------------------~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~----~-----~~~~~v~ 268 (401)
|+ ++++.|++|+.|+.|++||+..........+ . +|...|.
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 23 4677899999999999999875432111111 1 7899999
Q ss_pred eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---------------------------------------------
Q psy17342 269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--------------------------------------------- 303 (401)
Q Consensus 269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------------------------- 303 (401)
+++|+|+ +++||+|+.|++|+|||+.+++
T Consensus 493 svafspd------g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 493 KISFAAE------TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp EEEEETT------TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred EEEecCC------CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 9999999 7999999999999999998763
Q ss_pred ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE--Eee-cCCCCeEEEEec-----CCC---cE
Q psy17342 304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS--AIV-EGAPALSRVTWT-----PNG---TQ 372 (401)
Q Consensus 304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~-~~~~~v~~~~~s-----~~g---~~ 372 (401)
++..+.+|.+.|++++|+|+| +||+|+.|++|+|||+++...+.... ... +|...|++++|+ ||| ++
T Consensus 567 ~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 366778899999999999999 79999999999999987654322111 111 677889999999 885 89
Q ss_pred EEEEecCCcEEEEEe---ccC
Q psy17342 373 LCVGDEKGAITMFDV---GEV 390 (401)
Q Consensus 373 l~~~~~dg~v~iw~~---~~~ 390 (401)
|++|+.|++|++||+ .++
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGG
T ss_pred EEEEecCCcEEEEEEecCCCC
Confidence 999999999999999 665
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-40 Score=284.47 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=237.4
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|.+.|.+++| |++++|++++ .||.|++||+.+++... ....|...|.+++|+|++ .+|++|+.||.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~----------~dg~v~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 82 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVS----------RDGTVRLWSKDDQWLGT-VVYTGQGFLNSVCYDSEK-ELLLFGGKDTM 82 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEE----------TTSEEEEEEESSSEEEE-EEEECSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred CCCCCcEEEEe-cCCCEEEEEE----------cCCcEEEEECCCCEEEE-EeecCCccEEEEEECCCC-CEEEEecCCCe
Confidence 57799999999 9999999999 89999999998655443 344568999999999976 78999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++|++........ ...+..|...|.+++| ++..+++++.||.|++||.. ..... ...|...+
T Consensus 83 i~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d~~-----~~~~~-----~~~~~~~v 145 (313)
T 3odt_A 83 INGVPLFATSGEDP---LYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWKEG-----SLVYN-----LQAHNASV 145 (313)
T ss_dssp EEEEETTCCTTSCC----CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETT-----EEEEE-----EECCSSCE
T ss_pred EEEEEeeecCCCCc---ccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEcCC-----cEEEe-----cccCCCce
Confidence 99999987543221 1235789999999998 46799999999999999922 11222 23478899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
.++++.|++++.+++++.|+.|++||.. .....+.. |...|.+++|+|+ +. +++++.|+.|++||+++
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~------~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDD------GH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEET------TE-EEEEETTSEEEEEETTT
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCC------Ce-EEEccCCCeEEEEECCc
Confidence 9999996699999999999999999943 24556666 8999999999998 45 99999999999999999
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
++++..+..|...|.+++|+|++. +++++.||.|++||+++++....+ ..+...|.+++|+|+++ +++++.||.
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVI---TLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEE---ECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEE---eccCceEEEEEEccCCC-EEEEeCCCc
Confidence 999999999999999999999983 788999999999999988755544 35677899999999998 667999999
Q ss_pred EEEEEeccCcc
Q psy17342 382 ITMFDVGEVGI 392 (401)
Q Consensus 382 v~iw~~~~~~~ 392 (401)
|++|++++++.
T Consensus 289 i~iw~~~~~~~ 299 (313)
T 3odt_A 289 VRIFSQEKSRW 299 (313)
T ss_dssp EEEEESCGGGC
T ss_pred EEEEeCCCCce
Confidence 99999998753
No 45
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-42 Score=305.43 Aligned_cols=288 Identities=17% Similarity=0.212 Sum_probs=231.8
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|+|..-+.+++||+.||.++|||......+. .+ ..|...|.+++|+|++++|
T Consensus 72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~------------------------~~----~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTH------------------------AI----KLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp EEECTTSSCEEEEETTSEEEEEETTTTEEEE------------------------EE----ECCCTTCCCCEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCccce------------------------EE----ecCCCCEEEEEECCCCCEE
Confidence 3566678899999999999999976544110 00 1355789999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCC------CCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKK------TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~ 154 (401)
++++ .|+.+++|++.+.. .......+|.+.|.++.|+|++...|++|+.|++|++||+.+++..
T Consensus 124 as~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~ 193 (380)
T 3iz6_a 124 ACGG----------LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193 (380)
T ss_dssp EECC----------SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred EEee----------CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence 9999 79999999987522 1222334678899999999987778999999999999999987754
Q ss_pred ceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCC
Q psy17342 155 PVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233 (401)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (401)
..... ....+|...|.+++| ++ ++.+|++|+.|++|++||++........ +.+|...|.+++|+ |++.
T Consensus 194 ~~~~~-~~~~~h~~~v~~~~~--~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-------~~~h~~~v~~v~~~-p~~~ 262 (380)
T 3iz6_a 194 SIFGS-EFPSGHTADVLSLSI--NSLNANMFISGSCDTTVRLWDLRITSRAVRT-------YHGHEGDINSVKFF-PDGQ 262 (380)
T ss_dssp EEECC-CSSSSCCSCEEEEEE--CSSSCCEEEEEETTSCEEEEETTTTCCCCEE-------ECCCSSCCCEEEEC-TTSS
T ss_pred EEeec-ccCCCCccCeEEEEe--ecCCCCEEEEEECCCeEEEEECCCCCcceEE-------ECCcCCCeEEEEEe-cCCC
Confidence 33221 112579999999999 54 7889999999999999999743322221 34588999999999 8999
Q ss_pred eEEEEcCCceEEEEeCCCCCCCceeeecCC-------CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342 234 NFVVGCEDGNVYSACRHGNKAGNVECYEGH-------EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH 306 (401)
Q Consensus 234 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 306 (401)
+|++|+.|+.|++||++.. ..+..+..+ ...|++++|+|+ +.+|++|+.||.|++||+..++.+.
T Consensus 263 ~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 263 RFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTCCEEE
T ss_pred eEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCCceEE
Confidence 9999999999999999843 344444433 234899999999 7999999999999999999888887
Q ss_pred EE----eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 307 SF----NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 307 ~~----~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
.+ .+|.+.|.+++|+|++. +|++|+.|++|++|++...+
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCc
Confidence 77 57999999999999997 89999999999999998654
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-40 Score=296.56 Aligned_cols=284 Identities=18% Similarity=0.223 Sum_probs=235.8
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
.+.+++|++ ..+++++ .|+.|++||+.+++........|...|++++|+|++ .+|++|+.||.|++|
T Consensus 95 ~~~~~~~s~--~~l~~~~----------~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVA----------LERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIY 161 (401)
T ss_dssp TCBCEEECT--TSEEEEE----------ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred eEEEEeecC--CCEEEEE----------CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEE
Confidence 355677775 4677777 699999999998877766666678999999999976 789999999999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (401)
|+.+++.. ..+..|...|.+++| ++..+++++.||.|++||++....... . ...|...|.+++
T Consensus 162 d~~~~~~~------~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-----~~~~~~~v~~~~ 224 (401)
T 4aez_A 162 DVESQTKL------RTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIG--T-----LQGHSSEVCGLA 224 (401)
T ss_dssp ETTTCCEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred ECcCCeEE------EEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceee--E-----EcCCCCCeeEEE
Confidence 99887643 234689999999999 456999999999999999985332222 1 344888999999
Q ss_pred eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCc
Q psy17342 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKP 304 (401)
Q Consensus 227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~ 304 (401)
|+ +++.+|++|+.|+.|++||++. ...+..+..|...|.+++|+|+. ..++++++ .|+.|++||++++++
T Consensus 225 ~~-~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~p~~-----~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 225 WR-SDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQ-----SNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETTC--SSEEEEECCCSSCCCEEEECTTS-----TTEEEEECCTTTCEEEEEETTTCCE
T ss_pred Ec-CCCCEEEEEeCCCeEEEccCCC--CCccEEecCCcceEEEEEECCCC-----CCEEEEecCCCCCEEEEEECCCCCE
Confidence 99 7999999999999999999984 44677888999999999999974 57788876 799999999999999
Q ss_pred eEEEeecCCceEEEEECCCCCcEEEE--EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342 305 VHSFNEFRDYVMDVQWSPINPALFAT--VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI 382 (401)
Q Consensus 305 ~~~~~~~~~~v~~v~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 382 (401)
+..+. +...|.+++|+|+++ ++++ |+.||.|++||+.++....... ...|...|.+++|+|+|++|++++.||.|
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEEe-CCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 88886 467899999999998 5666 4489999999998865444332 24678899999999999999999999999
Q ss_pred EEEEeccCc
Q psy17342 383 TMFDVGEVG 391 (401)
Q Consensus 383 ~iw~~~~~~ 391 (401)
++|++.+++
T Consensus 374 ~iw~~~~~~ 382 (401)
T 4aez_A 374 KFWRVYDGD 382 (401)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCc
Confidence 999999874
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-39 Score=292.63 Aligned_cols=283 Identities=18% Similarity=0.281 Sum_probs=233.2
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
++.|+||+++ .|++|. |++|+|||..+++....+..+ |...|++|+|+|++ .+|++|+.||.|++|
T Consensus 108 ~~~l~wS~~n-~lAvgl-----------d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLW 174 (420)
T ss_dssp CBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred ceeEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEE
Confidence 5679999864 555555 999999999998877666554 56789999999987 799999999999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (401)
|+.+++.. ..+.+|...+.++++ ++..+++++.|+.+++||......... . +.+|...+..+.
T Consensus 175 d~~~~~~~------~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~--~-----~~~h~~~~~~~~ 237 (420)
T 4gga_A 175 DVQQQKRL------RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA--T-----LSGHSQEVCGLR 237 (420)
T ss_dssp ETTTTEEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred EcCCCcEE------EEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeE--E-----ecccccceeeee
Confidence 99987643 235789999999987 567999999999999999875322221 1 345888999999
Q ss_pred eccCCCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcEEEEE--eCCCeEEEEEeeCC
Q psy17342 227 FPQNDVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS--SYDWSVKLWNIKEN 302 (401)
Q Consensus 227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~ 302 (401)
++ +++.++++++.|+.+++|+...... ..+.....|...|.+++|+|.. ..+++++ +.|++|++||+.++
T Consensus 238 ~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~-----~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 238 WA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EC-TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC-----TTEEEEEECTTTCEEEEEETTTT
T ss_pred ec-CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc-----ccEEEEEeecCCCEEEEEeCCcc
Confidence 99 8999999999999999999875432 2456677899999999999986 6777765 46999999999999
Q ss_pred CceEEEeecCCceEEEEECCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 303 KPVHSFNEFRDYVMDVQWSPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
+++..+..| ..+.++.|+|+++.+++++ +.|+.|+|||+.+++.+..+ .+|...|++++|+|+|++|++|+.||+
T Consensus 312 ~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---~gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 312 ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 998888874 5788999999998544433 37899999999988765544 478899999999999999999999999
Q ss_pred EEEEEeccC
Q psy17342 382 ITMFDVGEV 390 (401)
Q Consensus 382 v~iw~~~~~ 390 (401)
|+|||+.+.
T Consensus 388 vriWdv~~~ 396 (420)
T 4gga_A 388 LRLWRCFEL 396 (420)
T ss_dssp EEEECCSCS
T ss_pred EEEEECCCC
Confidence 999999764
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-40 Score=287.47 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=208.9
Q ss_pred eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC
Q psy17342 112 EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG 191 (401)
Q Consensus 112 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 191 (401)
.....|...|++++|+|++ ++|++|+.|++|++||+.++..... ..+.+|.++|.+++|.+..++.+|++++.|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~----~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILI----ADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEE----EEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEE----EEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 3445689999999999987 7999999999999999987542111 2357999999999993222478999999999
Q ss_pred cEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeEEEEcCCceEEEEeCCCCCC-CceeeecCCCCceee
Q psy17342 192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCEDGNVYSACRHGNKA-GNVECYEGHEGPVVG 269 (401)
Q Consensus 192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~v~~ 269 (401)
+|++||++... ...... ..+|...|.+++|+|. ++.+|++|+.|+.|++|+++.... .....+.+|...|.+
T Consensus 82 ~v~iWd~~~~~-~~~~~~-----~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 82 KVIIWREENGT-WEKSHE-----HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp CEEEECCSSSC-CCEEEE-----ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEEEEECCCCc-ceEEEE-----ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99999997521 111222 3458889999999943 278999999999999999875421 123556789999999
Q ss_pred eecCccCCC-----------CCCCcEEEEEeCCCeEEEEEeeCC---CceEEEeecCCceEEEEECCCC---CcEEEEEe
Q psy17342 270 LSSHRAQGH-----------IDFSHLYLTSSYDWSVKLWNIKEN---KPVHSFNEFRDYVMDVQWSPIN---PALFATVE 332 (401)
Q Consensus 270 i~~~~~~~~-----------~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~---~~~l~~~~ 332 (401)
++|+|.... +..+.+|++|+.|++|++||++.. +++..+.+|...|.+++|+|++ ..+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 999986210 011368999999999999999755 3566788899999999999986 23899999
Q ss_pred cCCEEEEEeCCCCCCC-cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec-cCccceeeeee
Q psy17342 333 VAGRVDLWNLNLDTEV-PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG-EVGIACLKFIT 399 (401)
Q Consensus 333 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~-~~~~~~l~~~~ 399 (401)
.|++|++||+.+.... ........|...|.+++|+|+|++|++++.||.|++|+.. .+...++..+.
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeecc
Confidence 9999999999863211 1111123567889999999999999999999999999986 44556666554
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=294.44 Aligned_cols=293 Identities=16% Similarity=0.292 Sum_probs=233.4
Q ss_pred ccccceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeC----cCCCC------CceEEE---------ecCCCee
Q psy17342 63 SKNRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNT----KFKKT------TPEFEF---------FCQSPVL 122 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~----~~~~~------~~~~~~---------~~~~~v~ 122 (401)
.|.+.|.+++|+|+++ +|++++ .|+.|++|++ .+++. ...+.. +|...|+
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGE----------KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT 112 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEE----------TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE
T ss_pred eccCceEEEEECCCCCcEEEEec----------CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceE
Confidence 3558899999999999 899888 7999999999 76652 211111 1466999
Q ss_pred EEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC
Q psy17342 123 SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202 (401)
Q Consensus 123 ~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 202 (401)
+++|+|++ .+|++|+.||.|++||.. +... ..+..|...|.+++| +|++.+|++++.|+.|++||+....
T Consensus 113 ~~~~s~~~-~~l~~~~~dg~i~i~~~~-~~~~------~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 113 CLAWSHDG-NSIVTGVENGELRLWNKT-GALL------NVLNFHRAPIVSVKW--NKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETT-SCEE------EEECCCCSCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTE
T ss_pred EEEEcCCC-CEEEEEeCCCeEEEEeCC-CCee------eeccCCCccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCc
Confidence 99999977 789999999999999933 3221 234689999999999 8999999999999999999997532
Q ss_pred CCccccccccc--------cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342 203 SPQETRDLQYN--------NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274 (401)
Q Consensus 203 ~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 274 (401)
....+..... ........+.+++|+ ++ ..+++++.++.|++||+... ..+..+.+|..+|.+++|+|
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 183 -VMQHFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQITEK--TPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp -EEEEECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETTCS--SCSEEECCCSSCEEEEEEET
T ss_pred -EEEEeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcCCC--ceeeeeccCCCceEEEEECC
Confidence 1111111100 000011118889998 44 56899999999999999854 45777889999999999999
Q ss_pred cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI 354 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 354 (401)
+ +++|++++.|+.|++||+++++++..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+
T Consensus 258 ~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~--- 326 (425)
T 1r5m_A 258 T------NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALS--- 326 (425)
T ss_dssp T------TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred C------CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEec---
Confidence 8 7899999999999999999999999999999999999999998 7889999999999999887644433
Q ss_pred ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
..+...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 327 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 327 IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 3567899999999999999999999999999998864
No 50
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-40 Score=321.90 Aligned_cols=306 Identities=10% Similarity=0.077 Sum_probs=217.9
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|..+|.+++|+| +++|++++ .|++|+|||+.+++.+..+ .+...|++++|+|++ .+|++|+.||.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s----------~D~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp~g-~~l~sgs~dg~ 121 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVIN----------AKDTVYVLSLYSQKVLTTV--FVPGKITSIDTDASL-DWMLIGLQNGS 121 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEE----------TTCEEEEEETTTCSEEEEE--ECSSCEEEEECCTTC-SEEEEEETTSC
T ss_pred CCCCCEEEEEEcC-CCEEEEEE----------CcCeEEEEECCCCcEEEEE--cCCCCEEEEEECCCC-CEEEEEcCCCc
Confidence 4678999999999 87899999 8999999999987665444 467899999999977 79999999999
Q ss_pred EEEEECCCCCCCceee----cc-ccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCcccccccc----
Q psy17342 143 IVLWDTRVQKKTPVHR----TP-LSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQY---- 212 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~----~~-~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---- 212 (401)
|++||+++........ .. ....+|.++|.+++| +|+ +..+++++.||.| +||++... ....+....
T Consensus 122 V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~~~~~~~~~g~ 197 (902)
T 2oaj_A 122 MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVTL-TYSLVENE-IKQSFIYELPPFA 197 (902)
T ss_dssp EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCEE-EEETTTTE-EEEEECCCBCTTC
T ss_pred EEEEECCCCccccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCcE-EEECCCCc-eEEEEecccCCcC
Confidence 9999998765321100 00 224689999999999 785 5789999999999 99997632 221111110
Q ss_pred -------ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee--ee---cC-------------CCCce
Q psy17342 213 -------NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE--CY---EG-------------HEGPV 267 (401)
Q Consensus 213 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~---~~-------------~~~~v 267 (401)
.....|...|.+++|+ |++.+|++|+.|+.|++||.+..+ ++. .+ .. |..+|
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSGH--MIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTCC--EEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred CCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCc--EEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 0012345789999999 889999999999999999997532 222 12 11 34578
Q ss_pred eeeecCccCCCCCCCc----------------------------------------------------------------
Q psy17342 268 VGLSSHRAQGHIDFSH---------------------------------------------------------------- 283 (401)
Q Consensus 268 ~~i~~~~~~~~~~~~~---------------------------------------------------------------- 283 (401)
++++|+|... ++.+.
T Consensus 275 ~~v~w~~~~~-pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 275 SKVYWMCENN-PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPR 353 (902)
T ss_dssp EEEEEEECSS-TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCS
T ss_pred eEEEEEecCC-CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCC
Confidence 8888853210 00012
Q ss_pred ------------EEEEEeCCCeEEEEEeeCCCceEE-----------------------------------------Eee
Q psy17342 284 ------------LYLTSSYDWSVKLWNIKENKPVHS-----------------------------------------FNE 310 (401)
Q Consensus 284 ------------~l~s~~~d~~i~iwd~~~~~~~~~-----------------------------------------~~~ 310 (401)
.+++++.|+.|++||+.++.+... +.+
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G 433 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKG 433 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCC
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccC
Confidence 344445556666666644422111 122
Q ss_pred cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc--ceEEee------cCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342 311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP--ATSAIV------EGAPALSRVTWTPNGTQLCVGDEKGAI 382 (401)
Q Consensus 311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~dg~v 382 (401)
|...+.+++|+|+++ +|++|+.|++|++||+.++.... .+.... +|...|++++|+|||++||+|+.||+|
T Consensus 434 ~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV 512 (902)
T 2oaj_A 434 GVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV 512 (902)
T ss_dssp SBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred CcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence 333344456678886 89999999999999999875321 122211 567889999999999999999999999
Q ss_pred EEEEeccCc
Q psy17342 383 TMFDVGEVG 391 (401)
Q Consensus 383 ~iw~~~~~~ 391 (401)
+||++.+++
T Consensus 513 ~lwd~~~~~ 521 (902)
T 2oaj_A 513 VLFKYEVNQ 521 (902)
T ss_dssp EEEEEEECC
T ss_pred EEEEecCcc
Confidence 999998863
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=295.81 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=234.2
Q ss_pred ccccceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcC---CCCC-ceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342 63 SKNRNVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKF---KKTT-PEFEFFCQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 63 ~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g 137 (401)
.|.+.|++++|+| ++++|++++ .|+.|+|||+.+ +... ....+.|...|++++|+|++ .+|++|
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~ 129 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGS----------DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVS 129 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEE----------TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEec----------CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEE
Confidence 5789999999999 999999999 799999999976 4422 35566789999999999966 789999
Q ss_pred ecCCeEEEEECC---CCCCCceee----ccccccC--CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342 138 TYSGQIVLWDTR---VQKKTPVHR----TPLSVMA--HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR 208 (401)
Q Consensus 138 ~~dg~v~iw~~~---~~~~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 208 (401)
+.||.|++||+. .++...... ..+.+.. +...+.++.+..++++.+|++++.|+.|++||++.. .....+
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~ 208 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-ERLQII 208 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eeeEEE
Confidence 999999999995 332211110 0011222 778888998766899999999999999999999862 222222
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEE
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLT 287 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s 287 (401)
.. ..|...|++++|+ +++.+|++|+.||.|++||++. ..++..+. .|..+|.+++|+|.- +++ +.+|++
T Consensus 209 ~~-----~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-s~~-~~~l~s 278 (437)
T 3gre_A 209 EN-----SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRF--NVLIRSWSFGDHAPITHVEVCQFY-GKN-SVIVVG 278 (437)
T ss_dssp EC-----CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTT--TEEEEEEBCTTCEEEEEEEECTTT-CTT-EEEEEE
T ss_pred cc-----CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCC--ccEEEEEecCCCCceEEEEecccc-CCC-ccEEEE
Confidence 11 1167899999999 7899999999999999999984 34566665 788899999665531 011 679999
Q ss_pred EeCCCeEEEEEeeCCCceEEEee--------------------------cCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342 288 SSYDWSVKLWNIKENKPVHSFNE--------------------------FRDYVMDVQWSPINPALFATVEVAGRVDLWN 341 (401)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd 341 (401)
++.|+.|++||+++++++..+.. |...|.+++|+ +++ +|++++.|+.|++||
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFS 356 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEE
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEE
Confidence 99999999999999988887764 44557888888 554 899999999999999
Q ss_pred CCCCCCCcceEEe----------------------------------ecCCCCeEEEEecCC--CcEEEEEecCCcEEEE
Q psy17342 342 LNLDTEVPATSAI----------------------------------VEGAPALSRVTWTPN--GTQLCVGDEKGAITMF 385 (401)
Q Consensus 342 ~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~s~~--g~~l~~~~~dg~v~iw 385 (401)
+.+++....+... ..|...|++++|+++ +.+|++|+.||.|+||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 9987765444310 127889999999998 8899999999999999
Q ss_pred E
Q psy17342 386 D 386 (401)
Q Consensus 386 ~ 386 (401)
+
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-39 Score=284.77 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=216.9
Q ss_pred hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342 6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY 85 (401)
Q Consensus 6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 85 (401)
-+..++||+.|++|++||+......... .... .....|...|.+++|+|++.++++++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------------~~~~----~~l~~h~~~V~~~~~~~~~~~l~s~s- 95 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYF-----------------GIPH----KALTGHNHFVSDLALSQENCFAISSS- 95 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBS-----------------EEEE----EEECCCSSCEEEEEECSSTTEEEEEE-
T ss_pred CCCEEEEEcCCCEEEEEECCcCCccccc-----------------cccc----chhccCCCceEEEEECCCCCEEEEEc-
Confidence 4678999999999999998654311000 0000 11125778999999999999999999
Q ss_pred ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342 86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA 165 (401)
Q Consensus 86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 165 (401)
.|++|++||+.+++....+ ..|...|.+++|+|++ .+|++|+.|+.|++||+...... .......
T Consensus 96 ---------~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~ 160 (343)
T 2xzm_R 96 ---------WDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF----SSAEKEN 160 (343)
T ss_dssp ---------TTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----ECCTTTS
T ss_pred ---------CCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----eeecccC
Confidence 7999999999987655433 3578999999999987 78899999999999999743211 1122347
Q ss_pred CCCcEEEEEEeecCCc----------eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE
Q psy17342 166 HTHPVFCMSVIGTQNA----------HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235 (401)
Q Consensus 166 ~~~~v~~~~~~~~~~~----------~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 235 (401)
|...|.+++| +|++ .+|++++.|+.|++||... ..... +.+|...|.+++|+ |++++|
T Consensus 161 ~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~-----~~~h~~~v~~~~~s-~~g~~l 228 (343)
T 2xzm_R 161 HSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYT-----FKAHESNVNHLSIS-PNGKYI 228 (343)
T ss_dssp CSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEE-----EECCSSCEEEEEEC-TTSSEE
T ss_pred CCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEE-----EcCccccceEEEEC-CCCCEE
Confidence 9999999999 6665 7899999999999999431 11112 34488899999999 899999
Q ss_pred EEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE--EEe----
Q psy17342 236 VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH--SFN---- 309 (401)
Q Consensus 236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~---- 309 (401)
++|+.|+.|++||+..... ....+ .+...|.+++|+|+ +.+++++ .|+.|++||+.+++... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~-~~~~~-~~~~~v~~v~~sp~------~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~ 299 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTY-PQREF-DAGSTINQIAFNPK------LQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI 299 (343)
T ss_dssp EEEETTCEEEEEESSCCSS-CSEEE-ECSSCEEEEEECSS------SCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred EEEcCCCeEEEEECCCCcc-cceee-cCCCcEEEEEECCC------CCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc
Confidence 9999999999999853322 23333 35567999999998 5666654 58899999998766544 443
Q ss_pred -------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 310 -------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 310 -------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+|...|.+++|+|+++ +|++|+.||.|++|++.++
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEcc
Confidence 5778899999999998 7899999999999998754
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-39 Score=280.12 Aligned_cols=278 Identities=19% Similarity=0.295 Sum_probs=227.0
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+..+++|+.||.+++|+....... ..+ ..|...|.+++|+|++++|+
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~------------------------~~~----~~h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDGKFE------------------------KTI----SGHKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEE------------------------EEE----CCCSSCEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCcccc------------------------hhh----ccCCCceEEEEEcCCCCEEE
Confidence 45666789999999999999997544310 001 14668899999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~ 161 (401)
+++ .|+.|++||+.+++.+..+ ..|...|.+++|+|++ .+|++|+.|+.|++||+++++.. .
T Consensus 82 s~~----------~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~------~ 143 (312)
T 4ery_A 82 SAS----------DDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL------K 143 (312)
T ss_dssp EEE----------TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE------E
T ss_pred EEC----------CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE------E
Confidence 999 7999999999977655433 3578899999999977 78999999999999999877643 2
Q ss_pred cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342 162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241 (401)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 241 (401)
.+..|..+|.+++| ++++.+|++++.||.|++||++.... .. .+ ...+...+.+++|+ ++++++++++.|
T Consensus 144 ~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~--~~----~~~~~~~~~~~~~~-~~~~~l~~~~~d 213 (312)
T 4ery_A 144 TLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LK--TL----IDDDNPPVSFVKFS-PNGKYILAATLD 213 (312)
T ss_dssp EECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EE--EE----CCSSCCCEEEEEEC-TTSSEEEEEETT
T ss_pred EecCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-ee--EE----eccCCCceEEEEEC-CCCCEEEEEcCC
Confidence 34689999999999 89999999999999999999975321 11 11 12356689999999 899999999999
Q ss_pred ceEEEEeCCCCCCCceeeecCCCCceeee--ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEE
Q psy17342 242 GNVYSACRHGNKAGNVECYEGHEGPVVGL--SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319 (401)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~ 319 (401)
+.|++||++. .+.+..+.+|...+.++ .+.+.. +.+|++|+.|+.|++||+++++.+..+.+|...|.+++
T Consensus 214 ~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 214 NTLKLWDYSK--GKCLKTYTGHKNEKYCIFANFSVTG-----GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286 (312)
T ss_dssp TEEEEEETTT--TEEEEEECSSCCSSSCCCEEEECSS-----SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CeEEEEECCC--CcEEEEEEecCCceEEEEEEEEeCC-----CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence 9999999984 34677788887665443 333332 68999999999999999999999999999999999999
Q ss_pred ECCCCCcEEEEEe--cCCEEEEEeCC
Q psy17342 320 WSPINPALFATVE--VAGRVDLWNLN 343 (401)
Q Consensus 320 ~~~~~~~~l~~~~--~d~~i~iwd~~ 343 (401)
|+|+++ ++++++ .|+.|++|+..
T Consensus 287 ~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 287 CHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred ecCcCC-ceEEEEccCCccEEEecCC
Confidence 999997 788876 69999999864
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.4e-40 Score=292.05 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=227.2
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+.++++|+ ++.+++|+...+..+..+..+.. ....... ........+...|.+++|+|++++|+
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~-----~~~~~~~-----~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA-----ANKDPEN-----LNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc-----ccccccc-----ccccccCCCceeEEEEEECCCCCEEE
Confidence 3555678889887 78999999876653222211100 0000000 00001112335699999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~ 161 (401)
+++ .|+.|+|||+.+++.... ...|...|.+++|+|++ .+|++|+.|++|++||+++++....
T Consensus 140 s~~----------~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~----- 202 (393)
T 1erj_A 140 TGA----------EDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLT----- 202 (393)
T ss_dssp EEE----------TTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----
T ss_pred EEc----------CCCeEEEEECCCCcEEEE-EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEE-----
Confidence 999 799999999987654432 33578899999999977 7889999999999999988764321
Q ss_pred cccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342 162 SVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE 240 (401)
Q Consensus 162 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 240 (401)
..+...+.+++| +| ++.+|++++.|+.|++||++... .............+|...|.+++|+ +++.+|++|+.
T Consensus 203 --~~~~~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~ 276 (393)
T 1erj_A 203 --LSIEDGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSL 276 (393)
T ss_dssp --EECSSCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred --EEcCCCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeC
Confidence 245678999999 77 88999999999999999987632 1111111111124588899999999 89999999999
Q ss_pred CceEEEEeCCCCC----------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342 241 DGNVYSACRHGNK----------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE 310 (401)
Q Consensus 241 d~~i~~~~~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 310 (401)
|+.|++||++... ..+...+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~sgs~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------CCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 9999999987422 2245567889999999999998 78999999999999999999999999999
Q ss_pred cCCceEEEEECC------CCCcEEEEEecCCEEEEEeCCCC
Q psy17342 311 FRDYVMDVQWSP------INPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 311 ~~~~v~~v~~~~------~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
|...|.+++|+| ++. +|++|+.||.|+||++...
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence 999999999987 454 8999999999999998653
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-39 Score=282.62 Aligned_cols=291 Identities=12% Similarity=0.186 Sum_probs=238.1
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v 143 (401)
+.++|.+++|+|+|+.++++. .++.+.+|..... ........|...|++++|+|++ .++++++ ||.|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i 74 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPF----------PPDALIGPGIPRH-ARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCV 74 (337)
T ss_dssp EEEECCEEEECSSSCEEECCC----------CTTSSSSTTCCSE-EEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEE
T ss_pred cCCceeEEEECCCCCEEEeec----------CCCcEeccccCCc-cccceeccCCCceEEEEEecCC-cEEEEcC-CCeE
Confidence 347899999999999888777 4555555554422 2223345689999999999977 7888887 9999
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
++|++.+......... .....|...|.+++| +|++.+|++++.|+.|++||++... ...... ...|...+.
T Consensus 75 ~iw~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~-----~~~~~~~i~ 145 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQ-LDCLNRDNYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPT-PRIKAE-----LTSSAPACY 145 (337)
T ss_dssp EEEETTSTTCCSCSEE-EECSCTTSBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC---EEEEE-----EECSSSCEE
T ss_pred EEEECCCCCceeeeec-ccccCCCCcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCC-cceeee-----cccCCCceE
Confidence 9999987654322111 122378999999999 8999999999999999999998632 112222 234778899
Q ss_pred EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 303 (401)
+++|+ ++++++++++.|+.|++||++.. +.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++
T Consensus 146 ~~~~~-~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 146 ALAIS-PDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISND------GTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp EEEEC-TTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEC-CCCCEEEEEeCCCcEEEEeCCCC--ceeeeeecccCceEEEEECCC------CCEEEEEecCCcEEEEECCCCc
Confidence 99999 79999999999999999999843 467788899999999999998 7899999999999999999988
Q ss_pred ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342 304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT 383 (401)
Q Consensus 304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~ 383 (401)
.+..+. +...+.+++|+|+++ ++++++.|+.|++||+++.+.. ....|...|.+++|+|++++|++++.||.|+
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeeec-CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCeE----EEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence 887775 578899999999997 7899999999999999886532 2346788999999999999999999999999
Q ss_pred EEEeccCc
Q psy17342 384 MFDVGEVG 391 (401)
Q Consensus 384 iw~~~~~~ 391 (401)
+|++.+++
T Consensus 291 ~~~~~~~~ 298 (337)
T 1gxr_A 291 AWRTPYGA 298 (337)
T ss_dssp EEETTTCC
T ss_pred EEECCCCe
Confidence 99999875
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-41 Score=298.31 Aligned_cols=291 Identities=10% Similarity=0.061 Sum_probs=222.2
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG 141 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 141 (401)
+.++|.+++|+|++++|++++ .|+.|+|||+.++ +....+ ..|...|.+++|+|++ ++|++|+.|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~-~~l~s~s~d~ 77 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTT----------ATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKS-NRIVTCSQDR 77 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCC----------SSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTT-CCEEEEETTS
T ss_pred CCCcEEEEEECCCCCEEEEec----------CCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCC-CEEEEEeCCC
Confidence 347899999999999999988 7999999999976 333333 3578999999999987 7899999999
Q ss_pred eEEEEECCCCC-CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC-Cc
Q psy17342 142 QIVLWDTRVQK-KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT-KN 219 (401)
Q Consensus 142 ~v~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~ 219 (401)
.|++||+.++. .... ..+..|...|.+++| +|++.+|++++.|+.|++||++.......... ... |.
T Consensus 78 ~v~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~h~ 146 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQT----LVLLRLNRAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWWVSKH-----LKRPLR 146 (377)
T ss_dssp SEEEC------CCCCE----EECCCCSSCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CCCCEE-----ECSSCC
T ss_pred eEEEEEcCCCCceeee----eEecccCCceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccceeeeE-----eecccC
Confidence 99999998876 2211 335689999999999 89999999999999999999986332111111 223 78
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC----------------CCceeeecCCCCceeeeecCccCCCCCCCc
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK----------------AGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 283 (401)
..|.+++|+ +++++|++++.|+.|++||+.... ..++..+ +|...|.+++|+|+ ++
T Consensus 147 ~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~------~~ 218 (377)
T 3dwl_C 147 STILSLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS------GN 218 (377)
T ss_dssp SCEEEEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT------SS
T ss_pred CCeEEEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC------CC
Confidence 899999999 799999999999999999985221 2244455 89999999999998 79
Q ss_pred EEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--C---------
Q psy17342 284 LYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--V--------- 348 (401)
Q Consensus 284 ~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~--------- 348 (401)
+|++++.|+.|++||+++++. +..+..|...|.+++|+|+++ +|++++.++.+ +|+...... .
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSK 296 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccc
Confidence 999999999999999999888 888999999999999999996 78888766655 776652110 0
Q ss_pred -------------------------cceE-------------EeecCCCCeEEEEecCCC-c---EEEEEecCCcEEEEE
Q psy17342 349 -------------------------PATS-------------AIVEGAPALSRVTWTPNG-T---QLCVGDEKGAITMFD 386 (401)
Q Consensus 349 -------------------------~~~~-------------~~~~~~~~v~~~~~s~~g-~---~l~~~~~dg~v~iw~ 386 (401)
..+. ....|...|+++++.+.. . .|++++.||.|++||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp CCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0000 011277889999976653 3 699999999999998
Q ss_pred e
Q psy17342 387 V 387 (401)
Q Consensus 387 ~ 387 (401)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=296.04 Aligned_cols=302 Identities=15% Similarity=0.267 Sum_probs=229.6
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC----------CceEEEecC------------CC
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT----------TPEFEFFCQ------------SP 120 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----------~~~~~~~~~------------~~ 120 (401)
.+.+.|.+++|+|+|++|++|+ .||.|+|||+.+++. .......|. ..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGD----------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEE----------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEc----------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 4668999999999999999999 799999999987552 111223466 88
Q ss_pred eeEEEEeCCCC-ceEEEEecCCeEEEEECCCCCCCce----------------------------------eeccccccC
Q psy17342 121 VLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQKKTPV----------------------------------HRTPLSVMA 165 (401)
Q Consensus 121 v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~~~~~----------------------------------~~~~~~~~~ 165 (401)
|++++|+|++. .+|++++.|+.|++|++........ ........+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 99999999764 5888889999999999976432100 000011357
Q ss_pred CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCC-CeEEEEcCCceE
Q psy17342 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV-NNFVVGCEDGNV 244 (401)
Q Consensus 166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i 244 (401)
|...|.+++| +|++.+|+++ .|+.|++||++..................|...|.+++|+ |++ .+|++|+.||.|
T Consensus 176 h~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISI--NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEE--CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCE
T ss_pred CCcceEEEEE--cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeE
Confidence 9999999999 8999999998 7999999999842322222211111134588899999999 676 999999999999
Q ss_pred EEEeCCCCCC--CceeeecCCCC------------ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEe
Q psy17342 245 YSACRHGNKA--GNVECYEGHEG------------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFN 309 (401)
Q Consensus 245 ~~~~~~~~~~--~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 309 (401)
++||++.... .....+.+|.. .|.+++|+|+ +.+|++++. +.|++||+++ ++++..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------GRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------SSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC------CCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 9999985432 11567777776 8999999998 799999998 9999999997 88999998
Q ss_pred ecCCc---------------eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE---------------------
Q psy17342 310 EFRDY---------------VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA--------------------- 353 (401)
Q Consensus 310 ~~~~~---------------v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------- 353 (401)
.|... +..++|+|+++ +|++++.||.|++||+.+++.+. +..
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSC
T ss_pred ccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCC
Confidence 87642 33499999997 78999999999999998875431 110
Q ss_pred ---------eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342 354 ---------IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 354 ---------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~ 388 (401)
.......|..++|+|++++||+++.++ +++|.-+
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 012345688999999999999999886 8888643
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-39 Score=290.75 Aligned_cols=306 Identities=18% Similarity=0.266 Sum_probs=252.3
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
++++++|+.||.+++||......+.. ...|...|.+++|+ +..+++++
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------~~~h~~~v~~~~~~--~~~l~s~~-- 176 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRT----------------------------LVGHTGGVWSSQMR--DNIIISGS-- 176 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEE----------------------------CCCCSSCEEEEEEE--TTEEEEEE--
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEE----------------------------EcCCCCCEEEEEec--CCEEEEEe--
Confidence 67899999999999999865541100 01467889999998 45888888
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.|+.|++||+.+++....+ ..|...|.+++|++ ..+++|+.||.|++||+.+++.. ..+.+|
T Consensus 177 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~------~~~~~~ 238 (445)
T 2ovr_B 177 --------TDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL------HVLMGH 238 (445)
T ss_dssp --------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE------EEEECC
T ss_pred --------CCCeEEEEECCcCcEEEEE-CCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE------EEEcCC
Confidence 7999999999987655433 35788999999964 57999999999999999887643 234689
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
...|.+++| ++..+++++.||.|++||++... .... ..+|...|.+++| ++..+++++.|+.|++
T Consensus 239 ~~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~---~~~~-----~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 239 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETET---CLHT-----LQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303 (445)
T ss_dssp SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTE---EEEE-----ECCCSSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred cccEEEEEE----CCCEEEEEcCCCEEEEEECCCCc---EeEE-----ecCCCCceEEEEE---CCCEEEEEeCCCeEEE
Confidence 999999998 67899999999999999997521 1222 2347889999998 5789999999999999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCC
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPI 323 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~ 323 (401)
||++. .+.+..+.+|...+.++.+. ++++++++.|+.|++||+++++++..+.. |...|.+++|++
T Consensus 304 ~d~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~- 372 (445)
T 2ovr_B 304 WDVET--GNCIHTLTGHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 372 (445)
T ss_dssp EETTT--CCEEEEECCCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-
T ss_pred EECCC--CCEEEEEcCCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-
Confidence 99984 44678889999999988875 57999999999999999999999999986 888999999974
Q ss_pred CCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCc----EEEEEeccC
Q psy17342 324 NPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGA----ITMFDVGEV 390 (401)
Q Consensus 324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~----v~iw~~~~~ 390 (401)
+ ++++++.||.|++||+.+++.+..+... ..+...|++++|+|++.+|++|+.||. |.+||+...
T Consensus 373 -~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 373 -N-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -S-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -C-EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 3 7999999999999999998766554321 245678999999999999999999998 999999764
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-39 Score=290.58 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=228.8
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
..+++++|+|++++|++++ .|+.|++||+.+++....+. ....+....|+|++ .+|++|+.||.|++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~----------~d~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKAR----------LDGHDFLFNTIIRDGSKMLK--RADYTAVDTAKLQM-RRFILGTTEGDIKV 123 (420)
T ss_dssp BCCTTCEEEEEETTEEEEE----------ETTEEEEEECCSEETTTTSC--SCCEEEEEEECSSS-CEEEEEETTSCEEE
T ss_pred ccccceeeeecCCeEEEEE----------cCCcEEEEEecccceeeEEe--cCCceEEEEEecCC-CEEEEEECCCCEEE
Confidence 4456899999999999999 69999999998765544332 22344455678866 78999999999999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
||+.++... ..+..|...|.+++| +|++.+|++++.|+.|++||++..... .. +.+|...|.++
T Consensus 124 wd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~-----~~~h~~~v~~~ 187 (420)
T 3vl1_A 124 LDSNFNLQR------EIDQAHVSEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNP---RT-----LIGHRATVTDI 187 (420)
T ss_dssp ECTTSCEEE------EETTSSSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCC---EE-----EECCSSCEEEE
T ss_pred EeCCCccee------eecccccCccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCc---eE-----EcCCCCcEEEE
Confidence 999876532 224689999999999 899999999999999999999863321 12 33488899999
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC------------------------CCceeeeecCccCCCCCC
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH------------------------EGPVVGLSSHRAQGHIDF 281 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~------------------------~~~v~~i~~~~~~~~~~~ 281 (401)
+|+ +++..|++++.|+.|++||++.. +.+..+..| ...+.+++|+|+
T Consensus 188 ~~~-~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------ 258 (420)
T 3vl1_A 188 AII-DRGRNVLSASLDGTIRLWECGTG--TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY------ 258 (420)
T ss_dssp EEE-TTTTEEEEEETTSCEEEEETTTT--EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT------
T ss_pred EEc-CCCCEEEEEcCCCcEEEeECCCC--ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC------
Confidence 999 79999999999999999999743 345555532 355666777887
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCC
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAP 359 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~ 359 (401)
+++|++++.|+.|++||+++++.+..+.. |...|.+++|+|+++.+|++++.||.|++||+++++. +..+ ...+..
T Consensus 259 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~~ 336 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--LINEGT 336 (420)
T ss_dssp TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--EESTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--hccCCC
Confidence 79999999999999999999888777754 7889999999999976899999999999999998754 3232 234667
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.+.++.+ +++++|++++.||.|++|++.+.
T Consensus 337 ~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 337 PINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp CEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 7888855 58899999999999999999874
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.2e-40 Score=333.55 Aligned_cols=356 Identities=14% Similarity=0.241 Sum_probs=277.5
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccc------cccccCCC------CCCCCCceeeeeee----ccccccc
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQD------LQFDMTGD------EKSSTKLSFCRQFF----DEKWSKN 65 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~ 65 (401)
.|..-+.++++|+.||.+++||......+..+..+ ..|....+ ......+.+|.... .....|.
T Consensus 664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 45566789999999999999999877644333221 11322211 11223344443211 1223588
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce---------------------------------
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--------------------------------- 112 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--------------------------------- 112 (401)
..|.+++|+|+++.|++++ .||.|++||+.+++....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCS----------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEE----------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred CCEEEEEEecCCCEEEEEE----------CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 9999999999999999999 799999999875432111
Q ss_pred ---------------------EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342 113 ---------------------FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF 171 (401)
Q Consensus 113 ---------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (401)
....|...|.+++|+|++ .++++|+.+|.|++|++.++... ..+.+|...|.
T Consensus 814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~ 886 (1249)
T 3sfz_A 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVH 886 (1249)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEE
T ss_pred EEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcee------eecCCCccceE
Confidence 111456789999999977 78889999999999999876543 33578999999
Q ss_pred EEEEeecCCceEEEEEeCCCcEEEeeccCCCCC-----------------------------------------------
Q psy17342 172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP----------------------------------------------- 204 (401)
Q Consensus 172 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----------------------------------------------- 204 (401)
+++| +|++..|++++.||.|++|++......
T Consensus 887 ~v~~--spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 887 GVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred EEEE--CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 9999 899999999999999999996521000
Q ss_pred --------------------ccccccc----cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee
Q psy17342 205 --------------------QETRDLQ----YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY 260 (401)
Q Consensus 205 --------------------~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 260 (401)
.....+. .....+|...|.+++|+ ++++++++++.||.|++|++.... ...+
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~---~~~~ 1040 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGD---YVFL 1040 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTE---EECC
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCc---eEEE
Confidence 0000000 00134588899999999 899999999999999999997543 3355
Q ss_pred cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340 (401)
Q Consensus 261 ~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw 340 (401)
..|...|.++.++|+ ..+++++.|+.|++||+.+++.+..+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 1041 ~~~~~~v~~~~~~~~-------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQD-------SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIW 1112 (1249)
T ss_dssp BCCSSCEEEEEECSS-------SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEE
T ss_pred ecCCCcEEEEEEcCC-------CcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence 689999999999996 5688899999999999999999999999999999999999997 78999999999999
Q ss_pred eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
|+.++.....+ ..|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus 1113 d~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1113 SFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred ECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99988766554 3678889999999999999999999999999999874
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-39 Score=330.96 Aligned_cols=330 Identities=17% Similarity=0.176 Sum_probs=265.9
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+..+++|+.||.|++||......+.. + ..|...|.+++|+|++++|+
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------------------~----~~h~~~v~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLD------------------------I----KAHEDEVLCCAFSSDDSYIA 673 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEE------------------------E----CCCSSCEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEEEE------------------------e----ccCCCCEEEEEEecCCCEEE
Confidence 4566788999999999999999876551100 0 14678999999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-CceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-PYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
+++ .|+.|++||+.+++.+..+. .|...|.+++|+|++ ..++++|+.||.|++||+.++...
T Consensus 674 s~~----------~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~------ 736 (1249)
T 3sfz_A 674 TCS----------ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR------ 736 (1249)
T ss_dssp EEE----------TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE------
T ss_pred EEe----------CCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh------
Confidence 999 79999999999877665443 578999999999963 358899999999999999887643
Q ss_pred ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc----------------------cccc-------
Q psy17342 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET----------------------RDLQ------- 211 (401)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----------------------~~~~------- 211 (401)
..+.+|.+.|.+++| +|++..+++++.||.|++||+......... ..+.
T Consensus 737 ~~~~~h~~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEECCCSSCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred heecCCCCCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 234689999999999 899999999999999999998753211000 0000
Q ss_pred ------------------cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342 212 ------------------YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 212 ------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 273 (401)
.....+|...|.+++|+ +++..+++++.++.|++|+... ...+..+.+|...|.+++|+
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTT--TEEEEEECCCSSCEEEEEEC
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCC--CceeeecCCCccceEEEEEC
Confidence 00012577889999999 8999999999999999999984 44677889999999999999
Q ss_pred ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-----------------------------eEE--------EeecCCceE
Q psy17342 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-----------------------------VHS--------FNEFRDYVM 316 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~--------~~~~~~~v~ 316 (401)
|+ +.+|++++.|+.|++||+.+... +.. ...+...+.
T Consensus 892 pd------g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 892 PD------GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp TT------SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred CC------CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 98 79999999999999999753210 011 112345789
Q ss_pred EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
+++|+|+++ ++++|+.||.|++||+.+++.... ...|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus 966 ~~~~sp~g~-~l~~g~~~g~i~i~d~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 966 CCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSS---GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEEECTTSS-EEEEEETTSCCEEEETTTTSCEEE---CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEEEcCCCC-EEEEEcCCCCEEEEEcCCCceeee---cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999997 899999999999999998765433 24678899999999999999999999999999998874
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-39 Score=286.19 Aligned_cols=297 Identities=9% Similarity=-0.031 Sum_probs=218.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce--------EEE-ecCCCeeEEEEeCCCCceEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--------FEF-FCQSPVLSCCFAKFNPYLILG 136 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--------~~~-~~~~~v~~~~~~~~~~~~l~~ 136 (401)
-+|++++|+|+++.|++|+-+.. ..+-++.|++|++........ ..+ .+...|.++++.+ ..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEE
Confidence 57999999999999999882110 001255799999976443221 112 2456788888764 34555
Q ss_pred E-----------ecCCeEEEEECCCCCCCceee---ccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccC
Q psy17342 137 G-----------TYSGQIVLWDTRVQKKTPVHR---TPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEM 200 (401)
Q Consensus 137 g-----------~~dg~v~iw~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~ 200 (401)
| +.|+.+++|++.......... .......+...+.+++| +|+|.++++++ .|++|++||+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCC
Confidence 4 457789999987654321111 11122345667999999 99999987554 689999999975
Q ss_pred CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342 201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280 (401)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 280 (401)
.. ....+ .|...|.+++|+ |+++++++++.++.+.+|... ..........+|...|.+++|+|+
T Consensus 167 ~~---~~~~~------~~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fspd----- 230 (365)
T 4h5i_A 167 LT---EKFEI------ETRGEVKDLHFS-TDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSLSKINFIAD----- 230 (365)
T ss_dssp TE---EEEEE------ECSSCCCEEEEC-TTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEEEEEEEEET-----
T ss_pred Cc---EEEEe------CCCCceEEEEEc-cCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCEEEEEEcCC-----
Confidence 22 22222 256689999999 899999999876655554443 322223345678999999999999
Q ss_pred CCcEEEEEeCCC----eEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342 281 FSHLYLTSSYDW----SVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 281 ~~~~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 352 (401)
+.++++++.|+ .+++|++..... ...+..|...|++++|+|+|+ +||+|+.|+.|+|||+++++.+..+
T Consensus 231 -g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~- 307 (365)
T 4h5i_A 231 -DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIF- 307 (365)
T ss_dssp -TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred -CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEe-
Confidence 79999998887 688999876543 345677899999999999997 8999999999999999987644332
Q ss_pred EeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 353 AIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 353 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
..+|...|++++|+|||++||+|+.|++|+||++...
T Consensus 308 -~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 -KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 2468899999999999999999999999999999764
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-38 Score=270.92 Aligned_cols=256 Identities=16% Similarity=0.195 Sum_probs=203.0
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-CceEEEecCCCeeEEEEeCC-CCceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPEFEFFCQSPVLSCCFAKF-NPYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~d 140 (401)
.|.+.|.+++|+|+|++|++++ .|++|+|||+..... .......|.++|.+++|+|+ ...+|++|+.|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s----------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE----------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcCceEEEEECCCCCEEEEEe----------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 5789999999999999999999 799999999975322 22233458999999999864 24799999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
++|++||++++..... ..+..|...|.+++| +|+ +.+|++++.|+.|++||++...... ... ..+|
T Consensus 77 ~~v~iWd~~~~~~~~~----~~~~~h~~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~-----~~~h 144 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTS-PII-----IDAH 144 (297)
T ss_dssp TEEEEEEBSSSCBCCC----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEE-----EECC
T ss_pred CEEEEEEcCCCceEEE----EEeecCCCceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCcee-eee-----eecc
Confidence 9999999987643222 234679999999999 665 7899999999999999997532211 111 3458
Q ss_pred ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342 219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284 (401)
Q Consensus 219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 284 (401)
...|.+++|+|. ++++|++|+.|+.|++||++.... .....+.+|...|.+++|+|+.. .+.+
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---~~~~ 221 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---LRSY 221 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS---SSEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC---CceE
Confidence 889999999942 257899999999999999875331 14567889999999999999720 0379
Q ss_pred EEEEeCCCeEEEEEeeCCCc--e-EEE--eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 285 YLTSSYDWSVKLWNIKENKP--V-HSF--NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 285 l~s~~~d~~i~iwd~~~~~~--~-~~~--~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
|++++.|++|+|||+++... . ..+ ..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence 99999999999999987431 1 223 45788999999999997 789999999999999864
No 64
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-38 Score=274.70 Aligned_cols=255 Identities=18% Similarity=0.211 Sum_probs=212.6
Q ss_pred EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342 115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC 194 (401)
Q Consensus 115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 194 (401)
.+|.+.|++++|+|+++++|++|+.|++|++|++....... ......+.+|...|.+++| ++++.+|++++.|++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-~~~~~~~~~h~~~v~~~~~--s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-GVPVRSFKGHSHIVQDCTL--TADGAYALSASWDKTLR 90 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-EEEEEEEECCSSCEEEEEE--CTTSSEEEEEETTSEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-cccceEEeCCcccEEEEEE--CCCCCEEEEEeCCCEEE
Confidence 35899999999999777899999999999999997543211 1111346799999999999 99999999999999999
Q ss_pred EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342 195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 274 (401)
+||+.+.. .... +.+|...|.+++|+ +++.++++|+.|+.|++||++. ..+..+.+|...|.++.+.|
T Consensus 91 ~wd~~~~~---~~~~-----~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 91 LWDVATGE---TYQR-----FVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EEETTTTE---EEEE-----EECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECC
T ss_pred EEECCCCC---eeEE-----EccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEcc
Confidence 99997632 1122 34588999999999 8999999999999999999964 35778889999999999998
Q ss_pred cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI 354 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 354 (401)
.......+..+++++.|+.|++||+++.+....+.+|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~--- 234 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL--- 234 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEE---
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---
Confidence 632111145899999999999999999999999999999999999999997 8999999999999999987654433
Q ss_pred ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.+...|.+++|+|++.+|++++.++ +++|++..+
T Consensus 235 -~~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~ 268 (319)
T 3frx_A 235 -SAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ 268 (319)
T ss_dssp -ECCSCEEEEEECSSSSEEEEEETTE-EEEEEETTE
T ss_pred -cCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcC
Confidence 3467899999999999999888665 999999875
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-38 Score=289.70 Aligned_cols=289 Identities=13% Similarity=0.209 Sum_probs=235.8
Q ss_pred ccccc-eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342 63 SKNRN-VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG 141 (401)
Q Consensus 63 ~~~~~-v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 141 (401)
.|... +.++.| ++++|++++ .||.|++||+.+++....+ ..|.+.|.+++|+|++ ++++|+.||
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs----------~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~~--~l~s~s~dg 183 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGA----------DDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGG--ILVSGSTDR 183 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSTT--EEEEEETTS
T ss_pred CCCCCcEEEEEE--CCCEEEEEc----------CCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCCC--EEEEEeCCC
Confidence 35555 566666 456899999 8999999999987655433 3578999999999865 899999999
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc-----------
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL----------- 210 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------- 210 (401)
.|++||+++++.. ..+.+|...|.+++|.+.+++.++++++.||.|++||++...........
T Consensus 184 ~i~vwd~~~~~~~------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 184 TVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp CEEEEETTTTEEE------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred CEEEEECCCCcEE------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 9999999887643 23568999999999966688899999999999999999864322110000
Q ss_pred ----ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342 211 ----QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 211 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
......+|...+.++. ++++++++|+.|+.|++||+.. .+.+..+.+|...|.+++|+|+ +++++
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~------~~~l~ 326 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHE------RKRCI 326 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETT------TTEEE
T ss_pred CCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCEEEEEEcCC------CCEEE
Confidence 0001345777788774 5689999999999999999984 4467888999999999999998 79999
Q ss_pred EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW 366 (401)
Q Consensus 287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 366 (401)
+|+.|+.|++||+++++++.++.+|...|.+++|++ . ++++++.||.|++||+.+...... ..+...+..++|
T Consensus 327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~----~~~~~~~~~~~~ 399 (464)
T 3v7d_B 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS----YHHTNLSAITTF 399 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE----EECTTCCCEEEE
T ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee----ecCCCCccEEEE
Confidence 999999999999999999999999999999999984 3 799999999999999998653322 345667888999
Q ss_pred cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 367 TPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 367 s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
++++++|++|+ ||.|++||+++++
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EeCCCEEEEec-CCeEEEEECCCCc
Confidence 99999999998 8999999999984
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.2e-38 Score=275.14 Aligned_cols=286 Identities=15% Similarity=0.145 Sum_probs=231.9
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--CceEEEecCCCeeEEEEeCCCCc-eEEEEec
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFNPY-LILGGTY 139 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~l~~g~~ 139 (401)
.|.+.|.+++|+|++++|++++ .|+.|++|++.++.. .......|...|++++|+|++ . +|++|+.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 77 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTV 77 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEET
T ss_pred CCCCcEEEEEEcCCCCEEEEEc----------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcC
Confidence 5889999999999999999999 799999999987651 123345688999999999976 7 8999999
Q ss_pred CCeEEEEEC-CCCCCCceeeccccccC--CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc--ccccccc
Q psy17342 140 SGQIVLWDT-RVQKKTPVHRTPLSVMA--HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET--RDLQYNN 214 (401)
Q Consensus 140 dg~v~iw~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~~ 214 (401)
||.|++||+ .+... ..+.. |...|.+++| ++ +..|++++.|+.|++||++........ .....
T Consensus 78 dg~i~~wd~~~~~~~-------~~~~~~~~~~~v~~l~~--~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 145 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF-------QALTNNEANLGICRICK--YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-- 145 (342)
T ss_dssp TSCEEEECSSSSSSE-------EECBSCCCCSCEEEEEE--ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred CCeEEEEEeccCCce-------EeccccCCCCceEEEEe--CC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence 999999999 77653 23456 9999999999 77 899999999999999998741100000 00000
Q ss_pred ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC-CCCCceeeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCCC
Q psy17342 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG-NKAGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d~ 292 (401)
...+...|.+++|+ ++. +++++.++.|++||++. ...........|...|.+++|+| + ++++++++.|+
T Consensus 146 ~~~~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg 216 (342)
T 1yfq_A 146 NTKVKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------QEGYACSSIDG 216 (342)
T ss_dssp SSSSCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG------GCEEEEEETTS
T ss_pred EEeeCCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC------CCEEEEEecCC
Confidence 11267789999999 555 99999999999999986 43334445567889999999999 8 79999999999
Q ss_pred eEEEEEeeCC------CceEEEeecCC---------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342 293 SVKLWNIKEN------KPVHSFNEFRD---------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357 (401)
Q Consensus 293 ~i~iwd~~~~------~~~~~~~~~~~---------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 357 (401)
.|++|+++.. +....+..|.. .|.+++|+|+++ +|++++.||.|++||+.+++.+..+ ..|
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~---~~~ 292 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNF---AKF 292 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC---CCC
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhh---hcc
Confidence 9999999887 88888988865 999999999997 7899999999999999987654433 355
Q ss_pred -CCCeEEEEecCCCcEEEEEecCCc-EEEEE
Q psy17342 358 -APALSRVTWTPNGTQLCVGDEKGA-ITMFD 386 (401)
Q Consensus 358 -~~~v~~~~~s~~g~~l~~~~~dg~-v~iw~ 386 (401)
...|++++ |++++|++++.||. .+.|.
T Consensus 293 h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 293 NEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCceEec--CCCCeEEEEecCCccccccc
Confidence 78899999 99999999999998 44444
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=272.87 Aligned_cols=259 Identities=17% Similarity=0.204 Sum_probs=201.6
Q ss_pred EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342 115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC 194 (401)
Q Consensus 115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 194 (401)
..|..+|.+++|+|+ +|++|+.|+.|++||+..+....... +....|...|.+++| +|++.+|++++.|++|+
T Consensus 11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~--~~~~~h~~~v~~v~~--sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV--LDETAHKKAIRSVAW--RPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE--ECTTCCCSCEEEEEE--CTTSSEEEEEETTSCEE
T ss_pred ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE--EecCCccCCEEEEEE--CCCCCEEEEEeCCCcEE
Confidence 357899999999984 89999999999999998754221110 112349999999999 99999999999999999
Q ss_pred EeeccCCCCCccccc-cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC--CCCceeeecCCCCceeeee
Q psy17342 195 SWSLEMLSSPQETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN--KAGNVECYEGHEGPVVGLS 271 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~v~~i~ 271 (401)
+|+++.......... +.. +.+|...|.+++|+ |++++|++|+.|+.|++||++.. ..+++..+.+|...|.+++
T Consensus 84 iw~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAI--IEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEC-------CCCEEEEE--EC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEcccCcCccccceeEEE--EcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999864211100111 111 45689999999999 79999999999999999998532 2235677889999999999
Q ss_pred cCccCCCCCCCcEEEEEeCCCeEEEEEeeCC--CceEEEeecCCceEEEEECCC--CCcEEEEEecCCEEEEEeCCCCCC
Q psy17342 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN--KPVHSFNEFRDYVMDVQWSPI--NPALFATVEVAGRVDLWNLNLDTE 347 (401)
Q Consensus 272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~ 347 (401)
|+|+ +.+|++++.|++|++||..++ +++..+.+|...|.+++|+|+ +. +|++++.|++|++||+..+..
T Consensus 161 ~~p~------~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 161 WHPS------EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp ECSS------SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECT
T ss_pred ECCC------CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCc
Confidence 9998 799999999999999999876 678889999999999999998 54 799999999999999976432
Q ss_pred Cc----ceE-Ee-ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 348 VP----ATS-AI-VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 348 ~~----~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.. ... .. ..|...|.+++|++++ +|++++.||.|++|++.+++
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 11 111 11 1267889999999765 79999999999999998764
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-39 Score=305.04 Aligned_cols=326 Identities=12% Similarity=0.069 Sum_probs=239.6
Q ss_pred cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccccccc---ceEEEEecCC-CCCeEEEE
Q psy17342 9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR---NVTYMDWSTQ-HPELLLAS 84 (401)
Q Consensus 9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~ 84 (401)
.+++|+.||.+++||......+ ..+ ..|.. .|.+++|+|+ +++|++++
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~------------------------~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFS------------------------ASD----RTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEE------------------------EEE----CSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCccee------------------------eee----cccCCCCceEEEEEECCCCCCEEEEEe
Confidence 6999999999999996543310 001 12445 8999999999 99999999
Q ss_pred eccCCCCCCCCCcEEEEEeCcCCCCCceEEE---ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc-
Q psy17342 85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF---FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP- 160 (401)
Q Consensus 85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~- 160 (401)
.|+.|++||+.+++....+.. .|...|.+++|+ ++ .+|++++.||.|++||+.+++........
T Consensus 227 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 227 ----------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp ----------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred ----------CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 799999999987765544423 678999999999 66 78999999999999999865432211100
Q ss_pred --------------------------------------ccccCCCCcEEEEEEeec------------------------
Q psy17342 161 --------------------------------------LSVMAHTHPVFCMSVIGT------------------------ 178 (401)
Q Consensus 161 --------------------------------------~~~~~~~~~v~~~~~~~~------------------------ 178 (401)
..+.+|...|.+++| +.
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCS
T ss_pred CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccC
Confidence 112234444444333 10
Q ss_pred -------CCceEEEEEeCCCcEEEeeccCCCCCc----------------------ccccc---ccccccCCccceEEEE
Q psy17342 179 -------QNAHNLISISNDGRLCSWSLEMLSSPQ----------------------ETRDL---QYNNKQTKNLAVLSLA 226 (401)
Q Consensus 179 -------~~~~~l~s~~~dg~i~~wd~~~~~~~~----------------------~~~~~---~~~~~~~~~~~v~~~~ 226 (401)
+++..+++++.|+.+++|++....... ..... .......+...+.+++
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 224456666666666666654311000 00000 0000012456778888
Q ss_pred eccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342 227 FPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV 305 (401)
Q Consensus 227 ~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 305 (401)
|+ ++++++++. |+.|++|++....... ..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++++
T Consensus 454 ~~---~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 454 LS---QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp EC---SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEE
T ss_pred Ec---CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCC------CCEEEEcCCCCeEEEeeCCCCcce
Confidence 87 789999999 9999999997543211 567789999999999999 799999999999999999999999
Q ss_pred EEEee-cCCceEEEEECC----------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 306 HSFNE-FRDYVMDVQWSP----------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 306 ~~~~~-~~~~v~~v~~~~----------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
..+.. |...|++++|+| +++ +|++++.||.|++||+.++.. .+.....|...|++++|+|+++ |+
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~-l~ 599 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPST-LV 599 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETTE-EE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCC-EEEEEcCCCcEEEEECCCCce--echhhhcCccceEEEEEcCCCC-eE
Confidence 88888 999999999999 887 899999999999999998631 2222346788999999999999 99
Q ss_pred EEecCCcEEEEEecc
Q psy17342 375 VGDEKGAITMFDVGE 389 (401)
Q Consensus 375 ~~~~dg~v~iw~~~~ 389 (401)
+++.||.|++|++..
T Consensus 600 s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 600 SSGADACIKRWNVVL 614 (615)
T ss_dssp EEETTSCEEEEEEC-
T ss_pred EecCCceEEEEeeec
Confidence 999999999999975
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.4e-38 Score=284.00 Aligned_cols=311 Identities=20% Similarity=0.306 Sum_probs=240.0
Q ss_pred cceEEEEecCCC----------CCeEEEEeccCCCCCCCCCcEEEEEeCc--------------------------CCCC
Q psy17342 66 RNVTYMDWSTQH----------PELLLASYHRNKEAPNEPDGVCLIWNTK--------------------------FKKT 109 (401)
Q Consensus 66 ~~v~~~~~~~~~----------~~l~~~~~~~~~~~~~~~d~~v~iwd~~--------------------------~~~~ 109 (401)
-+..++.|.|+. .++++|++.. +..+.|.++++. +++.
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~------~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 119 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS------DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKI 119 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCS------SSCEEEEEEEEEEC--------------------------CE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCC------CCCCEEEEEEEECCCCccccccccccccccccccccCCCCce
Confidence 456788888865 3466666421 246677777643 1112
Q ss_pred CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce----eeccccccCCCCcEEEEEEeecCCce-EE
Q psy17342 110 TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV----HRTPLSVMAHTHPVFCMSVIGTQNAH-NL 184 (401)
Q Consensus 110 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~-~l 184 (401)
.......|.+.|++++|+|+++.+|++++.+|.|++|++......+. ......+.+|...|.+++| ++++. +|
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l 197 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW--NPNLNGYL 197 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE--CTTSTTEE
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe--CCCCCCeE
Confidence 22344668999999999997668999999999999999986311110 1112345789999999999 88887 99
Q ss_pred EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-CCceeeecCC
Q psy17342 185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-AGNVECYEGH 263 (401)
Q Consensus 185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~ 263 (401)
++++.||.|++|++.............. ....|...|.+++|+|.++..|++++.|+.|++||++... ...+..+..|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKN-IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSE-EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccce-eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999999986322211111110 1345888999999995588899999999999999998542 2456677889
Q ss_pred CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342 (401)
Q Consensus 264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~ 342 (401)
...|++++|+|.. ..+|++|+.|+.|++||+++ .+++..+..|...|.+++|+|+++.+|++++.|+.|+|||+
T Consensus 277 ~~~v~~i~~~p~~-----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 277 TAEVNCLSFNPYS-----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp SSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CCCeEEEEeCCCC-----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999984 35899999999999999998 67889999999999999999999778999999999999999
Q ss_pred CCCCCC-----------cceEEeecCCCCeEEEEecCCCc-EEEEEecCCcEEEEEeccC
Q psy17342 343 NLDTEV-----------PATSAIVEGAPALSRVTWTPNGT-QLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 343 ~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~ 390 (401)
...... ..+....+|...|++++|+|+++ +|++++.||.|++|++.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 873321 22333345677899999999999 8999999999999999765
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=272.54 Aligned_cols=283 Identities=18% Similarity=0.269 Sum_probs=227.7
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
.++|+||+++ .|++|. |++|+|||+++++.+..+..+ |...|++++|+|++ ++|++|+.||.|++|
T Consensus 28 ~~~l~WS~~~-~lAvg~-----------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLW 94 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred ceEEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEe
Confidence 4679999986 555554 999999999998877766554 67789999999977 799999999999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (401)
++++++.. ..+.+|...+.++.+ ++..+++++.++.+++|+......... . ..+|...+..+.
T Consensus 95 ~~~~~~~~------~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~ 157 (318)
T 4ggc_A 95 DVQQQKRL------RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA--T-----LSGHSQEVCGLR 157 (318)
T ss_dssp ETTTTEEE------EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred ecCCceeE------EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE--E-----EcCccCceEEEE
Confidence 99987654 234689988888766 567899999999999999875322221 1 344788999999
Q ss_pred eccCCCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcEE--EEEeCCCeEEEEEeeCC
Q psy17342 227 FPQNDVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHLY--LTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~ 302 (401)
+. ++++++++++.|+.|++||++..+. ........|.+.|.++.++|.. ...+ ++++.++.|++||.+..
T Consensus 158 ~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 158 WA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp EC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS-----TTEEEEEECTTTCEEEEEETTTC
T ss_pred Ec-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC-----CcEEEEEecCCCCEEEEEecccc
Confidence 99 8999999999999999999975432 2344566788999999999985 4444 45667899999999887
Q ss_pred CceEEEeecCCceEEEEECCCCCcEEEE-EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 303 KPVHSFNEFRDYVMDVQWSPINPALFAT-VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
....... +...+..+.|+|.++.++++ ++.|+.|++||+++++.+..+ .+|...|++++|+|+|++|++|+.||+
T Consensus 232 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l---~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 232 ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp CEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 7665544 57789999999999854433 347999999999988765544 478899999999999999999999999
Q ss_pred EEEEEeccC
Q psy17342 382 ITMFDVGEV 390 (401)
Q Consensus 382 v~iw~~~~~ 390 (401)
|+|||+.+.
T Consensus 308 v~iWd~~~~ 316 (318)
T 4ggc_A 308 LRLWRCFEL 316 (318)
T ss_dssp EEEECCSCC
T ss_pred EEEEECCCC
Confidence 999999764
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.2e-39 Score=277.45 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=202.2
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-EEEecCCCeeEEEEeCC-CCceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEFFCQSPVLSCCFAKF-NPYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~l~~g~~d 140 (401)
.|.+.|.+++|+|+|++|++++ .|++|+|||+.++..... ....|...|.+++|+|+ ...+|++|+.|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs----------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCS----------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEE----------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred cccCeEEEeeEcCCCCEEEEEe----------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 5789999999999999999999 799999999986543222 23358899999999863 24799999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
++|++||++++..... ..+.+|...|.+++| +|+ +.+|++++.|++|++||++.......... ..+|
T Consensus 81 ~~v~iWd~~~~~~~~~----~~~~~h~~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~-----~~~h 149 (316)
T 3bg1_A 81 RKVIIWREENGTWEKS----HEHAGHDSSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKKI-----NNAH 149 (316)
T ss_dssp SCEEEECCSSSCCCEE----EEECCCSSCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----TTSS
T ss_pred CEEEEEECCCCcceEE----EEccCCCCceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----eccc
Confidence 9999999987643222 234689999999999 666 78999999999999999975321111111 3457
Q ss_pred ccceEEEEeccCC----------------CCeEEEEcCCceEEEEeCCCCC-CCceeeecCCCCceeeeecCccCCCCCC
Q psy17342 219 NLAVLSLAFPQND----------------VNNFVVGCEDGNVYSACRHGNK-AGNVECYEGHEGPVVGLSSHRAQGHIDF 281 (401)
Q Consensus 219 ~~~v~~~~~~~~~----------------~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 281 (401)
...|.+++|+|.. +.+|++|+.|+.|++||.+... ...+..+.+|...|.+++|+|+... +
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-~- 227 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-P- 227 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-S-
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC-C-
Confidence 8889999999421 4689999999999999986432 1356678899999999999997200 0
Q ss_pred CcEEEEEeCCCeEEEEEeeCC---C-ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 282 SHLYLTSSYDWSVKLWNIKEN---K-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~---~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
+.+|++++.|++|++||+++. + ....+..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEECT
T ss_pred CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEECC
Confidence 278999999999999999762 1 2345667899999999999997 789999999999999763
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-38 Score=306.64 Aligned_cols=327 Identities=15% Similarity=0.160 Sum_probs=260.4
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|.|..-+..+++|+.+|.|++||......+ ..+ ..|...|.+++|+|++++|
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~------------------------~~~----~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEV------------------------RSI----QVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEE------------------------EEE----ECCSSCEEEEEEEGGGTEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceE------------------------EEE----ecCCCcEEEEEEeCCCCEE
Confidence 356677889999999999999997654411 011 1466889999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
++++ .||.|++||+.+++....+ ..|...|++++|+|++ .+|++|+.||.|++||+.++....
T Consensus 71 ~~~~----------~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~----- 133 (814)
T 3mkq_A 71 IVGS----------DDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE----- 133 (814)
T ss_dssp EEEE----------TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEE-----
T ss_pred EEEe----------CCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEE-----
Confidence 9999 7999999999987765444 3478999999999987 688899999999999998763211
Q ss_pred ccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEE
Q psy17342 161 LSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVG 238 (401)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 238 (401)
..+.+|...|.+++| +| ++..|++++.||.|++||+....... .+ ...+...+.+++|+| +++.+++++
T Consensus 134 ~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~~~---~~----~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNF---TL----TTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EEEECCSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSCSE---EE----ECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred EEEcCCCCcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCccee---EE----ecCCCCCEEEEEEEECCCCCEEEEE
Confidence 234689999999999 88 88899999999999999997532211 11 122447899999993 288999999
Q ss_pred cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEE
Q psy17342 239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318 (401)
Q Consensus 239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v 318 (401)
+.||.|++||... ...+..+.+|...|.+++|+|+ ++++++++.||.|++||+.+++.+..+..|...+.++
T Consensus 205 ~~dg~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 205 SDDLTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPT------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp CTTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred eCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 9999999999874 3467788899999999999998 7899999999999999999999999999999999999
Q ss_pred EECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----------------------------------------EEeecCC
Q psy17342 319 QWSPINPALFATVEVAGRVDLWNLNLDTEVPAT----------------------------------------SAIVEGA 358 (401)
Q Consensus 319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------------~~~~~~~ 358 (401)
+|+|++..++++++.++.+.+|++........+ .....+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence 999998765455556888999987654321110 0001123
Q ss_pred CCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
..+.+++|+|+|++|++++ +|.+.+|++...
T Consensus 357 ~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp SCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred cCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence 4578999999999999888 889999997643
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-37 Score=284.11 Aligned_cols=312 Identities=15% Similarity=0.180 Sum_probs=244.0
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
++.+++|+.||.|++||....+.+ ..+ ..|...|.+++|+|++ .|++++
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~------------------------~~~----~~h~~~V~~l~~~~~~-~l~s~s-- 180 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFL------------------------LQL----SGHDGGVWALKYAHGG-ILVSGS-- 180 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEE------------------------EEE----CCCSSCEEEEEECSTT-EEEEEE--
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE------------------------EEE----eCCCcCEEEEEEcCCC-EEEEEe--
Confidence 568999999999999997654411 001 1477899999999988 888888
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEecCCeEEEEECCCCCCCceeec------
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGTYSGQIVLWDTRVQKKTPVHRT------ 159 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~------ 159 (401)
.|++|++||+++++....+ ..|...|.+++|++. +..++++|+.||.|++||+.+.........
T Consensus 181 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 181 --------TDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp --------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred --------CCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 7999999999977654433 347899999999952 337899999999999999987654321100
Q ss_pred -----------cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342 160 -----------PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP 228 (401)
Q Consensus 160 -----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (401)
.....+|...|.++. +++.++++++.||.|++||++.. ..... ..+|...|.+++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~---~~~~~-----~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQM---KCLYI-----LSGHTDRIYSTIYD 319 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTT---EEEEE-----ECCCSSCEEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCC---cEEEE-----ecCCCCCEEEEEEc
Confidence 113467888888875 47889999999999999999752 22222 33488899999999
Q ss_pred cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE
Q psy17342 229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF 308 (401)
Q Consensus 229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 308 (401)
++++.+++|+.|+.|++||++. .+++..+.+|...|.++.++ +.++++++.|+.|++||+++++.....
T Consensus 320 -~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--------~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 320 -HERKRCISASMDTTIRIWDLEN--GELMYTLQGHTALVGLLRLS--------DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp -TTTTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -CCCCEEEEEeCCCcEEEEECCC--CcEEEEEeCCCCcEEEEEEc--------CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 7999999999999999999974 44788899999999999997 369999999999999999987766555
Q ss_pred eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 309 ~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
. +...+..++|+|++. ++++++ ||.|++||+++++.+... ...+...|++++|+ +..++++++.||.+.+|-+
T Consensus 389 ~-~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~--~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 389 H-HTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp E-CTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESC--TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred c-CCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehh--hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 4 567788899999997 788887 999999999998765432 24567889999997 4455666677776655543
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.6e-37 Score=271.07 Aligned_cols=314 Identities=13% Similarity=0.129 Sum_probs=218.0
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE---EEecCCCeeEEEEeCC-CCceEEEEe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF---EFFCQSPVLSCCFAKF-NPYLILGGT 138 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~~l~~g~ 138 (401)
+|.+.|++++|+|++++|++++ .|+.|++||+.++...... ...|...|++++|+|. +..+|++|+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCS----------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE----------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEee----------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 5789999999999999999999 7999999999865433222 2347899999999994 237999999
Q ss_pred cCCeEEEEECCCCCCCce---eeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCcccccccc-
Q psy17342 139 YSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQY- 212 (401)
Q Consensus 139 ~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~- 212 (401)
.||.|++||++.+..... ......+..|...|.+++| +|+ +.+|++++.||.|++||++...... ......
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~ 155 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF--APAHLGLKLACLGNDGILRLYDALEPSDLR-SWTLTSE 155 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSSTTCTT-CCEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE--cCCCCCcEEEEecCCCcEEEecCCChHHhc-ccccccc
Confidence 999999999987643210 0112345689999999999 788 9999999999999999998643222 111100
Q ss_pred -----ccccCCccceEEEEeccC--CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCC---
Q psy17342 213 -----NNKQTKNLAVLSLAFPQN--DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS--- 282 (401)
Q Consensus 213 -----~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~--- 282 (401)
.....+...+.+++|+|. ++..+++++.++.+.+|+........+..+.+|...|++++|+|+ +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~------~~~~ 229 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS------IGRW 229 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC------SSCS
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC------CCCc
Confidence 012247788999999943 389999999999998888776554457778899999999999998 5
Q ss_pred -cEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe----cCCEEEEEeCCCCCCCcceEEeecC
Q psy17342 283 -HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE----VAGRVDLWNLNLDTEVPATSAIVEG 357 (401)
Q Consensus 283 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~ 357 (401)
++|++++.|+.|++||++.+........+.........++... .++.+. ....+.+|+....+ .+.....|
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h 305 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD-MDAQGRSDSNTEEKAELQSNLQVE---LLSEHDDH 305 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEE---EEEEECTT
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc-cccccccccccceeeeeccccccc---EEEEEecc
Confidence 7999999999999999998766555444444444444555443 333332 22334444433322 23333467
Q ss_pred CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC-ccceeeeee
Q psy17342 358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV-GIACLKFIT 399 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~-~~~~l~~~~ 399 (401)
...|++++|+|++++|++++.||.|++|++.++ .++++..+.
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~ 348 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehc
Confidence 889999999999999999999999999999986 345555554
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=276.77 Aligned_cols=290 Identities=12% Similarity=0.135 Sum_probs=228.4
Q ss_pred ccccceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE------------ecCCCeeEEEEeCC
Q psy17342 63 SKNRNVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF------------FCQSPVLSCCFAKF 129 (401)
Q Consensus 63 ~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------------~~~~~v~~~~~~~~ 129 (401)
.|.+.|.+++|+| ++++|++++ .||.|++||+.++........ .|...|.+++|+|+
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGG----------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEE----------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred ccCCcEEEEEEecCCCCEEEEEc----------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 4778999999999 999999999 799999999998776665542 37889999999996
Q ss_pred CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC---CceEEEEEeCCCcEEEeeccCCCCCcc
Q psy17342 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ---NAHNLISISNDGRLCSWSLEMLSSPQE 206 (401)
Q Consensus 130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~ 206 (401)
+..+|++++.||.|++||+.+.+.... ..+...+.++.+ .+ ++.++++++.|+.|++||++.... .
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~- 179 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADV-------FNFEETVYSHHM--SPVSTKHCLVAVGTRGPKVQLCDLKSGSC-S- 179 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEE-------EECSSCEEEEEE--CSSCSSCCEEEEEESSSSEEEEESSSSCC-C-
T ss_pred CCcEEEEEeCCCeEEEeeCCCCcccee-------ccCCCceeeeEe--ecCCCCCcEEEEEcCCCeEEEEeCCCcce-e-
Confidence 668999999999999999998764322 347788999998 55 455999999999999999986322 1
Q ss_pred ccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceee---------------ecCCCCceeee
Q psy17342 207 TRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVEC---------------YEGHEGPVVGL 270 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~---------------~~~~~~~v~~i 270 (401)
.. ...|...|.+++|+ +++. ++++++.||.|++||++.... .+.. +.+|...|.++
T Consensus 180 -~~-----~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 180 -HI-----LQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp -EE-----ECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred -ee-----ecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEE
Confidence 12 33478899999999 6666 589999999999999975432 2222 25789999999
Q ss_pred ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+|+|+ +++|++++.|+.|++||+++++....+..+. ..+. +.+.......++.++.|+.|++||+.++
T Consensus 252 ~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 324 (408)
T 4a11_B 252 CFTSD------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK-FTVSCGCSSEFVFVPYGSTIAVYTVYSG 324 (408)
T ss_dssp EECTT------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCC-CEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred EEcCC------CCEEEEecCCCeEEEEECCCCccceeccccccccccccce-eEEecCCCceEEEEecCCEEEEEECcCC
Confidence 99998 7999999999999999999887655443321 1111 2222222224667778999999999987
Q ss_pred CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
+.+..+ ..|...|++++|+|++++|++++.||.|++|++.+++
T Consensus 325 ~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 325 EQITML---KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cceeee---ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 755443 4678899999999999999999999999999999874
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-37 Score=304.24 Aligned_cols=289 Identities=18% Similarity=0.235 Sum_probs=241.4
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|.+.|.+++|+|++++|++++ .+|.|+|||+.+++....+. .|..+|.+++|+|++ .+|++|+.||.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~----------~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~ 78 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTL----------YSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARK-NWIIVGSDDFR 78 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred cCCCceEEEEECCCCCEEEEEe----------CCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCC-CEEEEEeCCCe
Confidence 4678999999999999999999 79999999998876655443 578999999999987 78999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||+.+++.. ..+.+|.+.|.+++| +|++.+|++++.||.|++||++....... . ..+|...|
T Consensus 79 i~vw~~~~~~~~------~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~-----~~~~~~~v 143 (814)
T 3mkq_A 79 IRVFNYNTGEKV------VDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ--T-----FEGHEHFV 143 (814)
T ss_dssp EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEE--E-----EECCSSCE
T ss_pred EEEEECCCCcEE------EEEecCCCCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEE--E-----EcCCCCcE
Confidence 999999887643 234689999999999 99999999999999999999975321111 1 33478899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-CCCceeeeecCc--cCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-HEGPVVGLSSHR--AQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
.+++|+|.++..+++++.||.|++||+.... ....+.. +...+.+++|+| + +.++++++.|+.|++||+
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPD------KPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECCSTT------CCEEEEECTTSEEEEEET
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEECCC------CCEEEEEeCCCEEEEEEC
Confidence 9999994488999999999999999997543 3444444 448999999999 5 789999999999999999
Q ss_pred eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE-EEEEec
Q psy17342 300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ-LCVGDE 378 (401)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~ 378 (401)
++++++..+..|...|.+++|+|+++ ++++++.||.|++||+.+++....+ ..+...+.+++|+|+|.. +++++.
T Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL---NVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEE---CCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---ecCCCcEEEEEEccCCCceEEEEEe
Confidence 99999999999999999999999997 8999999999999999987654433 356678999999999873 244445
Q ss_pred CCcEEEEEeccC
Q psy17342 379 KGAITMFDVGEV 390 (401)
Q Consensus 379 dg~v~iw~~~~~ 390 (401)
++.+.+|++...
T Consensus 292 ~~~~~~~~~~~~ 303 (814)
T 3mkq_A 292 DNGFTVLSLGND 303 (814)
T ss_dssp TTEEEEEECSCC
T ss_pred CCCEEEEEcCCC
Confidence 666999998765
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=276.35 Aligned_cols=290 Identities=15% Similarity=0.180 Sum_probs=226.1
Q ss_pred ccccceEEEEecCC---CCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342 63 SKNRNVTYMDWSTQ---HPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT 138 (401)
Q Consensus 63 ~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 138 (401)
.|.+.|++++|+|+ |++|++++ .|+.|++||+.+ +.........|...|++++|+|++ .+|++|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~ 105 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGS----------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTAS 105 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEE----------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEEC----------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEc
Confidence 57799999999999 58999999 799999999987 444434555689999999999976 7899999
Q ss_pred cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
.||.|++||+.+.+.. ....|...|.+++|.+++++.+|++++.||.|++||++... ...... .
T Consensus 106 ~dg~v~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~--------~ 169 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAI-------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQ--------L 169 (368)
T ss_dssp TTSEEEEEETTTTEEE-------EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEE--------C
T ss_pred CCCcEEEEEcCCCCce-------eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEe--------c
Confidence 9999999999887642 23579999999999778899999999999999999998632 222221 2
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
...+.++.+. ...+++++.++.+++|+++............+...+.++.+.+.... ....+++++.|+.|++||
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 170 PERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--KPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp SSCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--CEEEEEEEETTSEEEEEE
T ss_pred CCCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--CCCeEEEecCCCcEEEEe
Confidence 2356677766 35888999999999999985443222222234445555555544200 023499999999999999
Q ss_pred eeCC---CceEEEeecCC------------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEE
Q psy17342 299 IKEN---KPVHSFNEFRD------------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR 363 (401)
Q Consensus 299 ~~~~---~~~~~~~~~~~------------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 363 (401)
++.. +.+..+..|.. .|.+++|+|+++ +|++++.||.|++||+.+++.+..+ ..|...|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 320 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTS---EQLDQPISA 320 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEe---cCCCCCceE
Confidence 9887 56777887765 799999999997 7899999999999999987654433 367889999
Q ss_pred EEecCCCcEEEEEecCCcEEEEEec
Q psy17342 364 VTWTPNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 364 ~~~s~~g~~l~~~~~dg~v~iw~~~ 388 (401)
++|+|+|++|++++.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 9999999999999998865555543
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=271.53 Aligned_cols=261 Identities=17% Similarity=0.227 Sum_probs=211.1
Q ss_pred EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCC
Q psy17342 114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDG 191 (401)
Q Consensus 114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg 191 (401)
...|...|++++|+|++ .+|++|+.||.|++|++........ ..+.+|...|.+++| +++ +.+|++++.||
T Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDW--AHPKFGTILASCSYDG 79 (379)
T ss_dssp EEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTS
T ss_pred ecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceee----eEecCCCCcEEEEEe--CCCCCCCEEEEeccCC
Confidence 34679999999999987 7899999999999999974332221 235789999999999 555 89999999999
Q ss_pred cEEEeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342 192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269 (401)
Q Consensus 192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (401)
.|++||++... ...... ...|...|.+++|+ ++ +.++++++.|+.|++||++.........+.+|...|.+
T Consensus 80 ~v~iwd~~~~~-~~~~~~-----~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~ 152 (379)
T 3jrp_A 80 KVLIWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152 (379)
T ss_dssp CEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred EEEEEEcCCCc-eeEeee-----ecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence 99999998521 111222 33478899999999 67 89999999999999999987655556677889999999
Q ss_pred eecCccCCC--------CCCCcEEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCC---CCcEEEEEecC
Q psy17342 270 LSSHRAQGH--------IDFSHLYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPI---NPALFATVEVA 334 (401)
Q Consensus 270 i~~~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~---~~~~l~~~~~d 334 (401)
++|+|.... ++ +.+|++++.|+.|++||+++++. +..+..|...|.+++|+|+ +. +|++++.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d 230 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQD 230 (379)
T ss_dssp EEECCCC----------CT-TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETT
T ss_pred EEEcCccccccccccCCCC-CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCC
Confidence 999993000 00 68999999999999999988653 4567779999999999999 65 89999999
Q ss_pred CEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 335 GRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 335 ~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
|.|++||++++......... ..+...|++++|+|+|++|++++.||.|++|++..+
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999987543332222 236778999999999999999999999999999854
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.9e-37 Score=275.49 Aligned_cols=286 Identities=15% Similarity=0.194 Sum_probs=225.0
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|||.. .+.|++| .|++|+|||...++.+. .+. ...|...|++++|+|+|++|
T Consensus 111 l~wS~-~n~lAvg-ld~tV~lWd~~tg~~~~------------------------~~~--~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 111 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQ------------------------LLQ--MEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp EEECT-TSEEEEE-ETTEEEEEETTTCCEEE------------------------EEE--CCSTTCCEEEEEECTTSSEE
T ss_pred EEECC-CCEEEEE-eCCEEEEEECCCCCEEE------------------------EEE--ecCCCCcEEEEEECCCCCEE
Confidence 57864 5666665 69999999987665110 000 11456789999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
++|+ .|+.|+|||+++++.+..+ ..|...+.++++++ .+|++|+.|+.+++||........
T Consensus 163 asgs----------~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~----- 223 (420)
T 4gga_A 163 AVGT----------SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHV----- 223 (420)
T ss_dssp EEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred EEEE----------CCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceee-----
Confidence 9999 8999999999987665443 35788899988863 689999999999999988755321
Q ss_pred ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE--E
Q psy17342 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV--G 238 (401)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~ 238 (401)
..+.+|...+..+.| .+++.++++++.|+.+++|+............ . ...+...|.+++|+|.+...+++ |
T Consensus 224 ~~~~~h~~~~~~~~~--~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~--~--~~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 224 ATLSGHSQEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--T--FTQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESSCCSSCSCCSE--E--ECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred EEecccccceeeeee--cCCCCeeeeeeccccceEEeeccccccceeee--e--ecccCCceeeeeeCCCcccEEEEEee
Confidence 235789999999999 99999999999999999999976432222111 1 34478899999999666677665 4
Q ss_pred cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342 239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVHSFNEFRDYVM 316 (401)
Q Consensus 239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~ 316 (401)
+.|+.|++||+... .+...+. +...+.++.|+|. +..+++++ .|+.|+|||+.+++++.++.+|.+.|+
T Consensus 298 s~D~~I~iwd~~t~--~~~~~~~-~~~~v~~~~~~~~------~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~ 368 (420)
T 4gga_A 298 TSDRHIRIWNVCSG--ACLSAVD-AHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 368 (420)
T ss_dssp TTTCEEEEEETTTT--EEEEEEE-CSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred cCCCEEEEEeCCcc--ccceeec-cccceeeeeecCC------CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 68999999999844 3555555 4467889999998 56666654 699999999999999999999999999
Q ss_pred EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
+++|+|+|. +|++|+.|++|+|||+.......
T Consensus 369 ~l~~spdg~-~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 369 SLTMSPDGA-TVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEEECTTSS-CEEEEETTTEEEEECCSCSSCC-
T ss_pred EEEEcCCCC-EEEEEecCCeEEEEECCCCCccc
Confidence 999999997 79999999999999998655433
No 80
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.5e-37 Score=279.71 Aligned_cols=280 Identities=15% Similarity=0.272 Sum_probs=228.4
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|...|.+++| +++.|++++ .||.|++||+.+++....+ ..|...|.+++| ++ .+|++|+.||.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~----------~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~~-~~l~sg~~dg~ 194 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGL----------RDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--DE-RVIITGSSDST 194 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEE----------SSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--CS-SEEEEEETTSC
T ss_pred CCCCcEEEEEE--CCCEEEEEe----------CCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--CC-CEEEEEcCCCe
Confidence 45678999887 788999999 7999999999977655433 357889999999 34 79999999999
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||+.+++.. ..+..|...|.+++| + +..+++++.||.|++||++.......... ..+|...|
T Consensus 195 i~vwd~~~~~~~------~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v 259 (435)
T 1p22_A 195 VRVWDVNTGEML------NTLIHHCEAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAV 259 (435)
T ss_dssp EEEEESSSCCEE------EEECCCCSCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEE-----ECCCSSCE
T ss_pred EEEEECCCCcEE------EEEcCCCCcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCceeeeE-----ecCCCCcE
Confidence 999999987643 234689999999998 4 45999999999999999986332221112 34588899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 302 (401)
.++++ +++++++|+.||.|++||++. ...+..+.+|...|.++.++ +.++++|+.|+.|++||++++
T Consensus 260 ~~~~~---~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 260 NVVDF---DDKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEE---ETTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTC
T ss_pred EEEEe---CCCEEEEEeCCCeEEEEECCc--CcEEEEEcCCCCcEEEEEeC--------CCEEEEEeCCCeEEEEECCCC
Confidence 99998 478999999999999999984 45688889999999999984 579999999999999999999
Q ss_pred CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc------ceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342 303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP------ATSAIVEGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~ 376 (401)
+++..+.+|...|.+++| ++. ++++|+.||.|++||+.++.... .......|...|++++| ++++|+++
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 401 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 401 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred CEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence 999999999999999999 454 79999999999999997654211 23334577889999999 78899999
Q ss_pred ecCCcEEEEEeccCc
Q psy17342 377 DEKGAITMFDVGEVG 391 (401)
Q Consensus 377 ~~dg~v~iw~~~~~~ 391 (401)
+.||.|++||+.+..
T Consensus 402 s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 402 SHDDTILIWDFLNDP 416 (435)
T ss_dssp CSSSEEEEEC-----
T ss_pred eCCCEEEEEECCCCC
Confidence 999999999998864
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-37 Score=268.65 Aligned_cols=280 Identities=17% Similarity=0.171 Sum_probs=220.2
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
++.++||+.||+|+|||+......... ..+.+ ..|...|.+++|+|++++|++++
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~-------------------~~~~l----~~h~~~V~~~~~s~dg~~l~s~~-- 105 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGI-------------------PQRAL----RGHSHFVSDVVISSDGQFALSGS-- 105 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEE-------------------EEEEE----CCCSSCEEEEEECTTSSEEEEEE--
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccce-------------------eeEEE----eCCCCCEEEEEECCCCCEEEEEc--
Confidence 578999999999999998765421111 00111 24678999999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.|+.|++|+........ ....+...+..+.+++++ .+|++|+.|+.+++||....... .....+|
T Consensus 106 --------~d~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~~~~~ 170 (340)
T 4aow_A 106 --------WDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQDESH 170 (340)
T ss_dssp --------TTSEEEEEETTTTEEEE-EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EECSSSC
T ss_pred --------ccccceEEeecccceee-eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEEeccc
Confidence 79999999998654433 333457788999999976 78899999999999998765432 1234689
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
...+..++|.+.+....+++++.|+.|++||++... .... ..+|...|++++|+ |++++|++|+.|+.|++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~-----~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK---LKTN-----HIGHTGYLNTVTVS-PDGSLCASGGKDGQAML 241 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCEEEEEEC-TTSSEEEEEETTCEEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc---eeeE-----ecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEE
Confidence 999999999555556788999999999999997522 1222 34588899999999 89999999999999999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe---------ecCCceEE
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN---------EFRDYVMD 317 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~ 317 (401)
||++.. ..+..+. +...|.++.|+|+ ..+++++.|+.|++||++++..+..+. .|...|++
T Consensus 242 wd~~~~--~~~~~~~-~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 242 WDLNEG--KHLYTLD-GGDIINALCFSPN-------RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp EETTTT--EEEEEEE-CSSCEEEEEECSS-------SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred EEeccC--ceeeeec-CCceEEeeecCCC-------CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 999843 3556665 4568999999996 455666779999999998876665543 57889999
Q ss_pred EEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 318 VQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
++|+|+++ +|++|+.||.|+|||+++++
T Consensus 312 l~~s~dg~-~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 312 LAWSADGQ-TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEEEC--
T ss_pred EEECCCCC-EEEEEeCCCEEEEEeCCCcC
Confidence 99999997 89999999999999999875
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-37 Score=277.84 Aligned_cols=286 Identities=12% Similarity=0.142 Sum_probs=225.4
Q ss_pred ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC----C---CCe
Q psy17342 8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ----H---PEL 80 (401)
Q Consensus 8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~---~~l 80 (401)
..+++|+.||.+++|+......... ......+. .|...|.+++|+|+ + ++|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~------------------~~~~~~~~----~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENP------------------KDKSYSHF----VHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCG------------------GGGEEEEE----CCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcccccC------------------CCcceEEe----cCCCcEEEEEEecccccCCccccEE
Confidence 7899999999999999876652111 11111111 46688999999999 9 999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCC-----CceEEEec-----CCCeeEEEEe----CCCCce-EEEEecCCeEEE
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKT-----TPEFEFFC-----QSPVLSCCFA----KFNPYL-ILGGTYSGQIVL 145 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~g~~dg~v~i 145 (401)
++++ .|+.|++||+.+++. ...+ ..| ...|.+++|+ |++ .+ |++|+.||.|++
T Consensus 85 ~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 85 ATTS----------FSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYI 152 (397)
T ss_dssp EEEE----------TTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEE
T ss_pred EEEc----------CCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEE
Confidence 9999 799999999997665 3222 234 4899999999 877 56 999999999999
Q ss_pred EECCC------CCCCceeeccccc-------cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342 146 WDTRV------QKKTPVHRTPLSV-------MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212 (401)
Q Consensus 146 w~~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 212 (401)
||+.. ........ ...+ ..|...|.+++| ++++ .+++++.||.|++||++... +...+..
T Consensus 153 wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~-- 225 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSP-TLELQGTVESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLR-PLYNFES-- 225 (397)
T ss_dssp EEEESSSSHHHHTTTCCCC-EEEEEEEECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTE-EEEEEEC--
T ss_pred EeCCccccccccceeeccC-cceeeeeeccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCc-eeEEEec--
Confidence 99987 44332000 0022 458899999999 8999 99999999999999997521 1111111
Q ss_pred ccccCC---ccceEEEEeccCCCCeEEEEcCC---ceEEEEeCCCCCCCceeeecC-------------CCCceeeeecC
Q psy17342 213 NNKQTK---NLAVLSLAFPQNDVNNFVVGCED---GNVYSACRHGNKAGNVECYEG-------------HEGPVVGLSSH 273 (401)
Q Consensus 213 ~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~~ 273 (401)
...| ...|.+++|+ +++.+|++++.| +.|++||++.. +.+..+.+ |...|.+++|+
T Consensus 226 --~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 226 --QHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp --CC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred --cccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEEC
Confidence 1115 7899999999 789999999999 99999999843 46778888 99999999999
Q ss_pred ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe------ec---------------CCceEEEEECCCCC-------
Q psy17342 274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN------EF---------------RDYVMDVQWSPINP------- 325 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~v~~~~~~~------- 325 (401)
|+ +++|++++.|+.|++||+++++++..+. .| ...|.+++|+|+++
T Consensus 301 ~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 374 (397)
T 1sq9_A 301 DS------GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD 374 (397)
T ss_dssp SS------SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred CC------CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence 98 7999999999999999999999999999 77 89999999999982
Q ss_pred --cEEEEEecCCEEEEEeCCCC
Q psy17342 326 --ALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 326 --~~l~~~~~d~~i~iwd~~~~ 345 (401)
.+|++++.||.|++||+.++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC-
T ss_pred ccceEEEecCCCcEEEEEcCCC
Confidence 38999999999999999875
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=284.03 Aligned_cols=280 Identities=12% Similarity=0.100 Sum_probs=202.5
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC------CCCe
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ------HPEL 80 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l 80 (401)
+..+++|+.||.|+||++...... ......+ ..|.+.|.+++|+|+ +.+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~--------------------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~L 228 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLH--------------------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCL 228 (524)
T ss_dssp ---------CEEEEEEEEETTTCC--------------------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEE
T ss_pred hhhhccCCCCceEEEEEccCCCCC--------------------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceE
Confidence 345678889999999998654410 0000001 124578999999997 4678
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCC---------ceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTT---------PEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
|+++ .|++|+|||+.++... +... ..|...|++++|+|+ ..|++|+.||+|++||+++
T Consensus 229 As~s----------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~ 296 (524)
T 2j04_B 229 SFVS----------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTD 296 (524)
T ss_dssp EEEE----------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTB
T ss_pred EEEe----------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCC
Confidence 8888 7999999999865432 1122 347789999999984 4799999999999999987
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc--cceEEEEe
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN--LAVLSLAF 227 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~ 227 (401)
+... . ..+.+|...|.++++.+++++ .+|++++.|++|++||++.... ...+. +|. ..|.+++|
T Consensus 297 ~~~~-~----~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~---~~~~~-----~~~~~~~v~~v~f 363 (524)
T 2j04_B 297 PEVP-S----FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT---TKTTV-----SRFRGSNLVPVVY 363 (524)
T ss_dssp CSSC-S----EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH---HCEEE-----EECSCCSCCCEEE
T ss_pred CCCc-e----EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc---ccccc-----cccccCcccceEe
Confidence 6421 1 224789999999953337877 8999999999999999975221 11111 122 24789999
Q ss_pred ccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-----
Q psy17342 228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN----- 302 (401)
Q Consensus 228 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----- 302 (401)
+ |++..+++++.|+.|++||++.. .++..+.+|.+.|++++|+|+ +++|++|+.|++|++||+..+
T Consensus 364 s-p~~~~l~s~~~d~tv~lwd~~~~--~~~~~l~gH~~~V~sva~Sp~------g~~l~Sgs~Dgtv~lwd~~~~~~~~~ 434 (524)
T 2j04_B 364 C-PQIYSYIYSDGASSLRAVPSRAA--FAVHPLVSRETTITAIGVSRL------HPMVLAGSADGSLIITNAARRLLHGI 434 (524)
T ss_dssp E-TTTTEEEEECSSSEEEEEETTCT--TCCEEEEECSSCEEEEECCSS------CCBCEEEETTTEEECCBSCSSTTTCC
T ss_pred C-CCcCeEEEeCCCCcEEEEECccc--ccceeeecCCCceEEEEeCCC------CCeEEEEECCCEEEEEechHhhcccc
Confidence 9 78889999999999999999843 356778899999999999998 789999999999999985321
Q ss_pred ---------------------------------------CceEEEeecCCceEEEEECCCCC--cEEEEEecCCEEEEEe
Q psy17342 303 ---------------------------------------KPVHSFNEFRDYVMDVQWSPINP--ALFATVEVAGRVDLWN 341 (401)
Q Consensus 303 ---------------------------------------~~~~~~~~~~~~v~~v~~~~~~~--~~l~~~~~d~~i~iwd 341 (401)
..+.++.+|...|.+|+|+|+++ .++|+|+.||.|+||+
T Consensus 435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 11223445788999999999963 3899999999999999
Q ss_pred CCC
Q psy17342 342 LNL 344 (401)
Q Consensus 342 ~~~ 344 (401)
+..
T Consensus 515 l~~ 517 (524)
T 2j04_B 515 LSL 517 (524)
T ss_dssp CSC
T ss_pred ccc
Confidence 874
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=271.38 Aligned_cols=338 Identities=15% Similarity=0.167 Sum_probs=223.7
Q ss_pred chhh-hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCC
Q psy17342 2 DWAE-AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPE 79 (401)
Q Consensus 2 ~~~~-~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 79 (401)
.|.. -+..+++|+.||.+++|+............. ............|...|.+++|+| ++..
T Consensus 50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---------------AVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------EEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------ccccccccccccCCCcEEEEEEccCCCcE
Confidence 4555 6789999999999999998876633222100 000011111224778999999999 6778
Q ss_pred eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC--ceEEEEecCCeEEEEECCCCCCCcee
Q psy17342 80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVH 157 (401)
Q Consensus 80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~g~~dg~v~iw~~~~~~~~~~~ 157 (401)
|++++ .|+.|++||+.+++... .+.+...+.++.|+|.++ .++++|+.+|.|++||++++...
T Consensus 115 l~s~~----------~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--- 179 (408)
T 4a11_B 115 FTSSS----------FDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--- 179 (408)
T ss_dssp EEEEE----------TTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---
T ss_pred EEEEe----------CCCeEEEeeCCCCccce--eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---
Confidence 88888 79999999999766544 345678999999999653 38999999999999999887654
Q ss_pred eccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCcccccc--------ccccccCCccceEEEEec
Q psy17342 158 RTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDL--------QYNNKQTKNLAVLSLAFP 228 (401)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~ 228 (401)
..+..|...|.+++| +|++. .+++++.||.|++||++........... .......|...|.+++|+
T Consensus 180 ---~~~~~~~~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 180 ---HILQGHRQEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp ---EEECCCCSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred ---eeecCCCCcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 234689999999999 88888 5889999999999999864422222110 000124588899999999
Q ss_pred cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC--Ccee--eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342 229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE--GPVV--GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304 (401)
Q Consensus 229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~v~--~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 304 (401)
+++++|++++.|+.|++||+..... ...+..+. .... ...+.... ...+++++.|+.|++||+.++++
T Consensus 255 -~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 255 -SDGLHLLTVGTDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGC-----SSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp -TTSSEEEEEETTSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCSS-----SSCEEEEEETTEEEEEETTTCCE
T ss_pred -CCCCEEEEecCCCeEEEEECCCCcc--ceeccccccccccccceeEEecCC-----CceEEEEecCCEEEEEECcCCcc
Confidence 7999999999999999999985442 22222111 1111 11111111 45667777799999999999999
Q ss_pred eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEEEEecCCcEE
Q psy17342 305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLCVGDEKGAIT 383 (401)
Q Consensus 305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~ 383 (401)
+..+.+|...|.+++|+|+++ +|++++.||.|++||+.+.+.+..... .. ....+.+ ....+.+.+.++.++
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~ 399 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPDDDE----TT--TKSQLNPAFEDAWSSSDEEGGTS 399 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC----------------------------------------
T ss_pred eeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCCCCc----eE--eccccccccceeecccCccCcee
Confidence 999999999999999999997 899999999999999998876554321 11 1123333 334456677889999
Q ss_pred EEEecc
Q psy17342 384 MFDVGE 389 (401)
Q Consensus 384 iw~~~~ 389 (401)
+|+...
T Consensus 400 ~W~~~~ 405 (408)
T 4a11_B 400 AWSHPQ 405 (408)
T ss_dssp ------
T ss_pred ecCCcc
Confidence 998753
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-37 Score=280.19 Aligned_cols=279 Identities=11% Similarity=0.087 Sum_probs=208.3
Q ss_pred hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCCeEEEE
Q psy17342 6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPELLLAS 84 (401)
Q Consensus 6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 84 (401)
.+..||+|+.||.|+|||+........ .....|.+.|++++|+| ++.+|++++
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~--------------------------~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTF--------------------------IKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEE--------------------------ECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeE--------------------------EEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 356799999999999999875541100 01125779999999998 577888888
Q ss_pred eccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
.|++|++||++++.. ..+... +...+.+++|+|++ .+|++|+.||.|++||++.... ..
T Consensus 185 ----------~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~-------~~ 245 (435)
T 4e54_B 185 ----------MEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKEL-------WN 245 (435)
T ss_dssp ----------SSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBC-------CC
T ss_pred ----------CCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCccee-------EE
Confidence 799999999985432 222222 23467899999977 7999999999999999975432 34
Q ss_pred ccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342 163 VMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 241 (401)
+.+|...|.+++| +|++. +|++++.|+.|++||++.......... ..+|...|++++|+ +++.+|++++.|
T Consensus 246 ~~~h~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~s-pdg~~l~s~~~D 317 (435)
T 4e54_B 246 LRMHKKKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----SLPHRHPVNAACFS-PDGARLLTTDQK 317 (435)
T ss_dssp SBCCSSCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----CCBCSSCEEECCBC-TTSSEEEEEESS
T ss_pred EecccceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEE-----eeeccccccceeEC-CCCCeeEEEcCC
Confidence 5789999999999 88775 688999999999999986433322222 23488899999999 899999999999
Q ss_pred ceEEEEeCCCCCCCceeeecCCCC------ceeeeecCccCCCCCCCcEEEEEe------------CCCeEEEEEeeCCC
Q psy17342 242 GNVYSACRHGNKAGNVECYEGHEG------PVVGLSSHRAQGHIDFSHLYLTSS------------YDWSVKLWNIKENK 303 (401)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~~------~v~~i~~~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~ 303 (401)
+.|++||+.... ....+..|.. .+....|+|. +.++++++ .++.|++||..+++
T Consensus 318 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 318 SEIRVYSASQWD--CPLGLIPHPHRHFQHLTPIKAAWHPR------YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp SCEEEEESSSSS--SEEEECCCCCCCCSSSCCCBCEECSS------SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred CEEEEEECCCCc--cceEEecccccccccceeEEEEEcCC------CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 999999997543 3444444432 2334566776 45555553 34579999999999
Q ss_pred ceEEEe-ecCCceEEE-EECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342 304 PVHSFN-EFRDYVMDV-QWSPINPALFATVEVAGRVDLWNLNLDTE 347 (401)
Q Consensus 304 ~~~~~~-~~~~~v~~v-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 347 (401)
.+..+. .|...|.++ +|+|+|. +|++|+ |+.|+|||+++++.
T Consensus 390 ~~~~l~~~~~~~v~s~~~fspdg~-~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 390 MMCQLYDPESSGISSLNEFNPMGD-TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEEECCSSCCCCCCEEEECTTSS-CEEEEC-SSEEEECCCC----
T ss_pred EEEEEeCCCCCcEEEEEEECCCCC-EEEEEc-CCcEEEEECCcCee
Confidence 888865 577888887 6999997 778776 88999999988753
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=268.92 Aligned_cols=287 Identities=13% Similarity=0.157 Sum_probs=216.6
Q ss_pred chhhhhc-ccccccc---ccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC-
Q psy17342 2 DWAEAGE-SQISGTL---HGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ- 76 (401)
Q Consensus 2 ~~~~~~~-~~~~g~~---~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 76 (401)
.|...+. .+++|+. ||.+++|++...... .. ....|...|.+++|+|+
T Consensus 25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------~~------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------LL------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp EECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------EE------EEEEESSCEEEEECTTCC
T ss_pred EEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------ce------eeecccCcEEEEEEcCCC
Confidence 3555553 4567776 999999998754410 00 01135688999999999
Q ss_pred --CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE------eCCCCceEEEEecCCeEEEEEC
Q psy17342 77 --HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF------AKFNPYLILGGTYSGQIVLWDT 148 (401)
Q Consensus 77 --~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~g~~dg~v~iw~~ 148 (401)
+..|++++ .|+.|++||+.+++........|...|.+++| +|++ .+|++|+.||.|++||+
T Consensus 78 ~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 78 LQQRYLATGD----------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp TTTCCEEEEE----------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECT
T ss_pred CCCceEEEec----------CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeC
Confidence 68999999 79999999999876333344467899999966 5655 68999999999999999
Q ss_pred CCCCC-CceeeccccccCCCCcEEEEEEe--ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 149 RVQKK-TPVHRTPLSVMAHTHPVFCMSVI--GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
..... ...... ....+...+.+++|. .++++.++++++.||.|++||++.... .. ...+...|.++
T Consensus 147 ~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~-----~~~~~~~v~~~ 215 (357)
T 3i2n_A 147 RQKDDPVANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL----RW-----ETNIKNGVCSL 215 (357)
T ss_dssp TSCSSCSEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE----EE-----EEECSSCEEEE
T ss_pred CCCCCcceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce----ee-----ecCCCCceEEE
Confidence 88762 211110 011224489999841 178999999999999999999985321 11 12367789999
Q ss_pred EeccC---CCCeEEEEcCCceEEEEeCCCCCCCceeee-----cCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEE
Q psy17342 226 AFPQN---DVNNFVVGCEDGNVYSACRHGNKAGNVECY-----EGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKL 296 (401)
Q Consensus 226 ~~~~~---~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~i 296 (401)
+|+ + ++..+++++.||.|++||++... ....+ .+|...|++++|+|+ +. +|++++.|+.|++
T Consensus 216 ~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 216 EFD-RKDISMNKLVATSLEGKFHVFDMRTQH--PTKGFASVSEKAHKSTVWQVRHLPQ------NRELFLTAGGAGGLHL 286 (357)
T ss_dssp EES-CSSSSCCEEEEEESTTEEEEEEEEEEE--TTTEEEEEEEECCSSCEEEEEEETT------EEEEEEEEETTSEEEE
T ss_pred EcC-CCCCCCCEEEEECCCCeEEEEeCcCCC--cccceeeeccCCCcCCEEEEEECCC------CCcEEEEEeCCCcEEE
Confidence 999 6 89999999999999999987543 23333 389999999999998 56 8999999999999
Q ss_pred EEeeCC-------------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 297 WNIKEN-------------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 297 wd~~~~-------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
||++.+ +++..+..|...|.+++|+|+++.++++++.|+.|++||+.+.+
T Consensus 287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999864 35667888999999999999998544489999999999998754
No 87
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-36 Score=287.80 Aligned_cols=303 Identities=12% Similarity=0.115 Sum_probs=243.6
Q ss_pred eeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC----CCCceEEEecCCC-eeEEEE
Q psy17342 52 SFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK----KTTPEFEFFCQSP-VLSCCF 126 (401)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~-v~~~~~ 126 (401)
++.+.+......|.+.|.+++|+|++++|++++ ++.|++||+.++ +... ....|... |++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~ 72 (615)
T 1pgu_A 5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-----------GKSAFVRCLDDGDSKVPPVV-QFTGHGSSVVTTVKF 72 (615)
T ss_dssp EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-----------TTEEEEEECCSSCCSSCSEE-EECTTTTSCEEEEEE
T ss_pred chhhccCCCCCCccCceeEEEECCCCCEEEEec-----------CCeEEEEECCCCCCccccce-EEecCCCceEEEEEE
Confidence 344444444456789999999999999999988 789999999976 4333 33457888 999999
Q ss_pred eC--CCCceEEEEecCCeEEEEECCCCCCCc--eeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeec
Q psy17342 127 AK--FNPYLILGGTYSGQIVLWDTRVQKKTP--VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSL 198 (401)
Q Consensus 127 ~~--~~~~~l~~g~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~ 198 (401)
+| ++ .+|++|+.||.|++||+.++.... .......+..|..+|.+++| +|++.+|++++.+ +.|.+||.
T Consensus 73 sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~ 149 (615)
T 1pgu_A 73 SPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS 149 (615)
T ss_dssp CSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT
T ss_pred CcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC
Confidence 99 87 789999999999999997541000 00111234679999999999 9999999999988 78999984
Q ss_pred cCCCCCccccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCC---ceeeeecCc
Q psy17342 199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEG---PVVGLSSHR 274 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~ 274 (401)
.. . ... ..+|...|.+++|+ +++. .+++++.|+.|++||... .+.+..+.+|.. .|.+++|+|
T Consensus 150 ~~---~--~~~-----~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 150 GN---S--LGE-----VSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp CC---E--EEE-----CCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECS
T ss_pred CC---c--cee-----eecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECC
Confidence 31 1 112 34588899999999 6665 899999999999999874 446778889999 999999999
Q ss_pred cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE-e---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF-N---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 350 (401)
+. +++|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++. +|++++.|+.|++||+++++....
T Consensus 217 ~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 217 DS-----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp TT-----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred CC-----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEE
Confidence 84 489999999999999999999999998 6 899999999999 886 899999999999999998765544
Q ss_pred eEEe-ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 351 TSAI-VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 351 ~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
+... ......+.++.|+ ++.++++++.||.|++||+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 290 WTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp EECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred EcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 4321 0113567888886 8999999999999999999875
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=265.17 Aligned_cols=285 Identities=12% Similarity=0.147 Sum_probs=233.0
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|.|..-+.++++|+.||.+++||......+. .+ ..|...|.+++|+|++++|
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------~~----~~h~~~v~~~~~~~~~~~l 89 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLG------------------------TL----DGHTGTIWSIDVDCFTKYC 89 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTTCCEEE------------------------EE----CCCSSCEEEEEECTTSSEE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCCchhhh------------------------hh----hhcCCcEEEEEEcCCCCEE
Confidence 3466678899999999999999976554110 00 1466889999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----CeEEEEECCCCCCCc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----GQIVLWDTRVQKKTP 155 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~v~iw~~~~~~~~~ 155 (401)
++++ .|+.|++||+.+++....+ .+...+.+++|+|++ .++++++.+ |.|++||+.......
T Consensus 90 ~s~~----------~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 90 VTGS----------ADYSIKLWDVSNGQCVATW--KSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEE----------TTTEEEEEETTTCCEEEEE--ECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEEe----------CCCeEEEEECCCCcEEEEe--ecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce
Confidence 9999 7999999999987765544 478899999999977 678888888 999999998765422
Q ss_pred eee-----ccccccCCCC--cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342 156 VHR-----TPLSVMAHTH--PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP 228 (401)
Q Consensus 156 ~~~-----~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (401)
... ....+..|.. .+.+++| ++++..|++++.||.|++||++..... ... ...|...|.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~-----~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEY--VDS-----IDLHEKSISDMQFS 227 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEE--EEE-----EECCSSCEEEEEEC
T ss_pred eecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEe--EEE-----EecCCCceeEEEEC
Confidence 111 1112345555 9999999 899999999999999999999752222 222 23377899999999
Q ss_pred cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--------------eE
Q psy17342 229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--------------SV 294 (401)
Q Consensus 229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--------------~i 294 (401)
+++.+|++++.|+.|++||++.. ..+..+. +...+.+++|+|+ +.++++++.++ .+
T Consensus 228 -~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~-~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 228 -PDLTYFITSSRDTNSFLVDVSTL--QVLKKYE-TDCPLNTAVITPL------KEFIILGGGQEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp -TTSSEEEEEETTSEEEEEETTTC--CEEEEEE-CSSCEEEEEECSS------SSEEEEEECCC-------------CEE
T ss_pred -CCCCEEEEecCCceEEEEECCCC--ceeeeec-CCCCceeEEecCC------CceEEEeecCCCceEEEEecCCCccee
Confidence 79999999999999999999844 3555665 7889999999999 78999999888 89
Q ss_pred EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
++||+.+++++..+..|...|.+++|+|+++ +|++++.||.|++|+++.+.
T Consensus 298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHH
T ss_pred EEEecCCCcchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECcccc
Confidence 9999999999999999999999999999997 89999999999999998654
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-36 Score=290.59 Aligned_cols=278 Identities=18% Similarity=0.195 Sum_probs=216.7
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
.+.++||+.||.|++|++......... ... ....|...|.+++|+|++++|++++
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~-------------------~~~----~~~~h~~~v~~v~~s~~g~~l~sgs-- 449 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGV-------------------AQR----RLTGHSHFVEDVVLSSDGQFALSGS-- 449 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCE-------------------EEE----EEECCSSCEEEEEECTTSSEEEEEE--
T ss_pred CCEEEEEeCCCcEEEEEccCCCccccc-------------------ccc----eecCCCCcEEEEEECCCCCEEEEEe--
Confidence 357999999999999998654411000 001 1125778999999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.|+.|+|||+.++.....+ ..|...|.+++|+|++ .+|++|+.|++|++||......... .....+|
T Consensus 450 --------~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~---~~~~~~h 516 (694)
T 3dm0_A 450 --------WDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTI---SEGGEGH 516 (694)
T ss_dssp --------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEE---CSSTTSC
T ss_pred --------CCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceee---ccCCCCC
Confidence 7999999999977655433 4578999999999977 7899999999999999865432111 1123579
Q ss_pred CCcEEEEEEeecCCc--eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342 167 THPVFCMSVIGTQNA--HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV 244 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 244 (401)
...|.+++| +|++ ..+++++.|++|++||++... .... +.+|...|++++|+ +++++|++|+.|+.|
T Consensus 517 ~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~-----~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 517 RDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCK---LRST-----LAGHTGYVSTVAVS-PDGSLCASGGKDGVV 585 (694)
T ss_dssp SSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCEEEEEEC-TTSSEEEEEETTSBC
T ss_pred CCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCc---EEEE-----EcCCCCCEEEEEEe-CCCCEEEEEeCCCeE
Confidence 999999999 6665 689999999999999997521 1112 34588999999999 899999999999999
Q ss_pred EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------------
Q psy17342 245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------------ 312 (401)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------ 312 (401)
++||+... +.+..+. +...|.+++|+|+ +.++++++ ++.|++||+++++.+..+..+.
T Consensus 586 ~iwd~~~~--~~~~~~~-~~~~v~~~~~sp~------~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 586 LLWDLAEG--KKLYSLE-ANSVIHALCFSPN------RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp EEEETTTT--EEEECCB-CSSCEEEEEECSS------SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred EEEECCCC--ceEEEec-CCCcEEEEEEcCC------CcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccc
Confidence 99999744 3455555 4568999999998 56666665 7779999999988777665321
Q ss_pred -------CceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 313 -------DYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 313 -------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
..+++++|+|+++ +|++|+.||.|++||+..
T Consensus 656 ~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 1378999999997 899999999999999863
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-36 Score=271.91 Aligned_cols=299 Identities=13% Similarity=0.151 Sum_probs=229.6
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC---CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT---TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
...++++|+...+++.+ +.+|.|+||++..... .......|.+.|++++|+|++..+|++|+.||.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~---------~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~ 107 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEA---------SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM 107 (402)
T ss_dssp SCSEEECSSEEEEEBCC---------SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CCcEEECCCeEEEEEEE---------cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence 44578888876555433 2799999999965321 11122357899999999994448999999999999
Q ss_pred EEECCCCCCCcee-eccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 145 LWDTRVQKKTPVH-RTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 145 iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
+||+.++...... .....+.+|...|.+++| +|++ .+|++++.||.|++||++... ....+. ...|...|
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~---~~~~~~~v 179 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGA---AVLTLG---PDVHPDTI 179 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTE---EEEEEC---TTTCCSCE
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCC---ccEEEe---cCCCCCce
Confidence 9999887432111 111345789999999999 8898 699999999999999998522 222220 03478899
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCc-eeeeecCccCCCCCCCcEEEEE---eCCCeEEEE
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGP-VVGLSSHRAQGHIDFSHLYLTS---SYDWSVKLW 297 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~-v~~i~~~~~~~~~~~~~~l~s~---~~d~~i~iw 297 (401)
.+++|+ +++.+|++++.|+.|++||++.. ..+..+ .+|.+. +.++.|+|+ +.+|++| +.|+.|++|
T Consensus 180 ~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 180 YSVDWS-RDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSE------GKILTTGFSRMSERQVALW 250 (402)
T ss_dssp EEEEEC-TTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSCSSSCCEEEECST------TEEEEEEECTTCCEEEEEE
T ss_pred EEEEEC-CCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCCCCcceEEEEcCC------CcEEEEeccCCCCceEEEE
Confidence 999999 79999999999999999999843 356666 678776 899999998 7899998 689999999
Q ss_pred EeeCCCc-eEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 298 NIKENKP-VHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 298 d~~~~~~-~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
|+++++. +.... .|...+.+++|+|+++.++++++.|+.|++||+.+++. +..+.. ..+...|.+++|+|++.+++
T Consensus 251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECCGGGSCG
T ss_pred cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEecccccce
Confidence 9988664 44443 46778999999999985556677899999999998774 333332 33668899999999999887
Q ss_pred EEecCCcEEEEEeccCcccee
Q psy17342 375 VGDEKGAITMFDVGEVGIACL 395 (401)
Q Consensus 375 ~~~~dg~v~iw~~~~~~~~~l 395 (401)
+ .++.+++|++.++..+.+
T Consensus 330 s--~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 330 N--KCEIARFYKLHERKCEPI 348 (402)
T ss_dssp G--GTEEEEEEEEETTEEEEE
T ss_pred e--cceeEEEEEcCCCcEEEE
Confidence 5 566899999998765544
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.3e-37 Score=272.16 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=211.7
Q ss_pred chhhhh-ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCC
Q psy17342 2 DWAEAG-ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPE 79 (401)
Q Consensus 2 ~~~~~~-~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 79 (401)
.|...+ ..+++|+.||.+++||.........+ ....|...|.+++|+| +++.
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI--------------------------QGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE--------------------------CCCSTTCBEEEEEEETTEEEE
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCCcccceee--------------------------ecCCcCCceeEEEeCCCCCCE
Confidence 355555 78999999999999998755411000 0124678999999999 6788
Q ss_pred eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342 80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH 157 (401)
Q Consensus 80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~ 157 (401)
|++++ .|+.|++||+.+ .....+... +...|.+++|+|++ .+|++|+.|+.|++||++. +..
T Consensus 134 l~s~~----------~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~--- 197 (383)
T 3ei3_B 134 LFVSS----------IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HEI--- 197 (383)
T ss_dssp EEEEE----------TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CEE---
T ss_pred EEEEe----------CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CEE---
Confidence 99888 799999999984 333333222 24779999999977 7899999999999999943 221
Q ss_pred eccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeE
Q psy17342 158 RTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNF 235 (401)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l 235 (401)
..+..|...|.+++| +|++. +|++++.|+.|++||++........... .+|...|.+++|+ + ++.+|
T Consensus 198 ---~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~s-~~~~~~l 266 (383)
T 3ei3_B 198 ---FKEKLHKAKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-----MPHEKPVNAAYFN-PTDSTKL 266 (383)
T ss_dssp ---EEEECSSSCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-----EECSSCEEEEEEC-TTTSCEE
T ss_pred ---EEeccCCCcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-----ecCCCceEEEEEc-CCCCCEE
Confidence 235689999999999 88988 9999999999999999863322222221 2378899999999 6 99999
Q ss_pred EEEcCCceEEEEeCCCCCCCceeeecCC-------CCcee----------eeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 236 VVGCEDGNVYSACRHGNKAGNVECYEGH-------EGPVV----------GLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~-------~~~v~----------~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
++++.|+.|++||++... ....+.+| ...+. .++++|+ +.+ +++.|+.|++||
T Consensus 267 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d------g~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWS--KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD------DQL--LLNDKRTIDIYD 336 (383)
T ss_dssp EEEESSSEEEEEETTBTT--SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC------TTT--CTTCCCCEEEEE
T ss_pred EEEcCCCcEEEEECCCCc--cccccccccccccccccceEEeccCCCCceEEEecCC------ccc--ccCCCCeEEEEe
Confidence 999999999999998543 33344433 33333 3445554 333 667899999999
Q ss_pred eeCCCceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 299 IKENKPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 299 ~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
+.+++++..+.. |...+..++|+|+++ +|++++ |+.|++||+++
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 337 ANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred cCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence 999999999987 467788889999997 788886 99999999874
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-36 Score=269.15 Aligned_cols=290 Identities=10% Similarity=0.131 Sum_probs=222.9
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC----CCCeEE
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ----HPELLL 82 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~ 82 (401)
...+++++.++.+++|+......+. ....+.. ..|...|.+++|+|+ +++|++
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~---------------------~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIR---------------------LLQSYVD--ADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEE---------------------EEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEECCCCEEEEEEcCCCcEEE---------------------eeeeccc--cCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3447777778899999987554211 1111111 136688999999999 567998
Q ss_pred EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
++ .|+.|++||+.+++....+ ..|...|.+++|+|++..+|++|+.||.|++||+++++...... .
T Consensus 91 ~~----------~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~ 156 (366)
T 3k26_A 91 AG----------SRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---G 156 (366)
T ss_dssp EE----------TTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---S
T ss_pred ec----------CCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---c
Confidence 88 7999999999977655443 34789999999999444899999999999999998876432211 1
Q ss_pred ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc---------------------ccccccCCccc
Q psy17342 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL---------------------QYNNKQTKNLA 221 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 221 (401)
+..|...|.+++| +|++.+|++++.||.|++||++..... ..+.. .......|...
T Consensus 157 ~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 157 VEGHRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp TTSCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred cccccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 2579999999999 899999999999999999999752211 00000 00012237889
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC------------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA------------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS 289 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~ 289 (401)
|.+++|+ ++++++++.|+.|++||+..... ..+..+.+|...|.+++|+|+.. +.+|++++
T Consensus 234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~~~l~~~~ 306 (366)
T 3k26_A 234 VDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW----QKMLALGN 306 (366)
T ss_dssp CCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT----SSEEEEEC
T ss_pred EEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC----CcEEEEEe
Confidence 9999998 56999999999999999875432 23667788999999999999721 48999999
Q ss_pred CCCeEEEEEeeCCCceE----EEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 290 YDWSVKLWNIKENKPVH----SFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 290 ~d~~i~iwd~~~~~~~~----~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
.||.|++||+.++++.. .+..| ...|.+++|+|+++ +|++++.||.|++||+.+
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence 99999999999876543 67777 78999999999997 899999999999999863
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.2e-36 Score=271.97 Aligned_cols=282 Identities=15% Similarity=0.273 Sum_probs=230.7
Q ss_pred ccccce-EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342 63 SKNRNV-TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG 141 (401)
Q Consensus 63 ~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 141 (401)
.|.+.| .++ ++++++|++++ .||.|++||+.+++....+ ..|...|.+++|++ .++++|+.||
T Consensus 116 ~h~~~v~~~~--~~~g~~l~sg~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~---~~l~s~~~dg 179 (445)
T 2ovr_B 116 GHDDHVITCL--QFCGNRIVSGS----------DDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD---NIIISGSTDR 179 (445)
T ss_dssp CSTTSCEEEE--EEETTEEEEEE----------TTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET---TEEEEEETTS
T ss_pred ccCCCcEEEE--EEcCCEEEEEE----------CCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC---CEEEEEeCCC
Confidence 355654 554 45688999999 7999999999987655433 35789999999973 5899999999
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
.|++||+.+++.. ..+.+|...|.++.| ++..+++++.||.|++||++... .... ..+|...
T Consensus 180 ~i~vwd~~~~~~~------~~~~~h~~~v~~~~~----~~~~l~s~s~dg~i~~wd~~~~~---~~~~-----~~~~~~~ 241 (445)
T 2ovr_B 180 TLKVWNAETGECI------HTLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWDIETGQ---CLHV-----LMGHVAA 241 (445)
T ss_dssp CEEEEETTTTEEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEESSSCC---EEEE-----EECCSSC
T ss_pred eEEEEECCcCcEE------EEECCCCCcEEEEEe----cCCEEEEEeCCCEEEEEECCCCc---EEEE-----EcCCccc
Confidence 9999999887643 235689999999998 35679999999999999997522 1112 2347889
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
|.++++ ++..+++|+.|+.|++||.+. ...+..+.+|...|.++.+. +.++++++.|+.|++||+++
T Consensus 242 v~~~~~---~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 242 VRCVQY---DGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFD--------GIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EEEEEE---CSSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEEC--------SSEEEEEETTSCEEEEETTT
T ss_pred EEEEEE---CCCEEEEEcCCCEEEEEECCC--CcEeEEecCCCCceEEEEEC--------CCEEEEEeCCCeEEEEECCC
Confidence 999998 478999999999999999874 44678888999999999993 68999999999999999999
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
++++..+..|...+.++.++ +. ++++++.||.|++||+++++....+.....|...|++++|+ +++|++|+.||.
T Consensus 309 ~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 383 (445)
T 2ovr_B 309 GNCIHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT 383 (445)
T ss_dssp CCEEEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred CCEEEEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe
Confidence 99999999999999998885 33 78999999999999999877655543323367889999995 689999999999
Q ss_pred EEEEEeccCccceeeee
Q psy17342 382 ITMFDVGEVGIACLKFI 398 (401)
Q Consensus 382 v~iw~~~~~~~~~l~~~ 398 (401)
|++||+.+++ .++.+
T Consensus 384 v~iwd~~~~~--~~~~~ 398 (445)
T 2ovr_B 384 VKLWDLKTGE--FIRNL 398 (445)
T ss_dssp EEEEETTTCC--EEEEE
T ss_pred EEEEECCCCc--eeeee
Confidence 9999999884 44443
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-36 Score=269.52 Aligned_cols=278 Identities=16% Similarity=0.180 Sum_probs=218.5
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
+..+++++.||.+++|+....... ..+ ...|...|.+++|+|++++|++++
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~------------------------~~~---~~~~~~~v~~v~~s~~~~~l~~~~-- 153 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVS------------------------ALA---ETDESTYVASVKWSHDGSFLSVGL-- 153 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEE------------------------EEE---ECCTTCCEEEEEECTTSSEEEEEE--
T ss_pred CCCEEEEECCCeEEEeeCCCCcEe------------------------Eee---ecCCCCCEEEEEECCCCCEEEEEC--
Confidence 356899999999999998665511 000 012568899999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.||.|++||+.+++....+ ..|...|.+++|++ .++++|+.||.|++||++...... ..+..|
T Consensus 154 --------~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~ 216 (401)
T 4aez_A 154 --------GNGLVDIYDVESQTKLRTM-AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQI-----GTLQGH 216 (401)
T ss_dssp --------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEE-----EEEECC
T ss_pred --------CCCeEEEEECcCCeEEEEe-cCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCccee-----eEEcCC
Confidence 7999999999977655443 35789999999953 689999999999999998544221 234689
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc--CCceE
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNV 244 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i 244 (401)
.+.|.+++| ++++.+|++++.|+.|++||++.. ..... ...|...|.+++|+|....++++++ .|+.|
T Consensus 217 ~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~-----~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 217 SSEVCGLAW--RSDGLQLASGGNDNVVQIWDARSS---IPKFT-----KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTCS---SEEEE-----ECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred CCCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCC---CccEE-----ecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 999999999 899999999999999999999852 12222 2347889999999954556666655 79999
Q ss_pred EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceE--EEeecCCceEEEEE
Q psy17342 245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVH--SFNEFRDYVMDVQW 320 (401)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~ 320 (401)
++||+... ..+..+. +...|.+++|+|+ +.++++++ .|+.|++||+.+++... .+.+|...|.+++|
T Consensus 287 ~i~d~~~~--~~~~~~~-~~~~v~~~~~s~~------~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~ 357 (401)
T 4aez_A 287 HFWNAATG--ARVNTVD-AGSQVTSLIWSPH------SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL 357 (401)
T ss_dssp EEEETTTC--CEEEEEE-CSSCEEEEEECSS------SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE
T ss_pred EEEECCCC--CEEEEEe-CCCcEEEEEECCC------CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE
Confidence 99999843 4566665 6788999999998 68888844 89999999999865544 46689999999999
Q ss_pred CCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342 321 SPINPALFATVEVAGRVDLWNLNLDTEVPA 350 (401)
Q Consensus 321 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 350 (401)
+|+++ +|++++.||.|++||+.+++.+..
T Consensus 358 s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 358 SPDGR-ILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTSS-EEEEECTTSEEEEEECCC------
T ss_pred CCCCC-EEEEEeCCCcEEEEECCCCccccc
Confidence 99997 899999999999999998876544
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=267.33 Aligned_cols=291 Identities=10% Similarity=0.070 Sum_probs=222.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC---CCceEEE---------------------------
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---TTPEFEF--------------------------- 115 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~~~--------------------------- 115 (401)
.++.+++|+|+|++|+++. ++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN 73 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----------TTEEEEEEEETTTEEEEEEEEECCC-------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccc
Confidence 5799999999999666665 8899999998876 3322221
Q ss_pred --------------------------ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC--CCCCCceeeccccccCCC
Q psy17342 116 --------------------------FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR--VQKKTPVHRTPLSVMAHT 167 (401)
Q Consensus 116 --------------------------~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~ 167 (401)
.|...|.+++|+|++..++++|+.||.|++||+. ++...... ....|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~ 149 (450)
T 2vdu_B 74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR----KRFCFS 149 (450)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE----EEEECS
T ss_pred cccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee----ecccCC
Confidence 1223699999999885556899999999999998 55543221 113677
Q ss_pred CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc-cccccccccccCCccceEEEEeccCC---CCeEEEEcCCce
Q psy17342 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ-ETRDLQYNNKQTKNLAVLSLAFPQND---VNNFVVGCEDGN 243 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~ 243 (401)
..|.+++| +|++.+|++++.+|.+.+|++....... .... ..+|...|.+++|+ ++ +.+|++|+.|+.
T Consensus 150 ~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 150 KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEP-----ILGHVSMLTDVHLI-KDSDGHQFIITSDRDEH 221 (450)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCC-----SEECSSCEEEEEEE-ECTTSCEEEEEEETTSC
T ss_pred CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCccccccccee-----eecccCceEEEEEc-CCCCCCcEEEEEcCCCc
Confidence 89999999 9999999999999999999997633222 1112 34488899999999 67 889999999999
Q ss_pred EEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec-----------
Q psy17342 244 VYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF----------- 311 (401)
Q Consensus 244 i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------- 311 (401)
|++||+... ..+.. +.+|...|.+++|+ + +.+|++++.|+.|++||+++++++..+..+
T Consensus 222 i~vwd~~~~--~~~~~~~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 222 IKISHYPQC--FIVDKWLFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp EEEEEESCT--TCEEEECCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred EEEEECCCC--ceeeeeecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 999999744 34555 56899999999999 6 799999999999999999999988888632
Q ss_pred --------------CCceEEEEECCCCCcEEEEEe-cCCEEEEEeC--CCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 312 --------------RDYVMDVQWSPINPALFATVE-VAGRVDLWNL--NLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 312 --------------~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
...|.+++|+|+++ ++++++ .|+.|++|++ ..+..+........ ...|.+++|+|++.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVISLSAHNDEFQVT 370 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEEEEEEETTEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceEEEEecCCcEEEE
Confidence 35689999999998 566666 8999999999 44432222222223 37899999999654444
Q ss_pred EEec------CCcEEEEEeccC
Q psy17342 375 VGDE------KGAITMFDVGEV 390 (401)
Q Consensus 375 ~~~~------dg~v~iw~~~~~ 390 (401)
+++. +..|.+|.+...
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETT
T ss_pred EecccCCCCCCcceEEEEEEcC
Confidence 4443 556899988654
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-37 Score=272.49 Aligned_cols=250 Identities=13% Similarity=0.129 Sum_probs=197.9
Q ss_pred cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342 117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW 196 (401)
Q Consensus 117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 196 (401)
+.++|++++|+|++ .+|++|+.|+.|++||+.++.... ...+.+|...|.+++| +|++.+|++++.|+.|++|
T Consensus 10 ~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~h~~~v~~~~~--s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 10 LPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKH----ARTFSDHDKIVTCVDW--APKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp CSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEE----CCCBCCCSSCEEEEEE--CTTTCCEEEEETTSSEEEC
T ss_pred CCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEE----EEEEecCCceEEEEEE--eCCCCEEEEEeCCCeEEEE
Confidence 46799999999977 799999999999999998762111 1345789999999999 8999999999999999999
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-CCceeeecC-CCCceeeeecCc
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-AGNVECYEG-HEGPVVGLSSHR 274 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~-~~~~v~~i~~~~ 274 (401)
|+........... ...|...|.+++|+ +++++|++++.|+.|++||++... ......+.+ |...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 83 EKRPDGTWKQTLV-----LLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ------CCCCEEE-----CCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred EcCCCCceeeeeE-----ecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 9986431222222 34488899999999 799999999999999999998543 123566777 999999999999
Q ss_pred cCCCCCCCcEEEEEeCCCeEEEEEeeC------------------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342 275 AQGHIDFSHLYLTSSYDWSVKLWNIKE------------------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR 336 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~ 336 (401)
+ +++|++++.|+.|++||++. ++++..+ .|...|.+++|+|+++ +|++++.|+.
T Consensus 157 ~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~ 228 (377)
T 3dwl_C 157 N------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSS 228 (377)
T ss_dssp T------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTE
T ss_pred C------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCc
Confidence 8 79999999999999999952 4455556 8899999999999997 7999999999
Q ss_pred EEEEeCCCCCC----CcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 337 VDLWNLNLDTE----VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 337 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
|++||+.+++. +..+ ..|...|.+++|+|+|++|++++.++. .+|+...++
T Consensus 229 i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~ 283 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITV---KLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESG 283 (377)
T ss_dssp EC-CEECSTTSCEEECCCE---ECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC--
T ss_pred EEEEECCCCCCcceeeEee---cCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCc
Confidence 99999998876 3333 367788999999999999999987664 477776544
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=254.09 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=218.6
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
|+|.. .+.||+| .|++|+|||...++.+. .+. ...|...|.+++|+|++++|
T Consensus 31 l~WS~-~~~lAvg-~D~tV~iWd~~tg~~~~------------------------~~~--~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 31 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQ------------------------LLQ--MEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp EEECT-TSEEEEE-ETTEEEEEETTTCCEEE------------------------EEE--CCSTTCCEEEEEECTTSSEE
T ss_pred EEECC-CCEEEEE-eCCEEEEEECCCCCEEE------------------------EEE--ecCCCCeEEEEEECCCCCEE
Confidence 46764 3455554 69999999987665111 010 11466789999999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
++|+ .|++|++||+++++.+..+ ..|...+.++.+. + .++++|+.++.+++|+........
T Consensus 83 ~sgs----------~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~----- 143 (318)
T 4ggc_A 83 AVGT----------SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHV----- 143 (318)
T ss_dssp EEEE----------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred EEEE----------CCCcEEEeecCCceeEEEe-cCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeE-----
Confidence 9999 7999999999987766544 3467777776664 3 689999999999999988765421
Q ss_pred ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE--EEE
Q psy17342 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF--VVG 238 (401)
Q Consensus 161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~ 238 (401)
..+.+|...+..+.+ .+++.++++++.|+.|++||++........... ...+...|.+++++|.+...+ +++
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT----FTQHQGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE----ECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred EEEcCccCceEEEEE--cCCCCEEEEEecCcceeEEECCCCcccccceee----ecccCCceEEEEecCCCCcEEEEEec
Confidence 234689999999999 899999999999999999999864322221111 234677899999995555544 456
Q ss_pred cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342 239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVHSFNEFRDYVM 316 (401)
Q Consensus 239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~ 316 (401)
+.++.|++|+..... ......+...+..+.++|. +..+++++ .|+.|++||+++++++.++.+|.+.|+
T Consensus 218 ~~~~~i~lwd~~~~~---~~~~~~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGA---CLSAVDAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp TTTCEEEEEETTTCC---EEEEEECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCCEEEEEeccccc---ccccccceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 788999999987543 3334457788999999998 46655544 799999999999999999999999999
Q ss_pred EEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 317 DVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+++|+|+++ +|++++.||+|+|||+...
T Consensus 289 ~l~~spdg~-~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 289 SLTMSPDGA-TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTSS-CEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 999999997 7999999999999999764
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=262.50 Aligned_cols=256 Identities=16% Similarity=0.190 Sum_probs=204.7
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCC-CceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFN-PYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~g~~d 140 (401)
.|.+.|.+++|+|++++|++++ .|+.|+|||+.......... ..|...|++++|+|+. ..+|++|+.|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcccEEEEEEcCCCCEEEEEE----------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 5779999999999999999999 79999999998433222222 3478999999998761 4799999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
|.|++||+.+++.... ..+..|...|.+++| +|+ +.+|++++.|+.|++||++.... ..... ...|
T Consensus 79 g~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-----~~~~ 146 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGT-TSPII-----IDAH 146 (379)
T ss_dssp SCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEE-----EECC
T ss_pred CEEEEEEcCCCceeEe----eeecCCCcceEEEEe--CCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEE-----ecCC
Confidence 9999999988752222 234679999999999 777 89999999999999999986322 12222 2347
Q ss_pred ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342 219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284 (401)
Q Consensus 219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 284 (401)
...|.+++|+|. ++..+++++.|+.|++||++.... .....+.+|...|.+++|+|+... +.+
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---~~~ 223 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL---RSY 223 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS---SEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC---CCe
Confidence 889999999943 689999999999999999975432 244677889999999999997200 279
Q ss_pred EEEEeCCCeEEEEEeeCCCce---EEE--eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 285 YLTSSYDWSVKLWNIKENKPV---HSF--NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 285 l~s~~~d~~i~iwd~~~~~~~---~~~--~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
|++++.|+.|++||++++... ..+ ..|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCC
Confidence 999999999999999886422 122 23788999999999998 788899999999999874
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=280.61 Aligned_cols=293 Identities=14% Similarity=0.155 Sum_probs=218.4
Q ss_pred EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC-CCCceEEEEecCCeEEEEECCC
Q psy17342 72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK-FNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
.|+|+++.++++. .|+.. ++.+..+..+|.+.|++++|+| ++ .+|++|+.||.|++||+.+
T Consensus 34 ~f~~~~~~~~~~~----------------~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~ 95 (437)
T 3gre_A 34 EFGPIQEIVRSPN----------------MGNLR-GKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKE 95 (437)
T ss_dssp GGCCCCCCCCCCC----------------GGGCC-CCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHH
T ss_pred hcCCccccccccc----------------ccccc-ceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcc
Confidence 3788887766544 27644 4444444345789999999999 76 7999999999999999976
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC--CCCccccccc---cccccC--CccceE
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML--SSPQETRDLQ---YNNKQT--KNLAVL 223 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~---~~~~~~--~~~~v~ 223 (401)
........... ...|...|.+++| ++++.+|++++.||.|++||++.. +......... ...... +...+.
T Consensus 96 ~~~~~~~~~~~-~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 96 IIVGEVYSSSL-TYDCSSTVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp HHTTCCCSCSE-EEECSSCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred cccCcccceee-eccCCCCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 21111111111 1259999999999 899999999999999999999521 1111111000 000011 344555
Q ss_pred EEE--eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 224 SLA--FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 224 ~~~--~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
++. ++ +++.++++|+.|+.|++||++. .+.+..+.+ |...|++++|+|+ +.+|++|+.|+.|++||+
T Consensus 173 ~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 173 RMRAFVN-EEKSLLVALTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEE------CCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp EEEEEEC-SSCEEEEEEETTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred EEEEEEc-CCCCEEEEEeCCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCC------CCEEEEEcCCCeEEEEEc
Confidence 555 44 6789999999999999999984 446777877 8999999999998 799999999999999999
Q ss_pred eCCCceEEEe-ecCCceEEEEECC----CCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--------------------
Q psy17342 300 KENKPVHSFN-EFRDYVMDVQWSP----INPALFATVEVAGRVDLWNLNLDTEVPATSAI-------------------- 354 (401)
Q Consensus 300 ~~~~~~~~~~-~~~~~v~~v~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------- 354 (401)
++++++..+. .|...|.+++|+| ++. +|++++.||.|++||+++++....+...
T Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp TTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred CCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence 9999998886 6788999996665 564 8999999999999999987654433311
Q ss_pred -e--cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342 355 -V--EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 355 -~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
. .|...|++++|+ ++++|++|+.||.|++||+.+++ +++.+
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~--~~~~~ 366 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS--SSKAV 366 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG--GCEEE
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc--cceEE
Confidence 0 145668999999 88999999999999999999874 44443
No 100
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-35 Score=262.95 Aligned_cols=249 Identities=15% Similarity=0.141 Sum_probs=208.4
Q ss_pred ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342 116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS 195 (401)
Q Consensus 116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 195 (401)
.|..+|++++|+|++ ++|++|+.|+.|++||+.+.+.... ..+.+|...|.+++| ++++.+|++++.||.|++
T Consensus 6 ~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~----~~~~~h~~~v~~~~~--~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 6 FLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQV----HELKEHNGQVTGVDW--APDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp SCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEE----EEEECCSSCEEEEEE--ETTTTEEEEEETTSCEEE
T ss_pred ccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEee----eeecCCCCcccEEEE--eCCCCEEEEEcCCCeEEE
Confidence 368899999999977 7899999999999999987642111 234689999999999 889999999999999999
Q ss_pred eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecC
Q psy17342 196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~ 273 (401)
||++... ...... ...|...|.+++|+ +++++|++++.|+.|++|+++..... ......+|...|.+++|+
T Consensus 79 wd~~~~~-~~~~~~-----~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 79 WTLKGRT-WKPTLV-----ILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EEEETTE-EEEEEE-----CCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred EECCCCe-eeeeEE-----eecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 9997521 111222 23477899999999 78999999999999999999854421 123336789999999999
Q ss_pred ccCCCCCCCcEEEEEeCCCeEEEEEee------------------CCCceEEEeecCCceEEEEECCCCCcEEEEEecCC
Q psy17342 274 RAQGHIDFSHLYLTSSYDWSVKLWNIK------------------ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG 335 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~ 335 (401)
|+ +++|++++.|+.|++||++ .++++..+..|...|.+++|+|++. +|++++.|+
T Consensus 152 ~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~ 224 (372)
T 1k8k_C 152 PN------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDS 224 (372)
T ss_dssp TT------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTT
T ss_pred CC------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCC
Confidence 98 7899999999999999953 5778888889999999999999997 899999999
Q ss_pred EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.|++||+++++.+..+ ..+...|.+++|+|++++|++| .|+.|++|++.+
T Consensus 225 ~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 TVCLADADKKMAVATL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEGGGTTEEEEE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEEECCCCceeEEE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999988755444 3567789999999999988888 899999999998
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.3e-35 Score=256.85 Aligned_cols=283 Identities=13% Similarity=0.138 Sum_probs=211.6
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
.|...|.+++|+|+|++|++++ +..++||++++.+... ... ...+..+++.+.+..++++|+.|+.
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~-----------~~~~~iw~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILST-----------LKSFEIYNVHPVAHIM--SQE-MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEEC-----------SSEEEEEEETTEEEEE--EEE-CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cCCCceEEEEECCCCCEEEEEc-----------CCEEEEEecCCcceee--eee-cCCeEEEEEcCCCCEEEEEECCccE
Confidence 4678999999999999888777 4457899988654332 222 3358888999877555577888899
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|++||..+++.... ..|..+|.++++ +++. ++++ .|+.|++||+.........+. . ..
T Consensus 83 v~iWd~~~~~~~~~-------~~~~~~v~~v~~--~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~--------~--~~ 140 (355)
T 3vu4_A 83 VHIWDDVKKQDVSR-------IKVDAPVKDLFL--SREF--IVVS-YGDVISVFKFGNPWKRITDDI--------R--FG 140 (355)
T ss_dssp EEEEETTTTEEEEE-------EECSSCEEEEEE--CSSE--EEEE-ETTEEEEEESSTTCCBSSCCE--------E--EE
T ss_pred EEEEECCCCcEEEE-------EECCCceEEEEE--cCCE--EEEE-EcCEEEEEECCCCceeeEEec--------c--CC
Confidence 99999988764321 236679999999 5553 4443 478999999986312222111 1 34
Q ss_pred EEEEeccCCCCeEEE--EcCCceEEEEeCCCCCC-------------Cc-eeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342 223 LSLAFPQNDVNNFVV--GCEDGNVYSACRHGNKA-------------GN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~--~~~d~~i~~~~~~~~~~-------------~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
..++++ + ..+++ |+.+|.|++||+..... .+ +..+.+|.++|++++|+|+ +.+|+
T Consensus 141 ~~~~~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------g~~l~ 211 (355)
T 3vu4_A 141 GVCEFS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------SDMVA 211 (355)
T ss_dssp EEEEEE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------SSEEE
T ss_pred ceEEEE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------CCEEE
Confidence 455666 3 56665 68999999999975320 11 6778999999999999998 79999
Q ss_pred EEeCCCe-EEEEEeeCCCceEEEe-e-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE-----------
Q psy17342 287 TSSYDWS-VKLWNIKENKPVHSFN-E-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS----------- 352 (401)
Q Consensus 287 s~~~d~~-i~iwd~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------- 352 (401)
+|+.|++ |++||+++++++.++. + |...|.+++|+|+++ +|++++.|+.|++||++.........
T Consensus 212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290 (355)
T ss_dssp EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence 9999998 9999999999999998 5 999999999999997 89999999999999998654322111
Q ss_pred ---------EeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 353 ---------AIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 353 ---------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
...........++|+++|++|++++.||.+++|++..++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 001112234679999999999999999999999998753
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=254.73 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=219.2
Q ss_pred hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342 5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS 84 (401)
Q Consensus 5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 84 (401)
.-+..+++|+.||.+++||...... ...+ ..|...|.+++|+|+++.|++++
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~------------------------~~~~----~~~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWL------------------------GTVV----YTGQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEE------------------------EEEE----EECSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEE------------------------EEEe----ecCCccEEEEEECCCCCEEEEec
Confidence 3467899999999999999854330 0011 13558899999999999999999
Q ss_pred eccCCCCCCCCCcEEEEEeCcCCCC--CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342 85 YHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162 (401)
Q Consensus 85 ~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~ 162 (401)
.|+.|++|++..... .......|...|.+++|. + .++++++.||.|++||. .... ..
T Consensus 79 ----------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~~~~------~~ 137 (313)
T 3odt_A 79 ----------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--GSLV------YN 137 (313)
T ss_dssp ----------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--TEEE------EE
T ss_pred ----------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--CcEE------Ee
Confidence 799999999876431 122234578899999994 3 68999999999999992 2211 23
Q ss_pred ccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342 163 VMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241 (401)
Q Consensus 163 ~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 241 (401)
+..|..++.+++| .+ ++..+++++.||.|++||... ..... ...+...+.+++|+ +++. +++++.|
T Consensus 138 ~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~------~~~~~~~i~~~~~~-~~~~-~~~~~~d 204 (313)
T 3odt_A 138 LQAHNASVWDAKV--VSFSENKFLTASADKTIKLWQNDK---VIKTF------SGIHNDVVRHLAVV-DDGH-FISCSND 204 (313)
T ss_dssp EECCSSCEEEEEE--EETTTTEEEEEETTSCEEEEETTE---EEEEE------CSSCSSCEEEEEEE-ETTE-EEEEETT
T ss_pred cccCCCceeEEEE--ccCCCCEEEEEECCCCEEEEecCc---eEEEE------eccCcccEEEEEEc-CCCe-EEEccCC
Confidence 4689999999999 45 888999999999999999432 22111 12267789999999 6666 9999999
Q ss_pred ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEEC
Q psy17342 242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321 (401)
Q Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 321 (401)
+.|++||++. .+.+..+.+|..+|++++|+|+ + .|++++.|+.|++||+++++++..+..|...|.+++|+
T Consensus 205 g~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 205 GLIKLVDMHT--GDVLRTYEGHESFVYCIKLLPN------G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM 275 (313)
T ss_dssp SEEEEEETTT--CCEEEEEECCSSCEEEEEECTT------S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred CeEEEEECCc--hhhhhhhhcCCceEEEEEEecC------C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence 9999999984 4467888999999999999998 5 68999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342 322 PINPALFATVEVAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 351 (401)
|+++ +++++.||.|++||+++++.....
T Consensus 276 ~~~~--~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 276 SNGD--IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TTSC--EEEEETTSCEEEEESCGGGCCC--
T ss_pred cCCC--EEEEeCCCcEEEEeCCCCceeehh
Confidence 9996 456889999999999987665443
No 103
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-36 Score=265.57 Aligned_cols=299 Identities=11% Similarity=0.053 Sum_probs=210.9
Q ss_pred hhhhhcccccccccc-------ccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC
Q psy17342 3 WAEAGESQISGTLHG-------LQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST 75 (401)
Q Consensus 3 ~~~~~~~~~~g~~~g-------~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 75 (401)
|..-+..+++|+.+. .|++|++......... .+..... .....|.+.|.+++++
T Consensus 22 fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~----------------~~~~~~~--~~l~~~~~~v~s~~~~- 82 (365)
T 4h5i_A 22 FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE----------------QFHILSE--FALEDNDDSPTAIDAS- 82 (365)
T ss_dssp EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH----------------HEEEEEE--EECCTTSCCCCEEEEE-
T ss_pred EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee----------------eeeeeeE--EEccCCCCceEEEEeC-
Confidence 445577888886533 5899998665521000 0000000 0111355778888765
Q ss_pred CCCCeEEEEecc-CCCCCCCCCcEEEEEeCcCCCCCceEEEe--------cCCCeeEEEEeCCCCce-EEEEecCCeEEE
Q psy17342 76 QHPELLLASYHR-NKEAPNEPDGVCLIWNTKFKKTTPEFEFF--------CQSPVLSCCFAKFNPYL-ILGGTYSGQIVL 145 (401)
Q Consensus 76 ~~~~l~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~-l~~g~~dg~v~i 145 (401)
+..++++.... .....++.|+.+++|++.+.......... +...+.+++|+|++..+ +++++.|++|+|
T Consensus 83 -~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 83 -KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp -TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred -CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 44566654211 12233446889999998764433222211 23458899999998443 245567899999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
||+.+.+.... ..|...|.+++| +|++.++++++.+ .+.+|+..... ...... ...|...|.++
T Consensus 162 wd~~~~~~~~~-------~~~~~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~-~~~~~~-----~~~~~~~v~~v 225 (365)
T 4h5i_A 162 IDPSDLTEKFE-------IETRGEVKDLHF--STDGKVVAYITGS-SLEVISTVTGS-CIARKT-----DFDKNWSLSKI 225 (365)
T ss_dssp EETTTTEEEEE-------EECSSCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCC-EEEEEC-----CCCTTEEEEEE
T ss_pred eECCCCcEEEE-------eCCCCceEEEEE--ccCCceEEeccce-eEEEEEeccCc-ceeeee-----cCCCCCCEEEE
Confidence 99988764321 247788999999 9999999999865 45566554322 111111 23478889999
Q ss_pred EeccCCCCeEEEEcCCc----eEEEEeCCCCCCC--ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 226 AFPQNDVNNFVVGCEDG----NVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
+|+ |++..+++++.++ .++.|+....... ....+.+|..+|++++|+|+ +++||+|+.|++|+|||+
T Consensus 226 ~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 226 NFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK------GELAVLASNDNSIALVKL 298 (365)
T ss_dssp EEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred EEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC------CCceEEEcCCCEEEEEEC
Confidence 999 7999999998877 5788887643322 23456789999999999999 899999999999999999
Q ss_pred eCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 300 KENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 300 ~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
++++++.++ .+|...|++++|+|+++ +|++++.|++|+|||+...
T Consensus 299 ~~~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 299 KDLSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTTEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred CCCcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 999999886 68999999999999997 8999999999999999643
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.1e-35 Score=263.30 Aligned_cols=281 Identities=10% Similarity=0.069 Sum_probs=215.4
Q ss_pred ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCCeEEEEec
Q psy17342 8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPELLLASYH 86 (401)
Q Consensus 8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~ 86 (401)
..+++|+.+|.++||++.....+..... ....|...|.+++|+| +++.|++++
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~------------------------~~~~h~~~V~~~~~~p~~~~~l~s~s-- 101 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRVDKNVP------------------------LVCGHTAPVLDIAWCPHNDNVIASGS-- 101 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEECCTTCC------------------------CBCCCSSCEEEEEECTTCTTEEEEEE--
T ss_pred EEEEEEcCCCEEEEEECccCCCCCCCCc------------------------eEecCCCCEEEEEeCCCCCCEEEEEe--
Confidence 3456788999999999855432111100 0114778999999999 888999998
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCC------CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKT------TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
.|+.|+|||+.++.. .......|...|.+++|+|++.++|++|+.||.|++||+.+++..
T Consensus 102 --------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~------ 167 (402)
T 2aq5_A 102 --------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV------ 167 (402)
T ss_dssp --------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE------
T ss_pred --------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc------
Confidence 799999999987632 222334578999999999988779999999999999999987643
Q ss_pred ccc--cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc-eEEEEeccCCCCeEEE
Q psy17342 161 LSV--MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA-VLSLAFPQNDVNNFVV 237 (401)
Q Consensus 161 ~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~ 237 (401)
..+ ..|...|.+++| ++++.+|++++.||.|++||++... ....+ ...|... +.++.|+ +++.++++
T Consensus 168 ~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~----~~~~~~~~~~~~~~~-~~~~~l~~ 237 (402)
T 2aq5_A 168 LTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGT---VVAEK----DRPHEGTRPVHAVFV-SEGKILTT 237 (402)
T ss_dssp EEECTTTCCSCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE---EEEEE----ECSSCSSSCCEEEEC-STTEEEEE
T ss_pred EEEecCCCCCceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCc---eeeee----ccCCCCCcceEEEEc-CCCcEEEE
Confidence 223 579999999999 8999999999999999999998622 11111 0224444 8899999 78999999
Q ss_pred E---cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeCCCc-eEEEeec-
Q psy17342 238 G---CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKENKP-VHSFNEF- 311 (401)
Q Consensus 238 ~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~-~~~~~~~- 311 (401)
| +.|+.|++||++............|...+.+++|+|+ +++++ +++.|+.|++||+.++++ +..+..|
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD------TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT------TTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC------CCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 9 8999999999986443222222357788999999998 56775 555799999999998875 5566554
Q ss_pred -CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342 312 -RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE 347 (401)
Q Consensus 312 -~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 347 (401)
...|.+++|+|++. ++++ .++.+++|++.++..
T Consensus 312 ~~~~v~~~~~sp~~~-~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 312 SKESQRGMGYMPKRG-LEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CSSCCSEEEECCGGG-SCGG--GTEEEEEEEEETTEE
T ss_pred cCCcccceEEecccc-ccee--cceeEEEEEcCCCcE
Confidence 58999999999996 5543 577999999987543
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-34 Score=261.42 Aligned_cols=260 Identities=15% Similarity=0.218 Sum_probs=208.2
Q ss_pred cccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--------CCCce-EEEecCCCeeEEEEeCCCC
Q psy17342 62 WSKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFK--------KTTPE-FEFFCQSPVLSCCFAKFNP 131 (401)
Q Consensus 62 ~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--------~~~~~-~~~~~~~~v~~~~~~~~~~ 131 (401)
..|.+.|++++|+|+ +..|++++ .+|.|++|++.+. ...+. ....|...|++++|+|++.
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~----------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKT----------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEEC----------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred EcCCCcEEEEEECCCCCcEEEEEC----------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 457799999999998 55666666 7999999999861 12222 2335788999999999886
Q ss_pred ceEEEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRD 209 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 209 (401)
.+|++|+.||.|++|++...... ........+..|...|.+++| +| ++..|++++.||.|++||++..........
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 69999999999999999874321 111112345689999999999 77 678999999999999999986432222222
Q ss_pred cccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342 210 LQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS 288 (401)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~ 288 (401)
+ ..|...|++++|+ +++. ++++|+.||.|++||++... .++..+.+|...|.+++|+|+. ..+|+++
T Consensus 273 ~-----~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~-----~~~l~s~ 340 (430)
T 2xyi_A 273 V-----DAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHN-----ETILASS 340 (430)
T ss_dssp E-----ECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSC-----TTEEEEE
T ss_pred e-----ecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCC-----CCEEEEE
Confidence 2 3478899999999 5554 78999999999999998532 3577888999999999999984 4689999
Q ss_pred eCCCeEEEEEeeC--------------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 289 SYDWSVKLWNIKE--------------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 289 ~~d~~i~iwd~~~--------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+.|+.|+|||+.. .+.+..+.+|...|.+++|+|+++.++++++.||.|+||++...
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999999987 35666777899999999999999878999999999999999753
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=263.36 Aligned_cols=268 Identities=11% Similarity=0.040 Sum_probs=210.0
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v 143 (401)
-...|.+++|+|||+++|+++ .|++|+ |.+.++.+ -+|...|.+++|+|+| .++.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas----------~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg--------~~~~~ 69 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTF----------PDISIG--QPKYAKDI----NCNSKNLFHVKEFPLE--------FENKL 69 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECS----------SSEEEE--EECCCSCC----SSBGGGTEEEEEECCC--------CCCTT
T ss_pred hhccEEEEEECCCCCEEEEEc----------CCceee--ccccccee----cCCCccEEEEEECCCC--------CcceE
Confidence 347899999999999999999 899999 76655444 3689999999999987 45555
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
.+|+.+.... +. ..|...|.+++| +|+|..|++++.||.|++||... ...... .. ..-....+.
T Consensus 70 ~~~~~~~~~~-------~~-~~~~~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~--~~~~~~sv~ 133 (588)
T 2j04_A 70 DFELAQQNGL-------LN-SQPVCYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SK--GNLSSRTYH 133 (588)
T ss_dssp TTSCCCSSCS-------ST-TSCSCCEEEEEE--CSSSSCEEEEETTSCEEEEETTE---EEEECC-CS--SCSTTTCEE
T ss_pred EEEeCCCceE-------ee-cCCCCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CC--CccccccEE
Confidence 5555443221 11 256889999999 99999999999999999999542 111111 00 000123699
Q ss_pred EEEeccCCCCeEEEEcCCceEEEEeCCCCCC--C---ceeee----cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKA--G---NVECY----EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV 294 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~---~~~~~----~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i 294 (401)
+++|+ |++++|++|+.||.|++|++..... . .+.++ .+|...|.+++|+|+ + +++++.|++|
T Consensus 134 svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g--Laass~D~tV 204 (588)
T 2j04_A 134 CFEWN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V--LVAALSNNSV 204 (588)
T ss_dssp EEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E--EEEEETTCCE
T ss_pred EEEEc-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC------c--EEEEeCCCeE
Confidence 99999 8999999999999999999986532 0 24555 678899999999997 6 8888999999
Q ss_pred EEEEeeCCCc---eEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe--cC
Q psy17342 295 KLWNIKENKP---VHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW--TP 368 (401)
Q Consensus 295 ~iwd~~~~~~---~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~ 368 (401)
++||+..++. ..++. +|...|.+++|+ +. .+|+++ ++.|++||+.+++.. ....+|...+..++| +|
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~---~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSIS---SLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEE---EEECSCCSCCCEEEETTCS
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEE---EEEcCCCceEEEEEeeeCC
Confidence 9999988764 35664 788899999999 44 788887 799999999875431 222378899999999 99
Q ss_pred CCcEEEEEecCCcEEEEEec
Q psy17342 369 NGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 369 ~g~~l~~~~~dg~v~iw~~~ 388 (401)
++..|++++.||+ ++|...
T Consensus 278 d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS
T ss_pred CCCEEEEEcCCCC-EEEeec
Confidence 9999999999999 999975
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=268.08 Aligned_cols=262 Identities=14% Similarity=0.189 Sum_probs=201.2
Q ss_pred EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC-----ceeeccccccCCC------------CcEEEEEEee
Q psy17342 115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT-----PVHRTPLSVMAHT------------HPVFCMSVIG 177 (401)
Q Consensus 115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~ 177 (401)
..+.+.|++++|+|++ .+|++|+.||.|+||++.+.... ........+.+|. ..|.+++|
T Consensus 25 ~~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-- 101 (447)
T 3dw8_B 25 VAEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-- 101 (447)
T ss_dssp CCGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--
T ss_pred ccccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE--
Confidence 3457899999999977 79999999999999999876521 1111113456887 88999999
Q ss_pred cCCc--eEEEEEeCCCcEEEeeccCCCCCcc------------------cccc--------------ccccccCCccceE
Q psy17342 178 TQNA--HNLISISNDGRLCSWSLEMLSSPQE------------------TRDL--------------QYNNKQTKNLAVL 223 (401)
Q Consensus 178 ~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~------------------~~~~--------------~~~~~~~~~~~v~ 223 (401)
+|++ ..|++++.|+.|++||+........ ...+ ......+|...|.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 7777 7999999999999999874211000 0000 0000245889999
Q ss_pred EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee-------eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-------CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL 296 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i 296 (401)
+++|+ +++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|+. ..+|++|+.|+.|++
T Consensus 182 ~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 182 SISIN-SDYETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNS-----CNTFVYSSSKGTIRL 253 (447)
T ss_dssp EEEEC-TTSSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSC-----TTEEEEEETTSCEEE
T ss_pred EEEEc-CCCCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCC-----CcEEEEEeCCCeEEE
Confidence 99999 789999998 79999999997322 1222 356899999999999982 289999999999999
Q ss_pred EEeeCCCc----eEEEeecCC------------ceEEEEECCCCCcEEEEEecCCEEEEEeCCC-CCCCcceEEeecCCC
Q psy17342 297 WNIKENKP----VHSFNEFRD------------YVMDVQWSPINPALFATVEVAGRVDLWNLNL-DTEVPATSAIVEGAP 359 (401)
Q Consensus 297 wd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 359 (401)
||+++++. +..+..|.. .|.+++|+|+++ +|++++. +.|++||++. ++.+..+. .|..
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~ 328 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQ---VHEY 328 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEE---SCGG
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceee---cccc
Confidence 99999887 788888776 899999999997 7888887 9999999987 66555554 2221
Q ss_pred ---------------CeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 360 ---------------ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 360 ---------------~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
.+..++|+|++++|++|+.||.|++||+.+++.
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 133499999999999999999999999998853
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-35 Score=282.08 Aligned_cols=261 Identities=17% Similarity=0.211 Sum_probs=210.1
Q ss_pred EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCC
Q psy17342 114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDG 191 (401)
Q Consensus 114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg 191 (401)
..+|.+.|++++|+|++ .+|++|+.||.|++||+........ ..+.+|.++|.+++| +++ +.+|++++.||
T Consensus 5 l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~----~~l~~h~~~V~~l~~--s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDW--AHPKFGTILASCSYDG 77 (753)
T ss_dssp ---CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCTTSCSEEEEEETTS
T ss_pred cccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccc----eeccCCcCceEEEEe--cCCCCCCEEEEEeCCC
Confidence 34689999999999987 6889999999999999975432221 345789999999999 666 89999999999
Q ss_pred cEEEeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342 192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269 (401)
Q Consensus 192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (401)
.|++||+.... ...... ...|...|.+++|+ |+ +..+++|+.||.|++||++.........+.+|...|.+
T Consensus 78 ~I~vwd~~~~~-~~~~~~-----~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 78 KVLIWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp CEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred eEEEEECCCCc-cccccc-----ccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 99999998521 111222 34488899999999 67 89999999999999999987655556677889999999
Q ss_pred eecCccCCC--------CCCCcEEEEEeCCCeEEEEEeeCC----CceEEEeecCCceEEEEECCC---CCcEEEEEecC
Q psy17342 270 LSSHRAQGH--------IDFSHLYLTSSYDWSVKLWNIKEN----KPVHSFNEFRDYVMDVQWSPI---NPALFATVEVA 334 (401)
Q Consensus 270 i~~~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~---~~~~l~~~~~d 334 (401)
+.|+|.... ++ +.++++|+.||.|++||++++ .+...+.+|...|.+++|+|+ +. ++++++.|
T Consensus 151 l~~~p~~~~~~~~~~~~~d-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~D 228 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQD 228 (753)
T ss_dssp EEECCCC---------CGG-GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESS
T ss_pred EEecCcccccccccccCCC-CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecC
Confidence 999994000 00 689999999999999999987 455677789999999999999 65 89999999
Q ss_pred CEEEEEeCCCCCCCcc--eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 335 GRVDLWNLNLDTEVPA--TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 335 ~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
|.|++||+.++..... ......+...|++++|+|+|++|++++.||.|++|++.++
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999988642211 1111346778999999999999999999999999999854
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=280.59 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=206.8
Q ss_pred ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCC-CceEEEEecC
Q psy17342 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFN-PYLILGGTYS 140 (401)
Q Consensus 63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~g~~d 140 (401)
+|.+.|++++|+|++++|++++ .||.|+|||+.++....... ..|.++|++++|+|+. ..+|++|+.|
T Consensus 7 gH~~~V~~l~~s~dg~~latg~----------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEE----------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred cCcceeEEEEECCCCCeEEEEE----------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 5789999999999999999999 79999999998433222222 3478999999999862 4799999999
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
|.|++||+.++..... ..+..|...|.+++| +|+ +..+++++.||.|++||++..... .... ..+|
T Consensus 77 g~I~vwd~~~~~~~~~----~~~~~h~~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-~~~~-----~~~~ 144 (753)
T 3jro_A 77 GKVLIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTT-SPII-----IDAH 144 (753)
T ss_dssp SCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCC-CCEE-----EECC
T ss_pred CeEEEEECCCCccccc----ccccCCCCCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCc-ceeE-----eecC
Confidence 9999999988652222 234689999999999 787 899999999999999999863221 2222 2347
Q ss_pred ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342 219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284 (401)
Q Consensus 219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 284 (401)
...|.+++|+|. ++..+++|+.||.|++||++.... .....+.+|..+|++++|+|+... +.+
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~---~~~ 221 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL---RSY 221 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS---SEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC---CCE
Confidence 889999999943 589999999999999999975432 345677899999999999997200 279
Q ss_pred EEEEeCCCeEEEEEeeCCC-----ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 285 YLTSSYDWSVKLWNIKENK-----PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 285 l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
|++++.||.|++||+++++ .+.....|...|.+++|+|+++ ++++++.||.|++||+..
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence 9999999999999998864 3333445888999999999997 789999999999999984
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.6e-34 Score=254.42 Aligned_cols=296 Identities=14% Similarity=0.134 Sum_probs=197.9
Q ss_pred cceEEEEe---cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--------CceEEEecCCCeeEEEEeC------
Q psy17342 66 RNVTYMDW---STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--------TPEFEFFCQSPVLSCCFAK------ 128 (401)
Q Consensus 66 ~~v~~~~~---~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~------ 128 (401)
....++.| +|++..+++++ .++.|.+|+...... .......+...+..+.|++
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG----------HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE 85 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE----------ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC
T ss_pred CCCeEEEEeCCCCCCCCEEEEE----------CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc
Confidence 34556666 45666677777 488999998643211 1111223445555555543
Q ss_pred -------------CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee------cCCceEEEEEeC
Q psy17342 129 -------------FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG------TQNAHNLISISN 189 (401)
Q Consensus 129 -------------~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l~s~~~ 189 (401)
....+|++|+.|++|+|||.+.+...... ....+.+|.+.|++++|.+ ..++++|++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~-~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH-VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee-eecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 22357999999999999999877543211 1134679999999999932 127899999999
Q ss_pred CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-------------
Q psy17342 190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN------------- 256 (401)
Q Consensus 190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~------------- 256 (401)
|++|++||++... ....+ ..|...+.+++|+|.+..+|++|+.|+.|++||++......
T Consensus 165 D~tv~~Wd~~~~~---~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 165 DCTLIIWRLTDEG---PILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp TSEEEEEEEETTE---EEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred CCeEEEEECCCCc---eeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 9999999997522 22222 23778999999995455689999999999999987543210
Q ss_pred ----------eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC----
Q psy17342 257 ----------VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP---- 322 (401)
Q Consensus 257 ----------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~---- 322 (401)
.....+|...+.++.|.+.. +..+++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d-----g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSD-----GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTT-----TCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred EecccccceeeeecccccccceeeeeecCC-----CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence 01123677888999987433 78999999999999999988877776666655554444433
Q ss_pred ---------------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 323 ---------------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 323 ---------------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
.+..++++|+.||.|++||+.++...... ..|..+|++++|+|||++||+++.+| +.+|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 23346778889999999999988765443 46778999999999999999998776 778877
Q ss_pred cc
Q psy17342 388 GE 389 (401)
Q Consensus 388 ~~ 389 (401)
..
T Consensus 388 ~g 389 (393)
T 4gq1_A 388 MG 389 (393)
T ss_dssp GG
T ss_pred eC
Confidence 54
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.8e-34 Score=258.86 Aligned_cols=268 Identities=15% Similarity=0.250 Sum_probs=213.6
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
+..+++|+.||.|++||......+ ..+ ..|...|.+++| +++.|++++
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~~~------------------------~~~----~~h~~~v~~l~~--~~~~l~sg~-- 190 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLECK------------------------RIL----TGHTGSVLCLQY--DERVIITGS-- 190 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEE------------------------EEE----CCCSSCEEEEEC--CSSEEEEEE--
T ss_pred CCEEEEEeCCCeEEEEeCCCCeEE------------------------EEE----cCCCCcEEEEEE--CCCEEEEEc--
Confidence 568999999999999997654411 001 146688999999 677899999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 166 (401)
.||.|++||+.+++....+ ..|...|.+++|++ .++++|+.||.|++||+.+....... ..+.+|
T Consensus 191 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~ 255 (435)
T 1p22_A 191 --------SDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR---RVLVGH 255 (435)
T ss_dssp --------TTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE---EEECCC
T ss_pred --------CCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee---eEecCC
Confidence 7999999999987765443 35788999999974 58999999999999999887654221 224689
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
...|.+++| ++.++++++.||.|++||+++.. .... ..+|...|.+++++ +..+++|+.||.|++
T Consensus 256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~---~~~~-----~~~~~~~v~~~~~~---~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE---FVRT-----LNGHKRGIACLQYR---DRLVVSGSSDNTIRL 320 (435)
T ss_dssp SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCC---EEEE-----EECCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCc---EEEE-----EcCCCCcEEEEEeC---CCEEEEEeCCCeEEE
Confidence 999999998 67899999999999999998632 2222 23478899999985 579999999999999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---------ceEEEeecCCceEE
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK---------PVHSFNEFRDYVMD 317 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~ 317 (401)
||++. ...+..+.+|...|.++++. +.+|++|+.||.|++||+++++ ++..+..|.+.|.+
T Consensus 321 wd~~~--~~~~~~~~~h~~~v~~~~~~--------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 321 WDIEC--GACLRVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp EETTT--CCEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred EECCC--CCEEEEEeCCcCcEEEEEec--------CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 99984 45788899999999999993 6899999999999999998766 78889999999999
Q ss_pred EEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
++| ++. +|++++.||.|++||+.+.....
T Consensus 391 l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 391 LQF--DEF-QIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp EEE--CSS-CEEECCSSSEEEEEC--------
T ss_pred EEe--CCC-EEEEEeCCCEEEEEECCCCCCcc
Confidence 999 554 68999999999999998765443
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.4e-34 Score=249.11 Aligned_cols=275 Identities=11% Similarity=0.152 Sum_probs=220.6
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCC-Ce
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHP-EL 80 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 80 (401)
.|..-+..+++|+.||.+++|+....... ... ... ..|...|.+++|+|+++ .|
T Consensus 18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~-~~~----~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDL-LQS----LRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEE-EEE----EECSSCEEEEEEEESSSEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccc-eee----eecCCceEEEEECCCCCcEE
Confidence 46667889999999999999998655310 000 111 14668899999999999 89
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeC-cCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-------
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNT-KFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV------- 150 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~------- 150 (401)
++++ .|+.|++||+ .+++. ..... |...|.+++|+| + .++++++.|+.|++||+++
T Consensus 73 ~~~~----------~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 73 YVGT----------VQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EEEE----------TTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred EEEc----------CCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccccccccccc
Confidence 9999 7999999999 76543 23344 788999999999 5 7899999999999999986
Q ss_pred --CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC-CCCCccccccccccccCCccceEEEEe
Q psy17342 151 --QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-LSSPQETRDLQYNNKQTKNLAVLSLAF 227 (401)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (401)
.+.. ....|...|.+++| ++++ +++++.|+.|++||++. ........ ...+...+.+++|
T Consensus 139 ~~~~~~-------~~~~~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 139 VKNLNS-------NNTKVKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE------ESGLKYQIRDVAL 201 (342)
T ss_dssp EEESCS-------SSSSSCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEE------ECSCSSCEEEEEE
T ss_pred ccCCee-------eEEeeCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceee------ecCCCCceeEEEE
Confidence 4322 12348899999999 7666 99999999999999985 33222111 2236778999999
Q ss_pred ccC-CCCeEEEEcCCceEEEEeCCCC--C--CCceeeecCCCC---------ceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342 228 PQN-DVNNFVVGCEDGNVYSACRHGN--K--AGNVECYEGHEG---------PVVGLSSHRAQGHIDFSHLYLTSSYDWS 293 (401)
Q Consensus 228 ~~~-~~~~l~~~~~d~~i~~~~~~~~--~--~~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~l~s~~~d~~ 293 (401)
+ + +++++++++.||.|++|+++.. . ......+..|.. +|.+++|+|+ +++|++++.||.
T Consensus 202 ~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~ 274 (342)
T 1yfq_A 202 L-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGI 274 (342)
T ss_dssp C-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSC
T ss_pred C-CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC------CCEEEEecCCce
Confidence 9 7 8999999999999999998754 1 245677777765 9999999998 789999999999
Q ss_pred EEEEEeeCCCceEEEeec-CCceEEEEECCCCCcEEEEEecCCE-EEEEeC
Q psy17342 294 VKLWNIKENKPVHSFNEF-RDYVMDVQWSPINPALFATVEVAGR-VDLWNL 342 (401)
Q Consensus 294 i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~~d~~-i~iwd~ 342 (401)
|++||+.+++++..+..| ...|.+++ |+++ +|++++.||. .+.+..
T Consensus 275 i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 275 ISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred EEEEcCccHhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence 999999999999999998 99999999 9987 8999999998 555543
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-35 Score=261.22 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=222.9
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccc---cccccCCCCCCCCCceeeeeee--ccccccccceEEEEecCC
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQD---LQFDMTGDEKSSTKLSFCRQFF--DEKWSKNRNVTYMDWSTQ 76 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~ 76 (401)
+|+.-|..+||++.|++|| |....+.+..-+.. .+|...+ ....+.++...- .....|...|.+++|||+
T Consensus 22 ~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg---~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE---FENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC---CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred EECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC---CcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 6888999999999999999 54333333110111 1133333 233333332211 112245688999999999
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-----CeeEEEEeCCCCceEEEEecCCeEEEEECCCC
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-----PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ 151 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~ 151 (401)
|+.||+++ .||.|+|||.++ .+..+ .|.. .|.+++|||+| ++|++|+.||+|+|||+.++
T Consensus 97 G~~LAs~s----------~dg~V~iwd~~~--~l~~l--~~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 97 DDWMAVLS----------NNGNVSVFKDNK--MLTNL--DSKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SSCEEEEE----------TTSCEEEEETTE--EEEEC--CCSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCC
T ss_pred CCEEEEEe----------CCCcEEEEeCCc--eeeec--cCCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCC
Confidence 99999999 899999999653 22222 2333 59999999987 89999999999999999886
Q ss_pred CCCc-----eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342 152 KKTP-----VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226 (401)
Q Consensus 152 ~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (401)
.... .........+|...|.+++| +|++ +++++.|+++++|++...........+. .+|...|.+++
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVaw--SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sva 233 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVW--YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDLK 233 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEE--ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCEE
T ss_pred ccccccceeeeeeecccccccccEEEEEE--cCCc--EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEEE
Confidence 5311 11111123678899999999 8998 8899999999999997532110011121 23778899999
Q ss_pred eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec--CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS--HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304 (401)
Q Consensus 227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 304 (401)
|+ ++.+++++ ++.|++|+..+.. ......+|...|.++++ +|+ +..+++++.||+ ++|...
T Consensus 234 Fs---g~~LASa~-~~tIkLWd~~~~~--~~~~~~gh~~~V~~va~~~s~d------~~~La~a~edG~-klw~~d---- 296 (588)
T 2j04_A 234 IV---DYKVVLTC-PGYVHKIDLKNYS--ISSLKTGSLENFHIIPLNHEKE------STILLMSNKTSY-KVLLED---- 296 (588)
T ss_dssp EE---TTEEEEEC-SSEEEEEETTTTE--EEEEECSCCSCCCEEEETTCSS------CEEEEECSSCEE-EEEESS----
T ss_pred EE---CCEEEEEe-CCeEEEEECCCCe--EEEEEcCCCceEEEEEeeeCCC------CCEEEEEcCCCC-EEEeec----
Confidence 98 47888887 6999999997543 21223389999999999 888 789999999999 999986
Q ss_pred eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342 305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378 (401)
Q Consensus 305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 378 (401)
.++++|++. ++++ .|+++++|+...+. ...+ .+...|.+++|||||+.+|+++.
T Consensus 297 ------------~~~~spd~~-l~a~--~d~~v~lW~~~g~~-l~~~----~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ------------ELHVTADNI-IAPY--LEKKFKKWSTIWNE-FNNY----ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ------------SEEEECCCS-SHHH--HHHHHHHTTTTTTS-SSSS----CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ------------cEEECCCce-EEEE--cCCEEEEEECCCCc-eeee----ccceEEEEEEECCCCCEEEEEEe
Confidence 266999996 5554 49999999986543 2322 33556999999999999998864
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=250.32 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=209.0
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
..+.+++..|++|+ .||.|++||+.+++.+..+. ...|.++.|+|. +++|+.|++|++|+...
T Consensus 42 ~~~~~d~~~l~sg~----------~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRC----------EDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSSEEEEEEEEEE----------ETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTT
T ss_pred hhhcCCCCEEEEEC----------CCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccC
Confidence 34556788899999 79999999999887665554 467888889885 88999999999998764
Q ss_pred CC------CCceeeccccccCCCCcEEEEEEeecC--CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 151 QK------KTPVHRTPLSVMAHTHPVFCMSVIGTQ--NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 151 ~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
.. ...... .....|.++|.+++| +| ++.++++++.||+|++||++.... ... . ...+...+
T Consensus 105 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~--~----~~~~~~~i 173 (343)
T 3lrv_A 105 QITILDSKTNKVLR--EIEVDSANEIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIV--H----SAKSDVEY 173 (343)
T ss_dssp EEEEEETTTCCEEE--EEECCCSSCEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCE-EEE--E----CCCSSCCC
T ss_pred ceEEeecCCcceeE--EeecCCCCCEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcE-EEE--E----ecCCCCce
Confidence 21 111011 112367789999999 88 999999999999999999986322 111 1 12255579
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCce-eeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV-ECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 300 (401)
.+++|+ |++.+|++|+.||.|++||++... .. ..+.. |.++|++++|+|+ +.+|++++ |+.|++||++
T Consensus 174 ~~~~~~-pdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 174 SSGVLH-KDSLLLALYSPDGILDVYNLSSPD--QASSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp CEEEEC-TTSCEEEEECTTSCEEEEESSCTT--SCCEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETT
T ss_pred EEEEEC-CCCCEEEEEcCCCEEEEEECCCCC--CCccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcC
Confidence 999999 899999999999999999998544 34 56777 9999999999998 79999999 5599999999
Q ss_pred CCCceEEEee---cCCceE--EEEECCCCCcEEEEEec-CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC---CCc
Q psy17342 301 ENKPVHSFNE---FRDYVM--DVQWSPINPALFATVEV-AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP---NGT 371 (401)
Q Consensus 301 ~~~~~~~~~~---~~~~v~--~v~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~ 371 (401)
+++.+..+.. |...+. +++|+|+++ +|++++. |+.|++|++......... .++..++|++ +++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTADFT 315 (343)
T ss_dssp SSTTCBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CCCC
T ss_pred CCCcceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCccccccc
Confidence 9877655443 333443 699999998 7888777 999999999765533221 4577889998 889
Q ss_pred EEEEEecCCcEEEEEeccCc
Q psy17342 372 QLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 372 ~l~~~~~dg~v~iw~~~~~~ 391 (401)
.|++++.||.+.++-.....
T Consensus 316 ~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EEEEEEETTEEEEEEECSSE
T ss_pred eeEEEecCCceEEEEecCCe
Confidence 99999999999988766654
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=249.34 Aligned_cols=275 Identities=15% Similarity=0.212 Sum_probs=211.7
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
+..+++|+.||.+++|+...... .+...+ ..|...|.+++|+|++++|++++
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~----------------------~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~-- 105 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQ----------------------TIPKAQ----QMHTGPVLDVCWSDDGSKVFTAS-- 105 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSC----------------------EEEEEE----EECSSCEEEEEECTTSSEEEEEE--
T ss_pred ceEEEEECCCCcEEEEEcCCCCc----------------------eeEEEe----ccccCCEEEEEECcCCCEEEEEc--
Confidence 58999999999999999875320 000111 13668899999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE--eCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF--AKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM 164 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~ 164 (401)
.|+.|++||+.+++... ...|...|.+++| +|++ .+|++++.||.|++||+++++.... +.
T Consensus 106 --------~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~------~~ 168 (368)
T 3mmy_A 106 --------CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMV------LQ 168 (368)
T ss_dssp --------TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEE------EE
T ss_pred --------CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEE------Ee
Confidence 79999999999766443 4568999999999 7765 7899999999999999998765432 22
Q ss_pred CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCe----EEEEcC
Q psy17342 165 AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN----FVVGCE 240 (401)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~ 240 (401)
.+ ..+.++.+ . ...+++++.++.+.+|+++.......... ......+.++++. ++... +++++.
T Consensus 169 ~~-~~~~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 169 LP-ERCYCADV--I--YPMAVVATAERGLIVYQLENQPSEFRRIE------SPLKHQHRCVAIF-KDKQNKPTGFALGSI 236 (368)
T ss_dssp CS-SCEEEEEE--E--TTEEEEEEGGGCEEEEECSSSCEEEEECC------CSCSSCEEEEEEE-ECTTSCEEEEEEEET
T ss_pred cC-CCceEEEe--c--CCeeEEEeCCCcEEEEEeccccchhhhcc------ccccCCCceEEEc-ccCCCCCCeEEEecC
Confidence 33 46677766 3 44788899999999999975322211111 1133345555554 33333 999999
Q ss_pred CceEEEEeCCCCCC-CceeeecCCCC------------ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE
Q psy17342 241 DGNVYSACRHGNKA-GNVECYEGHEG------------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS 307 (401)
Q Consensus 241 d~~i~~~~~~~~~~-~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 307 (401)
|+.|++|+++.... .....+.+|.. +|++++|+|+ +++|++++.||.|++||+++++++..
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV------HGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT------TCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC------CCEEEEEccCCeEEEEECCCCcEEEE
Confidence 99999999986533 45667777776 7999999998 78999999999999999999999999
Q ss_pred EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 308 FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 308 ~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+..|...|.+++|+|+++ +|++++.|+..+.|++...
T Consensus 311 ~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp CCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGGGCCT
T ss_pred ecCCCCCceEEEECCCCC-eEEEEecccccccccccCC
Confidence 999999999999999997 7888888886666655443
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.2e-33 Score=246.05 Aligned_cols=299 Identities=12% Similarity=0.138 Sum_probs=204.5
Q ss_pred CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC--CCC
Q psy17342 1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST--QHP 78 (401)
Q Consensus 1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 78 (401)
|.|..-+..+++|+.||.+++|++....... .....+ ..|...|.+++|+| +++
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~----~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNW--------------------ELSDSW----RAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCCE--------------------EEEEEE----ECCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCcc--------------------eeccee----ccCCCcEEEEEEcCCCCCC
Confidence 3566678899999999999999987554111 111111 14668999999999 588
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC--------ceEEEecCCCeeEEEEeCC--CCceEEEEecCCeEEEEEC
Q psy17342 79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT--------PEFEFFCQSPVLSCCFAKF--NPYLILGGTYSGQIVLWDT 148 (401)
Q Consensus 79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~ 148 (401)
+|++++ .|+.|++||+.++... ......|...|.+++|+|+ + .++++++.||.|++||+
T Consensus 73 ~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 73 IIASAS----------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEEEE----------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEEC
T ss_pred EEEEEc----------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecC
Confidence 999999 7999999999875421 1122347889999999997 5 78999999999999999
Q ss_pred CCCCCCceee-------ccccccCCCCcEEEEEEeecCC---ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 149 RVQKKTPVHR-------TPLSVMAHTHPVFCMSVIGTQN---AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 149 ~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
++.+...... .......|...+.+++| +|+ +..+++++.|+.+.+|+... ........ ..+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~h 213 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAK-----LPGH 213 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEE-----CCCC
T ss_pred CChHHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCC-Cceeeeee-----cCCC
Confidence 8876543211 11122378889999999 776 88999999999997777654 22212222 3458
Q ss_pred ccceEEEEeccCCC----CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE----EEeC
Q psy17342 219 NLAVLSLAFPQNDV----NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL----TSSY 290 (401)
Q Consensus 219 ~~~v~~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~----s~~~ 290 (401)
...|++++|+ +++ .+|++|+.||.|++||++.... ......+...+......+. ...+. .+..
T Consensus 214 ~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 214 KSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLS--PLASEESLTNSNMFDNSAD------VDMDAQGRSDSNT 284 (351)
T ss_dssp CSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred CcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcC--ccccCCcccceeccCCCcc------ccccccccccccc
Confidence 8899999999 676 7999999999999999974322 2222222222223333322 12222 2334
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 352 (401)
...+.+|+....+++..+.+|...|++++|+|+++ +|++++.||.|++||+.+++....+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp ------CCSEEEEEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ceeeeecccccccEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCcchhhee
Confidence 55677787777888889999999999999999997 89999999999999999877654443
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.1e-32 Score=244.09 Aligned_cols=315 Identities=10% Similarity=0.051 Sum_probs=227.7
Q ss_pred ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342 8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87 (401)
Q Consensus 8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 87 (401)
..+++++.|+.+++||....+.+. .+ .+...+.+++|+|+++.+++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~------------------------~~-----~~~~~~~~~~~s~dg~~l~~~~--- 50 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA------------------------TI-----PVGSNPMGAVISPDGTKVYVAN--- 50 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE------------------------EE-----ECSSSEEEEEECTTSSEEEEEE---
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE------------------------Ee-----ecCCCcceEEECCCCCEEEEEC---
Confidence 457889999999999986554110 01 1224589999999999885555
Q ss_pred CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342 88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT 167 (401)
Q Consensus 88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 167 (401)
+.++.|++||+.+++....+ .+...+.+++|+|++..++++++.++.|++||+.+++.... ..+.
T Consensus 51 ------~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-------~~~~ 115 (391)
T 1l0q_A 51 ------AHSNDVSIIDTATNNVIATV--PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------VKTG 115 (391)
T ss_dssp ------GGGTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------EECS
T ss_pred ------CCCCeEEEEECCCCeEEEEE--ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-------EeCC
Confidence 26899999999877665443 33459999999998865667777789999999988764322 2244
Q ss_pred CcEEEEEEeecCCceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCCceEE
Q psy17342 168 HPVFCMSVIGTQNAHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCEDGNVY 245 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~ 245 (401)
..+.+++| +++++.+ ++++.|+.|++||+.... ... .+. ....+.+++|+ ++++.+ ++++.++.|+
T Consensus 116 ~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~--~~~------~~~~~~~~~~~-~dg~~l~~~~~~~~~v~ 183 (391)
T 1l0q_A 116 KSPLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKA-VIN--TVS------VGRSPKGIAVT-PDGTKVYVANFDSMSIS 183 (391)
T ss_dssp SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-EEE--EEE------CCSSEEEEEEC-TTSSEEEEEETTTTEEE
T ss_pred CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCc-EEE--EEe------cCCCcceEEEC-CCCCEEEEEeCCCCEEE
Confidence 57899999 8999877 688889999999987521 111 111 23457899999 777776 6778899999
Q ss_pred EEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe---CCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342 246 SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS---YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322 (401)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 322 (401)
+||++.. +....+. +...+.+++|+|+ ++++++++ .++.|++||+++++++..+..|. .+.+++|+|
T Consensus 184 ~~d~~~~--~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 184 VIDTVTN--SVIDTVK-VEAAPSGIAVNPE------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp EEETTTT--EEEEEEE-CSSEEEEEEECTT------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred EEECCCC--eEEEEEe-cCCCccceEECCC------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 9999754 3444444 5678899999998 67777777 68999999999999888888755 578999999
Q ss_pred CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC------------CCCeEEEEecCCC----------cEEEEEecCC
Q psy17342 323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG------------APALSRVTWTPNG----------TQLCVGDEKG 380 (401)
Q Consensus 323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~v~~~~~s~~g----------~~l~~~~~dg 380 (401)
+++.++++++.|+.|++||+.+++....+...... ........|+.+. ..+...+.|.
T Consensus 254 dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~ 333 (391)
T 1l0q_A 254 DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDA 333 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSC
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCc
Confidence 99866688889999999999987654443211000 0000111222221 3456667788
Q ss_pred cEEEEEeccCc
Q psy17342 381 AITMFDVGEVG 391 (401)
Q Consensus 381 ~v~iw~~~~~~ 391 (401)
.+++|++.++.
T Consensus 334 ~~~~W~~~~g~ 344 (391)
T 1l0q_A 334 TEWKWDFGDGS 344 (391)
T ss_dssp SEEEEECSSSC
T ss_pred eEEEEECCCCc
Confidence 99999998764
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.8e-32 Score=245.10 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=215.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE----EecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE----FFCQSPVLSCCFAKFNPYLILGGTYSG 141 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~g~~dg 141 (401)
..+.+++|+|++..+++++ .++.|++||+.+++...... ..|...|.+++|+|++ .++++++.|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~----------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~ 191 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLL----------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQAN 191 (433)
T ss_dssp SCBCCCEESSSSEEEEEBT----------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGT
T ss_pred CCceEEEEeCCCeEEEEeC----------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCC
Confidence 4567999999554444444 68899999999776543211 1356789999999876 7999999999
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
.|++||+++++... .+..|...+.+++| ++++..++ +++.|+.|++||++... ... .+. ...
T Consensus 192 ~v~~~d~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~--~~~------~~~ 254 (433)
T 3bws_A 192 AVHVFDLKTLAYKA------TVDLTGKWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKL-EIR--KTD------KIG 254 (433)
T ss_dssp EEEEEETTTCCEEE------EEECSSSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTE-EEE--ECC------CCS
T ss_pred EEEEEECCCceEEE------EEcCCCCCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCc-EEE--Eec------CCC
Confidence 99999998766432 23578889999999 88888775 55589999999997522 111 111 234
Q ss_pred ceEEEEeccCCCCeEEEEc--------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342 221 AVLSLAFPQNDVNNFVVGC--------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~--------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~ 292 (401)
.+.+++|+ ++++.+++++ .|+.|++||+...+ .+..+ .|...+.+++|+|+. ..++++++.|+
T Consensus 255 ~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~~~~~~~~~~g-----~~l~~~~~~~~ 325 (433)
T 3bws_A 255 LPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTI-GPPGNKRHIVSGNTE-----NKIYVSDMCCS 325 (433)
T ss_dssp EEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEE-EEEECEEEEEECSST-----TEEEEEETTTT
T ss_pred CceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeec-cCCCCcceEEECCCC-----CEEEEEecCCC
Confidence 58999999 7888888887 58999999997442 33333 466688999999983 34667778899
Q ss_pred eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---------------CCEEEEEeCCCCCCCcceEEeecC
Q psy17342 293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---------------AGRVDLWNLNLDTEVPATSAIVEG 357 (401)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~ 357 (401)
.|++||+.+++.+..+. +...+.+++|+|+++ ++++++. ||.|++||+.+++....+ .+
T Consensus 326 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~ 399 (433)
T 3bws_A 326 KIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA 399 (433)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC
T ss_pred EEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC
Confidence 99999999888887776 577899999999998 5555554 579999999887654443 33
Q ss_pred CCCeEEEEecCCCcEEEEEec-CCcEEEEEecc
Q psy17342 358 APALSRVTWTPNGTQLCVGDE-KGAITMFDVGE 389 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~ 389 (401)
...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 567999999999999988875 99999999864
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=243.27 Aligned_cols=253 Identities=12% Similarity=0.103 Sum_probs=198.5
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCC---CCceeecc----------------------------------
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK---KTPVHRTP---------------------------------- 160 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~---~~~~~~~~---------------------------------- 160 (401)
..++.+++|+|++ ++|+++ .++.|++||+.+++ ........
T Consensus 4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 3578999999988 466665 58899999998876 22111100
Q ss_pred --------------ccccCCCCcEEEEEEeecCCceEE-EEEeCCCcEEEeecc--CCCCCccccccccccccCCccceE
Q psy17342 161 --------------LSVMAHTHPVFCMSVIGTQNAHNL-ISISNDGRLCSWSLE--MLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 161 --------------~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
.....|.+.|.+++| +|++.+| ++++.||.|++||+. . +.....+.. ..+...|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~-----~~~~~~v~ 153 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKR-----FCFSKRPN 153 (450)
T ss_dssp ------------------CCCCCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEE-----EECSSCEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeec-----ccCCCCce
Confidence 001245668999999 9999996 899999999999997 4 222222211 12567899
Q ss_pred EEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecCcc-CCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRA-QGHIDFSHLYLTSSYDWSVKLWNIK 300 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~ 300 (401)
+++|+ +++.+|++|+.+|.|++|++...... ....+.+|...|++++|+|+ .. +.+|++++.|+.|++||++
T Consensus 154 ~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~----~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 154 AISIA-EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDG----HQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EEEEC-TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTS----CEEEEEEETTSCEEEEEES
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCC----CcEEEEEcCCCcEEEEECC
Confidence 99999 89999999999999999998754322 33467789999999999997 11 4799999999999999999
Q ss_pred CCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------------------cC
Q psy17342 301 ENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------------------EG 357 (401)
Q Consensus 301 ~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------~~ 357 (401)
+++.+.. +.+|...|.+++|+ ++. +|++++.|+.|++||+.+++.+..+.... ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred CCceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 9988887 55899999999999 887 89999999999999999887655443210 22
Q ss_pred CCCeEEEEecCCCcEEEEEe-cCCcEEEEEe
Q psy17342 358 APALSRVTWTPNGTQLCVGD-EKGAITMFDV 387 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~ 387 (401)
...|..++|+|++++|++++ .|+.|++|++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 35689999999999999998 8999999999
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.9e-33 Score=246.45 Aligned_cols=257 Identities=11% Similarity=0.043 Sum_probs=174.3
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeC--------CCC
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAK--------FNP 131 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~--------~~~ 131 (401)
|...+....+++++..|++++ .|++|+|||.+++.......+ +|.+.|++++|+| ++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~----------~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~- 156 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVC----------QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE- 156 (393)
T ss_dssp ---------CCEEEEEEEEEE----------TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-
T ss_pred cCCCcceeecCCCCCEEEEEe----------CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-
Confidence 344455566677777888888 899999999987654433322 4789999999998 44
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDL 210 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 210 (401)
++|++|+.|++|+|||+.+.... ..+..|..+|.+++| +|++ .+|++++.|++|++||++...........
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~------~~~~~~~~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPI------LAGYPLSSPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEE------EEEEECSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred CEEEEEECCCeEEEEECCCCcee------eeecCCCCCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 79999999999999999776532 234678899999999 8877 48999999999999999764322111100
Q ss_pred c-----------------cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342 211 Q-----------------YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 211 ~-----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 273 (401)
. .....+|...+.++.|.++++..+++++.|+.+++||+.... ....+..|...+..+.+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~--~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN--DYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCS
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC--CCceEeeecCccccEEEc
Confidence 0 001245777889999987899999999999999999987433 233444444444444333
Q ss_pred ccCCC--------------CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342 274 RAQGH--------------IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL 339 (401)
Q Consensus 274 ~~~~~--------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~i 339 (401)
|+... ...+.++++|+.|++|++||+.+++++..+..|..+|.+++|+|+|+ +||+++.+| +.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~l 384 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLL 384 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEE
Confidence 32100 00045677888899999999999999999999999999999999998 789888655 667
Q ss_pred EeCC
Q psy17342 340 WNLN 343 (401)
Q Consensus 340 wd~~ 343 (401)
|.+.
T Consensus 385 vrL~ 388 (393)
T 4gq1_A 385 TRLM 388 (393)
T ss_dssp EEEG
T ss_pred EEEe
Confidence 7664
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-30 Score=232.93 Aligned_cols=266 Identities=10% Similarity=0.073 Sum_probs=202.7
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS 174 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (401)
.|+.|++||+++++....+ .+...+.+++|+|++..++++++.++.|++||+.+++.... +. +...+.+++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------~~-~~~~v~~~~ 80 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------VP-AGSSPQGVA 80 (391)
T ss_dssp TTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------EE-CSSSEEEEE
T ss_pred CCCEEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------EE-CCCCccceE
Confidence 7999999999977655433 34567999999998865668888999999999988764322 22 333899999
Q ss_pred EeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCC
Q psy17342 175 VIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGN 252 (401)
Q Consensus 175 ~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~ 252 (401)
| +|++.+++ +++.++.|++||+.... ... .+. +...+.+++|+ ++++.+ ++++.++.|++||+...
T Consensus 81 ~--spdg~~l~~~~~~~~~v~v~d~~~~~-~~~--~~~------~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 81 V--SPDGKQVYVTNMASSTLSVIDTTSNT-VAG--TVK------TGKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTE-EEE--EEE------CSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTT
T ss_pred E--CCCCCEEEEEECCCCEEEEEECCCCe-EEE--EEe------CCCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 9 89998775 45567999999997522 111 111 33468999999 788766 78888999999998743
Q ss_pred CCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342 253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV 331 (401)
Q Consensus 253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~ 331 (401)
+.+..+..+ ..+.+++|+|+ ++.+ ++++.++.|++||+++++.+..+.. ...+.+++|+|+++ +++++
T Consensus 149 --~~~~~~~~~-~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~-~l~~~ 217 (391)
T 1l0q_A 149 --AVINTVSVG-RSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGT-KAYVT 217 (391)
T ss_dssp --EEEEEEECC-SSEEEEEECTT------SSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSS-EEEEE
T ss_pred --cEEEEEecC-CCcceEEECCC------CCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCC-EEEEE
Confidence 345566655 45689999998 5555 6778899999999999887777764 66889999999998 45555
Q ss_pred e---cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE-EEEecCCcEEEEEeccCccceeeee
Q psy17342 332 E---VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL-CVGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 332 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
+ .++.|++||+.+++.+..+ .....+.+++|+|+|++| ++++.|+.|++||+.++ +.++.+
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~~ 282 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARI----PVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATM 282 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEE----ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEE----ecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEEE
Confidence 5 6899999999987644333 234568899999999877 66788999999999987 444444
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=234.64 Aligned_cols=267 Identities=10% Similarity=-0.003 Sum_probs=197.2
Q ss_pred hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342 6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY 85 (401)
Q Consensus 6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 85 (401)
-+..+++|+.||.|++||....+.+..+ . ...|.++.|+|+ +++++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~---------------------~---------~~~v~~~~~~~~---~~s~s- 92 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTI---------------------T---------TPNPRTGGEHPA---IISRG- 92 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEE---------------------E---------EECCCTTCCCCS---EEEEC-
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEE---------------------e---------cCCceeeeeCCc---eEEec-
Confidence 3567999999999999998766522111 0 155778889888 88887
Q ss_pred ccCCCCCCCCCcEEEEEeCc---------CCCCCceEEEecCCCeeEEEEeC--CCCceEEEEecCCeEEEEECCCCCCC
Q psy17342 86 HRNKEAPNEPDGVCLIWNTK---------FKKTTPEFEFFCQSPVLSCCFAK--FNPYLILGGTYSGQIVLWDTRVQKKT 154 (401)
Q Consensus 86 ~~~~~~~~~~d~~v~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~g~~dg~v~iw~~~~~~~~ 154 (401)
.|++|++|+.. +++.+......|..+|.+++|+| ++ .++++|+.||.|++||+++++..
T Consensus 93 ---------~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~ 162 (343)
T 3lrv_A 93 ---------PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY 162 (343)
T ss_dssp ---------STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE
T ss_pred ---------CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE
Confidence 79999999765 33334344445668899999999 77 78999999999999999987653
Q ss_pred ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC-CccceEEEEeccCCCC
Q psy17342 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT-KNLAVLSLAFPQNDVN 233 (401)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 233 (401)
.. ....|...|.+++| +|++.+|++|+.||.|++||++........ +.. |...|++++|+ +++.
T Consensus 163 ~~-----~~~~~~~~i~~~~~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~-------~~~~h~~~v~~l~fs-~~g~ 227 (343)
T 3lrv_A 163 IV-----HSAKSDVEYSSGVL--HKDSLLLALYSPDGILDVYNLSSPDQASSR-------FPVDEEAKIKEVKFA-DNGY 227 (343)
T ss_dssp EE-----ECCCSSCCCCEEEE--CTTSCEEEEECTTSCEEEEESSCTTSCCEE-------CCCCTTSCEEEEEEC-TTSS
T ss_pred EE-----EecCCCCceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCCCCccE-------EeccCCCCEEEEEEe-CCCC
Confidence 21 11356668999999 999999999999999999999864322122 223 78899999999 8999
Q ss_pred eEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCcee--eeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCCCceEEEe
Q psy17342 234 NFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVV--GLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKENKPVHSFN 309 (401)
Q Consensus 234 ~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~--~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 309 (401)
+|++++. +.|++||++..... .+..+..|..++. +++|+|+ +++|++++. |+.|++|++.+.......
T Consensus 228 ~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~l~~~s~~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 228 WMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS------GKNMIAYSNESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp EEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT------SSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred EEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCC------CCEEEEecCCCCcEEEEEEcccccceEe-
Confidence 9999994 59999999854321 1222333555555 5999998 799999998 999999999776554443
Q ss_pred ecCCceEEEEECC---CCCcEEEEEecCCEEEEEeCC
Q psy17342 310 EFRDYVMDVQWSP---INPALFATVEVAGRVDLWNLN 343 (401)
Q Consensus 310 ~~~~~v~~v~~~~---~~~~~l~~~~~d~~i~iwd~~ 343 (401)
.++..++|.| +.. .+++++.|+.+.++-..
T Consensus 300 ---~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 300 ---DEESALCLQSDTADFT-DMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---EEEEECCC----CCCC-EEEEEEETTEEEEEEEC
T ss_pred ---cCceeEecCccccccc-eeEEEecCCceEEEEec
Confidence 5678899998 776 68888889999887543
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=2.6e-30 Score=217.24 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=184.7
Q ss_pred ceEEEEecCCCC---CeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342 67 NVTYMDWSTQHP---ELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS 140 (401)
Q Consensus 67 ~v~~~~~~~~~~---~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d 140 (401)
.+.++-|-..+- .+++++ ...|++|+..++ +.+....+ |..+|..+.+.|+..+++..+-.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-----------~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-----------EDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGN 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-----------SSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECS
T ss_pred EEeeeeeccCCCCccEEEEec-----------cceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeecc
Confidence 366676755543 577777 899999999876 33333322 467899999999887777665422
Q ss_pred CeE-EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccC
Q psy17342 141 GQI-VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 141 g~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
=.+ .++.+.-..........+-..+|...|.++ ++++++.+++ .|+.|++|++...++.... ...
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~ 176 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFL 176 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEE-----TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEE
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEec-----CCCcEEEecccCCCCcEEEEEECCCCceeee-------ecc
Confidence 111 122221111100000001113344344332 4566666644 5999999999642322222 223
Q ss_pred CccceEEEEecc--CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC---ceeeeecCccCCCCCCCcEE-------
Q psy17342 218 KNLAVLSLAFPQ--NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG---PVVGLSSHRAQGHIDFSHLY------- 285 (401)
Q Consensus 218 ~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~l------- 285 (401)
|...++.++|+| .++..|++|+.|+.|++||+.. .+++.++.+|.. .+.+++|+|+ +.++
T Consensus 177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpd------G~~lvs~s~~~ 248 (356)
T 2w18_A 177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEM------GLLFIVLSHPC 248 (356)
T ss_dssp CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEET------TEEEEEEC---
T ss_pred CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCC------CCEEEEeccCC
Confidence 666777777773 3779999999999999999984 457888876544 5666789997 5665
Q ss_pred -----EEEeCCCeEEEEEeeCCCceEEEe-----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342 286 -----LTSSYDWSVKLWNIKENKPVHSFN-----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV 355 (401)
Q Consensus 286 -----~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 355 (401)
++|+.|++|++||..+++.+..+. +|...+.+..++ +. ++++++.|++|+|||+.+++.+..+.
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~--- 322 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLP--- 322 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEEC---
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEec---
Confidence 678889999999999998877652 555555555544 54 79999999999999999988665542
Q ss_pred cCCCCe-EEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342 356 EGAPAL-SRVTWTPNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 356 ~~~~~v-~~~~~s~~g~~l~~~~~dg~v~iw~~~ 388 (401)
+|...+ ..++|+|||++|++|+.|++|+|||+.
T Consensus 323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 455544 468999999999999999999999963
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.7e-29 Score=226.15 Aligned_cols=300 Identities=10% Similarity=0.040 Sum_probs=221.8
Q ss_pred ccceEEEE---ecCCCCCeEEEEeccCC----CCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEE
Q psy17342 65 NRNVTYMD---WSTQHPELLLASYHRNK----EAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLIL 135 (401)
Q Consensus 65 ~~~v~~~~---~~~~~~~l~~~~~~~~~----~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 135 (401)
...+..++ |+|++..++..+..... +..+..++.+.||.++ ++.......+.....+.+++|+| +..+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEE
Confidence 36688888 99998877766522110 0122344433455443 33323333344456678999999 558888
Q ss_pred EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342 136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215 (401)
Q Consensus 136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 215 (401)
+++.++.|++||+.+++...... ...+.+|...|.+++| ++++..+++++.|+.|++||++... .. ..+
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~-~~--~~~----- 207 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSP-PEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLA-YK--ATV----- 207 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECC-CHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCC-EE--EEE-----
T ss_pred EeCCCCeEEEEECCCCeEeeecC-cccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCce-EE--EEE-----
Confidence 88889999999998876542211 1134689999999999 8999999999999999999997522 11 121
Q ss_pred cCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-----
Q psy17342 216 QTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS----- 289 (401)
Q Consensus 216 ~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~----- 289 (401)
..+...+.+++|+ ++++.+ ++++.++.|++||++.. +.+..+.. ...+.+++|+|+ ++++++++
T Consensus 208 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~-~~~~~~~~~~~~------g~~l~~~~~~~~~ 277 (433)
T 3bws_A 208 DLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTK--LEIRKTDK-IGLPRGLLLSKD------GKELYIAQFSASN 277 (433)
T ss_dssp ECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTT--EEEEECCC-CSEEEEEEECTT------SSEEEEEEEESCT
T ss_pred cCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCC--cEEEEecC-CCCceEEEEcCC------CCEEEEEECCCCc
Confidence 2367789999999 677766 55668999999999743 34555554 456899999998 67888877
Q ss_pred ---CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342 290 ---YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW 366 (401)
Q Consensus 290 ---~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 366 (401)
.|+.|++||+++++.+..+. |...+.+++|+|+++.++++++.|+.|++||+.+++.... ..+...+.+++|
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~----~~~~~~~~~~~~ 352 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS----IPVFDKPNTIAL 352 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE----EECSSSEEEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE----ecCCCCCCeEEE
Confidence 58899999999887776653 4568899999999987788889999999999997654433 245677999999
Q ss_pred cCCCcEEEEEec---------------CCcEEEEEeccCc
Q psy17342 367 TPNGTQLCVGDE---------------KGAITMFDVGEVG 391 (401)
Q Consensus 367 s~~g~~l~~~~~---------------dg~v~iw~~~~~~ 391 (401)
+|+|++|++++. ||.|++||+.+++
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 999999988876 5799999998874
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.9e-30 Score=225.90 Aligned_cols=250 Identities=8% Similarity=0.035 Sum_probs=173.3
Q ss_pred EEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC
Q psy17342 101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN 180 (401)
Q Consensus 101 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 180 (401)
||++.+.+.+... ..|...|++++|+|++ .+|++|+.++ +++|+........ ..+...+..+++ .++
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~--------~~~~~~~~~~~~--~~~ 69 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIM--------SQEMRHLSKVRM--LHR 69 (355)
T ss_dssp -----------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEE--------EEECSCCCEEEE--CTT
T ss_pred cccccccCCcccc-ccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceee--------eeecCCeEEEEE--cCC
Confidence 4455544333222 3468999999999988 7888887664 7899987654321 112224667777 566
Q ss_pred ceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342 181 AHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC 259 (401)
Q Consensus 181 ~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 259 (401)
++.+ ++++.|++|++||+.+.. ... .+. +...|.+++++ ++ .++++ .++.|++||+.... +.+..
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~-~~~--~~~------~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~~~~-~~~~~ 135 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQ-DVS--RIK------VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFGNPW-KRITD 135 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTE-EEE--EEE------CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESSTTC-CBSSC
T ss_pred CCEEEEEECCccEEEEEECCCCc-EEE--EEE------CCCceEEEEEc-CC--EEEEE-EcCEEEEEECCCCc-eeeEE
Confidence 6665 567888999999987522 221 111 44589999998 43 34444 47899999998541 23444
Q ss_pred ecCCCCceeeeecCccCCCCCCCcEEEE--EeCCCeEEEEEeeCCC---------------c-eEEEeecCCceEEEEEC
Q psy17342 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLT--SSYDWSVKLWNIKENK---------------P-VHSFNEFRDYVMDVQWS 321 (401)
Q Consensus 260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~---------------~-~~~~~~~~~~v~~v~~~ 321 (401)
+.. +...++++| .+++. |+.||.|++||+++++ + +..+.+|...|.+++|+
T Consensus 136 ~~~---~~~~~~~s~--------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s 204 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN 204 (355)
T ss_dssp CEE---EEEEEEEET--------TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred ecc---CCceEEEEc--------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence 443 334445554 24444 6789999999998765 2 78899999999999999
Q ss_pred CCCCcEEEEEecCCE-EEEEeCCCCCCCcceEEeec-CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 322 PINPALFATVEVAGR-VDLWNLNLDTEVPATSAIVE-GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 322 ~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
|++. +|++++.|++ |++||+++++.+..+. .+ |...|++++|+|+|++|++++.|+.|++||+.++.
T Consensus 205 ~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 205 RKSD-MVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTSS-EEEEEETTCSEEEEEETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCC-EEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9997 8999999998 9999999887654442 23 78899999999999999999999999999998764
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.7e-29 Score=229.99 Aligned_cols=330 Identities=12% Similarity=0.087 Sum_probs=232.5
Q ss_pred hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342 7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 86 (401)
+..+++++.|+.|++||....+.+. .+.. . ..+..++|+|+|++|++++
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~------------------------~i~~---g--~~~~~v~~spdg~~l~v~~-- 197 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVK------------------------VIDT---G--YAVHISRMSASGRYLLVIG-- 197 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEE------------------------EEEC---S--TTEEEEEECTTSCEEEEEE--
T ss_pred CEEEEEEcCCCeEEEEECCCceEEE------------------------EEec---C--cccceEEECCCCCEEEEEC--
Confidence 4567778888899998876544111 1110 1 2288999999999999999
Q ss_pred cCCCCCCCCCcEEEEEeC--cCCCCCceEEEecCCCeeEEEEeC----CCCceEEEEe-cCCeEEEEECCCCCCCceeec
Q psy17342 87 RNKEAPNEPDGVCLIWNT--KFKKTTPEFEFFCQSPVLSCCFAK----FNPYLILGGT-YSGQIVLWDTRVQKKTPVHRT 159 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~g~-~dg~v~iw~~~~~~~~~~~~~ 159 (401)
.++.|.+||+ .+++.+.++ .+...+..++|+| ++. ++++++ .+++|.+||..+.+.......
T Consensus 198 --------~d~~V~v~D~~~~t~~~~~~i--~~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 198 --------RDARIDMIDLWAKEPTKVAEI--KIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVST 266 (543)
T ss_dssp --------TTSEEEEEETTSSSCEEEEEE--ECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred --------CCCeEEEEECcCCCCcEEEEE--ecCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecc
Confidence 6899999999 666554433 3456789999999 884 555555 589999999987765433221
Q ss_pred c-cccc---CCC-CcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCC
Q psy17342 160 P-LSVM---AHT-HPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233 (401)
Q Consensus 160 ~-~~~~---~~~-~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 233 (401)
. .... .|. ..+.++.+ ++++ ..+++...++.|.+||+....... ...+ .+...+..++|+ |+++
T Consensus 267 ~g~~~~~~~~~~~~~v~~i~~--s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i------~~~~~~~~~~~s-pdg~ 336 (543)
T 1nir_A 267 RGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSI------GAAPFLHDGGWD-SSHR 336 (543)
T ss_dssp CEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEE------ECCSSCCCEEEC-TTSC
T ss_pred cCcccCccccccCCceEEEEE--CCCCCEEEEEECCCCeEEEEEecCCCcce-eEEe------ccCcCccCceEC-CCCC
Confidence 0 0000 133 37888988 7755 456677889999999997633221 1111 134457789999 7888
Q ss_pred eEEEE-cCCceEEEEeCCCCCCCceeeecC----CCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeC------
Q psy17342 234 NFVVG-CEDGNVYSACRHGNKAGNVECYEG----HEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKE------ 301 (401)
Q Consensus 234 ~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~------ 301 (401)
+++++ ..++.|.+||.... +++..+.. |.+....+ ++|+. +.+++++. .|++|.+||+.+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg--~l~~~i~~g~~ph~g~g~~~-~~p~~-----g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDR--RLSALVDVGKTPHPGRGANF-VHPKY-----GPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTT--EEEEEEECSSSBCCTTCEEE-EETTT-----EEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred EEEEEecCCCeEEEEECCCC--eEEEeeccCCCCCCCCCccc-CCCCC-----ccEEEeccCCCceEEEEEeCCCCCchh
Confidence 76654 56889999999854 35555553 54433333 35653 57777776 589999999988
Q ss_pred -CCceEEEeecCCceEEEEECCCCCcEEEEEe-------cCCEEEEEeCCCCCCCcce-EE-----eecCCCCeEEEEec
Q psy17342 302 -NKPVHSFNEFRDYVMDVQWSPINPALFATVE-------VAGRVDLWNLNLDTEVPAT-SA-----IVEGAPALSRVTWT 367 (401)
Q Consensus 302 -~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~-~~-----~~~~~~~v~~~~~s 367 (401)
.+.++++..|...+..++++|+++ .|++++ .+++|.+||+.+.+..... .. ...+...+..+.|+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 487 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence 889999999988889999999998 667765 3779999999988765221 10 01345779999999
Q ss_pred CCCcEEEEEe-----cCCcEEEEEeccCccceeeeee
Q psy17342 368 PNGTQLCVGD-----EKGAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 368 ~~g~~l~~~~-----~dg~v~iw~~~~~~~~~l~~~~ 399 (401)
|+|+.|+++. .++.|.|||.+++ +++++++
T Consensus 488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~--~~~~~i~ 522 (543)
T 1nir_A 488 KRGDEVWFSVWNGKNDSSALVVVDDKTL--KLKAVVK 522 (543)
T ss_dssp SSSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEEC
T ss_pred CCCCEEEEEeecCCCCCCeEEEEECCCc--eEEEeec
Confidence 9999998763 4799999999998 5566654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.3e-28 Score=205.47 Aligned_cols=190 Identities=9% Similarity=0.081 Sum_probs=134.6
Q ss_pred CCceEEEEe--cCCeEEEEECCC-CCCCceeeccccccCCCCcEEEEEEee-cCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342 130 NPYLILGGT--YSGQIVLWDTRV-QKKTPVHRTPLSVMAHTHPVFCMSVIG-TQNAHNLISISNDGRLCSWSLEMLSSPQ 205 (401)
Q Consensus 130 ~~~~l~~g~--~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 205 (401)
+.+++.++. .|+.|++|++.. ++.. .....|...+..++|.+ .-++..|++++.|++|++||+.++. ..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~------~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l 216 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGK------ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LL 216 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEE------EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCcee------eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EE
Confidence 335666643 589999999954 4322 22357888899999933 2278999999999999999998632 22
Q ss_pred cccccccccccCCccceEEEEeccCCCCeE------------EEEcCCceEEEEeCCCCCCCceeee-----cCCCCcee
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNF------------VVGCEDGNVYSACRHGNKAGNVECY-----EGHEGPVV 268 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~v~ 268 (401)
..+... ..+...+.+++|+ |++.++ ++|+.|+.|++||..... .+..+ .+|...+.
T Consensus 217 ~tL~g~----~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~l 289 (356)
T 2w18_A 217 KKMHID----DSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFL 289 (356)
T ss_dssp EEEECC----C---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEE
T ss_pred EEEcCC----CcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeE
Confidence 222111 1123467788899 677765 568889999999987442 33333 36665544
Q ss_pred eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE-EEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342 269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM-DVQWSPINPALFATVEVAGRVDLWNL 342 (401)
Q Consensus 269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~~~~~d~~i~iwd~ 342 (401)
+..++ +.++++++.|++|+|||+.+++++.++.+|...+. .++|+|+|+ +|++|+.|++|+|||+
T Consensus 290 sg~~s--------g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 290 EGDVK--------DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEE--------TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred ccccC--------CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence 33333 46899999999999999999999999998877655 589999997 8999999999999996
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.3e-26 Score=205.96 Aligned_cols=250 Identities=9% Similarity=0.037 Sum_probs=184.2
Q ss_pred CCCeEEEEeccCCCCCCCCC---cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC---eEEEEECCC
Q psy17342 77 HPELLLASYHRNKEAPNEPD---GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---QIVLWDTRV 150 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~v~iw~~~~ 150 (401)
+..++.++... .+ +.|++||++. ... .....|...+.+++|+|++ +.|++++.++ .|++||+.+
T Consensus 143 ~~~l~~~s~~~-------~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 143 RTRIAYVVQTN-------GGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp TCEEEEEEECS-------SSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT
T ss_pred CCEEEEEEecC-------CCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC
Confidence 56777777310 12 8999999984 333 3445578899999999988 5777777664 999999988
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCc--EEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGR--LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF 227 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (401)
++.. .+..|...+.+++| +|++..|+ +++.++. |.+||+.... . .. +..+...+.+++|
T Consensus 213 g~~~-------~l~~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~-~---~~-----l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 213 GAVR-------QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQ-I---RQ-----VTDGRSNNTEPTW 274 (415)
T ss_dssp CCEE-------EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCC-E---EE-----CCCCSSCEEEEEE
T ss_pred CcEE-------EeecCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCC-E---Ee-----CcCCCCcccceEE
Confidence 7642 23567789999999 99999887 6666665 8889987521 1 12 2336678999999
Q ss_pred ccCCCCeEEEEcC-Cc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeC
Q psy17342 228 PQNDVNNFVVGCE-DG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKE 301 (401)
Q Consensus 228 ~~~~~~~l~~~~~-d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~ 301 (401)
+ |+++.|++++. ++ .|++||+.+.. ...+..+...+.+++|+|+ +++|++++.+ ..|++||+.+
T Consensus 275 s-pdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spd------G~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 275 F-PDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp C-TTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTT------SSEEEEEEECSSCEEEEEEETTT
T ss_pred C-CCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCcccCeEECCC------CCEEEEEECcCCceEEEEEECCC
Confidence 9 89998888776 44 67888887543 3445557778999999999 7888887764 5899999988
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCC---EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG---RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT 371 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 371 (401)
++. ..+..+. .+.+++|+|+|+ +|++++.++ .|++||+..+. ... ...+...|.+++|+|.-+
T Consensus 345 ~~~-~~l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~-~~~---l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 345 GGV-QVLSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRF-KAR---LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCE-EECCCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTSCC-EEE---CCCSSSEEEEEEECCCCC
T ss_pred CCE-EEecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCCCc-EEE---eeCCCCCCcCCccccccc
Confidence 766 4455554 899999999998 566666665 89999987543 222 235678899999999754
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.2e-27 Score=210.12 Aligned_cols=285 Identities=12% Similarity=0.043 Sum_probs=206.9
Q ss_pred cceEEEEecCCCCCeE-EEEeccCCCCCCCCCc----EEEEEeC--cCCCCCceE-EEecCCCeeEEEEeCC--------
Q psy17342 66 RNVTYMDWSTQHPELL-LASYHRNKEAPNEPDG----VCLIWNT--KFKKTTPEF-EFFCQSPVLSCCFAKF-------- 129 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~-~~~~~~~~~~~~~~d~----~v~iwd~--~~~~~~~~~-~~~~~~~v~~~~~~~~-------- 129 (401)
..+...+|.+.|..++ +++... ..+| .|+|||+ .+++.+... ...|...+..+++++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~------~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 136 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTP------NPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLT 136 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEE------CTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEE------CCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHc
Confidence 4678888999987666 555210 1456 9999999 877655332 2335566777766641
Q ss_pred ------CCceEEEEecC------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC---cEE
Q psy17342 130 ------NPYLILGGTYS------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG---RLC 194 (401)
Q Consensus 130 ------~~~~l~~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~ 194 (401)
+ ..++.++.+ +.|++||++.... ..+..|...+.+++| +|+++.|++++.++ .|+
T Consensus 137 g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g~~~-------~~l~~~~~~v~~~~~--Spdg~~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 137 GIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDGYNQ-------FVVHRSPQPLMSPAW--SPDGSKLAYVTFESGRSALV 206 (415)
T ss_dssp SSCCCTT-CEEEEEEECSSSSCCEEEEEEETTSCSC-------EEEEEESSCEEEEEE--CTTSSEEEEEECTTSSCEEE
T ss_pred CCCCcCC-CEEEEEEecCCCCccceEEEEcCCCCCC-------EEEeCCCCcceeeEE--cCCCCEEEEEEecCCCcEEE
Confidence 3 344444443 7999999975432 224578899999999 99999999999885 899
Q ss_pred EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE-EEcCCce--EEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342 195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGN--VYSACRHGNKAGNVECYEGHEGPVVGLS 271 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~v~~i~ 271 (401)
+||+.+.. .. .+ ..+...+.+++|+ |+++.|+ +++.++. |++||+.... ...+..|...+.+++
T Consensus 207 ~~d~~tg~-~~---~l-----~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 207 IQTLANGA-VR---QV-----ASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEETTTCC-EE---EE-----ECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEE
T ss_pred EEECCCCc-EE---Ee-----ecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceE
Confidence 99998532 11 22 2255689999999 7888777 6666554 9999987543 456777888999999
Q ss_pred cCccCCCCCCCcEEEEEeC-CC--eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCC
Q psy17342 272 SHRAQGHIDFSHLYLTSSY-DW--SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLD 345 (401)
Q Consensus 272 ~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~ 345 (401)
|+|+ +++|++++. ++ .|.+||+.+++. ..+..+...+.+++|+|+|+ +|++++.+ ..|++||+.++
T Consensus 274 ~spd------g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 274 WFPD------SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp ECTT------SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTC
T ss_pred ECCC------CCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCCC
Confidence 9999 788887775 45 677778877653 45556677899999999998 56665543 58999999987
Q ss_pred CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC---cEEEEEeccCcc
Q psy17342 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG---AITMFDVGEVGI 392 (401)
Q Consensus 346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~v~iw~~~~~~~ 392 (401)
+... + ..+ ..+.+++|+|+|++|++++.++ .|++||+..+..
T Consensus 346 ~~~~-l---~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 346 GVQV-L---SST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp CEEE-C---CCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CEEE-e---cCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 6421 1 222 3789999999999999988877 799999986543
No 130
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=2.3e-26 Score=220.66 Aligned_cols=331 Identities=11% Similarity=0.061 Sum_probs=221.5
Q ss_pred chhhhhccccccccccccccccccCCCCC-CCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGL-PQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 80 (401)
.|. ++.+++++.+| | +||...++.+ ..+.....+.. .++..... .+ .+...|.+++|+|+ +.+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--------~l~~~~~~--~~-~~~~~v~~~~~spd-~~~ 95 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--------LMPEGCKF--QT-TDAFPSFRTLDAGR-GLV 95 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--------TC--------------CCCEEEEETTT-TEE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--------hccchhcc--cc-ccccCceeEEECCC-CeE
Confidence 465 67788888888 7 9998777642 22211111100 00000000 00 12256999999999 777
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-----CCCCc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-----QKKTP 155 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~-----~~~~~ 155 (401)
+++. ++.|++||+.+++.. ....+...+.+++|+|++ +.|+.+ .++.|++|++.+ ++...
T Consensus 96 ~~~~-----------~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 96 VLFT-----------QGGLVGFDMLARKVT--YLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp EEEE-----------TTEEEEEETTTTEEE--EEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEE
T ss_pred EEEE-----------CCEEEEEECCCCceE--EccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEE
Confidence 7777 799999999876432 234456789999999988 566664 689999999987 55321
Q ss_pred eeeccccccCCCC--------------cEEEEEEeecCCceEEEEEe---------------------------------
Q psy17342 156 VHRTPLSVMAHTH--------------PVFCMSVIGTQNAHNLISIS--------------------------------- 188 (401)
Q Consensus 156 ~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~~l~s~~--------------------------------- 188 (401)
. ...+.. .+.++.| +|++++|++++
T Consensus 161 ~------~~~~~~~~~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 161 V------TIDGTETLVYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp S------CSCCBTTEEESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred e------ccCCCCCeEcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 1 112222 2578899 99999999987
Q ss_pred CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeCCCCCCCceeeec--
Q psy17342 189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYE-- 261 (401)
Q Consensus 189 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~-- 261 (401)
.+..|.+||+.... ...... ...+...+.+++|+ |+++.|++++.++ .|++||..+.. ....+.
T Consensus 233 ~~~~l~~~d~~~~~-~~~~~~-----~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~ 303 (706)
T 2z3z_A 233 HHVTVGIYHLATGK-TVYLQT-----GEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVE 303 (706)
T ss_dssp CEEEEEEEETTTTE-EEECCC-----CSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEE
T ss_pred CeeEEEEEECCCCc-eEeecc-----CCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEc
Confidence 44679999987522 111111 11356679999999 8999998877665 89999987541 122221
Q ss_pred CCC---CceeeeecCc--cCCCCCCCcEEEEEeCCCeEEEEEee-CCCceEEEeecCCceEE-EEECCCCCcEEEEEecC
Q psy17342 262 GHE---GPVVGLSSHR--AQGHIDFSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEFRDYVMD-VQWSPINPALFATVEVA 334 (401)
Q Consensus 262 ~~~---~~v~~i~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~~~~~d 334 (401)
.+. ..+.++.|+| + ++++++++.|+.++||++. +++.+..+..+...+.. ++|+|+++.++++++.+
T Consensus 304 ~~~~~~~~~~~~~~sp~~d------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSN------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp ECSSCCCCCSCCEECTTCS------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred cCCCeECccCCceeecCCC------CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 122 2346789999 7 7899999999999999987 66777778777777877 79999998666666666
Q ss_pred C----EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccCc
Q psy17342 335 G----RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEVG 391 (401)
Q Consensus 335 ~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~~ 391 (401)
+ .|..||+.++.. .. ..+...+..++|+|||++|+....+ +.|++||+.+++
T Consensus 378 ~~~~~~l~~~d~~~~~~-~~----l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKT-KD----LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCCC-EE----SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCCc-ee----ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 5 677778776542 22 2355678999999999998876544 459999998875
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=9.6e-26 Score=197.13 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=187.7
Q ss_pred CCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-CeEEEEECC--CCCCCceeeccccccCCCCcE
Q psy17342 95 PDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-GQIVLWDTR--VQKKTPVHRTPLSVMAHTHPV 170 (401)
Q Consensus 95 ~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~~~~v 170 (401)
.++.|++|++.. +.........+...+.+++|+|++ ++|++++.+ +.|.+|++. ++...... .+..+. .+
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~-~~ 86 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAA----ESALPG-SL 86 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEE----EEECSS-CC
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeecc----ccccCC-CC
Confidence 689999999963 322233334567789999999988 455555554 999999997 33322111 112223 77
Q ss_pred EEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEe
Q psy17342 171 FCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSAC 248 (401)
Q Consensus 171 ~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~ 248 (401)
..++| +|++.++++++. ++.|.+||+.. +......... .....+.+++|+ ++++.+++++ .++.|++|+
T Consensus 87 ~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-----~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 87 THIST--DHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVV-----EGLDGCHSANIS-PDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp SEEEE--CTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEE-----CCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEE
T ss_pred cEEEE--cCCCCEEEEEecCCCeEEEEECCC-Cccccccccc-----cCCCCceEEEEC-CCCCEEEEecCCCCEEEEEE
Confidence 88999 999998776654 88899999952 1111111111 123358889999 7888777776 899999999
Q ss_pred CCC-CCCCcee--eecC-CCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeC--CCc--eEEEeec------CC
Q psy17342 249 RHG-NKAGNVE--CYEG-HEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKE--NKP--VHSFNEF------RD 313 (401)
Q Consensus 249 ~~~-~~~~~~~--~~~~-~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~~~------~~ 313 (401)
+.. ....... .+.. ....+..++|+|+ ++++ +++..++.|.+||+.. ++. ...+... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 974 2211111 2222 3346788999998 5655 4555789999999953 433 2222211 23
Q ss_pred ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEec--c
Q psy17342 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDVG--E 389 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~--~ 389 (401)
.+.+++|+|+++.+++++..++.|.+||+..... ...... ......+..++|+|+|++|++++ .++.|.+|++. +
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 5678999999986666777899999999983211 122221 22233488999999999888887 68999999665 5
Q ss_pred Cccceeeeeec
Q psy17342 390 VGIACLKFITS 400 (401)
Q Consensus 390 ~~~~~l~~~~~ 400 (401)
++++.+..++.
T Consensus 311 g~~~~~~~~~~ 321 (343)
T 1ri6_A 311 GLLHEKGRYAV 321 (343)
T ss_dssp TEEEEEEEEEC
T ss_pred ceeeEcccccc
Confidence 65566665554
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5.8e-26 Score=209.39 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=206.2
Q ss_pred EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEEC--C
Q psy17342 72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT--R 149 (401)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~--~ 149 (401)
+|+|++..+++.. .+++|.+||..+++.+..+..++ .+..++|+|++ ++|++++.++.|.+||+ .
T Consensus 144 ~~~p~~~~~vs~~----------~d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 144 DLDLPNLFSVTLR----------DAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASG-RYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCCGGGEEEEEEG----------GGTEEEEEETTTCCEEEEEECST--TEEEEEECTTS-CEEEEEETTSEEEEEETTSS
T ss_pred ccCCCCEEEEEEc----------CCCeEEEEECCCceEEEEEecCc--ccceEEECCCC-CEEEEECCCCeEEEEECcCC
Confidence 3889886666655 78999999999888776554443 38999999988 68888888999999999 5
Q ss_pred CCCCCceeeccccccCCCCcEEEEEEeecC----CceEEEEEeC-CCcEEEeeccCCCCCcccccccccccc----CCcc
Q psy17342 150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ----NAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQ----TKNL 220 (401)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~ 220 (401)
+.+... .+. +...+..++| +| +++++++++. +++|.+||..+. ++...+........ ....
T Consensus 211 t~~~~~------~i~-~g~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 211 EPTKVA------EIK-IGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp SCEEEE------EEE-CCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCC
T ss_pred CCcEEE------EEe-cCCCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCC
Confidence 543221 122 4556789999 89 9999998884 899999998763 22222222110000 0223
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE-eCCCeEEEEEe
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNI 299 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~ 299 (401)
.+..+.++|.....+++...++.|.+||........+..+ .+...+.++.|+|+ +++|+++ ..+++|.+||.
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spd------g~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSS------HRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTT------SCEEEEEEGGGTEEEEEET
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCC------CCEEEEEecCCCeEEEEEC
Confidence 6889999954566677888899999999875432222233 35667889999998 6766554 45899999999
Q ss_pred eCCCceEEEee----cCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCC-------CCCCcceEEeecCCCCeEEEEec
Q psy17342 300 KENKPVHSFNE----FRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNL-------DTEVPATSAIVEGAPALSRVTWT 367 (401)
Q Consensus 300 ~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~~~~s 367 (401)
.+++++..+.. |.+....+ ++|++..+++++. .|++|.+||+.+ .+.+..+ ..+...+..++++
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---~~~g~~~~~v~~~ 429 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---QGQGGGSLFIKTH 429 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE---ECSCSCCCCEECC
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE---EcCCCCceEEEcC
Confidence 99998888874 55433333 5787445777775 589999999987 3333332 3455667889999
Q ss_pred CCCcEEEEEe-------cCCcEEEEEeccCc
Q psy17342 368 PNGTQLCVGD-------EKGAITMFDVGEVG 391 (401)
Q Consensus 368 ~~g~~l~~~~-------~dg~v~iw~~~~~~ 391 (401)
|+|++|++++ .+++|.+||+.+.+
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 9999999987 36799999999885
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3e-25 Score=214.11 Aligned_cols=290 Identities=7% Similarity=-0.023 Sum_probs=203.7
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCc-----EEEEEeCcCCCCCceEEEecC----------------------
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDG-----VCLIWNTKFKKTTPEFEFFCQ---------------------- 118 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~---------------------- 118 (401)
..|.+++|+|||++|++++. .|+ .|++||+.+++.......+..
T Consensus 37 ~~~~~~~~SpdG~~la~~~~---------~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRG---------KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCEEEEECTTSSEEEEEEC---------CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------C
T ss_pred CCCCCceEecCCCEEEEEec---------cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 56999999999999999992 266 999999987764432221111
Q ss_pred -CCeeEEEEeCCCCceEEEEecCCeEEEEECCCC---CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342 119 -SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ---KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC 194 (401)
Q Consensus 119 -~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 194 (401)
..+.+++|+|++ ++|++++. +.|.+||+.++ ... .+..|...+..++| +|+|++|+.++. +.|.
T Consensus 108 ~~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~-------~l~~~~~~~~~~~~--SPDG~~la~~~~-~~i~ 175 (741)
T 2ecf_A 108 MTGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR-------QLTHGEGFATDAKL--SPKGGFVSFIRG-RNLW 175 (741)
T ss_dssp CEESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC-------BCCCSSSCEEEEEE--CTTSSEEEEEET-TEEE
T ss_pred ccCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE-------EcccCCcccccccC--CCCCCEEEEEeC-CcEE
Confidence 237899999988 56666654 99999999887 332 24567788999999 999999999875 5899
Q ss_pred EeeccCCCCCccccccccc-cccC--------CccceEEEEeccCCCCeEEEEcCCc-----------------------
Q psy17342 195 SWSLEMLSSPQETRDLQYN-NKQT--------KNLAVLSLAFPQNDVNNFVVGCEDG----------------------- 242 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~-~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~----------------------- 242 (401)
+||+.... .......... ...+ ....+..++|+ |+++.|++++.|+
T Consensus 176 ~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 176 VIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEecCCCC-EEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 99987521 1111110000 0000 00124789999 8999999887665
Q ss_pred ----------eEEEEeCCC-CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-----CCeEEEEEeeCCCceE
Q psy17342 243 ----------NVYSACRHG-NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-----DWSVKLWNIKENKPVH 306 (401)
Q Consensus 243 ----------~i~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~ 306 (401)
.|++||+.+ .+...+.....|...+.+++| |+ ++.|+.++. +..|++||+.+++...
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD------g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD------PQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE------TTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CC------CCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 788899875 432111111147788999999 99 788776653 5689999999988877
Q ss_pred EEeecCC----ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEE-EecCCCcEEE-EEecCC
Q psy17342 307 SFNEFRD----YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV-TWTPNGTQLC-VGDEKG 380 (401)
Q Consensus 307 ~~~~~~~----~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~-~~~~dg 380 (401)
.+..+.. .+..++|+|+|+ ++++++.||.++||.+..... ......+...+..+ .|+|+|+.|+ +++.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp EEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred EEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 7766543 346899999998 888899999888887653222 22223456667777 5999998775 455555
Q ss_pred --cEEEEEecc
Q psy17342 381 --AITMFDVGE 389 (401)
Q Consensus 381 --~v~iw~~~~ 389 (401)
.++||++..
T Consensus 403 ~~~~~l~~~~~ 413 (741)
T 2ecf_A 403 ARESQIYAVPL 413 (741)
T ss_dssp TTCBEEEEEET
T ss_pred CceEEEEEEEc
Confidence 899999975
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.9e-25 Score=194.40 Aligned_cols=288 Identities=8% Similarity=0.056 Sum_probs=194.4
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
..|.+++..++++. +.++.|.+||..+++.......+ ...+ .++|+|++..+++++..++.|.+||..+
T Consensus 3 ~~~~~~~~~~~v~~---------~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 71 (331)
T 3u4y_A 3 AMFQTTSNFGIVVE---------QHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL 71 (331)
T ss_dssp ----CCCCEEEEEE---------GGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred eeEcCCCCEEEEEe---------cCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 34667777766655 26899999999988766555433 4455 9999999865666666688999999988
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC---cEEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG---RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF 227 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 227 (401)
++.. . ..+..+..+..+++| +|++.+++++..++ .|.+||+.... .... +. ....+.+++|
T Consensus 72 ~~~~-~----~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~--~~------~~~~~~~~~~ 135 (331)
T 3u4y_A 72 EPPK-V----VAIQEGQSSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNK-FIST--IP------IPYDAVGIAI 135 (331)
T ss_dssp SSCE-E----EEEEECSSCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTE-EEEE--EE------CCTTEEEEEE
T ss_pred Ccee-E----EecccCCCCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCC-eEEE--EE------CCCCccceEE
Confidence 7641 1 112345555555888 99999999555553 89999997522 1111 11 2335689999
Q ss_pred ccCCCCeEEEE-cCCce-EEEEeCCCCCCCce---eeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeC
Q psy17342 228 PQNDVNNFVVG-CEDGN-VYSACRHGNKAGNV---ECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 228 ~~~~~~~l~~~-~~d~~-i~~~~~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~ 301 (401)
+ |++++++++ ..++. |.+|++..... .. ............++|+|+ ++ +++++..++.|++||+.+
T Consensus 136 s-pdg~~l~~~~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~d~~~ 207 (331)
T 3u4y_A 136 S-PNGNGLILIDRSSANTVRRFKIDADGV-LFDTGQEFISGGTRPFNITFTPD------GNFAFVANLIGNSIGILETQN 207 (331)
T ss_dssp C-TTSSCEEEEEETTTTEEEEEEECTTCC-EEEEEEEEECSSSSEEEEEECTT------SSEEEEEETTTTEEEEEECSS
T ss_pred C-CCCCEEEEEecCCCceEEEEEECCCCc-EeecCCccccCCCCccceEECCC------CCEEEEEeCCCCeEEEEECCC
Confidence 9 788755544 55577 99999874221 11 111133455789999998 66 455555689999999999
Q ss_pred CCc---eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec---CC---CCeEEEEecCCCcE
Q psy17342 302 NKP---VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE---GA---PALSRVTWTPNGTQ 372 (401)
Q Consensus 302 ~~~---~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~---~~v~~~~~s~~g~~ 372 (401)
++. +..+.. ...+..++|+|+|+.++++...++.|.+||+.+++.......... +. .....++|+|+|++
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 208 PENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp TTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred CcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 888 777765 466789999999985556666678999999988765211111101 01 12355899999998
Q ss_pred EEEEe-cCCcEEEEEeccCccce
Q psy17342 373 LCVGD-EKGAITMFDVGEVGIAC 394 (401)
Q Consensus 373 l~~~~-~dg~v~iw~~~~~~~~~ 394 (401)
|++++ .++.|.+||+.+..+..
T Consensus 287 l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEecCCCCcEEEEEecCCcccc
Confidence 86655 46699999998865433
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=8.1e-25 Score=186.97 Aligned_cols=257 Identities=12% Similarity=0.078 Sum_probs=189.8
Q ss_pred CCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-CCCCceeeccccccCC-CCcEE
Q psy17342 94 EPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-QKKTPVHRTPLSVMAH-THPVF 171 (401)
Q Consensus 94 ~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~-~~~v~ 171 (401)
+.++.|++||+.+++.. ....+...|.+++|+|++ ++|++++ ++.|.+||+.+ ++.... ...+ ...+.
T Consensus 19 ~~~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~------~~~~~~~~~~ 88 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKV------DTGFATICNN 88 (297)
T ss_dssp CCCEEEEEEETTTTEEE--EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEEC------CCTTCCCBCS
T ss_pred CcceeEEEEeCCCCcee--eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEe------cccccccccc
Confidence 36899999999876543 344568899999999988 5777765 88999999988 654321 1233 46788
Q ss_pred EEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE-EEcCCceEEEEe
Q psy17342 172 CMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGNVYSAC 248 (401)
Q Consensus 172 ~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~~~ 248 (401)
+++| +|++.+|++++ .++...+|.++....... .+. ....+..++|+ ++++.++ ++..++.+.+|+
T Consensus 89 ~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~--~~~------~~~~~~~~~~s-pdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 89 DHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPR--LMT------KNLPSYWHGWS-PDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCE--ECC------SSSSEEEEEEC-TTSSEEEEEEEETTEEEEEE
T ss_pred ceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceE--Eee------cCCCccceEEC-CCCCEEEEEECCCCceEEEE
Confidence 9999 99999999998 446677776653222211 111 22348889999 7888776 778899999998
Q ss_pred CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEee-CCCceEEEeecCCceEEEEECCCCCc
Q psy17342 249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIK-ENKPVHSFNEFRDYVMDVQWSPINPA 326 (401)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~ 326 (401)
++.... ....+..+...+.++.|+|+ +++++.++ .++.+++|++. .+..+..+..|...+..++|+|+++
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 229 (297)
T 2ojh_A 158 MDIDSG-VETRLTHGEGRNDGPDYSPD------GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD- 229 (297)
T ss_dssp EETTTC-CEEECCCSSSCEEEEEECTT------SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS-
T ss_pred EECCCC-cceEcccCCCccccceECCC------CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC-
Confidence 653332 34566678889999999998 67666655 58999999997 5667777887888899999999998
Q ss_pred EEEEEecC-----------CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342 327 LFATVEVA-----------GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380 (401)
Q Consensus 327 ~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 380 (401)
+|++++.+ +.|++||+.+++...... ...+...+..++|+|+|++|++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-cCCCCcccccceECCCCCEEEEEEecc
Confidence 56655554 579999998876433322 235667889999999999998887654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=5.7e-25 Score=192.19 Aligned_cols=306 Identities=9% Similarity=0.029 Sum_probs=194.7
Q ss_pred ccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCC
Q psy17342 10 QISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNK 89 (401)
Q Consensus 10 ~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 89 (401)
+++++.++.+++|++..... +..... ..+...+.+++|+|++++|++++.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~---- 57 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGA---------------------LTLTQV-----VDVPGQVQPMVVSPDKRYLYVGVR---- 57 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSC---------------------EEEEEE-----EECSSCCCCEEECTTSSEEEEEET----
T ss_pred EEeCCCCCeEEEEEECCCCc---------------------EEEeee-----EecCCCCceEEECCCCCEEEEeec----
Confidence 34447799999999854221 000000 123356889999999999999982
Q ss_pred CCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342 90 EAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT 167 (401)
Q Consensus 90 ~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 167 (401)
.++.|.+|+++ +++......+.....+..++|+|++..+++++..++.|.+||+..+..... .......
T Consensus 58 -----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~ 128 (343)
T 1ri6_A 58 -----PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV----VDVVEGL 128 (343)
T ss_dssp -----TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE----EEEECCC
T ss_pred -----CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc----cccccCC
Confidence 34999999997 444333333343458899999998855555655689999999952221111 1112233
Q ss_pred CcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCcccc--ccccccccCCccceEEEEeccCCCCeEE-EEcCCce
Q psy17342 168 HPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETR--DLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGN 243 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~ 243 (401)
..+.+++| +|++.++++++ .++.|.+||+...+...... ... ......+..++|+ +++++++ ++..++.
T Consensus 129 ~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-pdg~~l~~~~~~~~~ 201 (343)
T 1ri6_A 129 DGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT----TVEGAGPRHMVFH-PNEQYAYCVNELNSS 201 (343)
T ss_dssp TTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE----CSTTCCEEEEEEC-TTSSEEEEEETTTTE
T ss_pred CCceEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc----cCCCCCcceEEEC-CCCCEEEEEeCCCCE
Confidence 45888999 99998888777 89999999997522222111 111 1123467889999 7888665 4458899
Q ss_pred EEEEeCCCCCCCc--eeeec----CC--CCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeC----CCceEEEee
Q psy17342 244 VYSACRHGNKAGN--VECYE----GH--EGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKE----NKPVHSFNE 310 (401)
Q Consensus 244 i~~~~~~~~~~~~--~~~~~----~~--~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~----~~~~~~~~~ 310 (401)
|.+|++....... ..... ++ ...+..++|+|+ +++++ ++..++.|.+||+.. .+.+..+..
T Consensus 202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 9999996433222 22222 11 234668999998 55555 555799999999982 234444554
Q ss_pred cCCceEEEEECCCCCcEEEEEecCCEEEEEeCC--CCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLN--LDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
+.. +.+++|+|+++.+++++..++.|.+|++. +++...... ........+++|.++.
T Consensus 276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~--~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR--YAVGQGPMWVVVNAHE 334 (343)
T ss_dssp SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE--EECSSSCCEEEEEEEC
T ss_pred CCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc--cccCCCCeeEEEEccc
Confidence 444 88999999998544444478999999654 443222222 2223445667777654
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=4.8e-25 Score=212.70 Aligned_cols=339 Identities=9% Similarity=0.030 Sum_probs=224.9
Q ss_pred chhhhhcccccccc-cc-----ccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeee--ccccccccceEEEEe
Q psy17342 2 DWAEAGESQISGTL-HG-----LQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFF--DEKWSKNRNVTYMDW 73 (401)
Q Consensus 2 ~~~~~~~~~~~g~~-~g-----~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~ 73 (401)
.|..-|.++++++. || .+++||....+....+..... . ..+..+....... ..+......|.+++|
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV-L-----PGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT-C-------------------------CCEESCCCEE
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc-c-----cccccccchhhhhhhhhhhccccCcceeEE
Confidence 36667888999988 88 899999877653211110000 0 0000000000000 000011145889999
Q ss_pred cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
+|||++|++++ ++.|++||+.++ ... . ...+...+.+++|+|++ +.|+.++ ++.|.+||+.+
T Consensus 117 SpDg~~l~~~~-----------~~~i~~~d~~~~~~~~~~-~-l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 117 SPDAQRLLFPL-----------GGELYLYDLKQEGKAAVR-Q-LTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp CTTSSEEEEEE-----------TTEEEEEESSSCSTTSCC-B-CCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred CCCCCEEEEEe-----------CCcEEEEECCCCCcceEE-E-cccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCC
Confidence 99999999999 499999999976 332 2 23456789999999988 5666665 67999999987
Q ss_pred CCCCceeeccccccCCCC----------------cEEEEEEeecCCceEEEEEeCCC-----------------------
Q psy17342 151 QKKTPVHRTPLSVMAHTH----------------PVFCMSVIGTQNAHNLISISNDG----------------------- 191 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~l~s~~~dg----------------------- 191 (401)
++.... ...+.. .+.+++| +|++++|++++.|+
T Consensus 182 g~~~~~------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 182 GRQMQL------TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp TEEEEC------CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred CCEEEe------ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 653211 112222 1467889 99999999988765
Q ss_pred ----------cEEEeeccC-CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-----CceEEEEeCCCCCCC
Q psy17342 192 ----------RLCSWSLEM-LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-----DGNVYSACRHGNKAG 255 (401)
Q Consensus 192 ----------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~~~~~ 255 (401)
.|.+||+.. .. ... +.. ...+...+..++| | +++.|++++. +..|++||..+..
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~-~~~---~~~--~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~-- 323 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQ-TQW---IDL--GKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ-- 323 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCC-CEE---ECC--CSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC--
T ss_pred CCCCCCCCeeEEEEEECCCCCc-eEE---ecC--CCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc--
Confidence 678888764 32 111 110 1136678999999 4 7888776643 5679999987543
Q ss_pred ceeeecCCCC----ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-CCCceEEEeecCCceEEE-EECCCCCcEEE
Q psy17342 256 NVECYEGHEG----PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEFRDYVMDV-QWSPINPALFA 329 (401)
Q Consensus 256 ~~~~~~~~~~----~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v-~~~~~~~~~l~ 329 (401)
....+..+.. .+.+++|+|+ ++++++++.|+.++||.+. .++ ...+..|...+..+ .|+|+++.+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spd------g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDD------GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTT------SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred eEEEEEcCCCCcCCcCCceEECCC------CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEE
Confidence 3444444432 4568999998 6788999999988888775 345 77777778888887 59999986666
Q ss_pred EEecCC--EEEEEeCCC-CCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccC
Q psy17342 330 TVEVAG--RVDLWNLNL-DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEV 390 (401)
Q Consensus 330 ~~~~d~--~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~ 390 (401)
+++.++ .++||++.. +.....+ .....+..++|+|||++|+....+ ..+++|+...+
T Consensus 397 ~~~~~~~~~~~l~~~~~~g~~~~~l----~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQGGQPQRL----SKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EECSSCTTCBEEEEEETTCCCCEEC----CCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEeCCCCceEEEEEEEcCCCCeeec----ccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 777666 899999864 3322222 235668899999999998876544 46888887654
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=5.1e-24 Score=186.64 Aligned_cols=287 Identities=10% Similarity=0.040 Sum_probs=186.5
Q ss_pred CCcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342 95 PDGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV 170 (401)
Q Consensus 95 ~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 170 (401)
.++.|.+|+++. ++........+...+..++|+|++. +++++.. ++.|.+|++..+...... ....+...+
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~----~~~~~~~~p 88 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN----TVVAPGTPP 88 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE----EEEEESCCC
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee----eeecCCCCC
Confidence 456788887764 3333222334567788899999884 5555432 689999999665432211 123456678
Q ss_pred EEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccc----cCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342 171 FCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNK----QTKNLAVLSLAFPQNDVNNFVVGCEDGNVY 245 (401)
Q Consensus 171 ~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 245 (401)
..++| +|++++|++++ .++.+.+|++...+............. ......+.+++|+ |+++.+++...++.|+
T Consensus 89 ~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 89 AYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVY 165 (347)
T ss_dssp SEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEE
T ss_pred EEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEE
Confidence 88999 99999888887 688999999964222222111111000 0122358889999 7888777777789999
Q ss_pred EEeCCC-CCCCceeeecCC-CCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeC--CCc--eEEEeecC------
Q psy17342 246 SACRHG-NKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKE--NKP--VHSFNEFR------ 312 (401)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~~~~------ 312 (401)
+|++.. ........+..+ ...+..++|+|+ ++++ +++..++.|.+|++.. ++. +..+....
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD------GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 999872 221112222222 235678999998 6744 4456689999999985 432 22333222
Q ss_pred CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-CcEEEEEe--cc
Q psy17342 313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-GAITMFDV--GE 389 (401)
Q Consensus 313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~iw~~--~~ 389 (401)
..+..++|+|+|+.++++...++.|.+|++........+.....+...+..++|+|||++|++++.+ +.|.+|++ .+
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence 3588999999998666777778999999997432222222222334567899999999998888764 88999966 45
Q ss_pred Ccccee
Q psy17342 390 VGIACL 395 (401)
Q Consensus 390 ~~~~~l 395 (401)
+++..+
T Consensus 320 g~l~~~ 325 (347)
T 3hfq_A 320 GKLSLL 325 (347)
T ss_dssp CCEEEE
T ss_pred CeEEec
Confidence 554433
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=8.1e-24 Score=185.73 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=203.4
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
...+..++|+|+++.+++++.... ....++.|.+||..+++....+.. ...+..++|+|++..+++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 356889999999999988883100 000167999999998776554433 456889999999866777777789999
Q ss_pred EEECCCCCCCceeeccccc---cCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 145 LWDTRVQKKTPVHRTPLSV---MAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 145 iw~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
+||..+++........... ......+.+++| +++++++++++ .++.|.+||+.+.. .. ..+. .+.
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~--~~~~-----~~~ 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIK-LK--TAIQ-----NTG 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTE-EE--EEEC-----CCC
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCc-eE--EEec-----CCC
Confidence 9999887653222110000 000112688998 89988777765 47889999987522 11 1111 123
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----CCCceeeeecCccCCCCCCCcEEEEEe-CCCeE
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----HEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSV 294 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i 294 (401)
..+.+++|+ ++++.+++++.++.|.+||....+ ....+.. +...+.+++|+|+ +++++.++ .++.|
T Consensus 185 ~~~~~~~~s-~dg~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~v 255 (353)
T 3vgz_A 185 KMSTGLALD-SEGKRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDTA------RQRAFITDSKAAEV 255 (353)
T ss_dssp TTCCCCEEE-TTTTEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEETT------TTEEEEEESSSSEE
T ss_pred CccceEEEC-CCCCEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECCC------CCEEEEEeCCCCEE
Confidence 357788999 899999999999999999987543 3444432 4556788999998 56555554 46999
Q ss_pred EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
.+||..+++.+..+.... ...++|+|+++.++++...++.|.+||+.+++....+ .....+..++|+|+|++|+
T Consensus 256 ~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 256 LVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF----DTPTHPNSLALSADGKTLY 329 (353)
T ss_dssp EEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----ECCSEEEEEEECTTSCEEE
T ss_pred EEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE----ecCCCCCeEEEcCCCCEEE
Confidence 999999999888877643 2579999999866677767999999999887654443 3345689999999999887
Q ss_pred EEecCC
Q psy17342 375 VGDEKG 380 (401)
Q Consensus 375 ~~~~dg 380 (401)
++..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 776653
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.2e-24 Score=188.01 Aligned_cols=278 Identities=9% Similarity=0.034 Sum_probs=191.2
Q ss_pred CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342 79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH 157 (401)
Q Consensus 79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~ 157 (401)
++++++ .++.|.+||..+++....+...+.. .+..++|+|++..+++++..++.|.+||+.+++.....
T Consensus 3 ~~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 3 YILAPA----------RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEE----------TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcC----------CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 567777 7999999999987665544433222 58899999988667777777899999999887643221
Q ss_pred eccccccCCCCcEEEEEEeecCCceEEEEEe------------CCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISIS------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 158 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
.... ...|...+.+++| +++++++++++ .++.|.+||+.... ...... ....+.++
T Consensus 73 ~~~~-~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~--------~~~~~~~~ 140 (337)
T 1pby_B 73 DLST-PEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE--------APRQITML 140 (337)
T ss_dssp ECCB-TTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE--------CCSSCCCE
T ss_pred EcCC-cccccccccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEe--------CCCCccee
Confidence 1100 0001225667888 89998888886 57999999987521 111111 12357788
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCC------------
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDW------------ 292 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~------------ 292 (401)
+|+ ++++.++++ ++.|++||+...+ ....+..+.. ...+.|+|+ +..++..+ .++
T Consensus 141 ~~s-~dg~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~-~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 141 AWA-RDGSKLYGL--GRDLHVMDPEAGT--LVEDKPIQSW-EAETYAQPD------VLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp EEC-TTSSCEEEE--SSSEEEEETTTTE--EEEEECSTTT-TTTTBCCCB------CCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred EEC-CCCCEEEEe--CCeEEEEECCCCc--Eeeeeecccc-CCCceeCCC------ccEEeeeccCCCceeeeeeccccc
Confidence 999 788888887 6889999997443 3444443321 123477777 34333322 222
Q ss_pred -----------eEEEEEeeCCCce-EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342 293 -----------SVKLWNIKENKPV-HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA 360 (401)
Q Consensus 293 -----------~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 360 (401)
.|.+||+.+++.. ..+..+...+.+++|+|+++ +++++ ++.|.+||+.+++....+ .....
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~~----~~~~~ 281 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRV----PLPHS 281 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEE----ECSSC
T ss_pred cccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCCcCccee----cCCCc
Confidence 5789999888764 23445666788999999998 55555 789999999887654333 23456
Q ss_pred eEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342 361 LSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~ 399 (401)
+.+++|+|+|++|++++.++.|++||+.+++ .+..++
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~--~~~~~~ 318 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLE--KKGQVD 318 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCC--EEEEEE
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCc--EEEEEE
Confidence 7899999999999999999999999999874 444443
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.8e-24 Score=183.60 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=167.0
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEe--cC
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT--YS 140 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~d 140 (401)
|...|.+++|+|++++|++++ ++.|.+||+.+ ++........+...+.+++|+|++ .+|++++ .+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~ 107 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEF 107 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-----------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTT
T ss_pred CCcceEeeEECCCCCEEEEEc-----------CCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCC
Confidence 447799999999999999887 78999999997 654432222224678999999988 5666666 33
Q ss_pred CeEEEEEC--CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 141 GQIVLWDT--RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 141 g~v~iw~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
+...||.+ .++... .+ .+...+..++| +|++..|+ +++.++.+.+|+++...... .. ...
T Consensus 108 ~~~~l~~~~~~~~~~~-------~~-~~~~~~~~~~~--spdg~~l~~~~~~~~~~~l~~~~~~~~~~--~~-----~~~ 170 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTPR-------LM-TKNLPSYWHGW--SPDGKSFTYCGIRDQVFDIYSMDIDSGVE--TR-----LTH 170 (297)
T ss_dssp SSCEEEEEETTCCCCE-------EC-CSSSSEEEEEE--CTTSSEEEEEEEETTEEEEEEEETTTCCE--EE-----CCC
T ss_pred CcceEEEEECCCCceE-------Ee-ecCCCccceEE--CCCCCEEEEEECCCCceEEEEEECCCCcc--eE-----ccc
Confidence 45555555 443321 11 22334888999 99999877 77889999999976422211 12 223
Q ss_pred CccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----
Q psy17342 218 KNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----- 291 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----- 291 (401)
+...+.+++|+ ++++.+++++ .++.+.+|++.... .....+..|...+.++.|+|+ +++|++++.+
T Consensus 171 ~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 171 GEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPS------GDKVVFVSYDADVFD 242 (297)
T ss_dssp SSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTT------SSEEEEEEEETTCCS
T ss_pred CCCccccceEC-CCCCEEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCC------CCEEEEEEcCCCCCc
Confidence 56688999999 7888777665 58888898875322 245667778888999999998 7888877765
Q ss_pred ------CeEEEEEeeCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342 292 ------WSVKLWNIKENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA 334 (401)
Q Consensus 292 ------~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d 334 (401)
+.|.+||+.+++.. ..+..|...+..++|+|+++ .|++++.+
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD-EFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC-EEEEEEec
Confidence 56999999887663 34447788899999999998 45555544
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.1e-23 Score=200.80 Aligned_cols=327 Identities=7% Similarity=-0.018 Sum_probs=202.4
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+.++++ +.||.+++||....+....+ ..+. .....|.+++|||||++|+
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------~~~~-~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------EGKK-IESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE------------------------CTTT-TTTTTCSEEEECTTSSEEE
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe------------------------cccc-ccccccceEEECCCCCEEE
Confidence 46666776665 67999999998766521111 0000 0012489999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~ 159 (401)
+++... .....+.++.+.+||+.+++.. .+.. .+...+..++|+|+| +.|+.++ ++.|++|++.+++.....
T Consensus 77 ~~~~~~-~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~g~~~~~~-- 150 (723)
T 1xfd_A 77 FSYNVE-PIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVV-- 150 (723)
T ss_dssp EEESCC-CCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEE--
T ss_pred EEecCc-cceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCC-CEEEEEE-CCeEEEEECCCCceEEEe--
Confidence 987211 0001112489999999977641 1111 123348899999988 5666665 489999999887653221
Q ss_pred cccccCCCC------------------cEEEEEEeecCCceEEEEEeCCC------------------------------
Q psy17342 160 PLSVMAHTH------------------PVFCMSVIGTQNAHNLISISNDG------------------------------ 191 (401)
Q Consensus 160 ~~~~~~~~~------------------~v~~~~~~~~~~~~~l~s~~~dg------------------------------ 191 (401)
..+.. .+.+++| +|+++.|++++.|+
T Consensus 151 ----~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 151 ----STGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp ----CCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ----cCCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 12222 2378999 99999999987553
Q ss_pred ----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecC-
Q psy17342 192 ----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEG- 262 (401)
Q Consensus 192 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~- 262 (401)
.|.+||+....... .+.... ....+...+..++|+ |+++.+++... +..|++||+.+.+ ....+..
T Consensus 225 ~~~~~l~~~d~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~ 299 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHDL-EMMPPD-DPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDE 299 (723)
T ss_dssp CCEEEEEEEESSSSCCCE-ECCCCC-CGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEE
T ss_pred CCeeEEEEEECCCCceeE-EeeCCc-cCCCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCc--ceEEEEec
Confidence 68889987532111 111100 011235678999999 78988876643 3579999987543 3333332
Q ss_pred CCCcee----eeecCccCCCCCCCcEEEE--EeCCC------eEEEEE-eeCCCc--eEEEeecCCceEE-EEECCCCCc
Q psy17342 263 HEGPVV----GLSSHRAQGHIDFSHLYLT--SSYDW------SVKLWN-IKENKP--VHSFNEFRDYVMD-VQWSPINPA 326 (401)
Q Consensus 263 ~~~~v~----~i~~~~~~~~~~~~~~l~s--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~v~~-v~~~~~~~~ 326 (401)
+...+. .++|+|+ ++.|+. +..++ .|.+|| ...++. ...+..+...+.. ++|+|+++.
T Consensus 300 ~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKD------GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp CSSCCCCCCCCCEECTT------SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred cCCEEeccCCCceEcCC------CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE
Confidence 334443 7899998 565554 45577 566677 333431 4455543444554 699999985
Q ss_pred EEEEEecC--CEEEEEeCCCCCC--CcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342 327 LFATVEVA--GRVDLWNLNLDTE--VPATSAIVEGAPALSRVTWTPNGTQLCVGD 377 (401)
Q Consensus 327 ~l~~~~~d--~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 377 (401)
+++++..+ +.++||++..... ...+.....+...+..++|+|||++|+...
T Consensus 374 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 54555555 7899999875432 111110001455688999999999887654
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3.1e-24 Score=206.51 Aligned_cols=291 Identities=8% Similarity=0.022 Sum_probs=196.3
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---CeeEEEEeCCCCceEEEEecC---
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---PVLSCCFAKFNPYLILGGTYS--- 140 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~g~~d--- 140 (401)
.+.+++|+|+|+++++ + .|+.|++||+.+++....+ ..+.. .|.+++|||++ ++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~----------~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----------QKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPDR-EYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----------SSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTTS-SEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-e----------CCCCEEEEECCCCcEEEEe-ccccccccccceEEECCCC-CEEEEEecCccc
Confidence 3678899999996655 5 5899999999987654322 22232 49999999988 566666553
Q ss_pred ------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342 141 ------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214 (401)
Q Consensus 141 ------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 214 (401)
+.+.+||+.+++.... .....|...+..++| +|+|+.|+.++. +.|.+||+.... ...........
T Consensus 85 ~~~~~~~~i~~~d~~~~~~~~l----~~~~~~~~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~ 156 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDPQSL----DPPEVSNAKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEG 156 (723)
T ss_dssp SSSCCCSEEEEEESSSCCCEEC----CCTTCCSCCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTT
T ss_pred eeecceeeEEEEECCCCceEec----cCCccccccccccEE--CCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCC
Confidence 7899999988764211 112355566888999 999999999886 789999987632 22211110000
Q ss_pred --ccCC---------ccceEEEEeccCCCCeEEEEcCCc----------------------------------eEEEEeC
Q psy17342 215 --KQTK---------NLAVLSLAFPQNDVNNFVVGCEDG----------------------------------NVYSACR 249 (401)
Q Consensus 215 --~~~~---------~~~v~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~~~ 249 (401)
..++ ...+.+++|+ |+++.|++++.++ .|++||+
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred ceECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 0000 0134789999 8999998887543 7899998
Q ss_pred CCCCCCceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeC----CCeEEEEEeeCCCceEEEee-cCCceE--
Q psy17342 250 HGNKAGNVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSY----DWSVKLWNIKENKPVHSFNE-FRDYVM-- 316 (401)
Q Consensus 250 ~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~-~~~~v~-- 316 (401)
.+.. ....+..+ ...+.+++|+|+ ++++++.+. +..|++||+.+++....+.. +...+.
T Consensus 236 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~SpD------g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 236 NGPT--HDLEMMPPDDPRMREYYITMVKWATS------TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (723)
T ss_dssp SSSC--CCEECCCCCCGGGSSEEEEEEEESSS------SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CCCc--eeEEeeCCccCCCccceeEEEEEeCC------CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence 7543 22344433 677899999998 788876653 35799999998887666554 334443
Q ss_pred --EEEECCCCCcEEEE-EecCC------EEEEEeC-CCCCC--CcceEEeecCCCCeEE-EEecCCCcEEEEEecC---C
Q psy17342 317 --DVQWSPINPALFAT-VEVAG------RVDLWNL-NLDTE--VPATSAIVEGAPALSR-VTWTPNGTQLCVGDEK---G 380 (401)
Q Consensus 317 --~v~~~~~~~~~l~~-~~~d~------~i~iwd~-~~~~~--~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~d---g 380 (401)
.++|+|+|+.+++. +..++ .|.+||+ ..+.. ...+. .+...+.. ++|+|||+.|+..+.+ +
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 384 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT---SGDWDVTKILAYDEKGNKIYFLSTEDLPR 384 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC---CSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee---cCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence 78999999865554 55677 5777773 33330 22221 22334544 6999999999766554 7
Q ss_pred cEEEEEeccC
Q psy17342 381 AITMFDVGEV 390 (401)
Q Consensus 381 ~v~iw~~~~~ 390 (401)
.+++|++...
T Consensus 385 ~~~l~~~~~~ 394 (723)
T 1xfd_A 385 RRQLYSANTV 394 (723)
T ss_dssp CCEEEEECSS
T ss_pred ceEEEEEeCC
Confidence 8999999754
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.5e-23 Score=207.46 Aligned_cols=293 Identities=9% Similarity=-0.006 Sum_probs=208.3
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCe-------eEEEEeCCCCceEEE
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV-------LSCCFAKFNPYLILG 136 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~ 136 (401)
|...+.+++|||||+.|+.++.... ...+..|++|++.+++. .....|...+ .+++|+|++. ++++
T Consensus 51 ~~~~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~ 123 (1045)
T 1k32_A 51 NLGVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEI--KRITYFSGKSTGRRMFTDVAGFDPDGN-LIIS 123 (1045)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEE--EECCCCCEEEETTEECSEEEEECTTCC-EEEE
T ss_pred CCCcccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCe--EEcccCCCcccccccccccccCCCCCE-EEEE
Confidence 5678999999999999998873100 00235899999986542 2223455566 8999999985 8887
Q ss_pred EecC------CeEEEEECCCCCCCceee-------------------------------------------ccccccCCC
Q psy17342 137 GTYS------GQIVLWDTRVQKKTPVHR-------------------------------------------TPLSVMAHT 167 (401)
Q Consensus 137 g~~d------g~v~iw~~~~~~~~~~~~-------------------------------------------~~~~~~~~~ 167 (401)
++.+ ..|.+|++.++....... ....+..|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7644 357778876543211000 001124577
Q ss_pred CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEE
Q psy17342 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSA 247 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~ 247 (401)
..+.++.| +++ ..+++++.|+.+.+|.+...+.... .+. .+. .+...+|+ ++++.++.+ .++.|++|
T Consensus 204 ~~v~~~~~--s~d-~l~~~~~~dg~~~l~~~~~~g~~~~--~l~-----~~~-~~~~~~~S-pDG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 204 THVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLR--KHT-----SFT-DYYPRHLN-TDGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp SCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCE--ECC-----CCC-SSCEEEEE-ESSSCEEEE-ETTEEEEE
T ss_pred CcccceEE--eCC-EEEEEEeccCceEEEEEeCCCCcce--Eec-----CCC-CcceeeEc-CCCCEEEEE-eCCEEEEe
Confidence 78888888 666 6777888899999998764222211 111 122 35667899 789988887 48999999
Q ss_pred eCCCCCCCceeeecC-----------CCCceeeeecC-ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC-c
Q psy17342 248 CRHGNKAGNVECYEG-----------HEGPVVGLSSH-RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-Y 314 (401)
Q Consensus 248 ~~~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 314 (401)
+.... .+..+.+ |...+.+++|+ |+ ++.+++++ ++.|.+|++..++.. .+..|.. .
T Consensus 271 d~~~~---~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd------G~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~ 339 (1045)
T 1k32_A 271 NPDTE---KIEKIEIGDLESPEDRIISIPSKFAEDFSPLD------GDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR 339 (1045)
T ss_dssp CTTTC---CEEECCCCCCCBCCSEEEECGGGGEEEEEECG------GGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred cCCce---EeeeeccCcccccccccccccccceeeecCCC------CCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence 98422 2334443 34578999999 98 78888887 889999999876543 4666777 8
Q ss_pred eEEEEECCCCCcEEEEEecCCEEE-EEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccc
Q psy17342 315 VMDVQWSPINPALFATVEVAGRVD-LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIA 393 (401)
Q Consensus 315 v~~v~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~ 393 (401)
+..++|+ +|+ .++.++.++.+. +||+..++... . ..+...+..++|+|||++|++++.++.|++||+.+++..
T Consensus 340 ~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~~~~---l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 340 YVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGKAEK---F-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 413 (1045)
T ss_dssp EEEECSS-SEE-EEEEEETTEEEEEEEETTTCCEEE---C-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEeeeEc-CCC-eEEEEECCCceEEEEECCCCCceE---e-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence 9999999 987 577777788888 99988754321 1 255678999999999999999999999999999988543
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.6e-22 Score=175.86 Aligned_cols=278 Identities=9% Similarity=-0.002 Sum_probs=186.3
Q ss_pred ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342 8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87 (401)
Q Consensus 8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 87 (401)
..+++++.++.+++||....+.+..+ . .+...+ +++|+|+++++++++.
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~----~~~~~~-~~~~s~dg~~l~~~~~-- 59 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQI------------------------T----LGYDFV-DTAITSDCSNVVVTSD-- 59 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEE------------------------E----CCCCEE-EEEECSSSCEEEEEES--
T ss_pred EEEEEecCCCeEEEEeCcccceeeeE------------------------E----ccCCcc-eEEEcCCCCEEEEEeC--
Confidence 34678888999999998765511111 0 112445 9999999998888882
Q ss_pred CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC---eEEEEECCCCCCCceeecccccc
Q psy17342 88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---QIVLWDTRVQKKTPVHRTPLSVM 164 (401)
Q Consensus 88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~v~iw~~~~~~~~~~~~~~~~~~ 164 (401)
.++.|.+||..+++........+..+..+++|+|++ ++++++..++ .|.+||+.+++.... .
T Consensus 60 -------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~-------~ 124 (331)
T 3u4y_A 60 -------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIST-------I 124 (331)
T ss_dssp -------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEE-------E
T ss_pred -------CCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEE-------E
Confidence 588999999998765222223334455559999988 5555555443 899999987764322 1
Q ss_pred CCCCcEEEEEEeecCCceEEEEE-eCCCc-EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCC
Q psy17342 165 AHTHPVFCMSVIGTQNAHNLISI-SNDGR-LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCED 241 (401)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~~l~s~-~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d 241 (401)
.+.....+++| +|++++++++ ..++. +.+|++...+...... .. .......+..++|+ ++++++ +++..+
T Consensus 125 ~~~~~~~~~~~--spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~---~~~~~~~~~~~~~s-pdg~~l~v~~~~~ 197 (331)
T 3u4y_A 125 PIPYDAVGIAI--SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE---FISGGTRPFNITFT-PDGNFAFVANLIG 197 (331)
T ss_dssp ECCTTEEEEEE--CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE---EECSSSSEEEEEEC-TTSSEEEEEETTT
T ss_pred ECCCCccceEE--CCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc---cccCCCCccceEEC-CCCCEEEEEeCCC
Confidence 23345689999 9999855554 55688 9999997532221110 00 11234457899999 788855 455578
Q ss_pred ceEEEEeCCCCCC-CceeeecCCCCceeeeecCccCCCCCCCcEEEEE-eCCCeEEEEEeeCCCc--eEEEeec----CC
Q psy17342 242 GNVYSACRHGNKA-GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKP--VHSFNEF----RD 313 (401)
Q Consensus 242 ~~i~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~--~~~~~~~----~~ 313 (401)
+.|++||+...+. ..+..+.. ...+..++|+|+ +++++.+ ..++.|.+||+.+++. +..+..+ ..
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spd------g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRD------GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTT------SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred CeEEEEECCCCcccceeeeccC-CCCCceEEECCC------CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence 9999999874432 11555553 466789999998 6755544 4578899999988776 4433322 22
Q ss_pred ---ceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 314 ---YVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 314 ---~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
....++|+|+++.+++++..++.|.+||+...
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 23458999999866667777789999999864
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.1e-23 Score=183.46 Aligned_cols=276 Identities=7% Similarity=-0.038 Sum_probs=189.5
Q ss_pred ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccccccc-ceEEEEecCCCCCeEEEEec
Q psy17342 8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR-NVTYMDWSTQHPELLLASYH 86 (401)
Q Consensus 8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~ 86 (401)
+.+++++.++.+++||....+.+..+ .. .+.. .+.+++|+|+++.++++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~~---~~~~~~~~~~~~s~dg~~l~v~~~- 53 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVI------------------------TI---ADAGPTPMVPMVAPGGRIAYATVN- 53 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE------------------------EC---TTCTTCCCCEEECTTSSEEEEEET-
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEE------------------------Ec---CCCCCCccceEEcCCCCEEEEEeC-
Confidence 46889999999999997654411110 00 1111 3778999999988877772
Q ss_pred cCCCCCCCCCcEEEEEeCcCCCCCceEEEecC----CCeeEEEEeCCCCceEEEEe------------cCCeEEEEECCC
Q psy17342 87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ----SPVLSCCFAKFNPYLILGGT------------YSGQIVLWDTRV 150 (401)
Q Consensus 87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~------------~dg~v~iw~~~~ 150 (401)
.++.|.+||+.+++.+..+...+. ..+..++|+|++ +.++++. .++.|.+||+.+
T Consensus 54 --------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 124 (337)
T 1pby_B 54 --------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET 124 (337)
T ss_dssp --------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred --------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC
Confidence 678999999988776554443321 267889999988 4555554 469999999987
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN 230 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (401)
++..... .....+.+++| +|++++++++ ++.|.+||+.... ........ .... .+.|+ +
T Consensus 125 ~~~~~~~-------~~~~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~-----~~~~---~~~~s-~ 183 (337)
T 1pby_B 125 LSRRKAF-------EAPRQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQ-----SWEA---ETYAQ-P 183 (337)
T ss_dssp TEEEEEE-------ECCSSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTE-EEEEECST-----TTTT---TTBCC-C
T ss_pred CcEEEEE-------eCCCCcceeEE--CCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecc-----ccCC---CceeC-C
Confidence 6543211 12345677888 9999988888 6899999997532 11111111 0011 22567 5
Q ss_pred CCCeEEEEcCC-c-----------------------eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342 231 DVNNFVVGCED-G-----------------------NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 231 ~~~~l~~~~~d-~-----------------------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
++..+++.+.. + .|.+||....+.. ...+..+...+.+++|+|+ +++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~d------g~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPA------KTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTT------SSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCC------CCEEE
Confidence 66655444322 2 4688998755432 3344556677889999998 67887
Q ss_pred EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 352 (401)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|+++ .+++++.++.|++||+.+++.+..+.
T Consensus 257 ~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCC-EEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 77 79999999998888877765 45678999999998 56667889999999999887655443
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1.1e-21 Score=172.71 Aligned_cols=294 Identities=9% Similarity=0.043 Sum_probs=186.9
Q ss_pred cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC----CeEEEEE
Q psy17342 74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS----GQIVLWD 147 (401)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----g~v~iw~ 147 (401)
.+...++++++|. .+.++.|.+|+++ +++....... +...+..++|+|++ ++|++++.+ +.|.+|+
T Consensus 10 ~~~~~~~~vg~y~------~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 10 TDSELTMLVGTYT------SGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp GGGEEEEEEEECC------SSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEE
T ss_pred CCCceEEEEEecc------CCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEE
Confidence 3445567778752 2357789999875 3443333333 56778889999988 566666654 7999999
Q ss_pred CCCC--CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccc------cccCC
Q psy17342 148 TRVQ--KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYN------NKQTK 218 (401)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~------~~~~~ 218 (401)
++.. ..... .....+......+++ ++.++++++ .++.+.+|++...+........... ....+
T Consensus 82 ~~~~~g~~~~~----~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 82 FDKEKGTLHLL----NTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT 153 (361)
T ss_dssp EETTTTEEEEE----EEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred EeCCCCcEEEe----eEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence 8764 22111 112234455666665 666666665 6889999999753322221111000 00112
Q ss_pred ccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCC----C-c------eeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKA----G-N------VECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~----~-~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
...+.+++|+ |++++++++ ..++.|++|++..... + . ......+......++|+|+ +++++
T Consensus 154 ~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~ 226 (361)
T 3scy_A 154 MPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------GKFAY 226 (361)
T ss_dssp SCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------SSEEE
T ss_pred CCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------CCEEE
Confidence 3346889999 788866554 5588999998875432 1 1 1112234455788999998 67776
Q ss_pred EEe-CCCeEEEEEeeCCCc--eEEEee---cCCceEEEEECCCCCcEEEEEec-CCEEEEEeCC--CCCCCcceEEeecC
Q psy17342 287 TSS-YDWSVKLWNIKENKP--VHSFNE---FRDYVMDVQWSPINPALFATVEV-AGRVDLWNLN--LDTEVPATSAIVEG 357 (401)
Q Consensus 287 s~~-~d~~i~iwd~~~~~~--~~~~~~---~~~~v~~v~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~~ 357 (401)
+++ .++.|.+||+.+++. +..+.. +......++|+|+|+.++++... ++.|.+|++. +++. ..... ...
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-~~~~~-~~~ 304 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-TKVGY-QLT 304 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-EEEEE-EEC
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-EEeeE-ecC
Confidence 666 689999999987654 222322 23456799999999854455555 5899999996 3332 12221 122
Q ss_pred CCCeEEEEecCCCcEEEEEe-cCCcEEEEEec--cCcc
Q psy17342 358 APALSRVTWTPNGTQLCVGD-EKGAITMFDVG--EVGI 392 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~--~~~~ 392 (401)
...+..++|+|+|++|++++ .++.|.+|++. ++++
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 45678999999999988887 67889997665 5543
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=7.6e-23 Score=203.98 Aligned_cols=283 Identities=11% Similarity=0.034 Sum_probs=206.5
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----------ecCCCeeEEEEe-CCCCceEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----------FCQSPVLSCCFA-KFNPYLIL 135 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~~l~ 135 (401)
.+...+|+|+|+.|+.+. ++.|.+|++.... +..+.. .+...+.+++|+ |++ ..|+
T Consensus 246 ~~~~~~~SpDG~~la~~~-----------~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la 312 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSK-----------GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIA 312 (1045)
T ss_dssp SSCEEEEEESSSCEEEEE-----------TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEE
T ss_pred CcceeeEcCCCCEEEEEe-----------CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCC-CEEE
Confidence 356679999999999887 8999999984322 211110 123368999999 988 5666
Q ss_pred EEecCCeEEEEECCCCCCCceeeccccccCCCC-cEEEEEEeecCCceEEEEEeCCCcEE-EeeccCCCCCccccccccc
Q psy17342 136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTH-PVFCMSVIGTQNAHNLISISNDGRLC-SWSLEMLSSPQETRDLQYN 213 (401)
Q Consensus 136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~-~wd~~~~~~~~~~~~~~~~ 213 (401)
.++ ++.|.+|+...+... .+..|.. .+..++| + ++..|++++.++.+. +|++... ... .
T Consensus 313 ~~~-~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~--s-dg~~l~~~s~~~~l~~~~d~~~~-~~~---~---- 373 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYVL-------KVPEPLRIRYVRRGG--D-TKVAFIHGTREGDFLGIYDYRTG-KAE---K---- 373 (1045)
T ss_dssp EEE-TTEEEEECTTSSBEE-------ECSCCSCEEEEEECS--S-SEEEEEEEETTEEEEEEEETTTC-CEE---E----
T ss_pred EEE-cCEEEEEcCCCCceE-------EccCCCcceEEeeeE--c-CCCeEEEEECCCceEEEEECCCC-Cce---E----
Confidence 665 889999998876532 2356677 8899999 8 999999999888888 8887642 111 1
Q ss_pred cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-
Q psy17342 214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW- 292 (401)
Q Consensus 214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~- 292 (401)
..++...+..++|+ |+++.|++++.++.|++||+.... ......+|...+.+++|+|+ +++|++++.++
T Consensus 374 -l~~~~~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~SpD------G~~la~~~~~~~ 443 (1045)
T 1k32_A 374 -FEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGK--PTVIERSREAMITDFTISDN------SRFIAYGFPLKH 443 (1045)
T ss_dssp -CCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECTT------SCEEEEEEEECS
T ss_pred -ecCCccceeeeEEC-CCCCEEEEECCCCeEEEEECCCCc--eEEeccCCCCCccceEECCC------CCeEEEEecCcc
Confidence 11366789999999 899999999999999999997443 44555579999999999999 78888877644
Q ss_pred ---------eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC----------------
Q psy17342 293 ---------SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE---------------- 347 (401)
Q Consensus 293 ---------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------- 347 (401)
.|++||+.+++ +..+..|...+..++|+|+|+ .|+.++.++...+|+......
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred ccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 89999998876 667777888899999999998 677777776666665432111
Q ss_pred --C----------------------cceEEeecCCCCeEEEEecCCCcEEEE-------------EecCCcEEEEEeccC
Q psy17342 348 --V----------------------PATSAIVEGAPALSRVTWTPNGTQLCV-------------GDEKGAITMFDVGEV 390 (401)
Q Consensus 348 --~----------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~-------------~~~dg~v~iw~~~~~ 390 (401)
. ........+...+..++++|||.++++ ......|++||+.++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0 011111123466889999999988875 122456888888887
Q ss_pred ccc
Q psy17342 391 GIA 393 (401)
Q Consensus 391 ~~~ 393 (401)
+.+
T Consensus 602 ~~~ 604 (1045)
T 1k32_A 602 KVT 604 (1045)
T ss_dssp CEE
T ss_pred cEE
Confidence 644
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.6e-22 Score=177.16 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=181.6
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR 149 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~ 149 (401)
.+++++++..+++++ .++.|.+||..+++....+..+....+..++|+|++..+++++..++.|.+||+.
T Consensus 4 g~~~~~~~~~~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CCCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cccccCCCEEEEEeC----------CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 356788888888888 7999999999987665544433222688999999885566677778999999998
Q ss_pred CCCCCceeeccccccCC-----CCcEEEEEEeecCCceEEEEEeCC------------CcEEEeeccCCCCCcccccccc
Q psy17342 150 VQKKTPVHRTPLSVMAH-----THPVFCMSVIGTQNAHNLISISND------------GRLCSWSLEMLSSPQETRDLQY 212 (401)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~~wd~~~~~~~~~~~~~~~ 212 (401)
+++...... . .+ ...+..++| +|+++++++++.+ +.|.+||+.+..... .....
T Consensus 74 t~~~~~~~~----~-~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~- 144 (349)
T 1jmx_B 74 TCKNTFHAN----L-SSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTF- 144 (349)
T ss_dssp TTEEEEEEE----S-CCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEE-
T ss_pred CCcEEEEEE----c-ccccccccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc-eeeec-
Confidence 765432211 1 11 223678888 9999999998865 899999997522111 11111
Q ss_pred ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC------------------------cee
Q psy17342 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG------------------------PVV 268 (401)
Q Consensus 213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------------~v~ 268 (401)
.+...+.+++|+ ++++ +++++. .|++||....+ ....+..+.. ...
T Consensus 145 ----~~~~~~~~~~~s-~dg~-l~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 145 ----PMPRQVYLMRAA-DDGS-LYVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp ----ECCSSCCCEEEC-TTSC-EEEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred ----cCCCcccceeEC-CCCc-EEEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 123358889999 7888 555544 49999987433 3334332210 122
Q ss_pred eeecCccCCCC----CC-CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC-CCCcEEEEEecCCEEEEEeC
Q psy17342 269 GLSSHRAQGHI----DF-SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP-INPALFATVEVAGRVDLWNL 342 (401)
Q Consensus 269 ~i~~~~~~~~~----~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~ 342 (401)
.+++.++.... .. ..++.....++.+++|++ ..+...+.+++|+| +++ +++++ ++.|.+||+
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~ 282 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDL 282 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT-EEEEE--ESEEEEEET
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC-EEEEE--cCeEEEEEC
Confidence 23333221000 00 001112222344444443 22456788999999 997 55655 889999999
Q ss_pred CCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342 343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
.+++....+. ....+.+++|+|+|++|++++.++.|++||+.++ +.++.+
T Consensus 283 ~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~--~~~~~~ 332 (349)
T 1jmx_B 283 KQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNI 332 (349)
T ss_dssp TTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT--EEEEEE
T ss_pred ccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEecccc--ceeeee
Confidence 9876444332 2345778999999999998888999999999887 445444
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=4.1e-23 Score=198.12 Aligned_cols=287 Identities=12% Similarity=0.081 Sum_probs=189.6
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecC-----------------CCeeEEEEeCC
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQ-----------------SPVLSCCFAKF 129 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~-----------------~~v~~~~~~~~ 129 (401)
+..+.|. +..+++.+ .++ | +||+.+++.+ ..+ +.+. ..|.+++|+|+
T Consensus 28 ~~~~~w~--g~~~~~~~----------~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd 92 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIE----------GDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR 92 (706)
T ss_dssp CTTCEEE--TTEEEEEE----------TTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETTT
T ss_pred CCCCcCc--CCeEEEEe----------CCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECCC
Confidence 5567788 66777777 577 8 9999988763 333 3322 56999999998
Q ss_pred CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC-----CCCC
Q psy17342 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-----LSSP 204 (401)
Q Consensus 130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~ 204 (401)
..++++ .++.|++||+.+++... +..+...+.+++| +|+++.|+++ .++.|.+|++.. .. .
T Consensus 93 -~~~~~~--~~~~i~~~d~~~~~~~~-------l~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-~ 158 (706)
T 2z3z_A 93 -GLVVLF--TQGGLVGFDMLARKVTY-------LFDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSR-A 158 (706)
T ss_dssp -TEEEEE--ETTEEEEEETTTTEEEE-------EECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCC-C
T ss_pred -CeEEEE--ECCEEEEEECCCCceEE-------ccCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCC-c
Confidence 455555 36999999998765321 2345667888999 9999999985 679999999975 22 1
Q ss_pred ccccccccc-------cccCCccceEEEEeccCCCCeEEEEc---------------------------------CCceE
Q psy17342 205 QETRDLQYN-------NKQTKNLAVLSLAFPQNDVNNFVVGC---------------------------------EDGNV 244 (401)
Q Consensus 205 ~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------~d~~i 244 (401)
......... ....+...+.+++|+ |+++.|++++ .+..|
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 111111000 000011125889999 8999999887 45679
Q ss_pred EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCceEEEe-e-cCC---c
Q psy17342 245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPVHSFN-E-FRD---Y 314 (401)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~-~~~---~ 314 (401)
++||+.+.....+.....|...+.+++|+|+ ++.|++++.++ .|++||+.+++....+. . +.. .
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPD------ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTT------SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECC------CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 9999975432222222256778999999999 78888877665 89999999884444433 2 222 2
Q ss_pred eEEEEECC--CCCcEEEEEecCCEEEEEeCC-CCCCCcceEEeecCCCCeEE-EEecCCCcEEEEEec-CC----cEEEE
Q psy17342 315 VMDVQWSP--INPALFATVEVAGRVDLWNLN-LDTEVPATSAIVEGAPALSR-VTWTPNGTQLCVGDE-KG----AITMF 385 (401)
Q Consensus 315 v~~v~~~~--~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~-dg----~v~iw 385 (401)
+.+++|+| +|+ ++++++.|+.++||++. ++..... ...+...+.. ++|+|+|+.|+.++. ++ .|+.|
T Consensus 312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~---l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQ---VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEE---CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred cCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEe---cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 46789999 997 78888899999999876 3332222 2344556766 799999988766554 44 56666
Q ss_pred EeccCccce
Q psy17342 386 DVGEVGIAC 394 (401)
Q Consensus 386 ~~~~~~~~~ 394 (401)
|+.+++.++
T Consensus 388 d~~~~~~~~ 396 (706)
T 2z3z_A 388 DIKGGKTKD 396 (706)
T ss_dssp ETTCCCCEE
T ss_pred EcCCCCcee
Confidence 666654333
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.3e-23 Score=193.41 Aligned_cols=270 Identities=11% Similarity=0.050 Sum_probs=191.3
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC-CCeeEEEEeCCCCceEEEEec---C
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFNPYLILGGTY---S 140 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~---d 140 (401)
..+|.+++|+|||+.|+.++. .+++++||++++++.. ....+. ..+.+++|+|+ +++++++. +
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~---------~~g~~~lw~~~~g~~~--~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGF---------SEGSVNAYLYDGGETV--KLNREPINSVLDPHYGVG--RVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEE---------ETTEEEEEEEETTEEE--ECCSSCCSEECEECTTCS--EEEEEEECSTTS
T ss_pred ccchheeecCCCCCeEEEEEc---------cCCceeEEEEcCCCcE--eeecccccccccccCCCC--eEEEEeccCCCC
Confidence 357999999999999999883 4899999998654322 222334 57999999996 67777664 4
Q ss_pred CeEEEEECCC--CCCCceeeccccccCCCCcEEEEEEeecCCce--EEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342 141 GQIVLWDTRV--QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH--NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ 216 (401)
Q Consensus 141 g~v~iw~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 216 (401)
....+|.++. ...... +.. ...+...+| +++++ .+++++. +.+.+||+.+.. .. .+..
T Consensus 88 ~~~~l~~~~~~~~g~~~~------l~~-~~~~~~~~~--s~dg~~~~~~s~~~-~~~~l~d~~~g~-~~---~l~~---- 149 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQR------LEA-VKPMRILSG--VDTGEAVVFTGATE-DRVALYALDGGG-LR---ELAR---- 149 (582)
T ss_dssp CCEEEEEEETTSTTCCEE------CTT-SCSBEEEEE--EECSSCEEEEEECS-SCEEEEEEETTE-EE---EEEE----
T ss_pred cceEEEEEeccCCCcccc------ccC-CCCceeeee--CCCCCeEEEEecCC-CCceEEEccCCc-EE---Eeec----
Confidence 5566766544 222111 111 112335566 45553 4555444 455599987521 11 1111
Q ss_pred CCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~ 292 (401)
+.. .+++|+ |+++.+++++.+ +.|++||+.+.. ...+..|.+.+.+++|+|+ ++.|+++..++
T Consensus 150 -~~~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~SpD------G~~l~~~~~~~ 216 (582)
T 3o4h_A 150 -LPG--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISPG------MKVTAGLETAR 216 (582)
T ss_dssp -ESS--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECTT------SCEEEEEECSS
T ss_pred -CCC--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECCC------CCEEEEccCCC
Confidence 111 788999 899999988776 789999987543 3466788899999999999 78999888888
Q ss_pred --eEEEEEeeCCCceEEEeecCCceEEEE--------ECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeE
Q psy17342 293 --SVKLWNIKENKPVHSFNEFRDYVMDVQ--------WSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS 362 (401)
Q Consensus 293 --~i~iwd~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 362 (401)
.|++||+.+++.. .+..|...+..++ |+|+| .++++++.|+.+++|++ ++... .....+.
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~------~~~~~v~ 286 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE------APQGNHG 286 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC------CCSSEEE
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec------cCCCceE
Confidence 8999999988877 6777777777777 99999 58999999999999999 43222 1235688
Q ss_pred EEEecCCCcEEEEEecCCc---EEEEEecc
Q psy17342 363 RVTWTPNGTQLCVGDEKGA---ITMFDVGE 389 (401)
Q Consensus 363 ~~~~s~~g~~l~~~~~dg~---v~iw~~~~ 389 (401)
+++|+ +|+++++++.+.. +++|+..+
T Consensus 287 ~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 9999998887754 55565543
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=3.2e-22 Score=179.65 Aligned_cols=269 Identities=9% Similarity=0.035 Sum_probs=178.1
Q ss_pred cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC--------Ccee-eccccccCCC
Q psy17342 97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK--------TPVH-RTPLSVMAHT 167 (401)
Q Consensus 97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~--------~~~~-~~~~~~~~~~ 167 (401)
+.+++|+... . . ....++.+++++++ .++++++.++ +++|+...... .... ..+.....+.
T Consensus 23 ~~vri~~~~~-~-~------~~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPE-E-L------PKERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCS-S-C------CCSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCcc-c-c------CCCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 5678876531 1 1 13468899999976 6788887777 89987642211 0000 0001112456
Q ss_pred CcEEEEEEeecCCceEEE----EEeCCCcEEEeeccCCCC----C-ccccccccccccCCccceEEEEeccCCCCeEEEE
Q psy17342 168 HPVFCMSVIGTQNAHNLI----SISNDGRLCSWSLEMLSS----P-QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG 238 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~----s~~~dg~i~~wd~~~~~~----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 238 (401)
..|.+++| ++++.+|+ +++.|+.|++||++.... . .....+.. ..+|...|.+++|+|.++.+|+++
T Consensus 93 ~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 93 FPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp SCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCSGGGSEEEEEECSSCTTEEEEE
T ss_pred CcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--cCCCCCceEEEEECCCCCCEEEEE
Confidence 78999999 99999999 788899999999875310 1 11111111 445889999999995458899999
Q ss_pred cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------
Q psy17342 239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------ 312 (401)
Q Consensus 239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------ 312 (401)
+.||.|++||++.. .......+|...|.+++|+|+ +++|++|+.|++|++||.+ ++....+..|.
T Consensus 169 s~Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 169 LADGSIAVLQVTET--VKVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp ETTSCEEEEEESSS--EEEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred ECCCeEEEEEcCCC--cceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 99999999999854 334455678999999999999 7999999999999999998 66666665432
Q ss_pred -CceEEEEECCCCCcEEEEEecCC------EEEEEeCCCCCCC--cceEEee-------cCCCCeEEEEecCCCcEEEEE
Q psy17342 313 -DYVMDVQWSPINPALFATVEVAG------RVDLWNLNLDTEV--PATSAIV-------EGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 313 -~~v~~v~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~--~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~ 376 (401)
..|.+++|++++..+++....|| .+++|+++..+.. ..+.... ....+-..+.+-++.++++++
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~ 319 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA 319 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe
Confidence 37999999998863334444443 3899999865321 1221111 111222233333666666555
Q ss_pred ec-CCcEEEEEec
Q psy17342 377 DE-KGAITMFDVG 388 (401)
Q Consensus 377 ~~-dg~v~iw~~~ 388 (401)
+. .+.|.|....
T Consensus 320 s~~s~dv~vl~~~ 332 (434)
T 2oit_A 320 SAASTEVSILARQ 332 (434)
T ss_dssp ETTCSBCEEEEEC
T ss_pred cCCCCceeEEEec
Confidence 43 4446666543
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5e-21 Score=167.58 Aligned_cols=255 Identities=9% Similarity=0.102 Sum_probs=167.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
..+..++|+|+|+ |++++.. ..++.|.+|++.++....... ..+...+..++|+|++..+++++..++.|.
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 5577899999998 7776620 026899999997654322222 235678899999998844444444789999
Q ss_pred EEECCCC-CCCceeecccccc-------CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342 145 LWDTRVQ-KKTPVHRTPLSVM-------AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ 216 (401)
Q Consensus 145 iw~~~~~-~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 216 (401)
+|++... ....... .... .+...+.+++| +|+++.+++...++.|.+|++...+......... .
T Consensus 112 v~~~~~~g~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----~ 183 (347)
T 3hfq_A 112 VMKIAADGALTLTDT--VQHSGHGPRPEQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT----M 183 (347)
T ss_dssp EEEECTTSCEEEEEE--EECCCCCSSTTCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE----C
T ss_pred EEEeCCCCCeeecce--eecCCCCCCccccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE----c
Confidence 9999643 2211111 1111 12345889999 8999966666778899999998322222111111 1
Q ss_pred CCccceEEEEeccCCCCeEEE-EcCCceEEEEeCCCCCCC--ceeeecCCC------CceeeeecCccCCCCCCCcEE-E
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVV-GCEDGNVYSACRHGNKAG--NVECYEGHE------GPVVGLSSHRAQGHIDFSHLY-L 286 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~--~~~~~~~~~------~~v~~i~~~~~~~~~~~~~~l-~ 286 (401)
.....+..++|+ |+++++++ +..++.|.+|++...... .+..+.... ..+..++|+|+ +++| +
T Consensus 184 ~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v 256 (347)
T 3hfq_A 184 EAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD------GHFLYV 256 (347)
T ss_dssp CTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT------SCEEEE
T ss_pred CCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC------CCEEEE
Confidence 123357789999 78886555 567889999998742222 122222222 35788999999 6655 6
Q ss_pred EEeCCCeEEEEEeeCC---CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342 287 TSSYDWSVKLWNIKEN---KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343 (401)
Q Consensus 287 s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~ 343 (401)
+...++.|.+|++... +.+..+..+...+..++|+|+++.++++...++.|.+|++.
T Consensus 257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 6667899999999732 44455555566788999999998544444456999999554
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=9.6e-23 Score=183.02 Aligned_cols=212 Identities=13% Similarity=0.044 Sum_probs=155.6
Q ss_pred CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC-------ccccccccccccCCccceEEEEeccCCCCeEE----
Q psy17342 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP-------QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV---- 236 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~---- 236 (401)
..+..+++ ++++.++++++.++ +++|+....... .............+...|.+++|+ +++++|+
T Consensus 37 ~~~n~lav--s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAV--SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMM 112 (434)
T ss_dssp SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEE
T ss_pred CCccEEEE--ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEe
Confidence 35678888 88889999999988 888876431110 000000000012245679999999 7899998
Q ss_pred EEcCCceEEEEeCCCC-----CC-C---ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE
Q psy17342 237 VGCEDGNVYSACRHGN-----KA-G---NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS 307 (401)
Q Consensus 237 ~~~~d~~i~~~~~~~~-----~~-~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 307 (401)
+|+.|+.|++||+... .. + .+..+.+|...|.+++|+|.. +.+|++++.|++|++||++++..+..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-----PSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-----TTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-----CCEEEEEECCCeEEEEEcCCCcceee
Confidence 7889999999997642 11 1 145567899999999999975 68999999999999999998877767
Q ss_pred EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----cCCCCeEEEEecCCCcEEEEE-ecCCc-
Q psy17342 308 FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----EGAPALSRVTWTPNGTQLCVG-DEKGA- 381 (401)
Q Consensus 308 ~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~-~~dg~- 381 (401)
...|...|.+++|+|+|. +|++|+.||.|++||++ ++....+.... .|...+.+++|++++.++++. ..+|.
T Consensus 188 ~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp EECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred ccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 777889999999999997 78999999999999998 33322221111 112378999999999887653 34433
Q ss_pred -----EEEEEeccC
Q psy17342 382 -----ITMFDVGEV 390 (401)
Q Consensus 382 -----v~iw~~~~~ 390 (401)
+++|++...
T Consensus 266 ~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 266 ETSPDVVMALLPKK 279 (434)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCCceEEEEeccC
Confidence 899999865
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.4e-22 Score=192.10 Aligned_cols=340 Identities=10% Similarity=0.037 Sum_probs=207.2
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 81 (401)
.|..-+..++++ .||.+++||....+....+ ..+. .....|.+++|||||++|+
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~------------------------~~~~-~~~~~~~~~~~SpDg~~la 75 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTIL------------------------SNRT-MKSVNASNYGLSPDRQFVY 75 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSCCEEEEE------------------------CHHH-HHTTTCSEEEECTTSSEEE
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE------------------------cccc-ccccceeeEEECCCCCeEE
Confidence 355555444444 5889999988766521100 0000 0001388999999999999
Q ss_pred EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342 82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~ 161 (401)
+++.... ....+.++.|++||+++++......+ ...+..++|||+| +.|+.+ .++.|++|++.+++....
T Consensus 76 ~~~~~~~-~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG-~~la~~-~~~~i~~~~~~~g~~~~l----- 145 (719)
T 1z68_A 76 LESDYSK-LWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVG-SKLAYV-YQNNIYLKQRPGDPPFQI----- 145 (719)
T ss_dssp EEEEEEE-CSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSST-TCEEEE-ETTEEEEESSTTSCCEEC-----
T ss_pred EEecCce-eEEeecceEEEEEECCCCccccceec--CcccccceECCCC-CEEEEE-ECCeEEEEeCCCCCcEEE-----
Confidence 8872100 00001268999999998765211111 3568899999998 566665 478999999987764321
Q ss_pred cccCCCCcE-----------------EEEEEeecCCceEEEEEeCCC---------------------------------
Q psy17342 162 SVMAHTHPV-----------------FCMSVIGTQNAHNLISISNDG--------------------------------- 191 (401)
Q Consensus 162 ~~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg--------------------------------- 191 (401)
...++...| .+++| +|+|+.|++++.|.
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~ 223 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV 223 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence 112332222 47899 99999999987652
Q ss_pred -cEEEeeccCCCCCcccccccc-ccccCCccceEEEEeccCCCCeEEEEcCC----ceEEEEe----CCCCCCCceeee-
Q psy17342 192 -RLCSWSLEMLSSPQETRDLQY-NNKQTKNLAVLSLAFPQNDVNNFVVGCED----GNVYSAC----RHGNKAGNVECY- 260 (401)
Q Consensus 192 -~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~----~~~~~~~~~~~~- 260 (401)
.|.+||+..... .....+.. ..+..+...+.+++|+ |+++++++.... ..|++|| ..+.+ ....+
T Consensus 224 ~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--~~~~~~ 299 (719)
T 1z68_A 224 VRIFIIDTTYPAY-VGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQTWD--CPKTQE 299 (719)
T ss_dssp EEEEEEESSCHHH-HCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSSSEE--CCGGGE
T ss_pred eEEEEEECCCCCc-cceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCCCCc--eEEEEe
Confidence 678888875211 00011110 0022467789999999 677766664322 3488888 65433 22333
Q ss_pred ---cCCCCcee-----eeecCccCCCCCCCcEEE--EEeCCC--eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342 261 ---EGHEGPVV-----GLSSHRAQGHIDFSHLYL--TSSYDW--SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF 328 (401)
Q Consensus 261 ---~~~~~~v~-----~i~~~~~~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 328 (401)
.+|...+. .+.|+|+ ++.++ +...++ .|.+||+.+++ ...+..+...+..+.++ +++.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 300 HIEESRTGWAGGFFVSTPVFSYD------AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp EEEECSSSCSSSSSCCCCEECTT------SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred cccccCCceEccccCCccEECCC------CCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEE
Confidence 46777776 8899998 56443 344455 57777876665 45566556668887777 777566
Q ss_pred EEEec----CCEEEEEeCCC--CCC-CcceEE-eecCCCCeEEEEecCCCcEEEEE-ecC--CcEEEEEeccCc
Q psy17342 329 ATVEV----AGRVDLWNLNL--DTE-VPATSA-IVEGAPALSRVTWTPNGTQLCVG-DEK--GAITMFDVGEVG 391 (401)
Q Consensus 329 ~~~~~----d~~i~iwd~~~--~~~-~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~-~~d--g~v~iw~~~~~~ 391 (401)
+++.. ++..++|.+.. +.. ...+.. ..++...+..+.|+|++++++.. +.. ..+.+||+.+++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 66654 47888998764 211 111100 00134567889999999877743 333 468899987774
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8.7e-21 Score=166.35 Aligned_cols=251 Identities=11% Similarity=0.103 Sum_probs=178.1
Q ss_pred cCCCeeEEEEeCCCCceEEEEec------CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEE-EEEeC
Q psy17342 117 CQSPVLSCCFAKFNPYLILGGTY------SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNL-ISISN 189 (401)
Q Consensus 117 ~~~~v~~~~~~~~~~~~l~~g~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~ 189 (401)
....+..++|+|++..++++... ++.|.+||..+++..... .....+..++| +++++.+ ++...
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~--s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-------HNDLKPFGATI--NNTTQTLWFGNTV 109 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE-------EESSCCCSEEE--ETTTTEEEEEETT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-------ecCCCcceEEE--CCCCCEEEEEecC
Confidence 34678899999988544444322 678999999887643221 12234667888 8888855 45566
Q ss_pred CCcEEEeeccCCCCCcccccccccc--ccCCccceEEEEeccCCCCeEEEEc--CCceEEEEeCCCCCCCceeeecCCCC
Q psy17342 190 DGRLCSWSLEMLSSPQETRDLQYNN--KQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSACRHGNKAGNVECYEGHEG 265 (401)
Q Consensus 190 dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~ 265 (401)
++.|.+||..+.. ........... .......+.+++|+ ++++.++++. .++.|++||.... +....+..+..
T Consensus 110 ~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~ 185 (353)
T 3vgz_A 110 NSAVTAIDAKTGE-VKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNI--KLKTAIQNTGK 185 (353)
T ss_dssp TTEEEEEETTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTT--EEEEEECCCCT
T ss_pred CCEEEEEeCCCCe-eEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCC--ceEEEecCCCC
Confidence 7999999997632 22222221100 00011237889999 7888777665 5788999998743 34555654566
Q ss_pred ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee----cCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE----FRDYVMDVQWSPINPALFATVEVAGRVDLWN 341 (401)
Q Consensus 266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd 341 (401)
.+.+++|+|+ ++++++++.++.|.+||..+++.+..+.. +...+.+++|+|+++.++++...++.|.+||
T Consensus 186 ~~~~~~~s~d------g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 186 MSTGLALDSE------GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp TCCCCEEETT------TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred ccceEEECCC------CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 6889999998 78888888899999999999988877764 4556889999999986666666669999999
Q ss_pred CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEeccCc
Q psy17342 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDVGEVG 391 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~~~~ 391 (401)
+.+++....+.. + . ...++|+|+|+++++++ .++.|.+||+.+++
T Consensus 260 ~~~~~~~~~~~~--~--~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 260 TRNGNILAKVAA--P--E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp TTTCCEEEEEEC--S--S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCcEEEEEEc--C--C-CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 998776544432 2 2 25699999999666555 68999999998874
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=7.6e-20 Score=160.95 Aligned_cols=278 Identities=7% Similarity=-0.004 Sum_probs=173.6
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
..+..++|+|+|++|++++.. ...++.|.+|++... +........ +......+++ ++..++++...++.
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~------~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEF------SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS 121 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECC------SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred CCCceEEECCCCCEEEEEEcc------CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence 557789999999999999820 002389999998753 222222222 3456777787 56445555556889
Q ss_pred EEEEECCCCCCCceeec--------cccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCC------Cccc
Q psy17342 143 IVLWDTRVQKKTPVHRT--------PLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSS------PQET 207 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~------~~~~ 207 (401)
|.+|++........... +.....+...+.+++| +|+++++++++ .++.|.+|++..... ....
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 99999975432211100 0001223445688999 99998666554 588999999875332 1000
Q ss_pred ---cccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeee---cCCCCceeeeecCccCCCCC
Q psy17342 208 ---RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHID 280 (401)
Q Consensus 208 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~ 280 (401)
... .......+..++|+ ++++++++++ .++.|.+|++.......+..+ ..+......++|+|+
T Consensus 200 ~~~~~~----~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd----- 269 (361)
T 3scy_A 200 GTPEAF----KVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD----- 269 (361)
T ss_dssp EEEEEE----ECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----
T ss_pred ccccce----ecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----
Confidence 000 11234567899999 8898777666 689999999874332222222 233345679999999
Q ss_pred CCcEEEEEeC--CCeEEEEEee--CCC--ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC--CCCCCcceE
Q psy17342 281 FSHLYLTSSY--DWSVKLWNIK--ENK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN--LDTEVPATS 352 (401)
Q Consensus 281 ~~~~l~s~~~--d~~i~iwd~~--~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~ 352 (401)
+++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+|+|+.++++...++.|.+|++. +++......
T Consensus 270 -g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 347 (361)
T 3scy_A 270 -GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK 347 (361)
T ss_dssp -SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred -CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence 677766555 4899999996 344 3344444 45678999999998554444478999997554 444322110
Q ss_pred EeecCCCCeEEEEec
Q psy17342 353 AIVEGAPALSRVTWT 367 (401)
Q Consensus 353 ~~~~~~~~v~~~~~s 367 (401)
..+...+.++.|.
T Consensus 348 --~~~~~~p~~v~~~ 360 (361)
T 3scy_A 348 --DIKVDKPVCLKFV 360 (361)
T ss_dssp --CEECSSEEEEEEE
T ss_pred --eeeCCCCeEEEEc
Confidence 1123457788875
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=4.4e-20 Score=162.60 Aligned_cols=278 Identities=10% Similarity=0.042 Sum_probs=173.6
Q ss_pred cEEEEEeCc--CCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC-CCCCCceeeccccccCCCCcEE
Q psy17342 97 GVCLIWNTK--FKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR-VQKKTPVHRTPLSVMAHTHPVF 171 (401)
Q Consensus 97 ~~v~iwd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~v~ 171 (401)
+.|.+|+++ +++....... .....+..++|+|++ ++|++++.+ .|.+|++. +++...... ...+ +...
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~----~~~~-g~~~ 86 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEAS----HPIG-GHPR 86 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEE----EECC-SSGG
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeE----eecC-CCCc
Confidence 568887764 3332211111 123468899999988 667777766 99999997 544321111 1111 1234
Q ss_pred EEEEeecCCceE--EEEEe-------------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE
Q psy17342 172 CMSVIGTQNAHN--LISIS-------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236 (401)
Q Consensus 172 ~~~~~~~~~~~~--l~s~~-------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (401)
.++| +|++++ +++++ .+|.+.+|++...+.......... ..+...+.+++|+ |++++++
T Consensus 87 ~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~s-pdG~~l~ 160 (365)
T 1jof_A 87 ANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFD-PTETYLY 160 (365)
T ss_dssp GGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEEC-TTSSEEE
T ss_pred cEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEEC-CCCCEEE
Confidence 5777 899984 44543 688999999974232221111100 0134568899999 8898887
Q ss_pred EEc-CCceEEEEeCC-CCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEee--CCCce---E
Q psy17342 237 VGC-EDGNVYSACRH-GNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIK--ENKPV---H 306 (401)
Q Consensus 237 ~~~-~d~~i~~~~~~-~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~---~ 306 (401)
++. .++.|++|++. ..+...+..+. .|...+..++|+|+ ++++++++. ++.|.+|++. +++.. .
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------GNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC------CCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 765 46799999987 33222222333 24566889999999 677777665 7899999876 45442 1
Q ss_pred EEee-------cCC------ceEEEE-ECCCCCcEEEEEecCC-----EEEEEeCC-CCCCCcceEEeecCCCCeEEEEe
Q psy17342 307 SFNE-------FRD------YVMDVQ-WSPINPALFATVEVAG-----RVDLWNLN-LDTEVPATSAIVEGAPALSRVTW 366 (401)
Q Consensus 307 ~~~~-------~~~------~v~~v~-~~~~~~~~l~~~~~d~-----~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~ 366 (401)
.+.. |.. .+..++ |+|+|+.++++...++ .|.+|++. +++..........+...+..++|
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~ 314 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV 314 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence 2221 121 588999 9999984444333333 89999996 34322111111123344667899
Q ss_pred cC---CCcEEEEEecC-CcEEEEEeccCccc
Q psy17342 367 TP---NGTQLCVGDEK-GAITMFDVGEVGIA 393 (401)
Q Consensus 367 s~---~g~~l~~~~~d-g~v~iw~~~~~~~~ 393 (401)
+| ||++|++++.+ +.|.+|++....++
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~ 345 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEEEchhhCc
Confidence 99 89999998864 89999999876443
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=185.13 Aligned_cols=283 Identities=6% Similarity=-0.006 Sum_probs=187.1
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC----CCeeEEEEeCCCCceEEEEec------
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ----SPVLSCCFAKFNPYLILGGTY------ 139 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~~------ 139 (401)
+++|+|+|+ +++.+ .|+.|++||+.+++... ...+. ..+.+++|||++ ++|+.++.
T Consensus 20 ~~~~s~dg~-~~~~~----------~d~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWISGQE-YLHQS----------ADNNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESSSSE-EEEEC----------TTSCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSS
T ss_pred ccEECCCCe-EEEEc----------CCCCEEEEEcCCCcEEE--EEccccccccceeeEEECCCC-CeEEEEecCceeEE
Confidence 679999995 55555 58999999999776432 23322 248999999988 56666654
Q ss_pred ---CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc--c
Q psy17342 140 ---SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN--N 214 (401)
Q Consensus 140 ---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~--~ 214 (401)
++.|++||+.+++.... ......+..++| +|+|+.|+.+. ++.|++|++..... .....-... .
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~-------~~l~~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~v 154 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRG-------NELPRPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENKI 154 (719)
T ss_dssp SCEEEEEEEEETTTTEECCS-------SCCCSSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTTE
T ss_pred eecceEEEEEECCCCccccc-------eecCcccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCCe
Confidence 68999999988764110 011245788999 99999999986 77999999975322 111100000 0
Q ss_pred ccCCc---------cceEEEEeccCCCCeEEEEcCCc----------------------------------eEEEEeCCC
Q psy17342 215 KQTKN---------LAVLSLAFPQNDVNNFVVGCEDG----------------------------------NVYSACRHG 251 (401)
Q Consensus 215 ~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~~~~~ 251 (401)
..++. ....+++|+ ||++.|++++.|. .|++||+.+
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred EcccccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 00111 112589999 8999999887542 788999875
Q ss_pred CCCC---ce---eeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----CeEEEEE----eeCCCceEEE----eecCC
Q psy17342 252 NKAG---NV---ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----WSVKLWN----IKENKPVHSF----NEFRD 313 (401)
Q Consensus 252 ~~~~---~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~----~~~~~ 313 (401)
.... .+ ..+.+|...+.+++|+|+ ++++++.... ..|.+|| +.++++...+ ..|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD------~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~ 307 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTD------ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG 307 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSS------SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCC------CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc
Confidence 4310 01 223468888999999998 6777775432 2488899 7666655444 45666
Q ss_pred ceE-----EEEECCCCCcEEE-EEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----C
Q psy17342 314 YVM-----DVQWSPINPALFA-TVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----G 380 (401)
Q Consensus 314 ~v~-----~v~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g 380 (401)
.+. .+.|+|+|+.+++ +...+| .|.+||+.+++.. .+ ..+...+..+.++ +++.|+..+.+ +
T Consensus 308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~l---t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-QI---TSGKWEAINIFRV-TQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-EC---SCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-ec---ccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence 666 8899999985444 344555 5777787665421 11 2344557777777 87777666554 8
Q ss_pred cEEEEEecc
Q psy17342 381 AITMFDVGE 389 (401)
Q Consensus 381 ~v~iw~~~~ 389 (401)
.+++|.+..
T Consensus 383 ~~~l~~~~~ 391 (719)
T 1z68_A 383 RRNIYRISI 391 (719)
T ss_dssp CBEEEEEEC
T ss_pred eEEEEEEeC
Confidence 899999875
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=9.9e-21 Score=165.67 Aligned_cols=290 Identities=8% Similarity=-0.036 Sum_probs=175.9
Q ss_pred hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342 4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA 83 (401)
Q Consensus 4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 83 (401)
+.-+..+++++.++.+.+||....+.+..+ .. .....+..++|+|+++.++++
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~~---~~~~~~~~~~~s~dg~~~~v~ 60 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC------------------------VM---PDKFGPGTAMMAPDNRTAYVL 60 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEE------------------------EC---SSCCSSCEEEECTTSSEEEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEE------------------------ec---CCCCCCceeEECCCCCEEEEE
Confidence 344667888999999999998655411110 00 001146789999999877766
Q ss_pred EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-----CCCeeEEEEeCCCCceEEEEecC------------CeEEEE
Q psy17342 84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-----QSPVLSCCFAKFNPYLILGGTYS------------GQIVLW 146 (401)
Q Consensus 84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~~d------------g~v~iw 146 (401)
. ..++.|.+||+.+++........+ ...+..++|+|++ +++++++.+ +.|.+|
T Consensus 61 ~---------~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~ 130 (349)
T 1jmx_B 61 N---------NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVF 130 (349)
T ss_dssp E---------TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred e---------CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEE
Confidence 6 268999999998776554443322 2237899999988 566666544 899999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc-----------
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK----------- 215 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~----------- 215 (401)
|+.+++..... ....+...+.+++| ++++. +++++. .|.+||+.+.. ............
T Consensus 131 d~~~~~~~~~~----~~~~~~~~~~~~~~--s~dg~-l~~~~~--~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 131 STADGLEAKPV----RTFPMPRQVYLMRA--ADDGS-LYVAGP--DIYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EGGGGGGBCCS----EEEECCSSCCCEEE--CTTSC-EEEESS--SEEEECTTTCC-EEEEECSTTCCCTTBCCCBCCCC
T ss_pred ECCCcccccee----eeccCCCcccceeE--CCCCc-EEEccC--cEEEEeCCCCc-eeccccccccCCccccCccceee
Confidence 99875432111 11223346788889 89998 555544 49999987532 111111110000
Q ss_pred ---c---CCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCCCCCCceeeecCCCCceeeeecCc-cCCCCCCCcEEEE
Q psy17342 216 ---Q---TKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHGNKAGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLT 287 (401)
Q Consensus 216 ---~---~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s 287 (401)
. ........++++ +++.......... .+..++....+.. ...+..+...+.+++++| + ++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~d------g~~l~~ 272 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKD------PNQIYG 272 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSC------TTEEEE
T ss_pred ecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEE-ecccccCCCcceeeEecCCC------CCEEEE
Confidence 0 000023345555 2221110000011 1112344322211 112223556778999999 7 677777
Q ss_pred EeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 352 (401)
+ ++.|.+||+.+++.+..+.. ...+.+++|+|+++. |++++.++.|++||+.+++.+..+.
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred E--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeeee
Confidence 7 88999999999888877765 345789999999974 5557888999999998876554443
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=3.6e-20 Score=173.57 Aligned_cols=232 Identities=13% Similarity=0.042 Sum_probs=163.6
Q ss_pred CCCeeEEEEeCCCCceEEEEec-CCeEEEEECCCCCCCceeeccccccCCC-CcEEEEEEeecCCceEEEEEeC---CCc
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTY-SGQIVLWDTRVQKKTPVHRTPLSVMAHT-HPVFCMSVIGTQNAHNLISISN---DGR 192 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~---dg~ 192 (401)
..+|++++|+|||. .|+.++. +|+++||++.+++.. .+..|. ..+..++| +|+ ..+++++. +..
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~-------~lt~~~~~~~~~~~~--spd-~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETV-------KLNREPINSVLDPHY--GVG-RVILVRDVSKGAEQ 89 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEE-------ECCSSCCSEECEECT--TCS-EEEEEEECSTTSCC
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcE-------eeecccccccccccC--CCC-eEEEEeccCCCCcc
Confidence 46899999999984 5555554 999999998654422 123444 68899999 888 77777765 456
Q ss_pred EEEeeccC--CCCCccccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342 193 LCSWSLEM--LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269 (401)
Q Consensus 193 i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (401)
..+|.+.. .+... .+.. ...+...+|+ ++++ .+++...++.+.+||+.+.. ...+..+.. .+
T Consensus 90 ~~l~~~~~~~~g~~~---~l~~------~~~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~~g~---~~~l~~~~~--~~ 154 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ---RLEA------VKPMRILSGV-DTGEAVVFTGATEDRVALYALDGGG---LRELARLPG--FG 154 (582)
T ss_dssp EEEEEEETTSTTCCE---ECTT------SCSBEEEEEE-ECSSCEEEEEECSSCEEEEEEETTE---EEEEEEESS--CE
T ss_pred eEEEEEeccCCCccc---cccC------CCCceeeeeC-CCCCeEEEEecCCCCceEEEccCCc---EEEeecCCC--ce
Confidence 67776654 23222 1111 1123355777 4554 34444445555699987543 223332333 78
Q ss_pred eecCccCCCCCCCcEEEEEeCC----CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCC
Q psy17342 270 LSSHRAQGHIDFSHLYLTSSYD----WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLN 343 (401)
Q Consensus 270 i~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~ 343 (401)
++|+|+ ++++++++.+ +.|++||+.+++.. .+..|...+..++|+|||+ .|+++..++ .|++||+.
T Consensus 155 ~~~spD------G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 155 FVSDIR------GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPR 226 (582)
T ss_dssp EEEEEE------TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTT
T ss_pred EEECCC------CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCC
Confidence 999999 8999988777 78999999877754 6778888899999999998 677777888 89999998
Q ss_pred CCCCCcceEEeecCCCCeEEEE--------ecCCCcEEEEEecCCcEEEEEe
Q psy17342 344 LDTEVPATSAIVEGAPALSRVT--------WTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 344 ~~~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
+++.. . ...+...+..++ |+|||.++++++.||.+++|++
T Consensus 227 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 227 DGSVE-D---LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TCCEE-E---CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCcEE-E---ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 87644 2 234445555566 9999999999999999999999
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=5.9e-19 Score=155.39 Aligned_cols=254 Identities=8% Similarity=-0.007 Sum_probs=165.1
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-CCCCCceEEEecCCCeeEEEEeCCCCc-eEEEEe-----
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-FKKTTPEFEFFCQSPVLSCCFAKFNPY-LILGGT----- 138 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~g~----- 138 (401)
..+..++|+|+|++|++++ .+ .|.+|++. +++..........+.+.+++|+|++.. ++++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~----------~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAA----------MK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCCSEEEECTTSSEEEEEE----------BT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCCcEEEECCCCCEEEEEc----------cc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcce
Confidence 4578899999999898888 35 99999997 554432222211234667899998843 455553
Q ss_pred --------cCCeEEEEECCC-CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccc
Q psy17342 139 --------YSGQIVLWDTRV-QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETR 208 (401)
Q Consensus 139 --------~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~ 208 (401)
.+|.+.+|++.. ++....... . ...+...+.+++| +|++++++++.. ++.|.+|++...++.....
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQN-Y-EYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEE-E-ECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEee-E-EeCCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 589999999974 332111110 0 0135567899999 999998887654 6799999997212111111
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCce------eeec----CCCC------ceeeee
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNV------ECYE----GHEG------PVVGLS 271 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~------~~~~----~~~~------~v~~i~ 271 (401)
.+. ...+...+..++|+ |+++++++++. ++.|.+|+......+.. ..+. +|.. .+..++
T Consensus 185 ~~~---~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 185 SVD---APDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEE---CSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred eEe---cCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 111 01124568999999 89988877764 78999997753222221 1121 2222 578899
Q ss_pred -cCccCCCCCCCcEEEEEeCC-C-----eEEEEEee-CCCceE---EEeecCCceEEEEECC---CCCcEEEEEec-CCE
Q psy17342 272 -SHRAQGHIDFSHLYLTSSYD-W-----SVKLWNIK-ENKPVH---SFNEFRDYVMDVQWSP---INPALFATVEV-AGR 336 (401)
Q Consensus 272 -~~~~~~~~~~~~~l~s~~~d-~-----~i~iwd~~-~~~~~~---~~~~~~~~v~~v~~~~---~~~~~l~~~~~-d~~ 336 (401)
|+|+ +++|++++.+ . .|.+|++. +++... ....+...+..++|+| +|+ +|++++. ++.
T Consensus 261 ~~spd------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~ 333 (365)
T 1jof_A 261 ALTFS------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGW 333 (365)
T ss_dssp EECTT------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCE
T ss_pred EECCC------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCe
Confidence 9999 6777666543 3 89999996 555433 1333445567899999 787 5666655 589
Q ss_pred EEEEeCCCC
Q psy17342 337 VDLWNLNLD 345 (401)
Q Consensus 337 i~iwd~~~~ 345 (401)
|.+|++...
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999998765
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=1.7e-19 Score=160.33 Aligned_cols=279 Identities=10% Similarity=0.021 Sum_probs=177.3
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCc--EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEEC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDG--VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT 148 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~ 148 (401)
.+|+|||++|+.++. .++ .|.+||+.+++.... ...+...+..++|+|++ +.|+.++.++.|++||+
T Consensus 41 ~~~SpDg~~l~~~~~---------~~g~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~ 109 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGA---------FDGPWNYYLLDLNTQVATQL-TEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDL 109 (388)
T ss_dssp CCBCTTSCEEEEEEC---------TTSSCEEEEEETTTCEEEEC-CCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEET
T ss_pred ccCCCCCCEEEEEEc---------CCCCceEEEEeCCCCceEEe-eeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEEC
Confidence 789999999999982 255 588889886654321 12233344567899988 56777777889999999
Q ss_pred CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE----------------------eCCCcEEEeeccCCCCCcc
Q psy17342 149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI----------------------SNDGRLCSWSLEMLSSPQE 206 (401)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~~wd~~~~~~~~~ 206 (401)
.+++.... ...+...+....|..++++..++.. ..+..|.+||+... ...
T Consensus 110 ~~g~~~~~------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~- 181 (388)
T 3pe7_A 110 ATLEENVV------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-EST- 181 (388)
T ss_dssp TTCCEEEE------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-CEE-
T ss_pred CCCcceee------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-ceE-
Confidence 98765432 1334455555555447888887743 23467888998752 211
Q ss_pred ccccccccccCCccceEEEEeccC-CCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCCC--CceeeeecCccCC
Q psy17342 207 TRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCED------GNVYSACRHGNKAGNVECYEGHE--GPVVGLSSHRAQG 277 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~ 277 (401)
.+. .+...+..++|+ | +++.|+....+ ..|++++..+.. ...+..+. ..+....|+|+
T Consensus 182 --~l~-----~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spd-- 248 (388)
T 3pe7_A 182 --VIL-----QENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPD-- 248 (388)
T ss_dssp --EEE-----EESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTT--
T ss_pred --Eee-----cCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCC--
Confidence 111 144568899999 7 88888776653 368888876443 23333343 35778899998
Q ss_pred CCCCCcEEEEEeC-CC----eEEEEEeeCCCceE--EEeecCCc---eEEEEECCCCCcEEEEE--------ecCCEEEE
Q psy17342 278 HIDFSHLYLTSSY-DW----SVKLWNIKENKPVH--SFNEFRDY---VMDVQWSPINPALFATV--------EVAGRVDL 339 (401)
Q Consensus 278 ~~~~~~~l~s~~~-d~----~i~iwd~~~~~~~~--~~~~~~~~---v~~v~~~~~~~~~l~~~--------~~d~~i~i 339 (401)
++.|+..+. ++ .|++||+.+++... .+..+... ...++|+|+|+.++++. ..+..|++
T Consensus 249 ----g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 249 ----GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp ----SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred ----CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 666654433 22 39999998876432 22221000 11237999998554433 45679999
Q ss_pred EeCCCCCCCcceEEeecCCC-----------CeEEEEecCCCcEEEEEe-cCCcEEEEEecc
Q psy17342 340 WNLNLDTEVPATSAIVEGAP-----------ALSRVTWTPNGTQLCVGD-EKGAITMFDVGE 389 (401)
Q Consensus 340 wd~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~~ 389 (401)
||+.+++.. .+. .+.. .+..++|+|||+.|+..+ .+|...||.+.-
T Consensus 325 ~d~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 325 FNMKNGTQH-RVA---RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EETTTTEEE-EEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred EeccCCceE-Eec---cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 999876532 222 2233 467889999998887655 567777776643
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.8e-18 Score=164.11 Aligned_cols=342 Identities=8% Similarity=-0.033 Sum_probs=199.5
Q ss_pred chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccc-ccccceEEEEecCCCCCe
Q psy17342 2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKW-SKNRNVTYMDWSTQHPEL 80 (401)
Q Consensus 2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 80 (401)
.|..-+.+++++ ||.+++||...++....+ ..+.. ........++|||||++|
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~Spdg~~l 76 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFL------------------------ENSTFDEFGHSINDYSISPDGQFI 76 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEEEEE------------------------CTTTTTTCCSCCCEEEECTTSSEE
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceEEEE------------------------echhhhhhcccccceEECCCCCEE
Confidence 366667777876 899999998776621111 00000 111234568999999999
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342 81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~ 160 (401)
+.++.... ....+..+.+.+||+.+++... ...+...+...+|||+| +.|+.+ .++.|++|++.++....
T Consensus 77 ~~~~~~~~-~~r~~~~~~~~~~d~~~~~~~~--l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~----- 146 (740)
T 4a5s_A 77 LLEYNYVK-QWRHSYTASYDIYDLNKRQLIT--EERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYR----- 146 (740)
T ss_dssp EEEEEEEE-CSSSCEEEEEEEEETTTTEECC--SSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEE-----
T ss_pred EEEECCee-eEEEccceEEEEEECCCCcEEE--cccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEE-----
Confidence 98882100 0000112678899999876543 22356789999999998 455655 47899999998776432
Q ss_pred ccccCCCCcE-----------------EEEEEeecCCceEEEEEeCCC--------------------------------
Q psy17342 161 LSVMAHTHPV-----------------FCMSVIGTQNAHNLISISNDG-------------------------------- 191 (401)
Q Consensus 161 ~~~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg-------------------------------- 191 (401)
++..++...+ ..+.| +|+|+.|+.++.|.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence 1222333322 34788 99999999876433
Q ss_pred ----cEEEeeccC---CCCCccccccccc-cccCCccceEEEEeccCCCCeEEEEc----CCceEEEEeCCCCC----CC
Q psy17342 192 ----RLCSWSLEM---LSSPQETRDLQYN-NKQTKNLAVLSLAFPQNDVNNFVVGC----EDGNVYSACRHGNK----AG 255 (401)
Q Consensus 192 ----~i~~wd~~~---~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~~~~~~~~~----~~ 255 (401)
.|.+||+.. .... ....+... ...++...+..++|+ |+++.++... .+..|++||..+.+ ..
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNA-TSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCC-CEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CCeeEEEEEECCCCCCCCcc-eEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 355666654 2100 11111100 001256678999999 7888666543 23469999987544 11
Q ss_pred ceeee--cCCCCcee-----eeecCccCCCCCCCcEEE-EEeC-C--CeEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342 256 NVECY--EGHEGPVV-----GLSSHRAQGHIDFSHLYL-TSSY-D--WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN 324 (401)
Q Consensus 256 ~~~~~--~~~~~~v~-----~i~~~~~~~~~~~~~~l~-s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 324 (401)
.+..+ .+|...|. ...|+|+ ++.|+ ..+. + ..|++||+..++.. .+......+..+.. +++
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspD------G~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~ 374 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLD------GNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTS 374 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTT------SSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECS
T ss_pred EEEEeeeccCCceEccCcCCCceEcCC------CCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeC
Confidence 12222 44665554 7889998 66665 5553 3 46888888765544 44444555665542 446
Q ss_pred CcEEEEEec----CCEEEEE--eCCCCCCCcceEEe-ecCCCCeEEEEecCCCcEEEEEecC---CcEEEEEeccCc
Q psy17342 325 PALFATVEV----AGRVDLW--NLNLDTEVPATSAI-VEGAPALSRVTWTPNGTQLCVGDEK---GAITMFDVGEVG 391 (401)
Q Consensus 325 ~~~l~~~~~----d~~i~iw--d~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~iw~~~~~~ 391 (401)
+.+++++.. .+...|| ++..+.....+... .........+.|||+|++++..... ..+.+++..+++
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 556666654 2344444 44432211011000 0123467889999999987655433 357788877653
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=5e-18 Score=148.76 Aligned_cols=277 Identities=14% Similarity=0.100 Sum_probs=172.7
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----cCCCeeEEEEeCCCCceEEEEec--CCe
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----CQSPVLSCCFAKFNPYLILGGTY--SGQ 142 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~~--dg~ 142 (401)
.++|+|+|+++.++.........+..++.|.+||..+.+.+.++... +......++++|++ ++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCe
Confidence 89999999999988732111111223678999999877766655543 12457789999988 55555543 588
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
|.+||+.+.+..... ..+. ....+.+ .|++ ..+++.+.||.+.+|++...+.......... .......+
T Consensus 133 v~v~d~~~~~~~~~~------i~~~-~~~~v~~--~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~-~~~~~~~~ 202 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDV------TAAA-GCWSVIP--QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ-MFSVKDDP 202 (361)
T ss_dssp EEEEETTTTEEEEEE------GGGT-TEEEEEE--CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC-CSCTTTSC
T ss_pred EEEEECCCCcEEEEE------ecCC-CcceeEE--cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc-eEcCCCCc
Confidence 999999887542110 1111 1222444 4443 6788889999999999864222210000000 00011111
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC----------CceeeeecCccCCCCCCCcEEEEEe--
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE----------GPVVGLSSHRAQGHIDFSHLYLTSS-- 289 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~~~~~l~s~~-- 289 (401)
..+.++ +++..++..+.++.++++|+..........+.... .....++++|+. +..+++..
T Consensus 203 -~~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-----~~lyv~~~~~ 275 (361)
T 2oiz_A 203 -IFIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-----GRMYVFMHPD 275 (361)
T ss_dssp -BCSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-----TEEEEEEESS
T ss_pred -eEEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC-----CeEEEEEccC
Confidence 122334 45667777778899999998654322222221100 111236788873 34444433
Q ss_pred --------CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC--CCCcceEEeecCCC
Q psy17342 290 --------YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD--TEVPATSAIVEGAP 359 (401)
Q Consensus 290 --------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~ 359 (401)
..+.|.+||+.+++.+.++..+. +.+++|+|+|+ +|++++. +.|.+||..++ +.+..+ .....
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l~~~~~i---~~~G~ 348 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEPKLLRTI---EGAAE 348 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSSCEEEEEE---TTSCS
T ss_pred CCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcceeeEEe---ccCCC
Confidence 13589999999999999998866 89999999998 6666665 99999999987 433222 24456
Q ss_pred CeEEEEecCCCc
Q psy17342 360 ALSRVTWTPNGT 371 (401)
Q Consensus 360 ~v~~~~~s~~g~ 371 (401)
....++++|+|+
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 678899999985
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.1e-17 Score=160.96 Aligned_cols=287 Identities=8% Similarity=0.043 Sum_probs=178.2
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-----CeeEEEEeCCCCceEEEEecC-
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-----PVLSCCFAKFNPYLILGGTYS- 140 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~g~~d- 140 (401)
...+++|+|+|+++++ + |+.|++||+.+++....+ ..+.. ....++||||+ +.|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~-~-----------~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYK-Q-----------ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDG-QFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEE-E-----------TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTS-SEEEEEEEEE
T ss_pred cccccEECCCCcEEEE-c-----------CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCCC-CEEEEEECCe
Confidence 3668999999965554 4 689999999987754322 22221 23458999998 566666554
Q ss_pred --------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342 141 --------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212 (401)
Q Consensus 141 --------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 212 (401)
+.+.+||+.+++.. .+..|...+...+| +|+|+.|+.+. ++.|.+|++...........-..
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~-------~l~~~~~~~~~~~~--SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI-------TEERIPNNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC-------CSSCCCTTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred eeEEEccceEEEEEECCCCcEE-------EcccCCCcceeeEE--CCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence 66789999987643 23567778999999 99999999885 67999999875332111110000
Q ss_pred c-cccCCc---------cceEEEEeccCCCCeEEEEcCCc------------------------------------eEEE
Q psy17342 213 N-NKQTKN---------LAVLSLAFPQNDVNNFVVGCEDG------------------------------------NVYS 246 (401)
Q Consensus 213 ~-~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~------------------------------------~i~~ 246 (401)
. ...++. .....+.|+ ||++.|+.++.|. .|++
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 0 000111 122358899 8999988874221 4778
Q ss_pred EeCCC---CCCCceeeec------CCCCceeeeecCccCCCCCCCcEEEEEeC----CCeEEEEEeeCCC----c--eEE
Q psy17342 247 ACRHG---NKAGNVECYE------GHEGPVVGLSSHRAQGHIDFSHLYLTSSY----DWSVKLWNIKENK----P--VHS 307 (401)
Q Consensus 247 ~~~~~---~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~--~~~ 307 (401)
||+.+ ........+. +|...+..++|+|+ +++++.... +..|++||+.+++ + +..
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd------g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ------ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET------TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC------CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 88875 3210122332 37778999999999 676665432 3479999999887 1 222
Q ss_pred E--eecCCceE-----EEEECCCCCcEEEEEe-cC--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE-EE
Q psy17342 308 F--NEFRDYVM-----DVQWSPINPALFATVE-VA--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC-VG 376 (401)
Q Consensus 308 ~--~~~~~~v~-----~v~~~~~~~~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~ 376 (401)
+ ..|...+. ...|+|+|+.++...+ .+ ..|++||+..+..... ..+...+..+.. +|++.|+ ++
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l----T~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI----TKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES----CCSSSCEEEEEE-ECSSEEEEEE
T ss_pred eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec----ccCCEEEEEEEE-EeCCEEEEEE
Confidence 2 44555554 7899999985542444 34 4688888876543322 233444555432 4455554 44
Q ss_pred ec----CCcEEEEEecc
Q psy17342 377 DE----KGAITMFDVGE 389 (401)
Q Consensus 377 ~~----dg~v~iw~~~~ 389 (401)
.. .+...||.+..
T Consensus 382 ~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 382 NEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp SCGGGCTTCBEEEEEET
T ss_pred ecCCCCCceeEEEEEEC
Confidence 43 24456665543
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=3.4e-17 Score=141.85 Aligned_cols=255 Identities=11% Similarity=0.053 Sum_probs=178.8
Q ss_pred CCCeeEEEEeCCCCceEEEEecC------------------------CeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYS------------------------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM 173 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (401)
-+.+.+++++|++ +++++...+ +.|.+||..+++..... -..+-.....+
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----~~~~~~~p~gi 96 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----GKNLFYLPHGL 96 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----CTTTCSSEEEE
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----CCCccCCceEE
Confidence 3679999999987 677777666 47999998876643211 12444578899
Q ss_pred EEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc--ccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCC
Q psy17342 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY--NNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRH 250 (401)
Q Consensus 174 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~ 250 (401)
++ ++++.++++...++.|++|+..........+.... .....+...+..++++|.++.++++.+ .++.|++|+..
T Consensus 97 a~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~ 174 (329)
T 3fvz_A 97 SI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174 (329)
T ss_dssp EE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred EE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence 99 89999888888899999999763211111110000 000123446889999933788888876 68999999964
Q ss_pred CCCCCceeeecC----------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEE
Q psy17342 251 GNKAGNVECYEG----------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDV 318 (401)
Q Consensus 251 ~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v 318 (401)
+. .+..+.. +-.....++++|+. +.++++...+++|++||..+++.+..+.. +...+.++
T Consensus 175 g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-----g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 175 GK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-----DQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp SC---EEEEECEECCSSSCCTTEESCEEEEEEETTT-----TEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred CC---EEEEeccCCCCCCCCCcccCCCcEEEEECCC-----CEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 32 3444431 22347899999874 57888888899999999988888888743 45678899
Q ss_pred EECCCCCcEEEEEe-------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 319 QWSPINPALFATVE-------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 319 ~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
+++| + .++++.+ .+..|++||+.+++.+..+.....+...+..++++|+|.++++...++.|++|++...
T Consensus 247 ~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 247 SYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 9999 3 2333332 3458999999888755443211234566899999999988888889999999999764
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=5.2e-17 Score=142.32 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=171.7
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe----------cCCeEEEEECCCCCCCceeeccccccC
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT----------YSGQIVLWDTRVQKKTPVHRTPLSVMA 165 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~ 165 (401)
|+.|.+||..+++.+..+..+ .. . .++|+|++ ++++++. .++.|.+||..+.+........-....
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g-~~-p-~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA-FN-G-HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC-EE-E-EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEECCCCeEEEEecCC-CC-C-ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 679999999887765444332 22 3 89999988 5555554 367899999987654322211000011
Q ss_pred CCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccc-cccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342 166 HTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG 242 (401)
Q Consensus 166 ~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 242 (401)
+......+++ +|++++|+++.. ++.|.+||+.+.. .... +.. .....+.+.|.....+++.+.||
T Consensus 106 ~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~---~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg 173 (361)
T 2oiz_A 106 GLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGD---YVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDG 173 (361)
T ss_dssp BCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTE---EEEEEGGG-------TTEEEEEECTTSSSEEEEEETTS
T ss_pred cCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCc---EEEEEecC-------CCcceeEEcCCCCeeEEEECCCC
Confidence 2344567888 999999998864 6799999998632 1111 111 11222445644456788888999
Q ss_pred eEEEEeCCCCCCCce------eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce--EEEee----
Q psy17342 243 NVYSACRHGNKAGNV------ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV--HSFNE---- 310 (401)
Q Consensus 243 ~i~~~~~~~~~~~~~------~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~---- 310 (401)
.+.+++.... .+.. ..+..+..++ .+.+.|+ +..++..+.++.|.++|+...+.. ..+..
T Consensus 174 ~~~~v~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 174 GLLTINLGED-GKVASQSRSKQMFSVKDDPI-FIAPALD------KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp SEEEEEECTT-SSEEEEEECCCCSCTTTSCB-CSCCEEC------SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred cEEEEEECCC-CcEeeeccccceEcCCCCce-EEEeccc------CCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 9998887532 1122 1122222222 2333454 455666678899999998754422 22211
Q ss_pred --cC----CceEEEEECCCCCcEEEEEe----------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 311 --FR----DYVMDVQWSPINPALFATVE----------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 311 --~~----~~v~~v~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
+. .....++|+|+++.++++.. ..+.|.+||+.+.+.+..+. .+ . +..++|+|||++|+
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---~~-~-p~~ia~spdg~~l~ 320 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---GR-D-ALSMTIDQQRNLML 320 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---CT-T-CCEEEEETTTTEEE
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---cC-C-eeEEEECCCCCEEE
Confidence 00 11123789999875555544 13589999999887555443 22 3 89999999999999
Q ss_pred EEecCCcEEEEEeccCccceeeee
Q psy17342 375 VGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 375 ~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
+++. +.|.+||..+++++.++++
T Consensus 321 v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 321 TLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EECS-SCEEEEECSSSSCEEEEEE
T ss_pred EeCC-CeEEEEECCCCcceeeEEe
Confidence 8887 9999999999865666664
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4.7e-16 Score=132.00 Aligned_cols=247 Identities=10% Similarity=0.086 Sum_probs=169.5
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEe
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSW 196 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~w 196 (401)
-..+.+++++|++ +++++...++.|.+||.... ........-....+...+..+++. .+++..+++... ++.|.+|
T Consensus 29 ~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 29 FTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp BSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEE
T ss_pred cCCCceEEECCCC-CEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEE-cCCCeEEEEcCCCCCEEEEE
Confidence 3568899999977 67777778899999998733 211111100112345678888872 256666666543 7899999
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCc
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHR 274 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~ 274 (401)
+.. +.....+. ..+...+..++++ ++++++++...++.|++|+.... .+..+. .+...+.+++++|
T Consensus 106 d~~--g~~~~~~~------~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 106 NQY--GQFVRKFG------ATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp CTT--SCEEEEEC------TTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECS
T ss_pred CCC--CcEEEEec------CccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECC
Confidence 943 22211111 1133467899999 78888888788899999997532 344443 3445688999999
Q ss_pred cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec--CCceEEEEECCCCCcEEEEEecCC-EEEEEeCCCCCCCcce
Q psy17342 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAG-RVDLWNLNLDTEVPAT 351 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~ 351 (401)
+ ++++++...++.|++||. .++.+..+..+ ...+.+++++|+|. ++++...++ .|.+||.. ++.+..+
T Consensus 174 ~------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~~~~~~ 244 (286)
T 1q7f_A 174 K------QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISAL 244 (286)
T ss_dssp S------SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred C------CCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CCEEEEE
Confidence 8 688888778999999997 46666666543 25788999999996 777777775 99999964 4433333
Q ss_pred EEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 352 SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 352 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
... .....+..++++|+|+++++ +.++.|++|++...
T Consensus 245 ~~~-~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 245 ESK-VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EES-SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ccc-CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 221 12234779999999987776 57899999998654
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=4.2e-16 Score=132.27 Aligned_cols=242 Identities=7% Similarity=0.010 Sum_probs=168.3
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-----ecCCCeeEEEEe-CCCCceEEEEe
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-----FCQSPVLSCCFA-KFNPYLILGGT 138 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~l~~g~ 138 (401)
-..+.+++++|++..+++.. .++.|.+||.+ ++....+.. .+...+..+++. +++ .++++..
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~----------~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~ 96 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADT----------NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTER 96 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEG----------GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEEC
T ss_pred cCCCceEEECCCCCEEEEEC----------CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcC
Confidence 35689999999997555555 58899999987 443322211 122468899995 544 6666653
Q ss_pred c-CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 139 Y-SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 139 ~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
. ++.|.+|+.. ++..... ...+...+.++++ .+++..+++...++.|.+|+... ........ ..
T Consensus 97 ~~~~~i~~~d~~-g~~~~~~-----~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~-----~~ 161 (286)
T 1q7f_A 97 SPTHQIQIYNQY-GQFVRKF-----GATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG--NVLHKFGC-----SK 161 (286)
T ss_dssp GGGCEEEEECTT-SCEEEEE-----CTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS--CEEEEEEC-----TT
T ss_pred CCCCEEEEECCC-CcEEEEe-----cCccCCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC--CEEEEeCC-----CC
Confidence 3 7899999943 3322111 0234457889999 88998888888889999999642 21111111 12
Q ss_pred CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC--CCceeeeecCccCCCCCCCcEEEEEeCCC-eE
Q psy17342 218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH--EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SV 294 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i 294 (401)
+...+..++++ ++++++++...++.|++|+.... .+..+..+ ...+..++++|+ ++++++...++ .|
T Consensus 162 ~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~------G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 162 HLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSN------GEILIADNHNNFNL 231 (286)
T ss_dssp TCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTT------CCEEEEECSSSCEE
T ss_pred ccCCcEEEEEC-CCCCEEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCC------CCEEEEeCCCCEEE
Confidence 33468899999 78888888788999999997543 34445433 356789999998 78888887776 99
Q ss_pred EEEEeeCCCceEEEeecCC--ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 295 KLWNIKENKPVHSFNEFRD--YVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
.+||. +++.+..+..+.. .+.+++++|+|. ++++ +.|+.|++|++....
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCC
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccccc
Confidence 99995 5677777766433 477999999996 6666 569999999987543
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=7.5e-17 Score=139.70 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=175.8
Q ss_pred cceEEEEecCCCCCeEEEEeccCCC---------------CCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKE---------------APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN 130 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 130 (401)
..+.+++++|+|+.+++... .... .....++.|.+||..+++........+-..+..++++|++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRG-DHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECT-TCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeCC-CCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 56999999999976665551 1000 0000125799999987765432221233578999999987
Q ss_pred CceEEEEecCCeEEEEECCCCC-CCceeeccc---cccCCCCcEEEEEEeecC-CceEEEEEe-CCCcEEEeeccCCCCC
Q psy17342 131 PYLILGGTYSGQIVLWDTRVQK-KTPVHRTPL---SVMAHTHPVFCMSVIGTQ-NAHNLISIS-NDGRLCSWSLEMLSSP 204 (401)
Q Consensus 131 ~~~l~~g~~dg~v~iw~~~~~~-~~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~~~l~s~~-~dg~i~~wd~~~~~~~ 204 (401)
+++++...++.|++|+..... ......... .-..+-.....+++ ++ ++..+++.+ .++.|++|+.. +..
T Consensus 103 -~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I~~~~~~--g~~ 177 (329)
T 3fvz_A 103 -NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRIVQFSPS--GKF 177 (329)
T ss_dssp -CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEEEEECTT--SCE
T ss_pred -CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeEEEEcCC--CCE
Confidence 588888888999999986542 111110000 00234456889999 88 777777776 68999999954 222
Q ss_pred cccccccccc---ccCCccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeee--cCCCCceeeeecCccCC-
Q psy17342 205 QETRDLQYNN---KQTKNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECY--EGHEGPVVGLSSHRAQG- 277 (401)
Q Consensus 205 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~- 277 (401)
...+...... ...+-..+..++++ ++ +.++++...++.|++|+... .+.+..+ ..+...+..++++|...
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTDT--KEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETTT--CCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECCC--CcEEEEEeccccCCCcceeeecCCEEE
Confidence 2211110000 01123457899999 56 77888888899999999872 3345555 34566788888888200
Q ss_pred CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
..+ ++.+++...+..|++||..+++.+..+. .+...+.+++++|+| .++++...++.|++|++...
T Consensus 255 ~~~-g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 255 AVN-GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEE-CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred EeC-CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 000 2333333345689999999999888874 456678999999999 58899989999999998753
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=7e-17 Score=153.71 Aligned_cols=297 Identities=7% Similarity=-0.042 Sum_probs=181.1
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCee---------EEEEe--CCCCc
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL---------SCCFA--KFNPY 132 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~ 132 (401)
|...+..++|++++-.++... .+.++...||....+... .....+...+. ...|+ |++..
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPR--------PAEAGRATLVRRRADGAE-ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEE--------TTTTTEEEEEEECTTSCE-EESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred cCCccceeEEcCCeEEEEecC--------cccCCcEEEEEECCCCCc-ceeCCCCccccccccccCCccceeeeecCCCe
Confidence 567899999998754444442 014788999986433322 22223344555 56666 98866
Q ss_pred -eEEEEecCCeEEEEECC--C-CCCCceeeccccccC-----CCCcEEEEEEeecCCceEEEEEeCC----------CcE
Q psy17342 133 -LILGGTYSGQIVLWDTR--V-QKKTPVHRTPLSVMA-----HTHPVFCMSVIGTQNAHNLISISND----------GRL 193 (401)
Q Consensus 133 -~l~~g~~dg~v~iw~~~--~-~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i 193 (401)
++++...+..|.++++. . +... .+.. |...+.+++| +|+|+.|++++.+ ..|
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~-------~l~~~~~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPR-------PLTPVSAVGGGLRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCE-------ECSCCCCSTTCEEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCE-------eccCCccCCCCccccCcEE--CCCCCEEEEEEecccCCCCCCceeEE
Confidence 45444445667777765 2 3321 1122 6677889999 9999999998877 579
Q ss_pred EEeeccCCCCC--ccccccccccccCCccceEEEEeccCCCCeEEEEcCC--------ceEEEEeCCC-CCC-Cceeeec
Q psy17342 194 CSWSLEMLSSP--QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--------GNVYSACRHG-NKA-GNVECYE 261 (401)
Q Consensus 194 ~~wd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~-~~~-~~~~~~~ 261 (401)
.+||+...... .....+. ..+...+..++|+ ||++.|+.++.+ ..|++||+.. ... .......
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVRELS----DDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEETTSTTTTCGGGSEESS----CSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCccccCCceeEEE----ecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 99998751000 1111111 0234567788999 899999877744 4799999873 311 2233334
Q ss_pred CCCCceeeeecCccCCCCCCCcEEEEEeCCC--eEEEEEeeCCCceEEEeecCCc--------eEEEEECCCCCcEEEEE
Q psy17342 262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--SVKLWNIKENKPVHSFNEFRDY--------VMDVQWSPINPALFATV 331 (401)
Q Consensus 262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------v~~v~~~~~~~~~l~~~ 331 (401)
+|...+..+.|+|+ ++++++++.++ .|.+||+.+++.......+... +..++|+|++. +++++
T Consensus 239 ~~~~~~~~~~~spd------g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~ 311 (662)
T 3azo_A 239 GPEEAIAQAEWAPD------GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVH 311 (662)
T ss_dssp ETTBCEEEEEECTT------SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEE
T ss_pred CCCceEcceEECCC------CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEE
Confidence 45788999999999 67888888888 5666666555543322222221 46788999987 78888
Q ss_pred ecCCEEEEE--eCCCCCCCcceEEeecCCCCeEEE-EecCCCcEEEEEecCCc--EEEEEeccCcccee
Q psy17342 332 EVAGRVDLW--NLNLDTEVPATSAIVEGAPALSRV-TWTPNGTQLCVGDEKGA--ITMFDVGEVGIACL 395 (401)
Q Consensus 332 ~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~--v~iw~~~~~~~~~l 395 (401)
+. +.++|| |+.+++ ... ...+...+..+ +++.+.-++++++.+.. |+++|+.+++.+.+
T Consensus 312 ~~-~~~~l~~~d~~~~~-~~~---l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE-LVD---AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp BS-SSCEEEEEETTTTE-EEE---CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred Ec-CccEEEEEECCCCc-EEE---ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 88 999999 544433 222 22344556666 44433333444555544 55556656654444
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=4e-15 Score=136.91 Aligned_cols=301 Identities=17% Similarity=0.200 Sum_probs=193.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEe----CCCCceEEEEec
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFA----KFNPYLILGGTY 139 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~g~~ 139 (401)
..+..+.|+|+|+++++++ .++.|.+||+. +.+.+.++ ........++|+ |+++.++++...
T Consensus 197 ~~p~~v~~SpDGr~lyv~~----------~dg~V~viD~~~~t~~~v~~i--~~G~~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIG----------RDGKVNMIDLWMKEPTTVAEI--KIGSEARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp SCEEEEEECTTSCEEEEEE----------TTSEEEEEETTSSSCCEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCccceEECCCCCEEEEEc----------CCCeEEEEECCCCCCcEeEEE--ecCCCCceeEEccccCCCCCEEEEEEcc
Confidence 4577899999999999988 78999999995 55544333 333457899999 688666666667
Q ss_pred CCeEEEEECCCCCCCceeecc-cccc---CCCC-cEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTP-LSVM---AHTH-PVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYN 213 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~-~~~~---~~~~-~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 213 (401)
+++|.++|..+.+........ .... .|.. .+..+.. ++++ ..++....+|.|.++|....... ....+.
T Consensus 265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~--s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v~~i~-- 339 (567)
T 1qks_A 265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--SHYRPEFIVNVKETGKILLVDYTDLNNL-KTTEIS-- 339 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEE-EEEEEE--
T ss_pred CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE--cCCCCEEEEEecCCCeEEEEecCCCccc-eeeeee--
Confidence 799999998776644322210 0001 1222 5667766 5554 45556667799999998642211 111111
Q ss_pred cccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeeecC-----CCCceeeee-cCccCCCCCCCcEEE
Q psy17342 214 NKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECYEG-----HEGPVVGLS-SHRAQGHIDFSHLYL 286 (401)
Q Consensus 214 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~-----~~~~v~~i~-~~~~~~~~~~~~~l~ 286 (401)
.......+.|+ +++++++++. .++.|.++|....+ .+..... |.+ .... ++|.. +.+++
T Consensus 340 ----~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg--~g~~~~~p~~-----g~v~~ 405 (567)
T 1qks_A 340 ----AERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPG--RGANFVHPTF-----GPVWA 405 (567)
T ss_dssp ----CCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCT--TCEEEEETTT-----EEEEE
T ss_pred ----ccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCc--cceeeECCCC-----CcEEE
Confidence 22345678899 7888876654 67889999998543 3333322 322 1222 46653 45666
Q ss_pred EEe-CCCeEEEEEeeC-------CCceEEEeecCCceEEEEECCCCCcEEEEEec------CCEEEEEeCCCCCC---Cc
Q psy17342 287 TSS-YDWSVKLWNIKE-------NKPVHSFNEFRDYVMDVQWSPINPALFATVEV------AGRVDLWNLNLDTE---VP 349 (401)
Q Consensus 287 s~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~---~~ 349 (401)
++. .+++|.++|..+ .+.+.++......-..+..+|+++++.+.... .+.|.++|+.+.+. ..
T Consensus 406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~ 485 (567)
T 1qks_A 406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 485 (567)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence 664 468999999987 56777777644443457899999855443311 45999999987611 11
Q ss_pred ceEEe-e-------cCCCCeEEEEecCCCcEEEEEe-----cCCcEEEEEeccCccceeeeee
Q psy17342 350 ATSAI-V-------EGAPALSRVTWTPNGTQLCVGD-----EKGAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 350 ~~~~~-~-------~~~~~v~~~~~s~~g~~l~~~~-----~dg~v~iw~~~~~~~~~l~~~~ 399 (401)
.+... . .....+..+.|+|+|+.+..+. .++.|.|+|.++.+ .+++++
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~--~~~~i~ 546 (567)
T 1qks_A 486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE--LKHVIK 546 (567)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE--EEEEEC
T ss_pred CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce--EEEEeC
Confidence 11111 1 1245789999999999887663 36899999999874 444443
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=4.6e-18 Score=151.38 Aligned_cols=281 Identities=9% Similarity=-0.037 Sum_probs=171.5
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCC-eeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSP-VLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
.+.+++|+|+|++|+.+... ..+..|.+||+.+++... ...+... ...+.|+|++ +.|+..+.++.|.+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~--l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQ--LTEGKGDNTFGGFISTDE-RAFFYVKNELNLMK 106 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEE--CCCSSCBCTTTCEECTTS-SEEEEEETTTEEEE
T ss_pred eeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEE--eecCCCCccccceECCCC-CEEEEEEcCCcEEE
Confidence 36778999999999888721 123478888988654321 1222223 3347899988 56666667889999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEE-------------------EEEeecCCceEEEEE-----eCCCcEEEeeccCC
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFC-------------------MSVIGTQNAHNLISI-----SNDGRLCSWSLEML 201 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~-----~~dg~i~~wd~~~~ 201 (401)
|++.+++...... .+...... +.| +|+++.++.. ..+..|.+||+...
T Consensus 107 ~d~~~~~~~~~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 107 VDLETLEEQVIYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDW--QPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp EETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGC--CCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EECCCCCcEEEEe------cccccCCCCCEEEeccCCcccccccccccc--CCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 9998776432221 12221111 122 4555555443 35567888988652
Q ss_pred CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCC--CCceeeeecC
Q psy17342 202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECYEGH--EGPVVGLSSH 273 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~ 273 (401)
..... . .+...+..+.|+|.++..|+..+.+ ..|++++..+.. ...+..+ ...+..+.|+
T Consensus 179 -~~~~~---~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 179 -ELEVI---H-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWI 246 (396)
T ss_dssp -CEEEE---E-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEEC
T ss_pred -cEEee---c-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEEC
Confidence 11111 1 1445688999993277766665543 358888876433 2222223 2357889999
Q ss_pred ccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceEEEeecCCceEEEEECC-CCCcEEEEEe---------------
Q psy17342 274 RAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVHSFNEFRDYVMDVQWSP-INPALFATVE--------------- 332 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~~~~--------------- 332 (401)
|+ ++.|+..+.+ +.|++||+.+++..... .... .. +.|+| +|+ +++.++
T Consensus 247 pd------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 247 PD------GSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp TT------SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS-EE-EEEECSSSS-EEEEEECCC----------CC
T ss_pred CC------CCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC-CC-CCccCCCCc-eEEEecCCcceeecccccccc
Confidence 98 6766666543 45999999877654332 2222 33 89999 998 566543
Q ss_pred -cCCEEEEEeCCCCCCCcceEEeecCCC-----------CeEEEEecCCCcEEEEEec-CCcEEEEE--eccCc
Q psy17342 333 -VAGRVDLWNLNLDTEVPATSAIVEGAP-----------ALSRVTWTPNGTQLCVGDE-KGAITMFD--VGEVG 391 (401)
Q Consensus 333 -~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~-dg~v~iw~--~~~~~ 391 (401)
.+..|++||+.+++.. .+. .+.. .+..++|+|||+.|+..+. ++...+|. +.++.
T Consensus 317 ~~~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQ-KLC---KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCEEEEEETTTTBCC-EEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCCcEEEEecccCceE-Ecc---CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 3478999999876543 222 2222 2566889999998877664 55555554 44554
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=4.2e-16 Score=135.37 Aligned_cols=273 Identities=10% Similarity=0.090 Sum_probs=178.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
..|.+++|+|++..++..+ .++.++.|.- +... ....+...+.+++|+|++ ++++++..++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPII----------SESELQTITA---EPWL-EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCC----------CGGGSCEEEC---EEEE-EEESSCCCEEEEEECTTS-CEEEEETTTCEEEE
T ss_pred cccceeeecCCccceeEEe----------ecccCccccc---ceeE-EEeccCccccCcEECCCC-CEEEEECCCCEEEE
Confidence 4477888999887776665 5888888832 2221 122345677999999977 57778888899999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
||..+++.... ...+...+.++++ ++++.++++...+ +.|.+||..... ...... . ......
T Consensus 71 ~d~~~~~~~~~------~~~~~~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~--~---~~~~~~ 136 (333)
T 2dg1_A 71 INPETKEIKRP------FVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIE--D---LSTAYC 136 (333)
T ss_dssp ECTTTCCEEEE------EECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEEC--S---SSSCCC
T ss_pred EeCCCCcEEEE------eeCCCCCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEc--c---CccCCc
Confidence 99987654321 1235578999999 8899888877666 689999986522 111111 0 113456
Q ss_pred eEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeE
Q psy17342 222 VLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSV 294 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i 294 (401)
+..++++ +++.++++... .+.|+.++..... ...+..+...+..++|+|+ ++ ++++.+.++.|
T Consensus 137 ~~~i~~d-~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~d------g~~l~v~~~~~~~i 206 (333)
T 2dg1_A 137 IDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALSTD------EKVLWVTETTANRL 206 (333)
T ss_dssp EEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECTT------SSEEEEEEGGGTEE
T ss_pred ccceEEC-CCCCEEEEeccccccCCCceEEEEeCCCCE---EEEeecCCCcccceEECCC------CCEEEEEeCCCCeE
Confidence 8899999 67877666553 3667777765322 2223233345788999998 56 44555567899
Q ss_pred EEEEeeC-CCceEEEe-----ec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec---CCCCeEE
Q psy17342 295 KLWNIKE-NKPVHSFN-----EF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE---GAPALSR 363 (401)
Q Consensus 295 ~iwd~~~-~~~~~~~~-----~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~ 363 (401)
.+||+.+ ++.+..+. .. ...+..++++++|. ++++...++.|.+||.. ++....+..... +...+.+
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCE
T ss_pred EEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcce
Confidence 9999964 44332221 11 13678899999997 67777678899999984 443333321100 0115889
Q ss_pred EEecCCCcEEEEEecC
Q psy17342 364 VTWTPNGTQLCVGDEK 379 (401)
Q Consensus 364 ~~~s~~g~~l~~~~~d 379 (401)
++|+|+++.|++++.+
T Consensus 285 ~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 285 PQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCc
Confidence 9999998777766655
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=2.1e-16 Score=140.25 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=153.2
Q ss_pred EEEeCCCCceEEEEecCC--eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342 124 CCFAKFNPYLILGGTYSG--QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML 201 (401)
Q Consensus 124 ~~~~~~~~~~l~~g~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~ 201 (401)
.+|+|++..+++++..++ .|.+||+.+++.... ...+...+..+.| +|+++.|+.++.++.|.+||+...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------t~~~~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------TEGRGDNTFGGFL--SPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------CCSSCBCSSSCEE--CTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------eeCCCCCccceEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 789999855555544367 488888877654321 2344444445678 999999999999999999999863
Q ss_pred CCCccccccccccccCCccceEEE--EeccCCCCeEEEE----------------------cCCceEEEEeCCCCCCCce
Q psy17342 202 SSPQETRDLQYNNKQTKNLAVLSL--AFPQNDVNNFVVG----------------------CEDGNVYSACRHGNKAGNV 257 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~----------------------~~d~~i~~~~~~~~~~~~~ 257 (401)
. ....... +...+... .++ +++..++.. ..+..|++||+.... .
T Consensus 113 ~-~~~~~~~-------~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~ 180 (388)
T 3pe7_A 113 E-ENVVYQV-------PAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---S 180 (388)
T ss_dssp C-EEEEEEC-------CTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---E
T ss_pred c-ceeeeec-------hhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---e
Confidence 2 2222111 22223222 346 777777642 244779999987543 3
Q ss_pred eeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCC------CeEEEEEeeCCCceEEEeecC--CceEEEEECCCCCcEE
Q psy17342 258 ECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYD------WSVKLWNIKENKPVHSFNEFR--DYVMDVQWSPINPALF 328 (401)
Q Consensus 258 ~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l 328 (401)
..+..+...+..+.|+| + ++.|+....+ ..|.++|...++ ...+..+. ..+..++|+|+|+.++
T Consensus 181 ~~l~~~~~~~~~~~~sp~d------g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYD------DSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp EEEEEESSCEEEEEEETTE------EEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred EEeecCCccccccEECCCC------CCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEE
Confidence 44445667789999999 7 6777776653 367777765443 34444433 3578899999998554
Q ss_pred EEEecCC----EEEEEeCCCCCCCcceEEeecCC----CCeEEEEecCCCcEEEEE---------ecCCcEEEEEeccCc
Q psy17342 329 ATVEVAG----RVDLWNLNLDTEVPATSAIVEGA----PALSRVTWTPNGTQLCVG---------DEKGAITMFDVGEVG 391 (401)
Q Consensus 329 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~---------~~dg~v~iw~~~~~~ 391 (401)
+.+..++ .|++||+.+++....... ... .....++|+|||+.|+.. ..+..|++||+.+++
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 4444332 399999998764322221 110 001123799999988754 446689999999876
Q ss_pred ccee
Q psy17342 392 IACL 395 (401)
Q Consensus 392 ~~~l 395 (401)
.+.+
T Consensus 332 ~~~l 335 (388)
T 3pe7_A 332 QHRV 335 (388)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 5443
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=6e-16 Score=135.18 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=170.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--C--
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--G-- 141 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g-- 141 (401)
..+...++ +|+.++...... .......++.|.+||+.+++.. .+ ..+..++|+|++..++++.... +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~---~l---~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKA-NLKDNKYENTIVIENLKNNARR---FI---ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEE-ETTTTEEEEEEEEEETTTCCEE---EE---ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeec-CcccCCccceEEEEeCCCCceE---Ec---ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 45777888 888887764211 0001112678999999876532 12 5688999999985444443322 3
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------------------------CcEE
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------------------------GRLC 194 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~ 194 (401)
.|.+|++.+++.... ..+.. +..++| +|+++.|+.++.+ ..|.
T Consensus 86 ~l~~~~~~~g~~~~l-------~~~~~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 86 EIWVADLETLSSKKI-------LEAKN-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp EEEEEETTTTEEEEE-------EEESE-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred eEEEEECCCCceEEE-------EcCCC-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 377778876553221 12223 889999 9999988887642 4688
Q ss_pred EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC---------ceEEEEeCCCCCCCceeeecCCCC
Q psy17342 195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED---------GNVYSACRHGNKAGNVECYEGHEG 265 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~~~~~~~~ 265 (401)
+||+.... . ...+. . . .+..++|+ +++ +++++..+ ..|++++ .. ....+..+ .
T Consensus 156 ~~d~~~~~-~--~~~l~-----~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~-~ 217 (347)
T 2gop_A 156 IFDTESEE-V--IEEFE-----K-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE--DG---KEEKMFEK-V 217 (347)
T ss_dssp EEETTTTE-E--EEEEE-----E-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE--TT---EEEEEEEE-E
T ss_pred EEECCCCe-E--Eeeec-----C-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC--CC---ceEEeccC-c
Confidence 88886421 1 01111 1 2 67788999 788 77766543 2455555 22 23333334 4
Q ss_pred ceeeeecCccCCCCCCCcEEEEEeCC--------CeEEEEEeeCCCceEEEeecCCceEE-EEECCCCCcEEEEEecCCE
Q psy17342 266 PVVGLSSHRAQGHIDFSHLYLTSSYD--------WSVKLWNIKENKPVHSFNEFRDYVMD-VQWSPINPALFATVEVAGR 336 (401)
Q Consensus 266 ~v~~i~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~~~~~d~~ 336 (401)
.+..+ +|+ ++.|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.
T Consensus 218 ~~~~~--spd------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~ 284 (347)
T 2gop_A 218 SFYAV--DSD------GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGS 284 (347)
T ss_dssp SEEEE--EEC------SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTE
T ss_pred ceeeE--CCC------CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCc
Confidence 55544 777 6777776644 3688888 55543333445677886 9999 76 7888899999
Q ss_pred EEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE-EEEEeccCcccee
Q psy17342 337 VDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI-TMFDVGEVGIACL 395 (401)
Q Consensus 337 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v-~iw~~~~~~~~~l 395 (401)
++|| +.+++. .....+...|.+++|+| .++++++.++.. .+|.+. ++.+.+
T Consensus 285 ~~l~-~~~g~~----~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~l 336 (347)
T 2gop_A 285 VNLY-IWDGEI----KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQL 336 (347)
T ss_dssp EEEE-EESSSE----EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEEC
T ss_pred EEEE-EcCCce----EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEe
Confidence 9999 874332 22234567799999999 677777777665 788876 543333
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=2.9e-14 Score=121.56 Aligned_cols=280 Identities=8% Similarity=-0.010 Sum_probs=186.5
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
..+.+++++++|+.+++.. .++.|.+||.. ++ ...+... ....+.++++.+++ .+.++...++.|.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~----------~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQH----------KANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIG 81 (299)
T ss_dssp CCEEEEEECTTSCEEEEET----------TTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEec----------CCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEE
Confidence 5699999999997554433 47899999987 43 2222221 34678999999977 5666665578899
Q ss_pred EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224 (401)
Q Consensus 145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (401)
.|+... ... . .........+.++++ .+++..+++...++.|..||.. +... .... ......+..
T Consensus 82 ~~~~~g-~~~-~----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~~--g~~~-~~~~-----~~~~~~~~~ 145 (299)
T 2z2n_A 82 RITKKG-IIK-E----YTLPNPDSAPYGITE--GPNGDIWFTEMNGNRIGRITDD--GKIR-EYEL-----PNKGSYPSF 145 (299)
T ss_dssp EECTTS-CEE-E----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEECTT--CCEE-EEEC-----SSTTCCEEE
T ss_pred EECCCC-cEE-E----EeCCCcCCCceeeEE--CCCCCEEEEecCCceEEEECCC--CCEE-EecC-----CCCCCCCce
Confidence 999762 211 1 111234557889988 7888888877778899999873 1111 1111 113346789
Q ss_pred EEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee-eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 303 (401)
+++. +++..+++...++.|..++.. .. ... ....+...+.++++.++ +.++++...++.|.+||. +++
T Consensus 146 i~~~-~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~------g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 146 ITLG-SDNALWFTENQNNAIGRITES-GD--ITEFKIPTPASGPVGITKGND------DALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEC-TTSCEEEEETTTTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTT------SSEEEEETTTTEEEEECT-TCC
T ss_pred EEEc-CCCCEEEEeCCCCEEEEEcCC-Cc--EEEeeCCCCCCcceeEEECCC------CCEEEEccCCceEEEECC-CCc
Confidence 9999 778777777778899999983 22 111 12334456788999987 677777666889999998 665
Q ss_pred ceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342 304 PVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI 382 (401)
Q Consensus 304 ~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 382 (401)
.... ...+...+.+++++++|. ++++...++.|..||.. +. ...+.. ..+...+.++++ ++|.++++.. .+.|
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~-~~~~~~-~~~~~~~~~i~~-~~g~l~v~~~-~~~l 288 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN-NI-IEEYPI-QIKSAEPHGICF-DGETIWFAME-CDKI 288 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT-TE-EEEEEC-SSSSCCEEEEEE-CSSCEEEEET-TTEE
T ss_pred EEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC-Cc-eEEEeC-CCCCCccceEEe-cCCCEEEEec-CCcE
Confidence 3321 222346789999999996 66666567899999983 32 222211 123456889999 8888776655 5678
Q ss_pred EEEEeccCc
Q psy17342 383 TMFDVGEVG 391 (401)
Q Consensus 383 ~iw~~~~~~ 391 (401)
..++.++++
T Consensus 289 ~~~~~~~~~ 297 (299)
T 2z2n_A 289 GKLTLIKDN 297 (299)
T ss_dssp EEEEEC---
T ss_pred EEEEcCccc
Confidence 888887764
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=9.1e-16 Score=146.03 Aligned_cols=250 Identities=11% Similarity=0.061 Sum_probs=163.8
Q ss_pred ecCCCeeEEEEeCCCCceEEEE--ecCCeEEEEECCCCCCCceeeccccccCCCCcEE---------EEEEeecCCceE-
Q psy17342 116 FCQSPVLSCCFAKFNPYLILGG--TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF---------CMSVIGTQNAHN- 183 (401)
Q Consensus 116 ~~~~~v~~~~~~~~~~~~l~~g--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~- 183 (401)
.|...+..++|+++. .+++.. +.++...||....+... ..+..|...+. ...|..+|+++.
T Consensus 21 ~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 21 SRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAE------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCE------EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred hcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCc------ceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 457789999999753 455555 45788999986433211 11234444444 555632489988
Q ss_pred EEEEeC-CCcEEEeeccC-C-CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----------ceEEEEeCC
Q psy17342 184 LISISN-DGRLCSWSLEM-L-SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----------GNVYSACRH 250 (401)
Q Consensus 184 l~s~~~-dg~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~~~~~~ 250 (401)
|+.++. +..|.++++.. . +......... ...+...+..++|+ |+++.|++++.+ ..|++|++.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 776654 45566665540 0 2222211100 01145678899999 899999988876 579999987
Q ss_pred CCC----CCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCC--------CeEEEEEee-CC---CceEEEeecCC
Q psy17342 251 GNK----AGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYD--------WSVKLWNIK-EN---KPVHSFNEFRD 313 (401)
Q Consensus 251 ~~~----~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~ 313 (401)
+.. . ....+. .+...+..++|+|+ +++|+.++.+ ..|++||+. ++ +.......|..
T Consensus 170 ~~~~~~~~-~~~~l~~~~~~~~~~~~~SpD------G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 170 GSAAADRS-AVRELSDDAHRFVTGPRLSPD------GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp STTTTCGG-GSEESSCSCSSEECCCEECTT------SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred CCccccCC-ceeEEEecCCCcccCceECCC------CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 510 1 234444 56678889999999 7888877754 379999998 56 34333444578
Q ss_pred ceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCC--------CeEEEEecCCCcEEEEEecCCcEE
Q psy17342 314 YVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAP--------ALSRVTWTPNGTQLCVGDEKGAIT 383 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~~~~~dg~v~ 383 (401)
.+..++|+|+|+ ++++++.++ .|.+||+.+++...... .+.. .+..++|+|+++++++++. +.++
T Consensus 243 ~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 243 AIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV 317 (662)
T ss_dssp CEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred eEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence 899999999998 888888888 67777765554322211 1111 1457899999999999998 9999
Q ss_pred EEEec
Q psy17342 384 MFDVG 388 (401)
Q Consensus 384 iw~~~ 388 (401)
||.+.
T Consensus 318 l~~~d 322 (662)
T 3azo_A 318 LGILD 322 (662)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99554
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=3.6e-15 Score=142.83 Aligned_cols=256 Identities=9% Similarity=-0.010 Sum_probs=167.7
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe---
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ--- 142 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~--- 142 (401)
..+..++|||||++|+.+.... ++....|++||+.+++..... .. ...+..++|+||+. .|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~-~~-~~~~~~~~wspDg~-~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDV-LE-RVKFSCMAWTHDGK-GMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEE-EE-EECSCCEEECTTSS-EEEEEECCCCSSC
T ss_pred EEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCccc-cc-CcccceEEEEeCCC-EEEEEEECCcccc
Confidence 4688999999999999887310 111238999999987765432 22 22367899999884 5555555554
Q ss_pred -------------EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----CCcEEEeeccCCC--
Q psy17342 143 -------------IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----DGRLCSWSLEMLS-- 202 (401)
Q Consensus 143 -------------v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~~~-- 202 (401)
|++|++.++....... .....|...+..+.| +|++++|+..+. +..|.+||+....
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v--~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILC--AEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEE--ECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEE--eccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 9999998765321110 112235566788889 999999887765 5679999987410
Q ss_pred --CCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCC--ceeeeecCc
Q psy17342 203 --SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEG--PVVGLSSHR 274 (401)
Q Consensus 203 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~ 274 (401)
.......+.. +...+.. .|+ +++..|+..+.. +.|++|++..........+..|.. .+.++.|.+
T Consensus 273 ~~~~~~~~~l~~-----~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 273 ITGILKWVKLID-----NFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR 345 (710)
T ss_dssp SCSSCCCEEEEC-----SSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred cCCccceEEeeC-----CCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc
Confidence 0001111211 2333333 466 577776665543 369999987543212344444544 678888886
Q ss_pred cCCCCCCCcEEEEEeCCCe--EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCC
Q psy17342 275 AQGHIDFSHLYLTSSYDWS--VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDT 346 (401)
Q Consensus 275 ~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~ 346 (401)
. +.++++...|+. |.+||+.+++.+..+..+.+.+..+.++|+++.++++.+. .+.|++||+.+++
T Consensus 346 ~------~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 346 S------NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T------TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C------CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5 678888888885 5556665777778888777889999999998755555443 4789999998766
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=8.4e-15 Score=124.88 Aligned_cols=245 Identities=11% Similarity=0.050 Sum_probs=167.8
Q ss_pred ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342 116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS 195 (401)
Q Consensus 116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 195 (401)
.......+++|+|++..+++++..++.|..|+..++ .. .+..+...+.++++ ++++.++++...++.|.+
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-------~~~~~~~~~~~l~~--~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-------PEMHPSHHQNGHCL--NKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-------EEESSCSSEEEEEE--CTTCCEEEEETTTTEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-------EEECCCCCcceeeE--CCCCcEEEEecCCCeEEE
Confidence 345567899999988558888888999999999876 21 12345677899999 899998888777889999
Q ss_pred eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE----Ec-------------CCceEEEEeCCCCCCCcee
Q psy17342 196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV----GC-------------EDGNVYSACRHGNKAGNVE 258 (401)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~d~~i~~~~~~~~~~~~~~ 258 (401)
||..+.. ........ .......+..++++ ++++++++ |+ ..+.|+.++.. . ...
T Consensus 95 ~d~~~g~-~~~~~~~~---~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~ 165 (296)
T 3e5z_A 95 QREPGGE-WESIADSF---EGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---TLS 165 (296)
T ss_dssp ECSTTCC-EEEEECEE---TTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---CEE
T ss_pred EcCCCCc-EEEEeecc---CCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---CEE
Confidence 9985422 11111100 00112346778999 78887776 33 13467777654 1 234
Q ss_pred eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-CCCc---eEEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342 259 CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-ENKP---VHSFNEFRDYVMDVQWSPINPALFATVEVA 334 (401)
Q Consensus 259 ~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d 334 (401)
.+..+......++|+|+ ++.+++.+.++.|.+||+. +++. ...+..+...+.+++++++|. ++++. +
T Consensus 166 ~~~~~~~~~~gi~~s~d------g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~ 236 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPS------GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--G 236 (296)
T ss_dssp EEECCCSSEEEEEECTT------SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--T
T ss_pred EeecCCCCCccEEECCC------CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--C
Confidence 44556667789999998 6777777778999999997 4544 233333455677899999997 55555 7
Q ss_pred CEEEEEeCCCCCCCcceEEeecCCCCeEEEEe-cCCCcEEEEEecCCcEEEEEeccCccce
Q psy17342 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTW-TPNGTQLCVGDEKGAITMFDVGEVGIAC 394 (401)
Q Consensus 335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~dg~v~iw~~~~~~~~~ 394 (401)
+.|.+||.. ++....+. .+.. +++++| +|+++.|++++.++ +.-++.++.+++.
T Consensus 237 ~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 237 DGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp TEEEEECTT-SCEEEEEE---CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred CeEEEECCC-CCEEEEEE---CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence 899999986 44333332 2333 889999 58999999888764 6666666665443
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=3.7e-15 Score=142.78 Aligned_cols=284 Identities=9% Similarity=0.004 Sum_probs=179.1
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEEecCC----eE
Q psy17342 75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTYSG----QI 143 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~dg----~v 143 (401)
|+|++++...... +...+.+.+.+...++ .+..+. +...+..++|||++..++++.+.+| .|
T Consensus 81 ~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~--~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i 153 (710)
T 2xdw_A 81 KKGKRYFYFYNTG-----LQNQRVLYVQDSLEGE--ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI 153 (710)
T ss_dssp EETTEEEEEEECS-----SCSSCEEEEESSTTSC--CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred EECCEEEEEEEcC-----CceEEEEEEEcCCCCC--cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence 8999888776311 1112244555544332 222222 1225789999999854444444344 89
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc----------------EEEeeccCCCCCccc
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR----------------LCSWSLEMLSSPQET 207 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~----------------i~~wd~~~~~~~~~~ 207 (401)
++||+.+++..... . ....+..++| +|+++.|+.++.++. |.+|++.+... ...
T Consensus 154 ~v~d~~tg~~~~~~-----~--~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~ 223 (710)
T 2xdw_A 154 KFMKVDGAKELPDV-----L--ERVKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-EDI 223 (710)
T ss_dssp EEEETTTTEEEEEE-----E--EEECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-GCE
T ss_pred EEEECCCCCCCccc-----c--cCcccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-cce
Confidence 99999987653211 1 1112567889 999999999988766 99999875221 111
Q ss_pred cccccccccCCccceEEEEeccCCCCeEEEEcC-----CceEEEEeCCC------CCCCceeeecCCCCceeeeecCccC
Q psy17342 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-----DGNVYSACRHG------NKAGNVECYEGHEGPVVGLSSHRAQ 276 (401)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~------~~~~~~~~~~~~~~~v~~i~~~~~~ 276 (401)
.... ...+...+..+.|+ +++++|+.++. +..|++||+.. ... ....+..+...+.. .|+|+
T Consensus 224 ~v~~---~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~d- 296 (710)
T 2xdw_A 224 LCAE---FPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNE- 296 (710)
T ss_dssp EEEC---CTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEE-
T ss_pred EEec---cCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEecc-
Confidence 1111 11234457889999 89998887764 56899999874 211 24455556665554 47776
Q ss_pred CCCCCCcEEEEEeC-C---CeEEEEEeeCCCc--eEEEeecCC--ceEEEEECCCCCcEEEEEecCCE--EEEEeCCCCC
Q psy17342 277 GHIDFSHLYLTSSY-D---WSVKLWNIKENKP--VHSFNEFRD--YVMDVQWSPINPALFATVEVAGR--VDLWNLNLDT 346 (401)
Q Consensus 277 ~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~--~~~~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~--i~iwd~~~~~ 346 (401)
+..|+..+. + ..|.+||+.++.. ...+..|.. .+..++|++++. ++++...|+. |.+||+.+++
T Consensus 297 -----g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 297 -----GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp -----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCC
T ss_pred -----CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCC
Confidence 555555443 2 3699999987642 355555544 688899997664 8888888885 5566775555
Q ss_pred CCcceEEeecCCCCeEEEEecCCCcEEEEEe----cCCcEEEEEeccCc
Q psy17342 347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGD----EKGAITMFDVGEVG 391 (401)
Q Consensus 347 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~dg~v~iw~~~~~~ 391 (401)
....+. .+...+..++++|+++.|+... ..+.|++||+.+++
T Consensus 371 ~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 LLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecC---CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 333322 2356688899999987666432 34789999998876
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=1e-15 Score=146.17 Aligned_cols=288 Identities=8% Similarity=-0.030 Sum_probs=178.4
Q ss_pred cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEEec----CCe
Q psy17342 74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTY----SGQ 142 (401)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~----dg~ 142 (401)
+|+|++++...... +...+.|.+.+...+. .+..+. |...+..++|||++..++++.+. +..
T Consensus 76 ~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 76 SRRNGRFFYVRTHK-----DKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV 148 (695)
T ss_dssp EEETTEEEEEEECT-----TCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred EEECCEEEEEEEcC-----CCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence 38899888877411 0012334444443332 333332 22368899999998544444333 457
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc-------------EEEeeccCCCCC-cccc
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-------------LCSWSLEMLSSP-QETR 208 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------i~~wd~~~~~~~-~~~~ 208 (401)
|++||+.+++.... ..+... ....++| +|+++.|+.++.|.. |++|++.+.... ....
T Consensus 149 i~v~dl~tg~~~~~----~~~~~~--~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 149 LHVIDVDSGEWSKV----DVIEGG--KYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp EEEEETTTCCBCSS----CCBSCC--TTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred EEEEECCCCCCcCC----cccCcc--cccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 99999998774300 011111 1157889 999999999988776 999998753211 1111
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcCCc----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 284 (401)
. ...+...+..+.|+ +++++|++++.++ .|++++.... ....+..+...+....+ ++ +.+
T Consensus 221 ~-----~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~-~~------g~l 284 (695)
T 2bkl_A 221 E-----RTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEK---DFRLLVKGVGAKYEVHA-WK------DRF 284 (695)
T ss_dssp C-----CCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCS---SCEEEEECSSCCEEEEE-ET------TEE
T ss_pred e-----cCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCC---ceEEeecCCCceEEEEe-cC------CcE
Confidence 1 12244578899999 8999888877655 6777765322 23445555555566655 44 455
Q ss_pred EEEEe---CCCeEEEEEeeCCCc--eEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCC-CCCCCcceEEeec
Q psy17342 285 YLTSS---YDWSVKLWNIKENKP--VHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLN-LDTEVPATSAIVE 356 (401)
Q Consensus 285 l~s~~---~d~~i~iwd~~~~~~--~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~ 356 (401)
++... .++.|.+||+.+++. ...+..+ ...+..++|+ ++ .++++...|+..+||.+. .++....+ ...
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~ 360 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTV--QLP 360 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEEC--CCS
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEe--cCC
Confidence 45444 257899999977653 2344433 4467888888 44 488999999998888665 23322111 122
Q ss_pred CCCCeEEEEecCCCcEEEEE----ecCCcEEEEEeccCccceee
Q psy17342 357 GAPALSRVTWTPNGTQLCVG----DEKGAITMFDVGEVGIACLK 396 (401)
Q Consensus 357 ~~~~v~~~~~s~~g~~l~~~----~~dg~v~iw~~~~~~~~~l~ 396 (401)
+...+..++++|+++.|+.. ...+.|++||+.+++.+.++
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 34567788899999877633 33478999999988655544
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=1.2e-13 Score=119.89 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=151.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC----C
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS----G 141 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----g 141 (401)
..+.+++|+|+|+.++++. .++.|.+||.++++... +...+...+.+++++|++ +++++...+ +
T Consensus 45 ~~~~~~~~~~~g~l~~~~~----------~~~~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDV----------FEGNIFKINPETKEIKR-PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTG 112 (333)
T ss_dssp CCEEEEEECTTSCEEEEET----------TTCEEEEECTTTCCEEE-EEECSSSSEEEEEECTTS-CEEEEECTTSSSCC
T ss_pred ccccCcEECCCCCEEEEEC----------CCCEEEEEeCCCCcEEE-EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCc
Confidence 5578999999998555555 68899999998665332 222446789999999987 566666555 5
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC------CCcEEEeeccCCCCCccccccccccc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQYNNK 215 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~ 215 (401)
.|.+||..+........ ...+...+.++++ .+++..+++... .+.|..++... .... .+..
T Consensus 113 ~i~~~d~~~~~~~~~~~----~~~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~--~~~~--- 179 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIE----DLSTAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVT--PIIQ--- 179 (333)
T ss_dssp EEEEECTTSCSCEEEEC----SSSSCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEE--EEEE---
T ss_pred eEEEEeCCCCEEEEEEc----cCccCCcccceEE--CCCCCEEEEeccccccCCCceEEEEeCCC--CEEE--Eeec---
Confidence 89999988765431111 1134567899999 889987776654 24455555432 1111 1111
Q ss_pred cCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCcee--------eecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342 216 QTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGNVE--------CYEGHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 216 ~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
....+..++|+ ++++.+ ++.+.++.|++|+...... ... .+.++ ..+..+++.++ +++++
T Consensus 180 --~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~-~~~~~i~~d~~------G~l~v 248 (333)
T 2dg1_A 180 --NISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGH-EGPDSCCIDSD------DNLYV 248 (333)
T ss_dssp --EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSS-SEEEEEEEEEEECCSS-SEEEEEEEBTT------CCEEE
T ss_pred --CCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCc-CcccccceEEEecCCC-CCCCceEECCC------CCEEE
Confidence 22357889999 788755 4556688999999853211 111 11222 46778999988 68888
Q ss_pred EEeCCCeEEEEEeeCCCceEEEeecCC------ceEEEEECCCCCcEEEEEe
Q psy17342 287 TSSYDWSVKLWNIKENKPVHSFNEFRD------YVMDVQWSPINPALFATVE 332 (401)
Q Consensus 287 s~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~v~~~~~~~~~l~~~~ 332 (401)
+...++.|.+||. +++.+..+..+.. .+.+++|+|+++.++++..
T Consensus 249 ~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 249 AMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 8777899999998 5666777765433 5889999999864544444
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=1.6e-14 Score=124.84 Aligned_cols=274 Identities=8% Similarity=-0.039 Sum_probs=174.8
Q ss_pred CCcEEEEEeCcCCCCCceEEE-----ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCc
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEF-----FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHP 169 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 169 (401)
.++.|.++|.++++....+.. ........+.+. +.++.++...++.|.+||..+.+..... .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-------~~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-------TGFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-------ECCSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-------CCCCC
Confidence 489999999998765432211 012346778775 3366666667899999999987753221 22356
Q ss_pred EEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEe
Q psy17342 170 VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSAC 248 (401)
Q Consensus 170 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~ 248 (401)
...+++ ++++..+++...++.|.+||..+.. ....+.... ..+.......+++. ++..+++.. .++.|.++|
T Consensus 86 p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~--~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 86 PRYIHF--LSDEKAYVTQIWDYRIFIINPKTYE-ITGYIECPD--MDMESGSTEQMVQY--GKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEEEEE--EETTEEEEEEBSCSEEEEEETTTTE-EEEEEECTT--CCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEE
T ss_pred CcEEEE--eCCCeEEEEECCCCeEEEEECCCCe-EEEEEEcCC--ccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEE
Confidence 788888 7788555555488999999987532 111111110 00111234456663 334444443 488999999
Q ss_pred CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----------CeEEEEEeeCCCceEEEeec-CCceEE
Q psy17342 249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----------WSVKLWNIKENKPVHSFNEF-RDYVMD 317 (401)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~ 317 (401)
....+ .+..+... .....+.++|+ +++++++..+ +.|.++|..+++....+... ......
T Consensus 159 ~~t~~--~~~~i~~g-~~p~~i~~~~d------G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 159 TETDK--VVDELTIG-IQPTSLVMDKY------NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp TTTTE--EEEEEECS-SCBCCCEECTT------SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCCCe--EEEEEEcC-CCccceEEcCC------CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 87443 34444432 33468888887 6777776554 78999999888877776542 236889
Q ss_pred EEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-CcEEEEE----ecCCcEEEEEeccCcc
Q psy17342 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-GTQLCVG----DEKGAITMFDVGEVGI 392 (401)
Q Consensus 318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~----~~dg~v~iw~~~~~~~ 392 (401)
++++|+++. ++.+.. .|.+||..+++....... ..+......++++|+ +.++++. ..++.|.+||.. +
T Consensus 230 la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-- 302 (328)
T 3dsm_A 230 VQLNGTRDT-LYWINN--DIWRMPVEADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-- 302 (328)
T ss_dssp EEECTTSCE-EEEESS--SEEEEETTCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C--
T ss_pred EEEecCCCE-EEEEcc--EEEEEECCCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C--
Confidence 999999874 444433 899999987765321111 111356889999995 5555555 568899999998 5
Q ss_pred ceeeeeec
Q psy17342 393 ACLKFITS 400 (401)
Q Consensus 393 ~~l~~~~~ 400 (401)
+.++.+..
T Consensus 303 ~~~~~i~~ 310 (328)
T 3dsm_A 303 KLIDEFYV 310 (328)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 45555543
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=2.8e-14 Score=119.82 Aligned_cols=241 Identities=10% Similarity=-0.021 Sum_probs=163.8
Q ss_pred CeeEEEEeCCCCceEE-EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeec
Q psy17342 120 PVLSCCFAKFNPYLIL-GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSL 198 (401)
Q Consensus 120 ~v~~~~~~~~~~~~l~-~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~ 198 (401)
...++++.+++ ++++ +...++.|.+|+..+...... ...+...+.++++ .+++..+++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVL------PFNGLYQPQGLAV--DGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EEC------CCCSCCSCCCEEE--CTTCCEEEEET-TTEEEEECT
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceE------eeCCcCCcceeEE--CCCCCEEEEcC-CCEEEEEeC
Confidence 67899999987 5666 546788999998765432110 1223346678888 78888666655 889999997
Q ss_pred cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC
Q psy17342 199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH 278 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 278 (401)
... ...... ......+..++++ +++.++++...++.|.+|+..... ...........+.++++.|+
T Consensus 95 ~~~--~~~~~~------~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~--- 160 (270)
T 1rwi_B 95 GSN--NQTVLP------FDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNS--- 160 (270)
T ss_dssp TCS--CCEECC------CCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCCCEEECTT---
T ss_pred CCc--eEeeee------cCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCce--eEeeccccCCCceeEEEeCC---
Confidence 642 111111 1122467899999 688877777778899999754322 12112223345788999987
Q ss_pred CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCC
Q psy17342 279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA 358 (401)
Q Consensus 279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 358 (401)
++++++...++.|.+||............+...+.+++++++|. ++++...++.|.+||........ ....+.
T Consensus 161 ---g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~---~~~~~~ 233 (270)
T 1rwi_B 161 ---GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTV---LPFTGL 233 (270)
T ss_dssp ---CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEE---CCCCSC
T ss_pred ---CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCccee---eccCCC
Confidence 67777777788999999876544332223335688999999995 77777778899999987543211 112233
Q ss_pred CCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
..+.+++++++|+++++...++.|+++++...+
T Consensus 234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 568999999999988888899999999998764
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=4.8e-16 Score=138.33 Aligned_cols=233 Identities=7% Similarity=-0.038 Sum_probs=144.8
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeE-------------------EEEeCCC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLS-------------------CCFAKFN 130 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~ 130 (401)
.+.|+|+|+.|+.++ .++.|++||+.+++...... .+...... +.|+|++
T Consensus 85 ~~~~spdg~~l~~~~----------~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg 153 (396)
T 3c5m_A 85 GGFISTDERAFFYVK----------NELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT 153 (396)
T ss_dssp TCEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred cceECCCCCEEEEEE----------cCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCC
Confidence 378999999999998 67799999998765432222 12221112 3456666
Q ss_pred CceEEEE----ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCC------CcEEEeecc
Q psy17342 131 PYLILGG----TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISND------GRLCSWSLE 199 (401)
Q Consensus 131 ~~~l~~g----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~~wd~~ 199 (401)
..+++.. ..+..|.+||+.+++.... ..+...+..+.| +| ++..|+..+.+ ..|.+|++.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-------~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVI-------HQDTAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTTCCEEEE-------EEESSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred cceeeeeeccCCCcceEEEEECCCCcEEee-------ccCCcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 3332221 3566899999987654322 245667888999 88 78877776654 357777775
Q ss_pred CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342 200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274 (401)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 274 (401)
.. ....... . .....+..++|+ |+++.|+.++.+ +.|++||+.......+..+.+ .. +.|+|
T Consensus 225 ~~-~~~~l~~--~----~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~ 291 (396)
T 3c5m_A 225 GS-NVRKIKE--H----AEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSN 291 (396)
T ss_dssp SC-CCEESSC--C----CTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEEC
T ss_pred CC-ceeEeec--c----CCCccccceEEC-CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccC
Confidence 31 1111111 0 013357889999 788887776543 459999987543222222221 22 78888
Q ss_pred -cCCCCCCCcEEEEEe----------------CCCeEEEEEeeCCCceEEEeecCC-----------ceEEEEECCCCCc
Q psy17342 275 -AQGHIDFSHLYLTSS----------------YDWSVKLWNIKENKPVHSFNEFRD-----------YVMDVQWSPINPA 326 (401)
Q Consensus 275 -~~~~~~~~~~l~s~~----------------~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~ 326 (401)
+ +++++.++ .+..|++||+.+++. ..+..+.. .+..++|+|+|+.
T Consensus 292 ~d------g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 292 FD------GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp SS------SSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CC------CceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCe
Confidence 7 67777654 247899999987765 34555444 2567899999985
Q ss_pred EEEEEecCCEEEEEeC
Q psy17342 327 LFATVEVAGRVDLWNL 342 (401)
Q Consensus 327 ~l~~~~~d~~i~iwd~ 342 (401)
+++++..++...||.+
T Consensus 365 l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEEECTTSSCEEEEE
T ss_pred EEEEecCCCCceEEEE
Confidence 5555555565555544
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=4.5e-14 Score=118.58 Aligned_cols=242 Identities=11% Similarity=-0.031 Sum_probs=162.0
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
...+++++|+|+.++++.. .++.|.+|+..+.... .........+.++++.+++ +++++.. ++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~---------~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEG---------MYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECS---------SSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEE
T ss_pred CccceEECCCCCEEEEccC---------CCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEE
Confidence 5889999999974442431 5789999997643321 1111223567899999977 5665554 8899999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 226 (401)
|......... .......+.++++ .+++..+++...++.|.+|+..... ..... ......+..++
T Consensus 93 d~~~~~~~~~------~~~~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~---~~~~~-----~~~~~~p~~i~ 156 (270)
T 1rwi_B 93 AAGSNNQTVL------PFDGLNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKT---QTVLP-----FTGLNDPDGVA 156 (270)
T ss_dssp CTTCSCCEEC------CCCSCSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCS---CEECC-----CCSCCSCCCEE
T ss_pred eCCCceEeee------ecCCcCCCcceEE--CCCCCEEEEECCCCEEEEEECCCce---eEeec-----cccCCCceeEE
Confidence 9876543211 0122356889998 8888877777778899999754311 11111 11223567899
Q ss_pred eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH 306 (401)
Q Consensus 227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 306 (401)
++ ++++++++...++.|++|+..... .......+...+.++++.++ +.++++...++.|.+||........
T Consensus 157 ~~-~~g~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~~------g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 157 VD-NSGNVYVTDTDNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEA------GTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EC-TTCCEEEEEGGGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTT------CCEEEEETTTSCEEEECTTCSCCEE
T ss_pred Ee-CCCCEEEEECCCCEEEEEecCCCc--eEeecccCCCCceEEEECCC------CCEEEEECCCCcEEEEcCCCCccee
Confidence 99 678877777778899999987543 12222233356789999987 6777777778899999986544332
Q ss_pred EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
....+...+.+++++|+|. ++++...++.|+++++...+
T Consensus 228 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGG
T ss_pred eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcc
Confidence 2222335689999999996 88888899999999987654
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=1.6e-14 Score=138.97 Aligned_cols=289 Identities=10% Similarity=-0.010 Sum_probs=172.1
Q ss_pred cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEe-------cCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342 74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTYSG-- 141 (401)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~dg-- 141 (401)
+|+|++++...... ....-.+|..... ....+..+. +...+..++||||+..++++.+.+|
T Consensus 115 ~pdG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 115 QRRGASVFYSWNSG-------LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp EEETTEEEEEEECS-------SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred EEECCEEEEEEEcC-------CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 48999988877411 1112444544321 112222222 1226789999999854544444434
Q ss_pred --eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc--------------EEEeeccCCCCCc
Q psy17342 142 --QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR--------------LCSWSLEMLSSPQ 205 (401)
Q Consensus 142 --~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--------------i~~wd~~~~~~~~ 205 (401)
.|++||+.+++.... ..+...+..++| +|+ +.|+.++.++. |.+|++.+....
T Consensus 188 ~~~i~v~dl~tg~~~~~-------~~~~~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~- 256 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLAD-------ELKWVKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA- 256 (741)
T ss_dssp EEEEEEEETTTCCEEEE-------EEEEEESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-
T ss_pred eEEEEEEECCCCCCCCc-------cCCCceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-
Confidence 599999998875321 111112246788 899 88888877654 888887642211
Q ss_pred cccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 280 (401)
...... ...+...+..+.|+ +++++|+..+.++ .|++||+.+........+..+...+.... .|+
T Consensus 257 ~~lv~~---~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d----- 326 (741)
T 1yr2_A 257 DQPVFA---TPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV----- 326 (741)
T ss_dssp CEEEEC---CTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE-----
T ss_pred CEEEec---cCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc-----
Confidence 111111 11133357899999 8999888776543 79999987542121334444554444443 366
Q ss_pred CCcEEEEEeC----CCeEEEEEeeCC--CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC-CCCCCcceEE
Q psy17342 281 FSHLYLTSSY----DWSVKLWNIKEN--KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN-LDTEVPATSA 353 (401)
Q Consensus 281 ~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~ 353 (401)
++.|+..+. ++.|.+||+.++ +....+..+...+..++|+ ++ .++++...|+..+||.+. .+.....+
T Consensus 327 -g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l-- 401 (741)
T 1yr2_A 327 -GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPAGAV-- 401 (741)
T ss_dssp -TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEEEEC--
T ss_pred -CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCceeec--
Confidence 566666654 346999998774 2333344445556678887 33 488888899988877654 23322221
Q ss_pred eecCCCCeEEEEecCCCcEEEEE----ecCCcEEEEEeccCcccee
Q psy17342 354 IVEGAPALSRVTWTPNGTQLCVG----DEKGAITMFDVGEVGIACL 395 (401)
Q Consensus 354 ~~~~~~~v~~~~~s~~g~~l~~~----~~dg~v~iw~~~~~~~~~l 395 (401)
..++...+..++++|+++.|+.. ...+.|++||+.+++.+.+
T Consensus 402 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 402 SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 12345678889999998866633 3357899999988764444
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=4.1e-14 Score=120.62 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=158.6
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
....+++|+|+++.|+.++. .++.|..|+..++ ...+ ..+...+.+++++|++ +++++...++.|.+
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~---------~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDV---------RQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQG-HLIACSHGLRRLER 94 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTC-CEEEEETTTTEEEE
T ss_pred ccccCCeEeCCCCEEEEEeC---------CCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCC-cEEEEecCCCeEEE
Confidence 44788999999984444442 6889999999865 3222 3346678999999987 57766666689999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----------------CCcEEEeeccCCCCCcccc
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----------------DGRLCSWSLEMLSSPQETR 208 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~~wd~~~~~~~~~~~ 208 (401)
||..+++....... . .......+..+++ .++|.++++.+. .+.|..++.. +...
T Consensus 95 ~d~~~g~~~~~~~~-~-~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~--- 165 (296)
T 3e5z_A 95 QREPGGEWESIADS-F-EGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLS--- 165 (296)
T ss_dssp ECSTTCCEEEEECE-E-TTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEE---
T ss_pred EcCCCCcEEEEeec-c-CCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEE---
Confidence 99977654322110 0 0111234567888 889988887321 2344444432 1111
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc---eeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLY 285 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l 285 (401)
.+ ..+......++|+ ++++.+++.+.++.|++|++... ... ...+..+...+.++++.++ ++++
T Consensus 166 ~~-----~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~~i~~d~~------G~l~ 232 (296)
T 3e5z_A 166 AP-----IRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNAR-GETEYQGVHFTVEPGKTDGLRVDAG------GLIW 232 (296)
T ss_dssp EE-----ECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSS-SCEEEEEEEECCSSSCCCSEEEBTT------SCEE
T ss_pred Ee-----ecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCC-CcCcCCCeEeeCCCCCCCeEEECCC------CCEE
Confidence 11 1133456889999 78888877888899999998621 112 2233335566778999988 6766
Q ss_pred EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEE-CCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW-SPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 286 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
++. ++.|.+||.. ++.+..+..+.. +.+++| .|+++ .|++++.+ .+.-++.++.+
T Consensus 233 v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 233 ASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGR-TLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSC-EEEEEETT-EEEEEECSCCB
T ss_pred EEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCC-EEEEEcCC-eEEEEEccccc
Confidence 665 8899999986 777888887766 899999 68887 45555554 45555665543
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=3.2e-13 Score=124.36 Aligned_cols=275 Identities=11% Similarity=0.041 Sum_probs=176.3
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC--CCCCCceeeccccccCCCCcEEE
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR--VQKKTPVHRTPLSVMAHTHPVFC 172 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~v~~ 172 (401)
.++.|.++|..+++.+.++.. ...+..+.|+|++ +++++++.++.|.+||+. +.+.. .. +.. ......
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v--~~----i~~-G~~P~~ 244 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTV--AE----IKI-GSEARS 244 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEE--EE----EEC-CSEEEE
T ss_pred CCCeEEEEECCCCeEEEEEeC--CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEe--EE----Eec-CCCCce
Confidence 789999999998876655543 4567899999988 567777789999999996 44322 11 122 234568
Q ss_pred EEEeec----CCceEEEEEeC-CCcEEEeeccCCCCCcccccccccccc---CC-ccceEEEEeccCCCCeEEEEcCCce
Q psy17342 173 MSVIGT----QNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQ---TK-NLAVLSLAFPQNDVNNFVVGCEDGN 243 (401)
Q Consensus 173 ~~~~~~----~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~l~~~~~d~~ 243 (401)
++| + |+|+++++++. ++++.++|..+.. +...+........ .| ...+..+..++.....++.....|.
T Consensus 245 ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEE--ccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 888 7 68988777665 5899999987632 2222222110000 01 2257778888444455666677899
Q ss_pred EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCceEEEee-----cCCceEE
Q psy17342 244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKPVHSFNE-----FRDYVMD 317 (401)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~ 317 (401)
|.++|........+..+. .......+.|+|+ +++|+++. .+++|.++|+.+++.+..+.. |.+.-..
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pd------gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGS------HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTT------SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCC------CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 999998754321222222 3345667889998 67665554 578999999999987776654 3321212
Q ss_pred EEECCCCCcEEEEEe-cCCEEEEEeCCCCCC----CcceEEeecCCCCeEEEEecCCCcEEEEEec-------CCcEEEE
Q psy17342 318 VQWSPINPALFATVE-VAGRVDLWNLNLDTE----VPATSAIVEGAPALSRVTWTPNGTQLCVGDE-------KGAITMF 385 (401)
Q Consensus 318 v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~iw 385 (401)
+ ++|++..+++++. .++.|.++|..+.+. .............-..+..+|++++|.+... ..+|.++
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 2 5887544666654 468999999987321 1122211111222234778999999988763 3589999
Q ss_pred EeccC
Q psy17342 386 DVGEV 390 (401)
Q Consensus 386 ~~~~~ 390 (401)
|+.+.
T Consensus 474 d~~~~ 478 (567)
T 1qks_A 474 DIKAM 478 (567)
T ss_dssp EGGGC
T ss_pred ECCcc
Confidence 99876
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=1.9e-12 Score=110.36 Aligned_cols=278 Identities=9% Similarity=0.027 Sum_probs=183.7
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
..+.++++.++|+..++.. .++.|.+||.. ++.. .+... ....+.++++.+++ .+.++...++.|.
T Consensus 20 ~~p~~i~~d~~g~l~v~~~----------~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQH----------KANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIG 86 (300)
T ss_dssp CCEEEEEECTTSCEEEEET----------TTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred CCcceeeECCCCCEEEEcC----------CCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCC-CEEEEecCCCeEE
Confidence 5689999999997555443 57899999987 4332 22222 23678999999877 5666655578899
Q ss_pred EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224 (401)
Q Consensus 145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (401)
.+|.. ++.. . .........+.++++ .+++..+++...++.|..++.. +... ...+. .....+..
T Consensus 87 ~~d~~-g~~~-~----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~-----~~~~~~~~ 150 (300)
T 2qc5_A 87 KLSKK-GGFT-E----YPLPQPDSGPYGITE--GLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLP-----NKGSYPAF 150 (300)
T ss_dssp EECTT-SCEE-E----EECSSTTCCEEEEEE--CSTTCEEEEETTTTEEEEECTT--SCEE-EEECS-----STTCCEEE
T ss_pred EECCC-CCeE-E----ecCCCCCCCCccceE--CCCCCEEEEccCCCeEEEECCC--CCEE-EccCC-----CCCCCcee
Confidence 99987 4321 1 111223467889988 7888888877778889999875 2111 11111 13346789
Q ss_pred EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 304 (401)
+++. ++++++++...++.|..++.... . .......+...+.++++.++ +.++++....+.|.+||. +++.
T Consensus 151 i~~d-~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~~~~~~~~~~~i~~d~~------g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 151 ITLG-SDNALWFTENQNNSIGRITNTGK-L-EEYPLPTNAAAPVGITSGND------GALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEC-TTSSEEEEETTTTEEEEECTTCC-E-EEEECSSTTCCEEEEEECTT------SSEEEEETTTTEEEEECT-TCCE
T ss_pred EEEC-CCCCEEEEecCCCeEEEECCCCc-E-EEeeCCCCCCCcceEEECCC------CCEEEEccCCCEEEEEcC-CCcE
Confidence 9999 77886666666889999987422 1 11122234456788999987 677777666778999998 4543
Q ss_pred eEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342 305 VHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT 383 (401)
Q Consensus 305 ~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~ 383 (401)
... +..+...+.+++++++|. ++++...++.|..||.. +.. ..+.. ......+.+++++++|+++++.. . .|.
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~~-~~~~~-~~~~~~~~~i~~~~~g~l~v~~~-~-~i~ 294 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND-NTI-QEYQL-QTENAEPHGITFGKDGSVWFALK-C-KIG 294 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCE-EEEEC-CSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred EEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC-CcE-EEEEC-CccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence 332 223345688999999997 66766667899999983 322 22221 12345678899999998666555 4 677
Q ss_pred EEEec
Q psy17342 384 MFDVG 388 (401)
Q Consensus 384 iw~~~ 388 (401)
.++.+
T Consensus 295 ~~~p~ 299 (300)
T 2qc5_A 295 KLNLN 299 (300)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 77754
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=9.4e-14 Score=121.21 Aligned_cols=229 Identities=11% Similarity=0.090 Sum_probs=146.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec------
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY------ 139 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------ 139 (401)
..+..++|+|||+.|+.++... ......|.+|++.+++... ...... +..++|+|++..+++++..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~-----~~~~~~l~~~~~~~g~~~~--l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANE-----EKKVSEIWVADLETLSSKK--ILEAKN-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEET-----TTTEEEEEEEETTTTEEEE--EEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred ccCCCeEECCCCCEEEEEEecc-----CCCcceEEEEECCCCceEE--EEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence 3478899999999999887310 0012347788887654332 222234 9999999988544444322
Q ss_pred --------------------CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-------c
Q psy17342 140 --------------------SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-------R 192 (401)
Q Consensus 140 --------------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~ 192 (401)
...|.+||+.+++.... + .. . .+..+.| +|++ .++++..++ .
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~----l--~~-~-~~~~~~~--spdg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE----F--EK-P-RFSSGIW--HRDK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEE----E--EE-E-TTCEEEE--ETTE-EEEEEECCCSSCCSSCC
T ss_pred cEEEcccceeecCcccccCccceEEEEECCCCeEEee----e--cC-C-CcccccC--CCCe-EEEEEeccccccccccc
Confidence 25788999987653111 1 11 2 6778888 8999 777776542 4
Q ss_pred EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC--------ceEEEEeCCCCCCCceeeecCCC
Q psy17342 193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--------GNVYSACRHGNKAGNVECYEGHE 264 (401)
Q Consensus 193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~ 264 (401)
..+|.+. .+.. ..+.. + ..+..+ + |+++.|+.++.+ ..|++|| . . ........+.
T Consensus 200 ~~l~~~d-~~~~---~~l~~-----~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~--~~~~l~~~~~ 262 (347)
T 2gop_A 200 WDIYIWE-DGKE---EKMFE-----K-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD-G-K--EVMGILDEVD 262 (347)
T ss_dssp EEEEEEE-TTEE---EEEEE-----E-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC-S-S--CEEESSTTCC
T ss_pred ccEEEeC-CCce---EEecc-----C-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC-C-C--ceEeccccCC
Confidence 5666554 1211 11211 2 334444 6 788888877644 4688888 2 2 2333445567
Q ss_pred Cceee-eecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEE-EEEeC
Q psy17342 265 GPVVG-LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV-DLWNL 342 (401)
Q Consensus 265 ~~v~~-i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i-~iwd~ 342 (401)
..+.. +.|+ + + ++++++.++.++|| +.+++. ..+..+...|.+++|+| . ++++++.++.. .||.+
T Consensus 263 ~~~~~~~~~s-d------g-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 263 RGVGQAKIKD-G------K-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTW 329 (347)
T ss_dssp SEEEEEEEET-T------E-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred cccCCccEEc-C------c-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEe
Confidence 77886 8898 6 7 88899999999999 886654 44444577899999999 4 66666666654 67766
Q ss_pred C
Q psy17342 343 N 343 (401)
Q Consensus 343 ~ 343 (401)
.
T Consensus 330 ~ 330 (347)
T 2gop_A 330 D 330 (347)
T ss_dssp S
T ss_pred C
Confidence 5
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=8.3e-14 Score=133.04 Aligned_cols=253 Identities=8% Similarity=-0.065 Sum_probs=162.6
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
|...+..++|||||++||.+... .++.+..|++||+.+++.+ .. ... ......++|+|++ +.|+.++.+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~-----~G~~~~~i~v~dl~tg~~~~~~-~~~-~~~~~~~~wspDg-~~l~~~~~d~~ 190 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKP-----NAADEAVLHVIDVDSGEWSKVD-VIE-GGKYATPKWTPDS-KGFYYEWLPTD 190 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEE-----TTCSCCEEEEEETTTCCBCSSC-CBS-CCTTCCCEECTTS-SEEEEEECCCC
T ss_pred CCEEEEEEEECCCCCEEEEEECC-----CCCceEEEEEEECCCCCCcCCc-ccC-cccccceEEecCC-CEEEEEEecCC
Confidence 34578999999999999877631 2234579999999987765 22 111 1122689999988 45555556554
Q ss_pred -------------EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC----cEEEeeccCCCCCc
Q psy17342 143 -------------IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG----RLCSWSLEMLSSPQ 205 (401)
Q Consensus 143 -------------v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~ 205 (401)
|++|++.++...... ......|...+..+.| +++|++|+.++.++ .|.+|+... .
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~-~--- 262 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGE-K--- 262 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTC-S---
T ss_pred CCCccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCC-C---
Confidence 999999877532111 0122345567889999 99999998877665 555554432 1
Q ss_pred cccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceeeecCC--CCceeeeecCccCCCCC
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVECYEGH--EGPVVGLSSHRAQGHID 280 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~ 280 (401)
....+.. +...+....++ ++.+++.+. .++.|++|++..........+..+ ...+..+++. .
T Consensus 263 ~~~~l~~-----~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~----- 329 (695)
T 2bkl_A 263 DFRLLVK-----GVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G----- 329 (695)
T ss_dssp SCEEEEE-----CSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-----
T ss_pred ceEEeec-----CCCceEEEEec--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-----
Confidence 1111211 33344555554 444444443 257899999864321112333333 4567778887 3
Q ss_pred CCcEEEEEeCCCeEEEEEee-CCCceEEEeec-CCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCC
Q psy17342 281 FSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEF-RDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDT 346 (401)
Q Consensus 281 ~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~ 346 (401)
+.++++...|+..+||.+. +++....+..+ .+.+..++++|+++.++++.+. .+.|++||+.+++
T Consensus 330 -~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 330 -GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp -TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5888999999999998776 45556666554 5678889999998755555443 4689999998765
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=2.4e-13 Score=114.08 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=153.6
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCC-CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT-HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL 210 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 210 (401)
++|++++.++.|.+||.++++.... +..+. ..+.++.+ .|+++.++ +.++.|..||. + ++....+..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~------~~~~~~~~~~~~~~--~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~ 73 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWE------YPLEKGWECNSVAA--TKAGEILF--SYSKGAKMITR-D-GRELWNIAA 73 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEE------EECCTTCCCCEEEE--CTTSCEEE--ECBSEEEEECT-T-SCEEEEEEC
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEE------eCCCccCCCcCeEE--CCCCCEEE--eCCCCEEEECC-C-CCEEEEEcC
Confidence 6899999999999999988875432 23333 46778888 89998888 45778999987 3 222222221
Q ss_pred ccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeec------CCCCceeeeecCccCCCCCCCc
Q psy17342 211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYE------GHEGPVVGLSSHRAQGHIDFSH 283 (401)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~ 283 (401)
+....+.++.+. ++++.+++.+. ++.+..++..+. .+..+. .+......+...++ ++
T Consensus 74 ------~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~Gk---~l~~~~~~~~~~~~~~~~~~v~~~~~------G~ 137 (276)
T 3no2_A 74 ------PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNMKGE---VLSKTEFETGIERPHAQFRQINKNKK------GN 137 (276)
T ss_dssp ------CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECTTSC---EEEEEEECCSCSSGGGSCSCCEECTT------SC
T ss_pred ------CCCccccccEEC-CCCCEEEEecCCCCEEEEEeCCCC---EEEEEeccCCCCcccccccCceECCC------CC
Confidence 122467788888 89999998887 888888876432 333332 12233455666676 78
Q ss_pred EEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-c--CCCC
Q psy17342 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-E--GAPA 360 (401)
Q Consensus 284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~ 360 (401)
++++...++.|..||.. ++.+.++... ..+.++...+++. ++++++.++.|..+|..+++.+..+.... . .-..
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence 99999999999999987 9999988864 4566788899987 77777778899999999888766654211 1 1123
Q ss_pred eEEEEecCCCcEEEEEe
Q psy17342 361 LSRVTWTPNGTQLCVGD 377 (401)
Q Consensus 361 v~~~~~s~~g~~l~~~~ 377 (401)
+..++..++|..+++..
T Consensus 215 ~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred cccceEcCCCCEEEEec
Confidence 67888899999888763
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=2.9e-12 Score=112.28 Aligned_cols=267 Identities=8% Similarity=-0.007 Sum_probs=160.9
Q ss_pred EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCCeEEEEECCCCCCCceeecc-ccccCCC
Q psy17342 98 VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSGQIVLWDTRVQKKTPVHRTP-LSVMAHT 167 (401)
Q Consensus 98 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~ 167 (401)
.|.++|..+++.+.++..+ ... .++++|+++.+.++.. .++.|.+||..+.+........ ..-..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 8999999987765443322 223 9999999854444431 3678999999876543221110 0000011
Q ss_pred CcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccc-cccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342 168 HPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQET-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV 244 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 244 (401)
..-..+.+ +|++++|+.+.. ++.|.++| .+. +.... ..+. .++.+.|.....+++.+.||.+
T Consensus 125 ~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~~-----------~~~~~~~~~~~~~~~~~~dg~~ 189 (373)
T 2mad_H 125 PYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSSP-----------TCYHIHPGAPSTFYLLCAQGGL 189 (373)
T ss_pred CCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCCC-----------ceEEEEeCCCceEEEEcCCCCE
Confidence 23447788 999999998874 47899999 753 22222 2111 1234443445567777889999
Q ss_pred EEEeCCCCCCCceeeec-----CCCCce-eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEee------
Q psy17342 245 YSACRHGNKAGNVECYE-----GHEGPV-VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNE------ 310 (401)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-----~~~~~v-~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~------ 310 (401)
.+++. ..+ ...... ....++ ....+.+.. +.+++.. ..+.+.+.|+.... .+..+..
T Consensus 190 ~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 190 AKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQANKS-----GRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred EEEEC-CCc--EEEEEeccccccCCcceeecceeEecC-----CEEEEEc-CCceEEEEeccCCcceEeeeeeecCCccc
Confidence 99988 332 121111 111221 123344442 3444443 57899999986542 2222221
Q ss_pred ----cCCceEEEEECCCCCcEEEEEe---------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc-EEEEE
Q psy17342 311 ----FRDYVMDVQWSPINPALFATVE---------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT-QLCVG 376 (401)
Q Consensus 311 ----~~~~v~~v~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~ 376 (401)
.......+.++|+++.++++.. .++.|.++|..+.+.+..+. .......++|+|||+ .++++
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEE
Confidence 1223445788999885555443 24689999999887655543 233578999999999 77777
Q ss_pred e-cCCcEEEEEeccCccceeee
Q psy17342 377 D-EKGAITMFDVGEVGIACLKF 397 (401)
Q Consensus 377 ~-~dg~v~iw~~~~~~~~~l~~ 397 (401)
. .++.|.++|+.+++ .++.
T Consensus 337 ~~~~~~V~ViD~~t~~--vv~~ 356 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGD--QDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCC--EEee
Confidence 6 58999999999984 4444
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=2.3e-12 Score=110.61 Aligned_cols=248 Identities=13% Similarity=0.085 Sum_probs=160.3
Q ss_pred CCCeeEEEEeCCCCceEEE-------EecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeC
Q psy17342 118 QSPVLSCCFAKFNPYLILG-------GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISN 189 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~-------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~ 189 (401)
-....+++|.+++ .++++ +..++.|.+||..+++...... + ...++...+.++++ .++ +.++++..
T Consensus 17 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~-~~~~~~~~~~~i~~--~~~~g~l~v~~~- 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P-EVNGYGGIPAGCQC--DRDANQLFVADM- 90 (314)
T ss_dssp CTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C-EETTEECCEEEEEE--CSSSSEEEEEET-
T ss_pred CCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c-ccCCCCCCCceEEE--ecCCCcEEEEEC-
Confidence 3466899999877 67766 5678899999987765422110 0 01124567889998 888 66555554
Q ss_pred CCcEEEeeccCCCCCccc-cccccccccCCccceEEEEeccCCCCeEEEEcCC---------------ceEEEEeCCCCC
Q psy17342 190 DGRLCSWSLEMLSSPQET-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED---------------GNVYSACRHGNK 253 (401)
Q Consensus 190 dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------~~i~~~~~~~~~ 253 (401)
.+.|.+||.. +..... .... .......+.+++++ ++++++++...+ +.|+.++.. ..
T Consensus 91 ~~~l~~~d~~--g~~~~~~~~~~---~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (314)
T 1pjx_A 91 RLGLLVVQTD--GTFEEIAKKDS---EGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp TTEEEEEETT--SCEEECCSBCT---TSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred CCCEEEEeCC--CCEEEEEeccC---CCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence 4478889876 222111 1110 01123457899999 788777766554 577777764 21
Q ss_pred CCceeeecCCCCceeeeecC----ccCCCCCCCcE-EEEEeCCCeEEEEEee-CCCc-----eEEEeecC-CceEEEEEC
Q psy17342 254 AGNVECYEGHEGPVVGLSSH----RAQGHIDFSHL-YLTSSYDWSVKLWNIK-ENKP-----VHSFNEFR-DYVMDVQWS 321 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~----~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~~~~-----~~~~~~~~-~~v~~v~~~ 321 (401)
...+..+......++++ |+ ++. +++...++.|.+||.. +++. ...+..+. ..+..++++
T Consensus 164 ---~~~~~~~~~~~~~i~~~~~~d~d------g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 164 ---MIQVDTAFQFPNGIAVRHMNDGR------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp ---EEEEEEEESSEEEEEEEECTTSC------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred ---EEEeccCCCCcceEEEecccCCC------CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 22222233456788888 87 544 4555568899999987 3432 22233333 567899999
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE-EecCCcEEEEEeccCc
Q psy17342 322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV-GDEKGAITMFDVGEVG 391 (401)
Q Consensus 322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~v~iw~~~~~~ 391 (401)
++|. ++++...++.|.+||..+++....+. .+...+.+++|+++|+.|++ ...++.|..|++...+
T Consensus 235 ~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 235 EDNN-LLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp TTCC-EEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCCC-EEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9996 77777678899999988665544432 23467899999999995554 4556789999997654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=7.1e-13 Score=114.64 Aligned_cols=294 Identities=9% Similarity=0.020 Sum_probs=180.0
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSG 141 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg 141 (401)
....|+++.+.+..... ...++.|.+.|..+.+.+.++..+ ..+ . ++++|+++.+.++.. .++
T Consensus 38 ~~~~pd~~~vyV~~~~~-----~~~~~~V~ViD~~t~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAH-----FAAVTQQFVIDGEAGRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCCTTEEEEEECGG-----GCSSEEEEEEETTTTEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEcCcc-----cCCCCEEEEEECCCCeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCC
Confidence 45578999888887310 001689999999988877766554 333 4 999999865544432 367
Q ss_pred eEEEEECCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCC
Q psy17342 142 QIVLWDTRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
.|.+||..+.+.......+. .-......-..+.+ +|+|++++.+.. ++.|.++|+.+.. ....+.+..
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~g------ 180 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPD------ 180 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS------
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECCC------
Confidence 89999999876543221100 00001123446777 999999888864 6889999998622 222221111
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCcee-eeecC-ccCCCCCCCcEEEEEeCCC
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVV-GLSSH-RAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~-~i~~~-~~~~~~~~~~~l~s~~~d~ 292 (401)
+ .. ..|.....+++.+.||.+.+.++.... +.......+ ..++. ...|. ++ +++++ .+.+|
T Consensus 181 ---~-~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~d------G~~~~-vs~~g 247 (386)
T 3sjl_D 181 ---C-YH-IFPTAPDTFFMHCRDGSLAKVAFGTEG-TPEITHTEVFHPEDEFLINHPAYSQKA------GRLVW-PTYTG 247 (386)
T ss_dssp ---E-EE-EEEEETTEEEEEETTSCEEEEECCSSS-CCEEEECCCCSCTTSCBCSCCEEETTT------TEEEE-EBTTS
T ss_pred ---c-ce-eecCCCceeEEECCCCCEEEEECCCCC-eEEEeecceeccccccccccceeEcCC------CcEEE-EeCCC
Confidence 1 11 223455667788888888888876411 111111111 12221 12333 23 44444 55589
Q ss_pred eEEEEEeeCCC--ceEEEe----------ecCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcce
Q psy17342 293 SVKLWNIKENK--PVHSFN----------EFRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 293 ~i~iwd~~~~~--~~~~~~----------~~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~ 351 (401)
+|.+.|+.... .+..+. ...+....++++|+++.++++... .+.|.+.|+.+.+.+..+
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i 327 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 327 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE
Confidence 99999986554 222332 012233457779998866665432 257999999998877665
Q ss_pred EEeecCCCCeEEEEecCCCc-EEEEE-ecCCcEEEEEeccCccceeeeeec
Q psy17342 352 SAIVEGAPALSRVTWTPNGT-QLCVG-DEKGAITMFDVGEVGIACLKFITS 400 (401)
Q Consensus 352 ~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg~v~iw~~~~~~~~~l~~~~~ 400 (401)
.. + ..++.+++++|++ .|++. ..++.|.++|..++ +.++++..
T Consensus 328 ~v--g--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~--k~~~~i~~ 372 (386)
T 3sjl_D 328 EM--G--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--EELRSVNQ 372 (386)
T ss_dssp EE--E--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--CEEEEECC
T ss_pred EC--C--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--cEEEEecC
Confidence 53 2 3578999999996 66664 45899999999988 45665543
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=8.9e-13 Score=110.59 Aligned_cols=211 Identities=9% Similarity=0.016 Sum_probs=146.8
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS 174 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (401)
.++.|.+||.++++.+-++..+....+.++.+.|++ +++++ .++.|..||. +++....... .....+.++.
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~ 83 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-DGRELWNIAA-----PAGCEMQTAR 83 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-TSCEEEEEEC-----CTTCEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-CCCEEEEEcC-----CCCccccccE
Confidence 799999999988887765554322478999999987 67773 4778999998 5554322211 1234677888
Q ss_pred EeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC
Q psy17342 175 VIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253 (401)
Q Consensus 175 ~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 253 (401)
+ .++++.+++.+. ++.+..++.. ++......+... ...+......+++. ++++++++...++.|..||..+
T Consensus 84 ~--~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~-~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~G-- 155 (276)
T 3no2_A 84 I--LPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETG-IERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPNG-- 155 (276)
T ss_dssp E--CTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCS-CSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTTS--
T ss_pred E--CCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCC-CCcccccccCceEC-CCCCEEEEecCCCEEEEECCCC--
Confidence 7 899999999887 7777777653 322222222110 01122234455667 7899999999999999999863
Q ss_pred CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------CceEEEEECCCCCcE
Q psy17342 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------DYVMDVQWSPINPAL 327 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~~~~ 327 (401)
+.+..+... ....++...++ ++++++++.+++|..+|..+++.+.++..+. ..+..++..++|. +
T Consensus 156 -~~~w~~~~~-~~~~~~~~~~~------g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i 226 (276)
T 3no2_A 156 -QLLNSVKLS-GTPFSSAFLDN------GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-L 226 (276)
T ss_dssp -CEEEEEECS-SCCCEEEECTT------SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-E
T ss_pred -CEEEEEECC-CCccceeEcCC------CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC-E
Confidence 345666543 34556677776 7889888888899999999999999987532 2378889999997 5
Q ss_pred EEEE
Q psy17342 328 FATV 331 (401)
Q Consensus 328 l~~~ 331 (401)
+++.
T Consensus 227 ~v~~ 230 (276)
T 3no2_A 227 YICN 230 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=4.3e-13 Score=116.02 Aligned_cols=275 Identities=13% Similarity=0.059 Sum_probs=166.6
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec------CCCeeEEEEeCCCCceEEEEe-cCCe
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFNPYLILGGT-YSGQ 142 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~g~-~dg~ 142 (401)
.++++|||+++.++.....+...+..++.|.+||..+.+.+.++.... ......++|+|+++.++++.. .++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999988775100000000135789999999887776665532 125678999999854444432 2689
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|.++|..+.+...... ..+ . ...+ ......+++.+.||++.+.++........... .. .......+
T Consensus 162 VsVID~~t~~vv~tI~----v~g----~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~--~~~~~~~~ 227 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLD----VPD----C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EV--FHPEDEFL 227 (386)
T ss_dssp EEEEETTTTEEEEEEE----CCS----E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CC--CSCTTSCB
T ss_pred EEEEECCCCcEEEEEE----CCC----c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeec-ce--eccccccc
Confidence 9999999887543321 111 1 1222 33445677888899999998865332211110 00 11111122
Q ss_pred E-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---------C-CCCceeeeecCccCCCCCCCcEEEEEeC-
Q psy17342 223 L-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---------G-HEGPVVGLSSHRAQGHIDFSHLYLTSSY- 290 (401)
Q Consensus 223 ~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---------~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~- 290 (401)
. ...|.++++++++ .+.+|.+++.|..+........+. + ..+....++++|.. +.++++-..
T Consensus 228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-----~~lyV~~~~~ 301 (386)
T 3sjl_D 228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-----DRIYLLVDQR 301 (386)
T ss_dssp CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-----TEEEEEEEEC
T ss_pred cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC-----CeEEEEeccc
Confidence 1 2355435665444 566899999998755432222221 0 11233346667763 344444321
Q ss_pred --------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC-cEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342 291 --------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL 361 (401)
Q Consensus 291 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 361 (401)
..+|.+.|+.+++.+.++.. ...+.+++++|+++ .++++...++.|.++|..+++.+..+.. ...-
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~----~~~p 376 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ----LGHG 376 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC----CCSS
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC----CCCC
Confidence 25799999999999999886 44788999999996 3444456689999999999886655432 2334
Q ss_pred EEEEecCC
Q psy17342 362 SRVTWTPN 369 (401)
Q Consensus 362 ~~~~~s~~ 369 (401)
+.+.+++|
T Consensus 377 ~~l~~s~d 384 (386)
T 3sjl_D 377 PQVITTAD 384 (386)
T ss_dssp CCEEEECC
T ss_pred ceeEECCc
Confidence 45666665
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.2e-11 Score=105.15 Aligned_cols=239 Identities=6% Similarity=-0.025 Sum_probs=164.6
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
...+.++++.+++ ++.++...++.|.+||.. +.... .....+...+.++++ .+++..+++...++.|..|+
T Consensus 14 ~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~-----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 14 DTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITE-----YPLPTPDAKVMCLTI--SSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEE-----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEEC
T ss_pred CCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEE-----ecCCcccCceeeEEE--CCCCCEEEeCCCCCeEEEEC
Confidence 3578999999977 566655557899999987 43221 111234567889998 88888888877788899998
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG 277 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 277 (401)
... . .....+. .....+..+++. +++.++++...++.|..++... .. .......+...+..+++.|+
T Consensus 85 ~~g--~-~~~~~~~-----~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~i~~~~~-- 151 (299)
T 2z2n_A 85 KKG--I-IKEYTLP-----NPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDDG-KI-REYELPNKGSYPSFITLGSD-- 151 (299)
T ss_dssp TTS--C-EEEEECS-----STTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CE-EEEECSSTTCCEEEEEECTT--
T ss_pred CCC--c-EEEEeCC-----CcCCCceeeEEC-CCCCEEEEecCCceEEEECCCC-CE-EEecCCCCCCCCceEEEcCC--
Confidence 752 1 1111111 134468899999 6787777777788999998832 21 11122234456889999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEEeeCCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec
Q psy17342 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE 356 (401)
Q Consensus 278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 356 (401)
+.++++...++.|..||. +++.... +..+...+.++++++++. ++++...++.|.+||. +++. ..+.. ..
T Consensus 152 ----g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~-~~~~~-~~ 222 (299)
T 2z2n_A 152 ----NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEI-TEFKI-PT 222 (299)
T ss_dssp ----SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCE-EEEEC-SS
T ss_pred ----CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcE-EEEEC-CC
Confidence 677777766789999998 6654432 222345688999999986 6776666889999998 5542 22211 12
Q ss_pred CCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 357 GAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 357 ~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
....+..++++++|+++++...++.|..||.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 3467889999999997776667788999998
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=7.3e-13 Score=114.44 Aligned_cols=247 Identities=7% Similarity=-0.050 Sum_probs=158.3
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
....+.+. +..+..+.. .++.|.+||.++++.+.++ ........+++++++ .+.++...++.|.+|
T Consensus 45 ~~~~i~~~--~~~lyv~~~---------~~~~v~viD~~t~~~~~~i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~i 110 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVN---------NSHVIFAIDINTFKEVGRI--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFII 110 (328)
T ss_dssp CEEEEEEE--TTEEEEEEG---------GGTEEEEEETTTCCEEEEE--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEE
T ss_pred cceEEEEE--CCEEEEEEc---------CCCEEEEEECcccEEEEEc--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEE
Confidence 35667774 345555552 5789999999988766555 335678999998876 555555478999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
|..+.+......... ..+.......+++ .++..+++.. .++.|.++|+.+.. ....... ......+
T Consensus 111 D~~t~~~~~~i~~g~-~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~--------g~~p~~i 177 (328)
T 3dsm_A 111 NPKTYEITGYIECPD-MDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI--------GIQPTSL 177 (328)
T ss_dssp ETTTTEEEEEEECTT-CCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC--------SSCBCCC
T ss_pred ECCCCeEEEEEEcCC-ccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc--------CCCccce
Confidence 998876432211100 0011123446665 2444455544 48899999987532 1111111 1234577
Q ss_pred EeccCCCCeEEEEcCC----------ceEEEEeCCCCCCCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342 226 AFPQNDVNNFVVGCED----------GNVYSACRHGNKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV 294 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d----------~~i~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i 294 (401)
+++ +++++++++..+ +.|+++|....+ ....+... ......++++|+ ++.+..+.. .|
T Consensus 178 ~~~-~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d------~~~lyv~~~--~v 246 (328)
T 3dsm_A 178 VMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGT------RDTLYWINN--DI 246 (328)
T ss_dssp EEC-TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTT------SCEEEEESS--SE
T ss_pred EEc-CCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecC------CCEEEEEcc--EE
Confidence 888 778776666554 789999987443 34344322 235789999998 566666554 89
Q ss_pred EEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEE----ecCCEEEEEeCCCCCCCcceE
Q psy17342 295 KLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATV----EVAGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 295 ~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~ 352 (401)
.+||..+++.... +.........++++|++..++++. ..++.|.+||.. ++.+..+.
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 9999987765321 221235688999999655577777 678899999998 76655543
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=1.9e-12 Score=111.16 Aligned_cols=246 Identities=11% Similarity=0.059 Sum_probs=159.9
Q ss_pred cceEEEEecCCCCCeEE-------EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCCCCceE
Q psy17342 66 RNVTYMDWSTQHPELLL-------ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKFNPYLI 134 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~-------~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l 134 (401)
....+++|++++..+++ .. .++.|.+||..+++.. .+.. .+...+.++++.+++.+++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~----------~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGK----------PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTE----------ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCC----------CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEE
Confidence 34678999999976666 34 4789999998766542 2221 1236789999999723555
Q ss_pred EEEecCCeEEEEECCCCCCCce-eeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------------CcEEEeec
Q psy17342 135 LGGTYSGQIVLWDTRVQKKTPV-HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------------GRLCSWSL 198 (401)
Q Consensus 135 ~~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~~wd~ 198 (401)
++. ..+.|.+||.. ++.... .. .........+.++++ .+++..+++...+ +.|..++.
T Consensus 87 v~~-~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 87 VAD-MRLGLLVVQTD-GTFEEIAKK--DSEGRRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp EEE-TTTEEEEEETT-SCEEECCSB--CTTSCBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred EEE-CCCCEEEEeCC-CCEEEEEec--cCCCccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 554 34579999987 443211 10 000112245788988 8888877776655 45666654
Q ss_pred cCCCCCccccccccccccCCccceEEEEec----cCCCCe-EEEEcCCceEEEEeCCC-CCC---CceeeecCCC-Ccee
Q psy17342 199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFP----QNDVNN-FVVGCEDGNVYSACRHG-NKA---GNVECYEGHE-GPVV 268 (401)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~d~~i~~~~~~~-~~~---~~~~~~~~~~-~~v~ 268 (401)
. +.... +.. .......++++ | +++. +++...++.|++|+... ... .....+..+. ..+.
T Consensus 161 ~--g~~~~---~~~-----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 161 D--GQMIQ---VDT-----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp T--SCEEE---EEE-----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred C--CCEEE---ecc-----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence 3 21111 111 22345677776 5 4544 45556788999998752 111 0122333443 5678
Q ss_pred eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
.+++.++ ++++++...++.|.+||..+++.+..+..+...+.+++|+|++..++++...++.|..|++...
T Consensus 230 ~i~~d~~------G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 230 GMDFDED------NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEBTT------CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceEECCC------CCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 8999987 7888887778999999998778777777766789999999999756666666789999998753
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=3.5e-12 Score=122.68 Aligned_cols=253 Identities=7% Similarity=-0.041 Sum_probs=159.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC----
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---- 141 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---- 141 (401)
..+..++|||||++|+.+.... ++....|++||+++++.+... .. ...+..++|+|+ ..++++. .++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~~~-~~-~~~~~~~~wspD-~~l~~~~-~~~~~~~ 233 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLADE-LK-WVKFSGLAWLGN-DALLYSR-FAEPKEG 233 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEEEE-EE-EEESCCCEESTT-SEEEEEE-CCCC---
T ss_pred EEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCCcc-CC-CceeccEEEECC-CEEEEEE-ecCcccc
Confidence 3688999999999999887311 111257999999987764321 11 222467899998 5555544 443
Q ss_pred ----------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-----cEEEeeccCCCCCcc
Q psy17342 142 ----------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-----RLCSWSLEMLSSPQE 206 (401)
Q Consensus 142 ----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~ 206 (401)
.|++|++.++...... ......+...+..+.| +++|++|+..+.++ .|.+||+...... .
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~l--v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~ 308 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQP--VFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-P 308 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-C
T ss_pred cccccCCCCCEEEEEECCCCchhCEE--EeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCc-c
Confidence 3889998766532111 0111233345888888 99999888877544 7999998752101 0
Q ss_pred ccccccccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCC
Q psy17342 207 TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS 282 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 282 (401)
...+.. +...+... +. ++++.|+..+. ++.|++|++..........+..+...+.++++. . +
T Consensus 309 ~~~l~~-----~~~~~~~~-~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~------~ 374 (741)
T 1yr2_A 309 VTALIP-----DLKAQWDF-VD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G------N 374 (741)
T ss_dssp CEEEEC-----SSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B------T
T ss_pred cEEecC-----CCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C------C
Confidence 111111 22233333 24 57777777665 445999998642111233344455556677776 2 5
Q ss_pred cEEEEEeCCCeEEEEEee-CCCceEEEee-cCCceEEEEECCCCCcEEEEEe---cCCEEEEEeCCCCC
Q psy17342 283 HLYLTSSYDWSVKLWNIK-ENKPVHSFNE-FRDYVMDVQWSPINPALFATVE---VAGRVDLWNLNLDT 346 (401)
Q Consensus 283 ~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~---~d~~i~iwd~~~~~ 346 (401)
.++++...|+..+||.+. +++....+.. +.+.+..+.++|+++.++++.+ ..++|++||+.+++
T Consensus 375 ~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788888889988888776 4565666654 3567889999999875555544 34789999998754
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=1.7e-11 Score=104.34 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=155.8
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
--.+..|+|++..|+.+.. .++.|..||..+++. ........+.+++++|++ +++++ . ++.|.+|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~---------~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~ 78 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDI---------PAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSG-GYVAT-I-GTKFCAL 78 (297)
T ss_dssp BEEEEEEETTTTEEEEEET---------TTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTS-SEEEE-E-TTEEEEE
T ss_pred cccCCeEECCCCEEEEEEC---------CCCEEEEEECCCCcE---EEEeCCCceEEEEECCCC-CEEEE-E-CCeEEEE
Confidence 3567889997777776663 688999999986543 233446789999999988 45544 3 5689999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------CcEEEeeccCCCCCccccccccccccC
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------GRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
|..+++........ .......++++++ .++|.++++.... ..-.+|.+........ +..
T Consensus 79 d~~~g~~~~~~~~~--~~~~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~----- 146 (297)
T 3g4e_A 79 NWKEQSAVVLATVD--NDKKNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFD----- 146 (297)
T ss_dssp ETTTTEEEEEEECC--TTCSSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEE-----
T ss_pred ECCCCcEEEEEecC--CCCCCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eee-----
Confidence 99876543222110 0112345788888 8899876654321 2345665543221111 111
Q ss_pred CccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCc-----eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 218 KNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGN-----VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
.......++|+ ++++.+ ++.+.++.|.+|++....... ...+..+.+....+++.++ +++.++....
T Consensus 147 ~~~~pngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~------G~lwva~~~~ 219 (297)
T 3g4e_A 147 QVDISNGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE------GKLWVACYNG 219 (297)
T ss_dssp EESBEEEEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT------SCEEEEEETT
T ss_pred ccccccceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC------CCEEEEEcCC
Confidence 22346789999 777765 556678899999874222211 2223334456788999888 7888888778
Q ss_pred CeEEEEEeeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEecC
Q psy17342 292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEVA 334 (401)
Q Consensus 292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~d 334 (401)
+.|..||..+++.+..+..+...+++++|. |+++.++++...+
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 899999998899998888877789999998 8887666666543
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=5.6e-12 Score=111.05 Aligned_cols=284 Identities=8% Similarity=0.035 Sum_probs=173.5
Q ss_pred CCCCCeEEEEeccCCCCCCCCC----cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCC
Q psy17342 75 TQHPELLLASYHRNKEAPNEPD----GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSG 141 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg 141 (401)
|+++.+.++.. .+ +.|.++|..+.+.+.++..+ ..+ .++++|+++.++++.. .++
T Consensus 82 ~~~~~vyV~n~---------~~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDP---------AHFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEEC---------TTTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECC---------CcCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 56666766662 22 79999999998888777665 334 8999999865555432 467
Q ss_pred eEEEEECCCCCCCceeecc-ccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCC
Q psy17342 142 QIVLWDTRVQKKTPVHRTP-LSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
.|.++|..+.+........ ..-.........+.+ ++++++++.+.. ++.|.+.|+.+.. ....+.+..
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g------ 220 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD------ 220 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS------
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC------
Confidence 8999999887654322110 000001122346677 999999998874 5789999997632 112221111
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee----eecCCCCce-eeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE----CYEGHEGPV-VGLSSHRAQGHIDFSHLYLTSSYDWS 293 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~----~~~~~~~~v-~~i~~~~~~~~~~~~~~l~s~~~d~~ 293 (401)
. ....|.....+++.+.||.+.+.+....+ ... .+.....++ ..+.+.++ +..++..+..+.
T Consensus 221 ---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~d------g~~~~~~s~~g~ 287 (426)
T 3c75_H 221 ---C--YHIFPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSLR------SGRLVWPTYTGK 287 (426)
T ss_dssp ---E--EEEEEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECTT------TCEEEEEBTTSE
T ss_pred ---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecCC------CCEEEEEeCCCc
Confidence 1 12222223555666677777777663222 221 111112221 12345666 455555566889
Q ss_pred EEEEEeeCCCce--EEEee----------cCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcceE
Q psy17342 294 VKLWNIKENKPV--HSFNE----------FRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 294 i~iwd~~~~~~~--~~~~~----------~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~ 352 (401)
+.+.|....... ..+.. .......++++|+++.++++... ++.|.+.|..+.+.+..+.
T Consensus 288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~ 367 (426)
T 3c75_H 288 IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE 367 (426)
T ss_dssp EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence 999998654321 11110 01112236899998866665431 3589999999988776664
Q ss_pred EeecCCCCeEEEEecCCCc-EEEEEe-cCCcEEEEEeccCccceeeee
Q psy17342 353 AIVEGAPALSRVTWTPNGT-QLCVGD-EKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 353 ~~~~~~~~v~~~~~s~~g~-~l~~~~-~dg~v~iw~~~~~~~~~l~~~ 398 (401)
. + .....+.|+|||+ ++++.. .++.|.++|+.+. +.++++
T Consensus 368 v--g--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~--kvv~tI 409 (426)
T 3c75_H 368 L--G--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG--EELRSV 409 (426)
T ss_dssp E--E--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC--CEEEEE
T ss_pred C--C--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC--CEEEEe
Confidence 3 2 2477899999999 888887 5899999999998 455554
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=3.3e-11 Score=105.56 Aligned_cols=257 Identities=9% Similarity=-0.046 Sum_probs=153.4
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-c-----CCCeeEEEEeCCCCceEEEEe-c-CC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-C-----QSPVLSCCFAKFNPYLILGGT-Y-SG 141 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~g~-~-dg 141 (401)
.++++|||+.+.++.........+..++.|.+||..+.+.+...... . ......++|+|+++ +|+.+. . ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCC
Confidence 89999999999888621111111123678999999877665544432 0 12356899999985 555444 3 57
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
.|.++| .+++..... . .... ++.+. ......+++.+.||.+.+++. ... .......... . ....+
T Consensus 149 ~v~viD-~t~~~~~~~-i-----~~~~---~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~-~-~~~~p 213 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQL-L-----SSPT---CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAM-L-TAAQN 213 (373)
T ss_pred eEEEEE-CCCCEEeEE-c-----CCCc---eEEEE-eCCCceEEEEcCCCCEEEEEC-CCc-EEEEEecccc-c-cCCcc
Confidence 899999 877543110 1 1111 12231 223345677788999999998 432 2211110000 0 01111
Q ss_pred -eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----------CCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342 222 -VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----------EGPVVGLSSHRAQGHIDFSHLYLTSSY 290 (401)
Q Consensus 222 -v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~~~v~~i~~~~~~~~~~~~~~l~s~~~ 290 (401)
.....+. +++..++..+..+.+.+.|........+..+.-. ......+.++|+ ++.+..+..
T Consensus 214 ~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d------~~~lyV~~~ 286 (373)
T 2mad_H 214 LLTQPAQA-NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS------SDGIYLLTS 286 (373)
T ss_pred eeecceeE-ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC------CCEEEEEec
Confidence 1234455 4444544445778999999865432222222211 122334677777 444444332
Q ss_pred ----------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcc
Q psy17342 291 ----------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPA 350 (401)
Q Consensus 291 ----------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~ 350 (401)
.+.|.++|..+++.+.++.. .....+++|+|+|+.+++++. .++.|.++|+.+++.+..
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999999998875 446889999999984566665 589999999998876544
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=3.6e-11 Score=102.33 Aligned_cols=227 Identities=13% Similarity=0.124 Sum_probs=148.7
Q ss_pred CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342 120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE 199 (401)
Q Consensus 120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~ 199 (401)
-..+..|+|++..++++...++.|..||..++... . ......+.++++ .+++.++++ . ++.|.+||..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-------~~~~~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-------VTMDAPVSSVAL--RQSGGYVAT-I-GTKFCALNWK 81 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-------EECSSCEEEEEE--BTTSSEEEE-E-TTEEEEEETT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-------EeCCCceEEEEE--CCCCCEEEE-E-CCeEEEEECC
Confidence 44678999977678888888899999999876532 1 123467889998 889985554 4 5678999986
Q ss_pred CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-----------CCceEEEEeCCCCCCCceeeecCCCCcee
Q psy17342 200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----------EDGNVYSACRHGNKAGNVECYEGHEGPVV 268 (401)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~ 268 (401)
+.. ........ .......+..++++ ++++++++.. ..+.|+.++.... ...+..+....+
T Consensus 82 ~g~-~~~~~~~~---~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~~~~~~~~~~pn 152 (297)
T 3g4e_A 82 EQS-AVVLATVD---NDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH----VKKYFDQVDISN 152 (297)
T ss_dssp TTE-EEEEEECC---TTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC----EEEEEEEESBEE
T ss_pred CCc-EEEEEecC---CCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEECCCC----EEEEeecccccc
Confidence 421 11111110 01123457889999 7888665442 2345666654321 222233334567
Q ss_pred eeecCccCCCCCCCc-EEEEEeCCCeEEEEEee--CCCce-----EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342 269 GLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIK--ENKPV-----HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340 (401)
Q Consensus 269 ~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~~-----~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw 340 (401)
.++|+|+ ++ ++++.+.++.|.+||+. +++.. ..+..+......++++++|. +.++...++.|..|
T Consensus 153 gi~~spd------g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~ 225 (297)
T 3g4e_A 153 GLDWSLD------HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRL 225 (297)
T ss_dssp EEEECTT------SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEE
T ss_pred ceEEcCC------CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEE
Confidence 8999998 55 44566668899999983 44421 22223345688999999996 77777778899999
Q ss_pred eCCCCCCCcceEEeecCCCCeEEEEec-CCCcEEEEEe
Q psy17342 341 NLNLDTEVPATSAIVEGAPALSRVTWT-PNGTQLCVGD 377 (401)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~ 377 (401)
|..+++.+..+. .+...+++++|. |+++.|++.+
T Consensus 226 d~~tG~~~~~i~---~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 226 DPVTGKRLQTVK---LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CTTTCCEEEEEE---CSSSBEEEEEEESGGGCEEEEEE
T ss_pred cCCCceEEEEEE---CCCCCceEEEEeCCCCCEEEEEc
Confidence 998777655443 234578999998 8887776554
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=2.2e-12 Score=112.09 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=127.6
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC---------CCceEEEecCCCeeEEEEeCCCCceEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---------TTPEFEFFCQSPVLSCCFAKFNPYLILG 136 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 136 (401)
..+..+++++....+++|+ .+ .+.+|+++... ..+........ |+.++| ++ .+|++
T Consensus 38 ~~~nlLais~~~gll~a~~----------~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAAS----------GS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEE----------TT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEE
T ss_pred ccccEEEEcCCCCEEEEeC----------CC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEE
Confidence 4699999999999999998 44 66679876432 23334455666 999999 56 67888
Q ss_pred EecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342 137 GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ 216 (401)
Q Consensus 137 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 216 (401)
+ .++.|++||+.+..... ....|..++.++.+ .+. .+++++.||.|.+||+..... . .
T Consensus 103 ~-~~~~l~v~dv~sl~~~~------~~~~~~~~v~~i~~--~~p--~~av~~~dG~L~v~dl~~~~~-~---~------- 160 (388)
T 1xip_A 103 S-TRNALYSLDLEELSEFR------TVTSFEKPVFQLKN--VNN--TLVILNSVNDLSALDLRTKST-K---Q------- 160 (388)
T ss_dssp E-ESSEEEEEESSSTTCEE------EEEECSSCEEEEEE--CSS--EEEEEETTSEEEEEETTTCCE-E---E-------
T ss_pred E-cCCcEEEEEchhhhccC------ccceeecceeeEEe--cCC--CEEEEECCCCEEEEEccCCcc-c---c-------
Confidence 7 88999999998765321 12456677888877 333 288899999999999975221 1 1
Q ss_pred CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee------c---CCCCceeeeecCccCCCCCCCcEEEE
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY------E---GHEGPVVGLSSHRAQGHIDFSHLYLT 287 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~------~---~~~~~v~~i~~~~~~~~~~~~~~l~s 287 (401)
....|+|++|+ +++ +++|..||.+++|+...........+ . +|...|.+|.|.++ ..++++
T Consensus 161 -~~~~Vs~v~WS-pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~------~~flv~ 230 (388)
T 1xip_A 161 -LAQNVTSFDVT-NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP------QDFLAV 230 (388)
T ss_dssp -EEESEEEEEEC-SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS------SEEEEE
T ss_pred -ccCCceEEEEc-CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC------CeEEEE
Confidence 33589999999 677 78899999999998764431102233 2 47889999999997 577776
Q ss_pred E
Q psy17342 288 S 288 (401)
Q Consensus 288 ~ 288 (401)
-
T Consensus 231 y 231 (388)
T 1xip_A 231 F 231 (388)
T ss_dssp E
T ss_pred E
Confidence 3
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=9.4e-13 Score=114.38 Aligned_cols=179 Identities=11% Similarity=0.086 Sum_probs=128.7
Q ss_pred cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC-----CccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342 169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS-----PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN 243 (401)
Q Consensus 169 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 243 (401)
+++.+++ ++...++++|+.++ +.+|++..... ... .+... ...... |+.++| +++.|+++ .++.
T Consensus 39 ~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-~~~~~--~~~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-LTFKW--EKEIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-CCCSE--EEECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred cccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-ccceE--EeeCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 6788888 88899999999884 56698764320 000 11100 112445 999999 78899988 8899
Q ss_pred EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342 244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI 323 (401)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 323 (401)
|++||..... .......|..++.++.+.+. + ++++..||.|.+||+.++.... +...|.+++|||+
T Consensus 108 l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p-------~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk 173 (388)
T 1xip_A 108 LYSLDLEELS--EFRTVTSFEKPVFQLKNVNN-------T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS 173 (388)
T ss_dssp EEEEESSSTT--CEEEEEECSSCEEEEEECSS-------E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS
T ss_pred EEEEEchhhh--ccCccceeecceeeEEecCC-------C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC
Confidence 9999987543 34455667788888776653 3 8888999999999998776543 3458999999999
Q ss_pred CCcEEEEEecCCEEEEEeCCCCCC--CcceEE------eecCCCCeEEEEecCCCcEEEE
Q psy17342 324 NPALFATVEVAGRVDLWNLNLDTE--VPATSA------IVEGAPALSRVTWTPNGTQLCV 375 (401)
Q Consensus 324 ~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~s~~g~~l~~ 375 (401)
| ++.|..||.+++|+...... ...+.. ..+|...|.++.|.+++.++++
T Consensus 174 G---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 174 Q---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 8 46688899999998876542 111110 0135678999999999999886
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=8.3e-11 Score=104.47 Aligned_cols=245 Identities=12% Similarity=-0.008 Sum_probs=159.1
Q ss_pred CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEe
Q psy17342 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSW 196 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~w 196 (401)
.....|+|++++ +++++...++.|++||..++....... . ..... ++| ++++..|+++..++ .|.++
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~------~-~~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHP------G-FKGGK-PAV--TKDKQRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEE------T-CCBCB-CEE--CTTSSEEEEEBSSTTCEEEEE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeec------c-CCCCc-eeE--ecCCCcEEEEecCCCceEEEE
Confidence 367899999977 677777777899999998765432211 1 22223 788 89999888888866 68888
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee--ecCCCCce--eeeec
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC--YEGHEGPV--VGLSS 272 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~v--~~i~~ 272 (401)
+..........-.+ .......+.+++++ ++...|+++..++.|+.|+........... ..++...- ..+++
T Consensus 200 d~~~~~~~~~~g~~----~~~~~~~p~~iav~-p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 200 MKASGWAPTRIGQL----GSTFSGKIGAVALD-ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EGGGTTCEEEEEEC----CTTSCSCCCBCEEC-TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred EcCCCceeEEeeec----cchhcCCcEEEEEe-CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 77542211111000 01133456788999 544455557778899999987543211100 11222222 38999
Q ss_pred CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC---------------CceEEEEECCCCCcEEEEEe-cCCE
Q psy17342 273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---------------DYVMDVQWSPINPALFATVE-VAGR 336 (401)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~v~~~~~~~~~l~~~~-~d~~ 336 (401)
+|.. +.++++-..++.|+.|+... + +..+.++. .....++++|+|. ++++-. .++.
T Consensus 275 ~p~~-----g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~ 346 (409)
T 3hrp_A 275 YFVD-----SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYC 346 (409)
T ss_dssp ETTT-----TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCE
T ss_pred eCCC-----CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCE
Confidence 9953 57777777789999998753 3 34444432 3478999999997 778877 7899
Q ss_pred EEEEeCCCCCCCcceEEee---c---------CCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342 337 VDLWNLNLDTEVPATSAIV---E---------GAPALSRVTWTPNGTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 337 i~iwd~~~~~~~~~~~~~~---~---------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~ 388 (401)
|+.|++.++.. ..+.... + .-.....++++++|.++++-..++.|+.++++
T Consensus 347 I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 347 LRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 99999766542 2211100 0 01357899999999888888888889888763
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=3.7e-10 Score=96.01 Aligned_cols=238 Identities=7% Similarity=-0.030 Sum_probs=162.1
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
...+.++++.+++ .+.++...++.|.+|+.. ++... .....+...+.++++ .+++..+++...++.|..+|
T Consensus 19 ~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~-----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 19 DSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKE-----FEVPTPDAKVMCLIV--SSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEE-----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEEC
T ss_pred CCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEE-----EECCCCCCcceeEEE--CCCCCEEEEecCCCeEEEEC
Confidence 3578899999977 566666567899999987 43221 111234467889988 78888777777788899998
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG 277 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 277 (401)
.. +.. ...... .....+..+++. +++.++++...++.|..++.. ... ....+......+.++++.++
T Consensus 90 ~~--g~~-~~~~~~-----~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~~-- 156 (300)
T 2qc5_A 90 KK--GGF-TEYPLP-----QPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGSD-- 156 (300)
T ss_dssp TT--SCE-EEEECS-----STTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT--
T ss_pred CC--CCe-EEecCC-----CCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCE-EEccCCCCCCCceeEEECCC--
Confidence 76 221 111111 123568899999 688877777778899999876 221 11122334456789999987
Q ss_pred CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe--ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV 355 (401)
Q Consensus 278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 355 (401)
++++++...++.|..+|. +++... +. .+...+.++++++++. ++++....+.|.+||. ++... .... .
T Consensus 157 ----g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~-~~~~-~ 226 (300)
T 2qc5_A 157 ----NALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEIS-EYDI-P 226 (300)
T ss_dssp ----SSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE-EEEC-S
T ss_pred ----CCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEE-EEEC-C
Confidence 677776666789999998 555433 32 2345688999999986 6776666778999998 33321 1211 1
Q ss_pred cCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
.+...+.+++++++|++.++...++.|..|+.
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 23456889999999997776666788999997
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=2.8e-11 Score=115.37 Aligned_cols=251 Identities=15% Similarity=0.131 Sum_probs=157.4
Q ss_pred CCeeEEEEeCCCCceEEEEecC----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc--
Q psy17342 119 SPVLSCCFAKFNPYLILGGTYS----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-- 192 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-- 192 (401)
..+..++|||++..++++.+.. ..|++||+.+++.... .+.. .....++| + +++.|+.++.+..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~--~k~~~~~W--s-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----PLKD--VKFSGISW--L-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----EEEE--EESCCCEE--E-TTTEEEEEESSCCC-
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----ccCC--ceeccEEE--e-CCCEEEEEEecCccc
Confidence 3578889999985555444333 4699999998874321 0111 11245678 8 9988888887743
Q ss_pred -----------EEEeeccCCCCCccccccccccccC-CccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCc
Q psy17342 193 -----------LCSWSLEMLSSPQETRDLQYNNKQT-KNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGN 256 (401)
Q Consensus 193 -----------i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~ 256 (401)
|.+|++.+.... ...+.. ... +......+.++ +++++|+.... ...|+++++..... .
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~--~~~v~~--~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~ 272 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQED--DRLVFG--AIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENA-P 272 (693)
T ss_dssp ------CCCCEEEEEETTSCGGG--CEEEES--CSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTC-C
T ss_pred ccccccCCCcEEEEEECCCCccc--ceEEEe--cCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCC-c
Confidence 888988652211 111111 111 23346788999 78888765432 35899999875432 2
Q ss_pred eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATV 331 (401)
Q Consensus 257 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~ 331 (401)
...+..+....... +.+.. +.+++....+ +.|..+|+.++.. ...+..|...+. .|+++++.++++.
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g-----~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKG-----STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp CEEEECSSSSCEEE-EEEET-----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred eEEEeCCCCceEEE-EeccC-----CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 34455555555444 55552 4555555543 5799999987654 355666666665 8899998666666
Q ss_pred ecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccCccceee
Q psy17342 332 EVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEVGIACLK 396 (401)
Q Consensus 332 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~~~~~l~ 396 (401)
..++ .|++||+..+. ... ........+..+.++++++.|+....+ +.|+.||+.+++.+.++
T Consensus 345 ~~~g~~~l~~~d~~g~~-~~~--l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR-VRE--VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EETTEEEEEEECTTSCE-EEE--ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred EECCeeEEEEEECCCCe-eEE--eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 6665 68888887432 222 223344567788888898877666554 78999999887655444
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=6e-11 Score=105.39 Aligned_cols=243 Identities=9% Similarity=0.059 Sum_probs=155.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--eE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--QI 143 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--~v 143 (401)
.....|+|+|+++ |.++.. .++.|++||.+++.... + ........ ++|+|++ ..|+++..++ .|
T Consensus 131 ~~P~~la~d~~g~-lyv~d~---------~~~~I~~id~~~g~~~~-~-~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQR---------DDPRVRLISVDDNKVTT-V-HPGFKGGK-PAVTKDK-QRVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECSTTE-EEEEET---------TTTEEEEEETTTTEEEE-E-EETCCBCB-CEECTTS-SEEEEEBSSTTCEE
T ss_pred CCceEEEEeCCCC-EEEEec---------CCCcEEEEECCCCEEEE-e-eccCCCCc-eeEecCC-CcEEEEecCCCceE
Confidence 4588999999997 444541 57899999998654432 2 22223334 9999987 5666665555 78
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc-ce
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-AV 222 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~v 222 (401)
.+++............ . .......+.++++ ++++..|+.+..++.|..||..... ........ ..+... ..
T Consensus 197 ~~~d~~~~~~~~~~g~-~-~~~~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~--~~g~~~~~P 268 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQ-L-GSTFSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLE--LSGSLGTNP 268 (409)
T ss_dssp EEEEGGGTTCEEEEEE-C-CTTSCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCC--EEEEEECC--CCSCCCCSS
T ss_pred EEEEcCCCceeEEeee-c-cchhcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCC--EEEEeccc--ccCCCCCCc
Confidence 8888766543111100 0 0113456678888 7844455557778899999987422 11110000 011111 11
Q ss_pred E-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC---------------CceeeeecCccCCCCCCCcEEE
Q psy17342 223 L-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE---------------GPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 223 ~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
. .++|+|.++.++++-..++.|+.|+.... ...+.++. .....++++|+ +++++
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d------G~lyv 338 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED------GNFYI 338 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT------CCEEE
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC------CCEEE
Confidence 3 89999435677777778899999987643 22332221 34678999998 67888
Q ss_pred EEe-CCCeEEEEEeeCCCceEEEeec---------------CCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342 287 TSS-YDWSVKLWNIKENKPVHSFNEF---------------RDYVMDVQWSPINPALFATVEVAGRVDLWNL 342 (401)
Q Consensus 287 s~~-~d~~i~iwd~~~~~~~~~~~~~---------------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~ 342 (401)
+-. .++.|+.||+.+++ +.++.++ -.....++++|++. ++++-..++.|+.+++
T Consensus 339 ad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 339 VDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred EeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence 877 78999999976665 4445443 23578999999975 7888888888988765
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=2.8e-10 Score=98.09 Aligned_cols=225 Identities=9% Similarity=-0.010 Sum_probs=143.2
Q ss_pred eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342 121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM 200 (401)
Q Consensus 121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 200 (401)
.....|+|++..+++++..++.|..||..++.... ......+.++++ .+++.++++. .+ .|.+||...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------~~~~~~v~~i~~--~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------HALPFMGSALAK--ISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------EECSSCEEEEEE--EETTEEEEEE-TT-EEEEEETTT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------EECCCcceEEEE--eCCCeEEEEE-CC-CEEEEECCC
Confidence 45788999876788888888999999998764321 112457899998 7888877764 44 488898764
Q ss_pred CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342 201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274 (401)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 274 (401)
.. ........ .......+..++++ ++++++++... .+.|+.++ . .+ ...+..+......++|+|
T Consensus 119 g~-~~~~~~~~---~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~---~~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 119 GV-LTLHAELE---SDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA-K-GK---VTKLFADISIPNSICFSP 188 (326)
T ss_dssp CC-EEEEECSS---TTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE-T-TE---EEEEEEEESSEEEEEECT
T ss_pred Cc-EEEEeeCC---CCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe-C-Cc---EEEeeCCCcccCCeEEcC
Confidence 22 11111110 00123468899999 78876654432 35677776 3 21 222322334567899999
Q ss_pred cCCCCCCCcEE-EEEeCCCeEEEEEee--CC-Cce--EEE---eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 275 AQGHIDFSHLY-LTSSYDWSVKLWNIK--EN-KPV--HSF---NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 275 ~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~-~~~--~~~---~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
+ ++.+ ++.+.++.|.+||+. ++ +.. ..+ ......+..+++.++|. ++++...++.|.+||. ++
T Consensus 189 d------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g 260 (326)
T 2ghs_A 189 D------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DG 260 (326)
T ss_dssp T------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TC
T ss_pred C------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CC
Confidence 8 5554 455557899999986 55 321 222 22345678899999996 6666656789999998 44
Q ss_pred CCCcceEEeecCCCCeEEEEec-CCCcEEEEEec
Q psy17342 346 TEVPATSAIVEGAPALSRVTWT-PNGTQLCVGDE 378 (401)
Q Consensus 346 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~ 378 (401)
+....+. .+...+++++|+ ++++.|++++.
T Consensus 261 ~~~~~i~---~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 NHIARYE---VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEEE---CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CEEEEEE---CCCCCcEEEEEecCCCCEEEEEec
Confidence 4333332 234568999998 88877755544
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=1.3e-10 Score=110.80 Aligned_cols=252 Identities=12% Similarity=0.067 Sum_probs=152.2
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC---
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--- 140 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--- 140 (401)
+...+..++|||||++||.+.. ..++....|++||+++++.+... +. ......++|+ |+..++++ +.+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~-----~~G~~~~~i~v~dl~tg~~~~~~-~~-~~k~~~~~Ws-Dg~~l~y~-~~~~~~ 197 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLS-----LAGSDWREIHLMDVESKQPLETP-LK-DVKFSGISWL-GNEGFFYS-SYDKPD 197 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEE-----CSSCCEEEEEEEETTTCSEEEEE-EE-EEESCCCEEE-TTTEEEEE-ESSCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEe-----cCCCceEEEEEEECCCCCCCccc-cC-CceeccEEEe-CCCEEEEE-EecCcc
Confidence 4457889999999999887662 11223468999999988754332 11 1113578899 88555544 444
Q ss_pred ----------CeEEEEECCCCCCCceeeccccccC-CCCcEEEEEEeecCCceEEEEEeC----CCcEEEeeccCCCCCc
Q psy17342 141 ----------GQIVLWDTRVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNAHNLISISN----DGRLCSWSLEMLSSPQ 205 (401)
Q Consensus 141 ----------g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~~~ 205 (401)
..|++|++.+.......- ..... |...+..+.| ++++++|+.... +..|.++|+.......
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v--~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLV--FGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEE--ESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cccccccCCCcEEEEEECCCCcccceEE--EecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 349999988765321110 11123 4455778888 999998765432 2478899987532111
Q ss_pred cccccccccccCCccceEEEEeccCCCCeE-EEEcCC---ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCC
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCED---GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 281 (401)
. .+.. +....... ++ +++..| +....+ +.|..+++..........+..|...+. .|+|+
T Consensus 274 ~--~l~~-----~~~~~~~~-~~-~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------ 336 (693)
T 3iuj_A 274 L--TVQG-----DLDADVSL-VD-NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------ 336 (693)
T ss_dssp E--EEEC-----SSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE------
T ss_pred E--EEeC-----CCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE------
Confidence 1 1111 22333333 45 344444 444433 678999987543222345556666554 78887
Q ss_pred CcEEEEEeC-CC--eEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCCC
Q psy17342 282 SHLYLTSSY-DW--SVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDT 346 (401)
Q Consensus 282 ~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~~ 346 (401)
++.|+.... ++ .|++||+.. .....+.. ..+.+..+.++|+++.++++.+.. +.|..||+.+++
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCEEEEEEEECCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 555555544 54 688898864 44444443 345677888898887655554422 789999998764
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=4.1e-11 Score=105.60 Aligned_cols=258 Identities=12% Similarity=0.051 Sum_probs=156.8
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe------cCCCeeEEEEeCCCCceEEEEec--CC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF------CQSPVLSCCFAKFNPYLILGGTY--SG 141 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~~--dg 141 (401)
.++++||++.|.++.+...+...+..++.|.++|..+.+.+.++... .......++|+|+++ +++.+.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCC
Confidence 89999999999888732111111113678999999988877666553 113456889999985 4554443 57
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
.|.+.|..+.+...... ..+ . ... .|+ ...+++.+.||++.+.+... .+...... .. ......
T Consensus 201 ~VsVID~~t~kvv~~I~----v~g----~--~~~--~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~-~~--~~v~~~ 264 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLD----VPD----C--YHI--FPASPTVFYMNCRDGSLARVDFAD-GETKVTNT-EV--FHTEDE 264 (426)
T ss_dssp EEEEEETTTTEEEEEEE----CCS----E--EEE--EEEETTEEEEEETTSSEEEEECCT-TCCEEEEC-CC--CSCTTS
T ss_pred eEEEEECCCCeEEEEEE----cCC----c--eee--ccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee-ee--eccCCC
Confidence 89999999877543221 111 1 111 122 24566777888888888732 22211000 00 000111
Q ss_pred ce-EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----------CCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342 221 AV-LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----------HEGPVVGLSSHRAQGHIDFSHLYLTSS 289 (401)
Q Consensus 221 ~v-~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~~~~~~l~s~~ 289 (401)
++ ..+.+. +++..++..+..+.+++.|........+..+.- .......++++|+. ..++++..
T Consensus 265 p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-----~rlyVa~~ 338 (426)
T 3c75_H 265 LLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-----DRIYLLVD 338 (426)
T ss_dssp CBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-----TEEEEEEE
T ss_pred ceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC-----CEEEEEec
Confidence 11 124556 677777777788999999986443211111110 01112236788873 34444432
Q ss_pred ---------CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcce
Q psy17342 290 ---------YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 290 ---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 351 (401)
.++.|.+.|..+.+.+.++.. .....+++|+|+++.++++.. .++.|.++|+.+.+.+..+
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 135799999999999999876 335789999999973445555 6999999999998765443
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=1.1e-09 Score=94.28 Aligned_cols=231 Identities=9% Similarity=-0.044 Sum_probs=147.0
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~ 147 (401)
.....|+|++..++.... .++.|..||.++++.. .......+.+++|.|++ +++++. . ..|.+||
T Consensus 51 ~egp~~~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~---~~~~~~~v~~i~~~~dg-~l~v~~-~-~gl~~~d 115 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI---------LERELHELHLASGRKT---VHALPFMGSALAKISDS-KQLIAS-D-DGLFLRD 115 (326)
T ss_dssp EEEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEE---EEECSSCEEEEEEEETT-EEEEEE-T-TEEEEEE
T ss_pred CcCCeEeCCCCEEEEEEC---------CCCEEEEEECCCCcEE---EEECCCcceEEEEeCCC-eEEEEE-C-CCEEEEE
Confidence 567889998766666663 5789999999865422 22345689999999987 555543 3 4599999
Q ss_pred CCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
..+++....... ........+.++++ ++++.++++...+ +...+|.+.. +.... +.. ......
T Consensus 116 ~~~g~~~~~~~~--~~~~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~---~~~-----~~~~~~ 182 (326)
T 2ghs_A 116 TATGVLTLHAEL--ESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAK-GKVTK---LFA-----DISIPN 182 (326)
T ss_dssp TTTCCEEEEECS--STTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEET-TEEEE---EEE-----EESSEE
T ss_pred CCCCcEEEEeeC--CCCCCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEeC-CcEEE---eeC-----CCcccC
Confidence 877654322110 00111246788988 8899876655421 2334444432 21111 111 223467
Q ss_pred EEEeccCCCCeEE-EEcCCceEEEEeCC--CC-CCC---ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342 224 SLAFPQNDVNNFV-VGCEDGNVYSACRH--GN-KAG---NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL 296 (401)
Q Consensus 224 ~~~~~~~~~~~l~-~~~~d~~i~~~~~~--~~-~~~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i 296 (401)
.++|+ ++++.++ +.+.++.|++|+.. .. ... ....+.........+.+.++ +.++++...++.|.+
T Consensus 183 ~i~~s-~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 183 SICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------GHIWNARWGEGAVDR 255 (326)
T ss_dssp EEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------SCEEEEEETTTEEEE
T ss_pred CeEEc-CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------CCEEEEEeCCCEEEE
Confidence 89999 7887664 44567899999975 22 111 12223333455678888887 677777766789999
Q ss_pred EEeeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEecC
Q psy17342 297 WNIKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEVA 334 (401)
Q Consensus 297 wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~d 334 (401)
||. +++.+..+..+...+.+++|+ |+++.++++...+
T Consensus 256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 998 677777777766779999998 8887555655544
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=6e-10 Score=95.11 Aligned_cols=231 Identities=10% Similarity=0.045 Sum_probs=147.5
Q ss_pred EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342 115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC 194 (401)
Q Consensus 115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 194 (401)
...........|+|++..+++++..++.|..|+.. +... . +..+...+..+++ .+++.++++...++.|.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~------~~~~~~~~~gl~~--d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-V------LLDATAFTNGNAV--DAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-E------EEESCSCEEEEEE--CTTSCEEEEETTTTEEE
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-E------EeCCCCccceeeE--CCCCCEEEEECCCCEEE
Confidence 33455677899999886688888888999999874 3321 1 2234567889998 88998776666667899
Q ss_pred EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE----EcC-------------CceEEEEeCCCCCCCce
Q psy17342 195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV----GCE-------------DGNVYSACRHGNKAGNV 257 (401)
Q Consensus 195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~~~~~ 257 (401)
+|+.. +........ . .......+..+++. ++++++++ |.. .+.|+.++....+.
T Consensus 111 ~~~~~--g~~~~~~~~-~--~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--- 181 (305)
T 3dr2_A 111 RSDAD--GQAHLLVGR-Y--AGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--- 181 (305)
T ss_dssp EECTT--SCEEEEECE-E--TTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---
T ss_pred EECCC--CCEEEEEec-c--CCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---
Confidence 99875 221111100 0 00112346778999 78887775 432 35678887753332
Q ss_pred eeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEeeCCCceEE---E-eecCCceEEEEECCCCCcE
Q psy17342 258 ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNIKENKPVHS---F-NEFRDYVMDVQWSPINPAL 327 (401)
Q Consensus 258 ~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~---~-~~~~~~v~~v~~~~~~~~~ 327 (401)
..+. .......++|+|+ ++.|+.+... +.|.+|++..+. +.. + .........++++++|. +
T Consensus 182 ~~~~-~~~~p~gl~~spd------g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-l 252 (305)
T 3dr2_A 182 QRMA-DLDHPNGLAFSPD------EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-L 252 (305)
T ss_dssp EEEE-EESSEEEEEECTT------SSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-E
T ss_pred EEEe-cCCCCcceEEcCC------CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-E
Confidence 2222 3345678999998 6766666554 789999997654 221 1 11233456789999997 4
Q ss_pred EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380 (401)
Q Consensus 328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 380 (401)
.++. .+ .|.+|+.. ++....+. ....+.+++|+++++.|+.++.++
T Consensus 253 wv~~-~~-gv~~~~~~-g~~~~~~~----~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 253 WSSS-GT-GVCVFDSD-GQLLGHIP----TPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EECC-SS-EEEEECTT-SCEEEEEE----CSSCCCEEEECTTSCEEEEEETTE
T ss_pred EEec-CC-cEEEECCC-CCEEEEEE----CCCceeEEEEeCCCCEEEEEcCCe
Confidence 4443 44 59999984 44333332 223588899999998888888765
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.31 E-value=6.6e-11 Score=102.58 Aligned_cols=267 Identities=6% Similarity=-0.083 Sum_probs=158.0
Q ss_pred EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCCeEEEEECCCCCCCceeecccccc-CCC
Q psy17342 98 VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSGQIVLWDTRVQKKTPVHRTPLSVM-AHT 167 (401)
Q Consensus 98 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~ 167 (401)
.|.++|..+++.+.++..+. .+ .+.++|+++.+.++.+ .++.|.+||..+.+.......+-... ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 89999999988887776663 34 7999999865554432 47889999999987653322100000 001
Q ss_pred CcEEEEEEeecCCceEEEEEeC--CCcEEE--eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342 168 HPVFCMSVIGTQNAHNLISISN--DGRLCS--WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN 243 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 243 (401)
.....+++ +|++++++++.. +..+.+ +|..+ ...+.... +..+.|.....+++.+.|+.
T Consensus 124 ~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~-----------~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 124 PRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS-----------CFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp CCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS-----------CCCCEEEETTEEECCCCTTS
T ss_pred CCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC-----------ceEEccCCCeEEEEEcCCCC
Confidence 22346777 999999998875 356888 88864 11111110 01123223344555666777
Q ss_pred EEEEeCCC-----CCCCce--eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEee----
Q psy17342 244 VYSACRHG-----NKAGNV--ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNE---- 310 (401)
Q Consensus 244 i~~~~~~~-----~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~---- 310 (401)
+.+.+... .+.... ..+.....+. . .+. +..++..+. +.+.+.|..... .+..+..
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~------~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY------PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETT------TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-ccc------CCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 77777653 110000 0011112232 2 333 344444445 899999986532 1222211
Q ss_pred ------cCCceEEEEECCCCCcEEEEEe---c-----CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE-EEE
Q psy17342 311 ------FRDYVMDVQWSPINPALFATVE---V-----AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ-LCV 375 (401)
Q Consensus 311 ------~~~~v~~v~~~~~~~~~l~~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~ 375 (401)
.......++++|+++.++++.. . ++.+.++|+.+.+.+..+... .....++|+|||+. +++
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEE
Confidence 0111122689999986665544 2 235669999998877666532 24788999999984 555
Q ss_pred Ee-cCCcEEEEEeccCccceeeeeecC
Q psy17342 376 GD-EKGAITMFDVGEVGIACLKFITSG 401 (401)
Q Consensus 376 ~~-~dg~v~iw~~~~~~~~~l~~~~~g 401 (401)
.. .++.|.++|+.+. +.+++++.|
T Consensus 332 ~~~~~~~VsVID~~t~--kvv~~I~vg 356 (368)
T 1mda_H 332 NSAGTEVLDIYDAASD--QDQSSVELD 356 (368)
T ss_dssp EETTTTEEEEEESSSC--EEEEECCCC
T ss_pred ccCCCCeEEEEECCCC--cEEEEEECC
Confidence 55 5899999999998 566766543
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.1e-09 Score=95.11 Aligned_cols=248 Identities=8% Similarity=-0.043 Sum_probs=145.2
Q ss_pred CCeeEEEEeCCCCceEEEEe--cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----CC
Q psy17342 119 SPVLSCCFAKFNPYLILGGT--YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----DG 191 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg 191 (401)
..+..++++|++ +++++.. .++.++||.+.++...+..........|-..+..+++ .+++.++++-.. ++
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~--d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKS--DGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEE--CSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEE--cCCCcEEEEcCCCCcCCCC
Confidence 678999999987 6777653 2343566666533221100000011245678999999 888876665543 57
Q ss_pred cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceeeecCC-----
Q psy17342 192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVECYEGH----- 263 (401)
Q Consensus 192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~----- 263 (401)
.|.+||+.+.. ....+.+... ...+...+..++++|.++..+++.. .++.|.+||....+ ....+.+|
T Consensus 94 ~i~~~d~~tg~-~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 94 KLVAWDTLNNQ-LSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAP 169 (343)
T ss_dssp EEEEEETTTTE-EEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSC
T ss_pred eEEEEECCCCe-EEEEEECChh-hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccc
Confidence 89999987522 1222222110 1112345678899833344445544 57889999986432 22222221
Q ss_pred ------------------------CCceeeeecCccCCCCCCCcEEEEEeCCC-eEEEEEeeC---CC-----ce--EEE
Q psy17342 264 ------------------------EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SVKLWNIKE---NK-----PV--HSF 308 (401)
Q Consensus 264 ------------------------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~---~~-----~~--~~~ 308 (401)
...+..|+++|+ ++.|+.+..++ .+..++... +. .. ...
T Consensus 170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d------g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE------NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT------SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred cccceeECCEEEEeccCCCceeceecccceeEeccC------CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence 123577899998 67777776655 444444321 10 00 022
Q ss_pred eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI 382 (401)
Q Consensus 309 ~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 382 (401)
.++.+....++++++|. ++++...++.|.+||..+++. ..+.. .........++|.++|+++++.+..+.+
T Consensus 244 ~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~-~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 244 YSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAY-KLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEE-EEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCE-EEEEE-CCceecCCeeEECCCCcEEEEeCccccc
Confidence 23344567899999996 888888899999999844432 12111 1223458899999999888877654433
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=7.2e-10 Score=96.06 Aligned_cols=263 Identities=8% Similarity=-0.057 Sum_probs=157.0
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec------CCCeeEEEEeCCCCceEEEEec--CC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFNPYLILGGTY--SG 141 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~g~~--dg 141 (401)
.+.++||++++.++.....+...+..++.|.+||..+++.+.++..+. ......++++|+++ +++.+.. +.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCC
Confidence 799999999999887432222222347899999999988877766541 13467899999985 4444443 45
Q ss_pred eEEE--EECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccC----CCCCcccccccccc
Q psy17342 142 QIVL--WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEM----LSSPQETRDLQYNN 214 (401)
Q Consensus 142 ~v~i--w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~~ 214 (401)
.|.+ +|..+ ... +...+ . ... .+++ ..+++.+.||.+.+.++.. .++...... ..
T Consensus 148 ~v~V~~iD~~t---v~~----i~v~~---~---~~~--~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~-- 209 (368)
T 1mda_H 148 AAGLSVPGASD---DQL----TKSAS---C---FHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GA-- 209 (368)
T ss_dssp EEEEEETTTEE---EEE----EECSS---C---CCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TT--
T ss_pred eEEEEEEchhh---ceE----EECCC---c---eEE--ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-ee--
Confidence 7888 88876 111 11111 0 111 1222 3455667788888888764 111110000 00
Q ss_pred ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------C---CCceeeeecCccCCCCCCCcE
Q psy17342 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------H---EGPVVGLSSHRAQGHIDFSHL 284 (401)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~---~~~v~~i~~~~~~~~~~~~~~ 284 (401)
......+. . . +++..++..+. +.+.+.|........+..+.- + ......+.++|+ ++.
T Consensus 210 i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------g~~ 277 (368)
T 1mda_H 210 QNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------TDG 277 (368)
T ss_dssp SCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------TTE
T ss_pred eeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------CCE
Confidence 00011222 2 4 45566666666 899999986433222222211 0 011122678887 444
Q ss_pred EEE-Ee---C-----CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcceEEe
Q psy17342 285 YLT-SS---Y-----DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPATSAI 354 (401)
Q Consensus 285 l~s-~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 354 (401)
+.. .. . ++.+.++|+.+.+.+.++.... ...+++|+|+++.++++.. .++.|.++|+.+.+.+..+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~-- 354 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE-- 354 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC--
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE--
Confidence 444 33 1 2356699999999988887643 6889999999986778877 69999999999987654442
Q ss_pred ecCCCCeEEEEecC
Q psy17342 355 VEGAPALSRVTWTP 368 (401)
Q Consensus 355 ~~~~~~v~~~~~s~ 368 (401)
-......+++.+
T Consensus 355 --vg~~P~~i~~~~ 366 (368)
T 1mda_H 355 --LDKGPESLSVQN 366 (368)
T ss_dssp --CCSCCCEEECCC
T ss_pred --CCCCCCEEEeec
Confidence 233344555543
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=9e-09 Score=89.80 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=139.5
Q ss_pred CCCCceEEEEecCCeEEEEECCCCCCCceeecccc---cc-C-CCCcEEEEEEeecCCceEEEEEeCC------CcEEEe
Q psy17342 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS---VM-A-HTHPVFCMSVIGTQNAHNLISISND------GRLCSW 196 (401)
Q Consensus 128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~---~~-~-~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~w 196 (401)
++...+++.|..++.|.++|+.+....+.....+. +. . -...-..+.. .|++ .++++..+ |.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC--GPDA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE--CSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE--CCCe-EEEEcCCCcCCCCCCeEEEE
Confidence 77767888888899999999976543333221110 10 0 1112334444 7888 66666555 689999
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------------------CCceEEEEeCCCCCCCce
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------------------EDGNVYSACRHGNKAGNV 257 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~~~~~~~~~~~~~ 257 (401)
|..+.. ......... ....--+.+.|+ ++++.+++.. ....|.+||+... +.+
T Consensus 170 D~~T~~-v~~~~~~~~----~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~ 241 (462)
T 2ece_A 170 DHYSFE-PLGKWEIDR----GDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRI 241 (462)
T ss_dssp CTTTCC-EEEECCSBC----TTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEE
T ss_pred ECCCCe-EEEEEccCC----CCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEe
Confidence 987632 222222211 011223457778 7888877774 4788999999853 344
Q ss_pred eeecCC-C-Cceeee--ecCccCCCCCCCcEEEEEe------CCCeEEEEEeeCCCc--eEEE--eec------------
Q psy17342 258 ECYEGH-E-GPVVGL--SSHRAQGHIDFSHLYLTSS------YDWSVKLWNIKENKP--VHSF--NEF------------ 311 (401)
Q Consensus 258 ~~~~~~-~-~~v~~i--~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~--~~~------------ 311 (401)
.++..- . .....+ +++|+ ++++..++ .+++|.+|....++. ++.+ ...
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pd------g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPT------KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTT------CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred eEEecCCCCCccceeEeeECCC------CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 454432 1 222334 45888 55555444 577888877665421 1111 110
Q ss_pred ----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE-EeecCC-------------CCeEEEEecCCCcEE
Q psy17342 312 ----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS-AIVEGA-------------PALSRVTWTPNGTQL 373 (401)
Q Consensus 312 ----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-------------~~v~~~~~s~~g~~l 373 (401)
......+.++|+++.++++.-..+.|.+||+.......... ...++. ..-..++++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 23467899999999777777778999999997443222221 222211 135779999999999
Q ss_pred EEEe
Q psy17342 374 CVGD 377 (401)
Q Consensus 374 ~~~~ 377 (401)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9888
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=4.8e-09 Score=89.46 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=143.2
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
.......|+|+++.|+.... .++.|..|+.. ++ ...+ ......+..+++.+++ +++++...++.|.+
T Consensus 45 ~~~egp~~~~~g~~l~~~d~---------~~~~i~~~~~~-g~-~~~~-~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDL---------VGRRVLGWRED-GT-VDVL-LDATAFTNGNAVDAQQ-RLVHCEHGRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEET---------TTTEEEEEETT-SC-EEEE-EESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEEC---------CCCEEEEEeCC-CC-EEEE-eCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence 44678899999986666662 68899999884 43 2222 2345678999999987 56666555578999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEE----EeC-------------CCcEEEeeccCCCCCcccc
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS----ISN-------------DGRLCSWSLEMLSSPQETR 208 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~ 208 (401)
|+.+ ++....... . .......+.++++ .++|..+++ +.. .+.|..+|.... ......
T Consensus 112 ~~~~-g~~~~~~~~-~-~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~~ 185 (305)
T 3dr2_A 112 SDAD-GQAHLLVGR-Y-AGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMA 185 (305)
T ss_dssp ECTT-SCEEEEECE-E-TTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEEE
T ss_pred ECCC-CCEEEEEec-c-CCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEEe
Confidence 9976 332211100 0 0011234567888 889987776 332 245666665431 111111
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCC
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDF 281 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~ 281 (401)
.......++|+ ++++.|+++... +.|++|++..........+ ....+....+.+.++
T Consensus 186 ---------~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~------ 249 (305)
T 3dr2_A 186 ---------DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG------ 249 (305)
T ss_dssp ---------EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT------
T ss_pred ---------cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC------
Confidence 11245778999 788877776554 6899998764321001111 112344567888887
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd 341 (401)
+++.++. .+ .|.+|+. .++.+..+..+. .+..++|+|+++.+ ..++.+ .+..++
T Consensus 250 G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L-~it~~~-~l~~~~ 303 (305)
T 3dr2_A 250 GWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRL-FITGGP-CLWMLP 303 (305)
T ss_dssp SCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEE-EEEETT-EEEEEE
T ss_pred CCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEE-EEEcCC-eEEEEE
Confidence 6655444 44 5999997 577777777654 58899999998744 444444 343333
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=1.9e-09 Score=101.95 Aligned_cols=279 Identities=12% Similarity=0.072 Sum_probs=160.1
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCC----------CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQS----------PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM 164 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~ 164 (401)
.++.|..+|.++++.+-++...... ....+++. + ..++.++.|+.|..+|..+++.......... .
T Consensus 85 ~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~-~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~ 160 (677)
T 1kb0_A 85 SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K-GKVYVGAWDGRLIALDAATGKEVWHQNTFEG-Q 160 (677)
T ss_dssp GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEETTTT-C
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--C-CEEEEEcCCCEEEEEECCCCCEEeeecCCcC-c
Confidence 4788899998887665443322110 01223332 3 4677778899999999998876533321100 0
Q ss_pred CCCCcEEE-EEEeecCCceEEEEEeC------CCcEEEeeccCCCCCccccccccccc----------------c-----
Q psy17342 165 AHTHPVFC-MSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQYNNK----------------Q----- 216 (401)
Q Consensus 165 ~~~~~v~~-~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~----------------~----- 216 (401)
.....+.+ ... .++ .++.++. ++.|..+|..++.. .-......... .
T Consensus 161 ~~~~~~~~~p~v---~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~ 235 (677)
T 1kb0_A 161 KGSLTITGAPRV---FKG-KVIIGNGGAEYGVRGYITAYDAETGER-KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (677)
T ss_dssp CSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CcCcccccCcEE---ECC-EEEEEecccccCCCCEEEEEECCCCcE-EEEeccCCCCccccccccccccccccccccCce
Confidence 00011111 111 133 3444432 68899999876332 11111110000 0
Q ss_pred ----CCccceEEEEeccCCCCeEEEEcCCc-------------------eEEEEeCCCCCCCceeeecC--CCCc-----
Q psy17342 217 ----TKNLAVLSLAFPQNDVNNFVVGCEDG-------------------NVYSACRHGNKAGNVECYEG--HEGP----- 266 (401)
Q Consensus 217 ----~~~~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~~~~~~~~~~~~~~~~~~--~~~~----- 266 (401)
+.......++++ ++...+++++.++ .|..+|..+.+ .+-.++. |...
T Consensus 236 ~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 236 WEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTST 312 (677)
T ss_dssp HHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCC
T ss_pred eEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccC
Confidence 011112356777 6778888887765 48888887443 3434332 2110
Q ss_pred --eeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-----------Cce---------------
Q psy17342 267 --VVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----------DYV--------------- 315 (401)
Q Consensus 267 --v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~v--------------- 315 (401)
..-+....+ + ..++.++.+|.++++|.++++.+..+.... .++
T Consensus 313 ~~p~l~~~~~d------G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 313 QPMILADIKIA------GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp SCCEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred CCcEEEecccC------CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 111111112 3 678889999999999999999887765321 011
Q ss_pred ---------EEEEECCCCCcEEEEEec-------------------------------------------CCEEEEEeCC
Q psy17342 316 ---------MDVQWSPINPALFATVEV-------------------------------------------AGRVDLWNLN 343 (401)
Q Consensus 316 ---------~~v~~~~~~~~~l~~~~~-------------------------------------------d~~i~iwd~~ 343 (401)
..++++|++. ++++... .|.|..||+.
T Consensus 387 P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~ 465 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV 465 (677)
T ss_dssp SCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT
T ss_pred cCcccccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC
Confidence 1468889887 5555432 2789999999
Q ss_pred CCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 344 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~ 398 (401)
+++.+..... ..++....+..++..+++++.||.+++||..+++ .+..+
T Consensus 466 tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~--~lw~~ 514 (677)
T 1kb0_A 466 AQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE--KLWEA 514 (677)
T ss_dssp TTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC--EEEEE
T ss_pred CCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc--eeeee
Confidence 9886655432 2334445566788889999999999999999984 44444
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=105.09 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=98.7
Q ss_pred CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC 259 (401)
Q Consensus 180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 259 (401)
++..+++++.||.|..||..++. ....... ..+.+..+. .++..+++++.|+.|+.||..+.+ .+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-~~W~~~~---------~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~--~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-IKWTLKE---------DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNE--GLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-EEEEEEC---------CCSCCCC------CCEEECTTTCCEEEC-----C--CSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-EEEEecC---------CCceecceE-cCCCEEEEeCCCCEEEEEECCCCc--eeee
Confidence 56789999999999999987632 2222111 123333334 456778888999999999986433 2333
Q ss_pred ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL 339 (401)
Q Consensus 260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~i 339 (401)
+..+..... ..+|... . +..+++++.|+.++.||.++|+.+.++..+. ...++|++. .+++++.|+.|+.
T Consensus 75 ~~~~~~~~~--~~sp~~~--~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a 144 (369)
T 2hz6_A 75 LPFTIPELV--QASPCRS--S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITM 144 (369)
T ss_dssp CSCCHHHHH--TTCSCC--------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEEC
T ss_pred eeccCcccc--ccCceEe--c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEE
Confidence 332211110 1122100 0 4567778889999999999999988877643 234567765 6778888999999
Q ss_pred EeCCCCCCCcceEEeecCCCCeEEEEecCCC---cEEEEEecCCcEEEEEeccCcc
Q psy17342 340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNG---TQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 340 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
||.++++.+..+.... .....++.+. ..+++++.||.|+.||..+++.
T Consensus 145 ~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 145 YDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EECCCCCEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 9999998776654321 1123334432 5677788999999999998853
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=2.5e-09 Score=92.87 Aligned_cols=233 Identities=7% Similarity=0.007 Sum_probs=142.7
Q ss_pred cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----cCCCeeEEEEeCCCCceEEEEe
Q psy17342 64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----CQSPVLSCCFAKFNPYLILGGT 138 (401)
Q Consensus 64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~ 138 (401)
+-..+..++++|+++.+++-. +. ....++.|.+||+++++.+..+.+. +...+..+++.|++..++++..
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~-g~----~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDN-GN----QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEEC-HH----HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred ceeEeeEEEEcCCCcEEEEcC-CC----CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 335799999999986444433 00 0001478999999877755555442 1235689999986545656655
Q ss_pred ---cCCeEEEEECCCCCCCceeeccccccCCCCcEE-EEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342 139 ---YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF-CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214 (401)
Q Consensus 139 ---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 214 (401)
.++.|.+||+.+++.... +..|..... ...+ ..++..+.+.+.++.++.|..
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~------~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~---------------- 195 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARV------LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL---------------- 195 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEE------CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC----------------
T ss_pred ccCCCCeEEEEECCCCCEEEE------ecCCCcccccccce--eECCEEEEeccCCCceeceec----------------
Confidence 678999999987653211 122211100 0222 346667777777877765531
Q ss_pred ccCCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCC---CCCC---cee--eecCCCCceeeeecCccCCCCCCCcEE
Q psy17342 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHG---NKAG---NVE--CYEGHEGPVVGLSSHRAQGHIDFSHLY 285 (401)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~---~~~~---~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~l 285 (401)
.+..++++ ++++.|+++...+ .++.++... .... ... ...++.+....+++.++ +.++
T Consensus 196 ------~~~gia~s-~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~------G~l~ 262 (343)
T 2qe8_A 196 ------GVNGIVLD-AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD------HNIY 262 (343)
T ss_dssp ------CEEEEEEC-TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT------CCEE
T ss_pred ------ccceeEec-cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC------CCEE
Confidence 35679999 7888888776555 666665321 0000 000 11234445677899887 7888
Q ss_pred EEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342 286 LTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDL 339 (401)
Q Consensus 286 ~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~i 339 (401)
++...++.|.+||..+++....... +...+.+++|.+++. ++++.+..+.+.+
T Consensus 263 va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 263 VGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCNQLHHSAP 316 (343)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEECCGGGSGG
T ss_pred EEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeCccccccc
Confidence 8888899999999855653322222 234688999999986 6666654444433
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.10 E-value=8.2e-08 Score=84.44 Aligned_cols=270 Identities=10% Similarity=0.006 Sum_probs=149.2
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCee-EEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL-SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~ 155 (401)
+..+++++ .++.|..+|.++++..-..... ..+. ..... + ..++.++.++.|..+|..+++...
T Consensus 103 ~~~v~v~~----------~~g~l~a~d~~tG~~~W~~~~~--~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 103 GGHVYIGS----------EKAQVYALNTSDGTVAWQTKVA--GEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp TTEEEEEE----------TTSEEEEEETTTCCEEEEEECS--SCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEc----------CCCEEEEEECCCCCEEEEEeCC--CceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEE
Confidence 44677777 6899999999988765444332 2221 12222 3 366777789999999998887543
Q ss_pred eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCe
Q psy17342 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNN 234 (401)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 234 (401)
........... ........ .+..++.++.++.+..+|..++. ..................+..+...| ..+..
T Consensus 168 ~~~~~~~~~~~-~~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (376)
T 3q7m_A 168 TVNLDMPSLSL-RGESAPTT----AFGAAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDRLSDVDTTPVVVNGV 241 (376)
T ss_dssp EEECCC------CCCCCCEE----ETTEEEECCTTTEEEEEETTTCC-EEEEEECCC-----------CCCCCCEEETTE
T ss_pred EEeCCCCceee-cCCCCcEE----ECCEEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCcccccccccCCCcEEECCE
Confidence 22210000000 00011122 23467778888999999987532 21111111000000000000011110 12467
Q ss_pred EEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCC
Q psy17342 235 FVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRD 313 (401)
Q Consensus 235 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~ 313 (401)
+++++.++.++.+|....+ .+.... ......+... +..+..++.++.+..+|..+++.+..... ...
T Consensus 242 v~~~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~~--------~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIVD--------GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp EEEECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEEE--------TTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred EEEEecCcEEEEEECCCCc--EEeecc--CCCCCCceEE--------CCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence 7888889999999987433 333322 2223333332 46677778899999999999988776652 122
Q ss_pred ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD 386 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~ 386 (401)
.+...... +. .++.++.+|.|..+|..+++.+.... ............ .+..|++++.+|.|+.|+
T Consensus 310 ~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQK--VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEE--CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEEe--cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 22222222 23 57778889999999999987654433 211111111122 255688899999999987
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=2.8e-09 Score=96.25 Aligned_cols=271 Identities=8% Similarity=-0.025 Sum_probs=168.5
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE-e-CCCCceEEEE---------------
Q psy17342 75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF-A-KFNPYLILGG--------------- 137 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~g--------------- 137 (401)
+||+++.... ..++.|.+.|+++.+....+.+........+++ . |++..+++++
T Consensus 99 ~DG~~lfVnd---------~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 99 YDGRFLFMND---------KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEE---------TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cCCCEEEEEc---------CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 4898988887 367889999999887766555554567889998 4 8775444442
Q ss_pred --ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc---------------EEEeeccC
Q psy17342 138 --TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR---------------LCSWSLEM 200 (401)
Q Consensus 138 --~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---------------i~~wd~~~ 200 (401)
-.++.+.+.|.++.+..... ...+ .-..++. ++++.++++++.+.. +.+.+...
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI----~Vgg---~pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQV----LVSG---NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEE----EESS---CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred ccccCceEEEEECCCCeEEEEE----EeCC---CccceEE--CCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 33567889998875533221 1112 2234556 788998888886642 23333211
Q ss_pred CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecCCCCceeeeecCccCCCC
Q psy17342 201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGHEGPVVGLSSHRAQGHI 279 (401)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~ 279 (401)
. ..+. ++++.... +.|.+.|....+... +..+.. .....++.++|+
T Consensus 241 ~-----------------------~~~v-~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD---- 287 (595)
T 1fwx_A 241 I-----------------------EKAI-AAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD---- 287 (595)
T ss_dssp H-----------------------HHHH-HHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT----
T ss_pred e-----------------------eEec-cCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC----
Confidence 0 0112 23444433 448999987522223 333332 234578999999
Q ss_pred CCCcEEEEEe-CCCeEEEEEeeCCC------------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC-
Q psy17342 280 DFSHLYLTSS-YDWSVKLWNIKENK------------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD- 345 (401)
Q Consensus 280 ~~~~~l~s~~-~d~~i~iwd~~~~~------------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~- 345 (401)
+++++.++ .+.+|.++|+.+.+ .+.+... ......++|+|+| +.+++.-.|++|.+||+...
T Consensus 288 --Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 288 --KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp --SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHH
T ss_pred --CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhh
Confidence 56555554 58899999998642 2333333 3457889999999 68888889999999999762
Q ss_pred ------CCCcceEEeecCCCCe-----EEEEecCCCcEEEEEec---CCc----------EEEEEeccCccceeeeeec
Q psy17342 346 ------TEVPATSAIVEGAPAL-----SRVTWTPNGTQLCVGDE---KGA----------ITMFDVGEVGIACLKFITS 400 (401)
Q Consensus 346 ------~~~~~~~~~~~~~~~v-----~~~~~s~~g~~l~~~~~---dg~----------v~iw~~~~~~~~~l~~~~~ 400 (401)
+..+.+....-|-.+- ..+.++|||++|+++.. |.. -.++|+..++++.+...++
T Consensus 364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 1122222222221111 12345899999998753 432 1899998877777766554
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=1.9e-08 Score=95.23 Aligned_cols=284 Identities=11% Similarity=0.038 Sum_probs=163.2
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cC---CCeeE-EEEeCCCCceEEEEec------CCeEEE
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQ---SPVLS-CCFAKFNPYLILGGTY------SGQIVL 145 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~---~~v~~-~~~~~~~~~~l~~g~~------dg~v~i 145 (401)
+..+++++ .|+.|..+|.++++.+-++... .. ..+.+ .... + ..++.++. +|.|+.
T Consensus 128 ~~~v~v~~----------~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a 194 (677)
T 1kb0_A 128 KGKVYVGA----------WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITA 194 (677)
T ss_dssp TTEEEEEC----------TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEc----------CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEE
Confidence 44566666 6899999999988876555432 10 11111 1111 3 34455443 689999
Q ss_pred EECCCCCCCceeeccccc-----------------c---------CCCCcEEEEEEeecCCceEEEEEeCCC--------
Q psy17342 146 WDTRVQKKTPVHRTPLSV-----------------M---------AHTHPVFCMSVIGTQNAHNLISISNDG-------- 191 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~-----------------~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg-------- 191 (401)
+|..+++..-.....-.. . ........+++ .+++..++.++.++
T Consensus 195 ~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 195 YDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHH
T ss_pred EECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCC
Confidence 999988764332210000 0 11111124566 77778888877664
Q ss_pred -----------cEEEeeccCCCCCccccccccccc--cCCccceEEEEeccCCC---CeEEEEcCCceEEEEeCCCCCCC
Q psy17342 192 -----------RLCSWSLEMLSSPQETRDLQYNNK--QTKNLAVLSLAFPQNDV---NNFVVGCEDGNVYSACRHGNKAG 255 (401)
Q Consensus 192 -----------~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~~~ 255 (401)
.|..+|.+++. ..-.++...... .........+... .++ ..++.++.+|.++++|..+.+
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~tG~-- 348 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRTNGK-- 348 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCC--
T ss_pred CccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECCCCC--
Confidence 47888877532 222222111000 0001112222222 355 678899999999999987543
Q ss_pred ceeeecCC-----------CCce------------------------eeeecCccCCCCCCCcEEEEEeC----------
Q psy17342 256 NVECYEGH-----------EGPV------------------------VGLSSHRAQGHIDFSHLYLTSSY---------- 290 (401)
Q Consensus 256 ~~~~~~~~-----------~~~v------------------------~~i~~~~~~~~~~~~~~l~s~~~---------- 290 (401)
.+..+... ..++ ..++++|. ..++++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~------~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ------TGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT------TTEEEEEEEECCCEEEECT
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC------CCEEEEeChhcceeeeccc
Confidence 33322211 0011 14566666 455555432
Q ss_pred ---------------------------------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEE
Q psy17342 291 ---------------------------------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV 337 (401)
Q Consensus 291 ---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i 337 (401)
.+.|..||+.+++.+.++.. ..++.+..+...+. +++.++.||.+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~-~v~~g~~dg~l 500 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGN-VVFQGTADGRL 500 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTT-EEEEECTTSEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCC-EEEEECCCCcE
Confidence 27899999999998888765 34445555666665 67778999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE-ec----------------CCcEEEEEecc
Q psy17342 338 DLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG-DE----------------KGAITMFDVGE 389 (401)
Q Consensus 338 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~----------------dg~v~iw~~~~ 389 (401)
++||.++++.+..+.. ++.....-+.|.++|+.+++. +. .+.+.+|.+..
T Consensus 501 ~a~D~~tG~~lw~~~~--~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 501 VAYHAATGEKLWEAPT--GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEEETTTCCEEEEEEC--SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EEEECCCCceeeeeeC--CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999999997766553 332223346667888755432 22 36788888874
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.08 E-value=1.7e-08 Score=95.71 Aligned_cols=283 Identities=10% Similarity=0.088 Sum_probs=160.9
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---------Ce-eEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---------PV-LSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
+..+++++ .++.|..+|.++++.+-++...... .+ ..+... + ..++.++.|+.|..+
T Consensus 70 ~g~vyv~~----------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-g~v~v~~~dg~l~Al 136 (689)
T 1yiq_A 70 DGVMYTTG----------PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--K-GKVYVGVLDGRLEAI 136 (689)
T ss_dssp TTEEEEEC----------GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T-TEEEEECTTSEEEEE
T ss_pred CCEEEEEc----------CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--C-CEEEEEccCCEEEEE
Confidence 44566666 5788999999888765444322110 00 112222 3 467778889999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEE-EEEeecCCceEEEEEe-----CCCcEEEeeccCCCCCcccccc-ccccc----
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFC-MSVIGTQNAHNLISIS-----NDGRLCSWSLEMLSSPQETRDL-QYNNK---- 215 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~-~~~~~---- 215 (401)
|..+++.......... ......+.+ -.+ .++..++..+ .+|.|..||.+++.. .-.... .....
T Consensus 137 Da~TG~~~W~~~~~~~-~~~~~~~~~sP~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRAD-HKRSYTITGAPRV---VNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AWRFYTVPGDPKLPPE 211 (689)
T ss_dssp ETTTCCEEEEEECCSC-TTSCCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCC
T ss_pred ECCCCCEeeeecCcCC-CCCCccccCCcEE---ECCEEEEEeCCCccCCCCEEEEEECCCCcE-EEEecccCCCcccccc
Confidence 9998876533321100 000011110 011 1343333322 367888888876332 111110 00000
Q ss_pred -----------c--------CCccceEEEEeccCCCCeEEEEcCCce-------------------EEEEeCCCCCCCce
Q psy17342 216 -----------Q--------TKNLAVLSLAFPQNDVNNFVVGCEDGN-------------------VYSACRHGNKAGNV 257 (401)
Q Consensus 216 -----------~--------~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~~~~~~~~~~~~ 257 (401)
. +.......++++ ++...+++++.++. |+.+|..+.+ .+
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~ 288 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YV 288 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EE
T ss_pred cccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--ee
Confidence 0 001111256777 67788888888764 8889987443 44
Q ss_pred eeecC--CCC-------ceeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-Cc----------
Q psy17342 258 ECYEG--HEG-------PVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-DY---------- 314 (401)
Q Consensus 258 ~~~~~--~~~-------~v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~---------- 314 (401)
-.++. |.. ++.-.....+ + ..++.++.+|.++++|.++++++....... ..
T Consensus 289 W~~~~~~~d~wd~~~~~~~~l~d~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~ 362 (689)
T 1yiq_A 289 WHYQTTPGDAWDYTATQHMILAELPID------GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR 362 (689)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred EeeecCCcccccccCCCCcEEEeeccC------CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC
Confidence 44442 211 1111111111 2 378889999999999999999875433211 00
Q ss_pred ----------------------------eEEEEECCCCCcEEEEEec---------------------------------
Q psy17342 315 ----------------------------VMDVQWSPINPALFATVEV--------------------------------- 333 (401)
Q Consensus 315 ----------------------------v~~v~~~~~~~~~l~~~~~--------------------------------- 333 (401)
-..++++|+.. ++++...
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 441 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPE 441 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCc
Confidence 11267888876 5554421
Q ss_pred ------------CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 334 ------------AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 334 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
+|.|..||+.+++.+..... ..+...-.+...+.++++++.||.|+.||.++++
T Consensus 442 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 442 GAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCCCCCcceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 37899999999886655432 2223334566678899999999999999999995
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=3.1e-07 Score=76.55 Aligned_cols=247 Identities=10% Similarity=-0.010 Sum_probs=147.5
Q ss_pred CcEEEEEeCcCCCCCc---eEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342 96 DGVCLIWNTKFKKTTP---EFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF 171 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~---~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (401)
.+.|+.++++...... ..... ....+..++|.+++..++++-..++.|..++......... .........
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~------~~~~~~~p~ 82 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI------IRQDLGSPE 82 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE------ECTTCCCEE
T ss_pred CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE------EECCCCCcc
Confidence 4688888887543211 11111 1345789999997766777766778999999976543211 112224568
Q ss_pred EEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---CceEEEE
Q psy17342 172 CMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DGNVYSA 247 (401)
Q Consensus 172 ~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~~ 247 (401)
.+++ .++ +..+++-...+.|.++++... ..... .. ........++++ +++..|+.+.. .+.|+.+
T Consensus 83 ~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~-~~-----~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 83 GIAL--DHLGRTIFWTDSQLDRIEVAKMDGT--QRRVL-FD-----TGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTSC--SCEEE-EC-----SSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEE
T ss_pred EEEE--EecCCeEEEEECCCCEEEEEEcCCC--CEEEE-EE-----CCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEE
Confidence 8888 775 455555566778999988631 11111 11 012356889999 65555444443 4688888
Q ss_pred eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcE
Q psy17342 248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327 (401)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 327 (401)
+........+ ..........++++|+. +.++++-...+.|.++|.........+.. ......++.. +..+
T Consensus 152 ~~dg~~~~~~--~~~~~~~P~gia~d~~~-----~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~l 221 (267)
T 1npe_A 152 HMDGTNRRIL--AQDNLGLPNGLTFDAFS-----SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNL 221 (267)
T ss_dssp ETTSCCCEEE--ECTTCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEE
T ss_pred ecCCCCcEEE--EECCCCCCcEEEEcCCC-----CEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEE
Confidence 8765332111 11223456789999863 45566666678999999865433333332 2344667664 3446
Q ss_pred EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT 371 (401)
Q Consensus 328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 371 (401)
+++....+.|..+|..+++.+..+. .+.......+++.|++.
T Consensus 222 yva~~~~~~v~~~d~~~g~~~~~i~--~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 222 YYTDWKTNSVIAMDLAISKEMDTFH--PHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC--CSSCCCCCCEEEECSCC
T ss_pred EEEECCCCeEEEEeCCCCCceEEEc--cccccccceeeecCccC
Confidence 7766677899999998876544432 12222356778877764
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.05 E-value=1.3e-07 Score=83.17 Aligned_cols=273 Identities=12% Similarity=0.035 Sum_probs=154.7
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec--------CCCeeEEEEeCCCCceEEEEecCCeEEEEEC
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--------QSPVLSCCFAKFNPYLILGGTYSGQIVLWDT 148 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~ 148 (401)
+..+++++ .++.|..+|.++++.+-+..... ...+.+.-.. ++ ..++.++.++.|..+|.
T Consensus 53 ~~~v~~~~----------~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~ 120 (376)
T 3q7m_A 53 DNVVYAAD----------RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNT 120 (376)
T ss_dssp TTEEEEEC----------TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEET
T ss_pred CCEEEEEc----------CCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEEC
Confidence 44677776 68899999998887654444321 1223222212 23 46667778999999999
Q ss_pred CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342 149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP 228 (401)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (401)
.+++....... .......... .+..++.++.++.|..+|..++. ............ ..........
T Consensus 121 ~tG~~~W~~~~------~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~--~~~~~~~~~~- 186 (376)
T 3q7m_A 121 SDGTVAWQTKV------AGEALSRPVV----SDGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSL--SLRGESAPTT- 186 (376)
T ss_dssp TTCCEEEEEEC------SSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCC-EEEEEECCC-------CCCCCCEE-
T ss_pred CCCCEEEEEeC------CCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCce--eecCCCCcEE-
Confidence 98875432221 1111111122 23467778889999999987532 221111111000 0000011111
Q ss_pred cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC--C-----ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE--G-----PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~-----~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
.+..+++++.++.++.+|....+ .+....... + .+..+...|... +..++.++.++.+..+|.++
T Consensus 187 --~~~~v~~g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 187 --AFGAAVVGGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVV----NGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp --ETTEEEECCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEE----TTEEEEECTTSCEEEEETTT
T ss_pred --ECCEEEEEcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEE----CCEEEEEecCcEEEEEECCC
Confidence 24567888889999999987433 333332111 0 011122222100 45677778899999999999
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
++.+..... .....+... +. .++.++.++.|..+|..+++...... ......+..... .+..|++++.+|.
T Consensus 259 G~~~w~~~~--~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~--~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 259 GQIMWKREL--GSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVTLWTQS--DLLHRLLTSPVL--YNGNLVVGDSEGY 329 (376)
T ss_dssp CCEEEEECC--CCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCEEEEEC--TTTTSCCCCCEE--ETTEEEEECTTSE
T ss_pred CcEEeeccC--CCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcEEEeec--ccCCCcccCCEE--ECCEEEEEeCCCe
Confidence 988766553 234444443 33 46667788999999999887543321 111112222222 3567888999999
Q ss_pred EEEEEeccCcc
Q psy17342 382 ITMFDVGEVGI 392 (401)
Q Consensus 382 v~iw~~~~~~~ 392 (401)
|+++|..++++
T Consensus 330 l~~~d~~tG~~ 340 (376)
T 3q7m_A 330 LHWINVEDGRF 340 (376)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 99999999853
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.6e-08 Score=87.13 Aligned_cols=266 Identities=12% Similarity=0.021 Sum_probs=154.0
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
..+.++...+++. |.+++ ++ |..+|. +++....+... ........+. + ..+..++.++.|..
T Consensus 60 ~~~~~~~~~~~g~-l~v~t-----------~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~-~~l~v~t~~~~l~~ 121 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGS-----------DK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--E-DILYVTSMDGHLYA 121 (330)
T ss_dssp EEEECCEETTTTE-ECCSS-----------CE-EEEECC-CGGGGGGSCC------CCEEEE--T-TEEEEECTTSEEEE
T ss_pred CcccceEEecCCc-EEEec-----------Cc-EEEECC-CCcEEEEEECC-CCcccCceEE--C-CEEEEEecCCEEEE
Confidence 4456777777774 44444 34 888886 34433222211 1112223333 2 35667778899999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
+|.. ++.... ...+...+.++.. .+++. +..++.++.|..+|.. +........ ....+.++
T Consensus 122 ~d~~-g~~~~~------~~~~~~~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-------~~~~~~~~ 182 (330)
T 3hxj_A 122 INTD-GTEKWR------FKTKKAIYATPIV--SEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-------NDAITSAA 182 (330)
T ss_dssp ECTT-SCEEEE------EECSSCCCSCCEE--CTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-------SSCCCSCC
T ss_pred EcCC-CCEEEE------EcCCCceeeeeEE--cCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-------CCCceeee
Confidence 9987 443211 1223333444554 44554 6667788899999876 222222111 12234555
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV 305 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 305 (401)
... .++. +.+++ +.++.+|.. ......+......+.++...++ + .+..++.++.+..+|. +++.+
T Consensus 183 ~~d-~~g~-l~v~t--~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~------g-~l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 183 SIG-KDGT-IYFGS--DKVYAINPD---GTEKWNFYAGYWTVTRPAISED------G-TIYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp EEC-TTCC-EEEES--SSEEEECTT---SCEEEEECCSSCCCSCCEECTT------S-CEEEEETTTEEEEECT-TSCEE
T ss_pred EEc-CCCE-EEEEe--CEEEEECCC---CcEEEEEccCCcceeceEECCC------C-eEEEEcCCCeEEEECC-CCCEe
Confidence 555 4444 55566 788888832 2234444444556777777765 3 4555666788888874 56666
Q ss_pred EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342 306 HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385 (401)
Q Consensus 306 ~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw 385 (401)
..+......+..+...+++. +..++.+|.|..+|. +++....+. .....+.++...++|. |..++.+|.+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~~~~---~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKWNFE---TGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEEEEE---CSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred EEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEEEEE---cCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 66665444445566666774 566777889999995 454433322 2244566777777776 5668899999988
Q ss_pred EeccC
Q psy17342 386 DVGEV 390 (401)
Q Consensus 386 ~~~~~ 390 (401)
..+..
T Consensus 321 ~~~~~ 325 (330)
T 3hxj_A 321 FNLEH 325 (330)
T ss_dssp EC---
T ss_pred ecccc
Confidence 87654
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=7.8e-08 Score=83.97 Aligned_cols=212 Identities=10% Similarity=0.146 Sum_probs=127.6
Q ss_pred CCceEEE-EEeCCCcEEEeeccCC-CCCccccccccccc--cCCccceEEEEeccCCCCeEEEEcCC------ceEEEEe
Q psy17342 179 QNAHNLI-SISNDGRLCSWSLEML-SSPQETRDLQYNNK--QTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSAC 248 (401)
Q Consensus 179 ~~~~~l~-s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~ 248 (401)
.++++|+ ++-.+++|.++|+.+. ..+.....+..... .........+... +++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 4555554 5556789999998642 22222211110000 0011234556677 677 66655444 6899999
Q ss_pred CCCCCCCceeeecCCCC---ceeeeecCccCCCCCCCcEEEEEe-------------------CCCeEEEEEeeCCCceE
Q psy17342 249 RHGNKAGNVECYEGHEG---PVVGLSSHRAQGHIDFSHLYLTSS-------------------YDWSVKLWNIKENKPVH 306 (401)
Q Consensus 249 ~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~ 306 (401)
..+. +.+..+..... .-+.+-|+|+ ++.+++.. .+.+|.+||+.+++.+.
T Consensus 171 ~~T~--~v~~~~~~~~~~~~~~Yd~~~~p~------~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 171 HYSF--EPLGKWEIDRGDQYLAYDFWWNLP------NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp TTTC--CEEEECCSBCTTCCCCCCEEEETT------TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCCC--eEEEEEccCCCCccccceEEECCC------CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 8743 35555542222 2345777888 67888774 36899999999888888
Q ss_pred EEeec-C-CceEEEEE--CCCCCcEEEEEe-----cCCEEEEEeCCCCCCCcceEEeecC-----------------CCC
Q psy17342 307 SFNEF-R-DYVMDVQW--SPINPALFATVE-----VAGRVDLWNLNLDTEVPATSAIVEG-----------------APA 360 (401)
Q Consensus 307 ~~~~~-~-~~v~~v~~--~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~-----------------~~~ 360 (401)
++... . .....+.| +|+++..++++- .+++|.+|....+............ ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 87752 1 23445555 999986666666 6778887766542211000000000 234
Q ss_pred eEEEEecCCCcEEEEEec-CCcEEEEEecc-Cccceeeeeec
Q psy17342 361 LSRVTWTPNGTQLCVGDE-KGAITMFDVGE-VGIACLKFITS 400 (401)
Q Consensus 361 v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~-~~~~~l~~~~~ 400 (401)
...+.+|+||++|.++.. .+.|.+||+.+ +..+.+..++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 678999999999987764 67899999963 33455555544
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=98.30 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=107.7
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 211 (401)
..+++++.||.|..||..+++...... . +.+.+..+ ..++..+++++.||.|..||..++.. .......
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~------~--~~~~s~p~--~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~ 78 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLK------E--DPVLQVPT--HVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFT 78 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE------C--CCSCCCC-------CCEEECTTTCCEEEC-----CC-SEECSCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEec------C--CCceecce--EcCCCEEEEeCCCCEEEEEECCCCce-eeeeecc
Confidence 578888899999999999887653321 1 23333333 35666788888999999999875332 1111111
Q ss_pred cccccCCccceE-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342 212 YNNKQTKNLAVL-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY 290 (401)
Q Consensus 212 ~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~ 290 (401)
. ...+. +..+ ..+..+++++.++.++.||..+.+ .+..+..+. ...++|. +..+++++.
T Consensus 79 ~------~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~--~~w~~~~~~----~~~~~p~------~~~v~~~~~ 138 (369)
T 2hz6_A 79 I------PELVQASPCR--SSDGILYMGKKQDIWYVIDLLTGE--KQQTLSSAF----ADSLSPS------TSLLYLGRT 138 (369)
T ss_dssp H------HHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------EEEEEE
T ss_pred C------ccccccCceE--ecCCEEEEEeCCCEEEEEECCCCc--EEEEecCCC----ccccccc------CCEEEEEec
Confidence 0 00110 0011 134567788889999999987443 344444332 2344554 678888888
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCC---CcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe-EEEEe
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN---PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL-SRVTW 366 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~ 366 (401)
|+.|+.||.++++.+..+..+. .....+.++. . .+++++.||.|+.||.++++.+.... ...++ ....+
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~----~~~pv~~~~~~ 211 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQN----YASPVVAFYVW 211 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEE----CSSCEEEEEEC
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEEec----CCCceEEEEEe
Confidence 9999999999999887765422 2233344431 3 35667889999999999987654432 23333 33455
Q ss_pred cCCCc
Q psy17342 367 TPNGT 371 (401)
Q Consensus 367 s~~g~ 371 (401)
+++|.
T Consensus 212 ~~dg~ 216 (369)
T 2hz6_A 212 QREGL 216 (369)
T ss_dssp TTSSC
T ss_pred cCCce
Confidence 56664
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.98 E-value=3.3e-08 Score=93.77 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
+|.|+.||+.+++.+.++..+. ++..-.+...+. +++.++.||.|+.||.++++.+..+.. ++.....-+.|..+|
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPA--ASGVMAAPVTYSVDG 529 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeC--CCCcccCceEEEECC
Confidence 3789999999999988887644 333334555565 788889999999999999997766543 322222336677888
Q ss_pred cEEE
Q psy17342 371 TQLC 374 (401)
Q Consensus 371 ~~l~ 374 (401)
+..+
T Consensus 530 ~qyv 533 (689)
T 1yiq_A 530 EQYV 533 (689)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7543
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=3.7e-06 Score=69.93 Aligned_cols=233 Identities=9% Similarity=0.020 Sum_probs=135.5
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
+.|+.++++..........+. +.........++| .+++ ..+++-..++.|..+++.... .... .. ...
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~--~~-----~~~ 78 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAF-LHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGE-PTTI--IR-----QDL 78 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEE-EEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCC-CEEE--EC-----TTC
T ss_pred CeEEEEEecCcccccccceee-ecCCCCcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCC-cEEE--EE-----CCC
Confidence 578888887654321000000 1111235678888 7754 455555567889999986421 1111 10 122
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEE
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLW 297 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iw 297 (401)
.....++++|..+..+++-...+.|.+++..+.... ............++++|.. +.++++... .+.|..+
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~~~~~~P~~i~vd~~~-----g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCEEEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEEECCCCCccEEEEeeCC-----CEEEEEECCCCCcEEEEE
Confidence 467889999334455556666789999998754321 1122222456789999863 455555433 3688888
Q ss_pred EeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342 298 NIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 298 d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 376 (401)
++. ++....+. ..-.....++++|++..++++-...+.|..+|+........ .........++.. .+..+++.
T Consensus 152 ~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~~~~~P~gi~~d-~~~lyva~ 225 (267)
T 1npe_A 152 HMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LEGLQYPFAVTSY-GKNLYYTD 225 (267)
T ss_dssp ETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EECCCSEEEEEEE-TTEEEEEE
T ss_pred ecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ecCCCCceEEEEe-CCEEEEEE
Confidence 875 33333332 22345789999998776777777788999999975332111 1222334566654 34444444
Q ss_pred ecCCcEEEEEeccCccceeeeee
Q psy17342 377 DEKGAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 377 ~~dg~v~iw~~~~~~~~~l~~~~ 399 (401)
...+.|.++|..++ +.++.++
T Consensus 226 ~~~~~v~~~d~~~g--~~~~~i~ 246 (267)
T 1npe_A 226 WKTNSVIAMDLAIS--KEMDTFH 246 (267)
T ss_dssp TTTTEEEEEETTTT--EEEEEEC
T ss_pred CCCCeEEEEeCCCC--CceEEEc
Confidence 45688999999887 3445443
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.91 E-value=1.3e-08 Score=87.72 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=147.3
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
.....++ .+.+++ .++.|..|| .+++....... ....+.++...+++ .+..++.+ |..+|. +
T Consensus 25 ~~~d~~g-~l~v~t----------~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~ 86 (330)
T 3hxj_A 25 PILAKNG-TIYLGS----------SNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDG--TIYFGSDK--VYAINP-D 86 (330)
T ss_dssp CEECTTS-CEECSS----------TTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTT--EECCSSCE--EEEECC-C
T ss_pred ceEccCC-eEEEEc----------CCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCC--cEEEecCc--EEEECC-C
Confidence 3444455 455555 577888888 65553322111 12234566665544 45555544 888875 3
Q ss_pred CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN 230 (401)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 230 (401)
++... .............+ . +..+..++.++.|..+|.. +........ ....+.++... +
T Consensus 87 g~~~~------~~~~~~~~~~~~~~--~--~~~l~v~t~~~~l~~~d~~--g~~~~~~~~-------~~~~~~~~~~~-~ 146 (330)
T 3hxj_A 87 GTEKW------RFDTKKAIVSDFTI--F--EDILYVTSMDGHLYAINTD--GTEKWRFKT-------KKAIYATPIVS-E 146 (330)
T ss_dssp GGGGG------GSCC-----CCEEE--E--TTEEEEECTTSEEEEECTT--SCEEEEEEC-------SSCCCSCCEEC-T
T ss_pred CcEEE------EEECCCCcccCceE--E--CCEEEEEecCCEEEEEcCC--CCEEEEEcC-------CCceeeeeEEc-C
Confidence 33221 11112222223333 2 4567778888999999876 222111111 12233444444 3
Q ss_pred CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342 231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE 310 (401)
Q Consensus 231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 310 (401)
+ ..+++++.++.++.+|.. .. ....+......+.++...++ +.++ .++ +.|..+| .+++.+..+..
T Consensus 147 ~-g~l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~d~~------g~l~-v~t--~~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 147 D-GTIYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASIGKD------GTIY-FGS--DKVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp T-SCEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECTT------CCEE-EES--SSEEEEC-TTSCEEEEECC
T ss_pred C-CEEEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEEcCC------CEEE-EEe--CEEEEEC-CCCcEEEEEcc
Confidence 4 457778888999999986 22 34444444455666666554 4444 444 7899999 77777777666
Q ss_pred cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
....+.++...+++. +..++.++.|..+|. ++.....+. .....+..+...+++ .|..++.+|.|..+|. ++
T Consensus 213 ~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 213 GYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWRFK---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp SSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEEEE---CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TS
T ss_pred CCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEEee---CCCCccccceEcCCC-eEEEecCCCCEEEECC-CC
Confidence 556688888898885 455666788888874 344332222 222233445555555 4667888888999985 44
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=3e-07 Score=83.18 Aligned_cols=194 Identities=8% Similarity=-0.001 Sum_probs=126.0
Q ss_pred CCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEEc-----------------
Q psy17342 179 QNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVGC----------------- 239 (401)
Q Consensus 179 ~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~----------------- 239 (401)
++|++++.... +++|.+.|+.+.. ....++++ ....+..+++.. |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~-~~~ii~ip------~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK-CDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE-EEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce-EeeEEeCC------CCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 36777766655 5569999998632 22222332 223566777754 6788887774
Q ss_pred -CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--------------------------
Q psy17342 240 -EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-------------------------- 292 (401)
Q Consensus 240 -~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-------------------------- 292 (401)
.++.+.+.|.... +...++.--. ....++++|+ +.++++.+.+.
T Consensus 172 ~~~~~vtvID~~t~--~v~~qI~Vgg-~pd~~~~spd------Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 172 NYVNVFTAVDADKW--EVAWQVLVSG-NLDNCDADYE------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GEEEEEEEEETTTT--EEEEEEEESS-CCCCEEECSS------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccCceEEEEECCCC--eEEEEEEeCC-CccceEECCC------CCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 3456788888743 3344433211 3356677777 56766666442
Q ss_pred ------------eEEEEEeeC--CCc-eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--------Cc
Q psy17342 293 ------------SVKLWNIKE--NKP-VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--------VP 349 (401)
Q Consensus 293 ------------~i~iwd~~~--~~~-~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~ 349 (401)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++..+.+|.++|+.+.+. ..
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 477777776 444 455654 345678999999998888888899999999986421 01
Q ss_pred ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 350 ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 350 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.......-......++|+|+|...++..-|+.|.+||+.+
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1111223345678999999995555667899999999987
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=2e-07 Score=88.14 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=155.7
Q ss_pred CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---------Ce-eEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---------PV-LSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
+..+++++ .++.|..+|.++++.+-++...... .+ ..+++. + ..++.++.++.|..+
T Consensus 66 ~g~vyv~~----------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~v~~~dg~l~al 132 (668)
T 1kv9_A 66 DGVIYTSM----------SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G-DKVYVGTLDGRLIAL 132 (668)
T ss_dssp TTEEEEEE----------GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B-TEEEEECTTSEEEEE
T ss_pred CCEEEEEC----------CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--C-CEEEEEcCCCEEEEE
Confidence 34566666 5889999999888765443322110 00 112332 3 366777789999999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEE-EEEeecCCceEEEEEeC------CCcEEEeeccCCCCCcccccccc-ccc---
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFC-MSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQY-NNK--- 215 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~-~~~--- 215 (401)
|..+++........- ......+.+ ..+ .++ .++.+.. +|.|..+|.+++.. .-...... ...
T Consensus 133 D~~tG~~~W~~~~~~--~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTD--PAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL-AWRFYTVPGDPALPY 205 (668)
T ss_dssp ETTTCCEEEEEECSC--TTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCC
T ss_pred ECCCCCEeeeeccCC--CCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE-EEEecccCCCCCccc
Confidence 999887653322100 000001110 011 133 3444332 57888888876321 11111100 000
Q ss_pred ------------c--------CCccceEEEEeccCCCCeEEEEcCCce-------------------EEEEeCCCCCCCc
Q psy17342 216 ------------Q--------TKNLAVLSLAFPQNDVNNFVVGCEDGN-------------------VYSACRHGNKAGN 256 (401)
Q Consensus 216 ------------~--------~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~~~~~~~~~~~ 256 (401)
. ........+++. ++...+++++.++. |+.+|..+.+ .
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~--~ 282 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK--L 282 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--E
T ss_pred cccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc--e
Confidence 0 001111246777 66778888887764 8888887443 3
Q ss_pred eeeecC--CC-------CceeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC------------
Q psy17342 257 VECYEG--HE-------GPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR------------ 312 (401)
Q Consensus 257 ~~~~~~--~~-------~~v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------ 312 (401)
+-.++. |. .+.....+..+ + ..++.++.+|.++++|..+++.+.......
T Consensus 283 ~W~~~~~~~~~wd~~~~~~~~~~d~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 283 AWHYQVTPGDSWDFTATQQITLAELNID------GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred eeEeecCCCccccccCCCCcEEEEeccC------CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 444432 22 11111111112 3 368888999999999999999875443211
Q ss_pred Cce------------------------EEEEECCCCCcEEEEE-----------------------------------ec
Q psy17342 313 DYV------------------------MDVQWSPINPALFATV-----------------------------------EV 333 (401)
Q Consensus 313 ~~v------------------------~~v~~~~~~~~~l~~~-----------------------------------~~ 333 (401)
.++ ..++++|+...+++.. ..
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 000 1256777765333211 12
Q ss_pred CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 334 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
+|.|..||+.+++.+..... ........+...+.++++++.||.|+.||.++++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 47899999999886655432 2223333445578889999999999999999985
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=5.4e-06 Score=80.43 Aligned_cols=287 Identities=12% Similarity=0.115 Sum_probs=170.3
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEE
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g 137 (401)
...|.++...++| .|..|+ .+ -|.+|+..++... .+... ....|.++...+++ .|..|
T Consensus 262 ~~~i~~i~~d~~g-~lWigt----------~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWig 326 (795)
T 4a2l_A 262 SNYIRSLAMDSQN-RLWIGT----------FN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQG--GMWLG 326 (795)
T ss_dssp CSBEEEEEECTTS-CEEEEE----------SS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTS--CEEEE
T ss_pred CCeEEEEEEcCCC-CEEEEe----------CC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCc--CEEEE
Confidence 3669999998888 466677 34 5888887754321 11100 13579999888766 35556
Q ss_pred ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc-ccc-
Q psy17342 138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY-NNK- 215 (401)
Q Consensus 138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~- 215 (401)
+.++-|..|+.................-....|.++.. .+++. |..|+.++-|..|+..... ........ ...
T Consensus 327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~--d~~g~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE--DKDKN-LWIGTNDGGLNLYNPITQR--FTSYTLQEDESAR 401 (795)
T ss_dssp ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE--CTTSC-EEEEESSSCEEEECTTTCC--EEEECCC------
T ss_pred ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE--CCCCC-EEEEECCCCeEEEcCCCCc--EEEEecCCCCccc
Confidence 67777999987655432111110001113456899887 66665 5567777789999876411 11111000 000
Q ss_pred cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-----CCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-----GHEGPVVGLSSHRAQGHIDFSHLYLTSSY 290 (401)
Q Consensus 216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~~~~l~s~~~ 290 (401)
......|.++... +++..|.+|+.++-+..++..... ...+. .....|.++...+. +.+.+ |+.
T Consensus 402 ~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~------g~lwi-gt~ 470 (795)
T 4a2l_A 402 GIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDGE------GNLWL-GTL 470 (795)
T ss_dssp CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECSS------SCEEE-EES
T ss_pred CCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECCC------CCEEE-Eec
Confidence 0123568899887 566647788887789999876432 22222 12456888887765 45444 444
Q ss_pred CCeEEEEEeeCCCceEEEee-------cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE----eecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNE-------FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA----IVEGAP 359 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~ 359 (401)
+-+.+||..+++.. .+.. ....|.++...++|. +.+ |+. +-|..||..+... .+.. ......
T Consensus 471 -~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~ 543 (795)
T 4a2l_A 471 -SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKL 543 (795)
T ss_dssp -SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGS
T ss_pred -CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCC
Confidence 45888887665432 2221 235789999999986 444 334 4588888776432 1110 001234
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.|.++...++|.+.++ +..| |..||..+++
T Consensus 544 ~i~~i~~d~~g~lWig-T~~G-l~~~d~~~~~ 573 (795)
T 4a2l_A 544 FTNCIYEASNGIIWVG-TREG-FYCFNEKDKQ 573 (795)
T ss_dssp CEEEEEECTTSCEEEE-ESSC-EEEEETTTTE
T ss_pred eeEEEEECCCCCEEEE-eCCC-ceeECCCCCc
Confidence 6889999999886554 4444 8888877654
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=6.1e-06 Score=80.06 Aligned_cols=290 Identities=9% Similarity=0.012 Sum_probs=168.7
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~ 147 (401)
|.++...+++. |.+++ .++.|..|+.++++............|.++...+++ . +..|+.++-|..||
T Consensus 175 i~~i~~d~~g~-lwigt----------~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lwigt~~~Gl~~~~ 241 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYIGT----------STDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT-R-IWVATEGAGLFLIN 241 (795)
T ss_dssp CEEEEEEETTE-EEEEE----------SSSCEEEEETTTCCEEECC----CCCEEEEEEEETT-E-EEEEEBSSCEEEEE
T ss_pred eEEEEECCCCC-EEEEE----------CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC-C-EEEEECCCCeEEEe
Confidence 88888888774 55566 355688899875543211111124578888887755 3 44455554588999
Q ss_pred CCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc-ccccCCccceEEE
Q psy17342 148 TRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY-NNKQTKNLAVLSL 225 (401)
Q Consensus 148 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 225 (401)
..+.+......... ........|.++.. .+++.+.+ |+.+ -|.+|+..... ........ .........|.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i 315 (795)
T 4a2l_A 242 PKTKEIKNYLHSPSNPKSISSNYIRSLAM--DSQNRLWI-GTFN-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSI 315 (795)
T ss_dssp TTTTEEEEECCCTTCTTSCSCSBEEEEEE--CTTSCEEE-EESS-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEE
T ss_pred CCCCeEEEeecCCCCccccCCCeEEEEEE--cCCCCEEE-EeCC-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEE
Confidence 87654321111000 00112457899887 66666444 4445 58888865311 11110000 0011134578999
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
... +++ .|.+|+.++-|..++..... ...+.. ....|.++...++ +. |..|+.++-|..||
T Consensus 316 ~~D-~~g-~lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~------g~-lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 316 FMD-SQG-GMWLGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKD------KN-LWIGTNDGGLNLYN 383 (795)
T ss_dssp EEC-TTS-CEEEEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTT------SC-EEEEESSSCEEEEC
T ss_pred EEe-CCc-CEEEEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCC------CC-EEEEECCCCeEEEc
Confidence 887 444 56778887888888765332 112211 2345888887765 44 55577777899999
Q ss_pred eeCCCceEEEe--------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecC
Q psy17342 299 IKENKPVHSFN--------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTP 368 (401)
Q Consensus 299 ~~~~~~~~~~~--------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~ 368 (401)
..+++...... .....|.++...+++. +|..|+.++-|..||..+++.. .+... ......|.++...+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECS
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECC
Confidence 87654322211 1135689999888885 4666777778999998875421 11100 01235689999988
Q ss_pred CCcEEEEEecCCcEEEEEeccCcc
Q psy17342 369 NGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 369 ~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
+|.+.+. +.+| |.+|+..+++.
T Consensus 462 ~g~lwig-t~~G-l~~~~~~~~~~ 483 (795)
T 4a2l_A 462 EGNLWLG-TLSA-LVRFNPEQRSF 483 (795)
T ss_dssp SSCEEEE-ESSC-EEEEETTTTEE
T ss_pred CCCEEEE-ecCc-eeEEeCCCCeE
Confidence 8886554 4455 88999877643
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=3.6e-06 Score=68.96 Aligned_cols=198 Identities=11% Similarity=-0.006 Sum_probs=129.4
Q ss_pred CeeEEEEeCCCCceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 120 PVLSCCFAKFNPYLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 120 ~v~~~~~~~~~~~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
....++|+|++ .+.++.+. ++.|.++|..+++...... +..+ .....+++ . .+...++.-.++.+.++|
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~~-~fgeGi~~--~-g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK----MDDS-YFGEGLTL--L-NEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE----CCTT-CCEEEEEE--E-TTEEEEEETTCSEEEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe----cCCC-cceEEEEE--e-CCEEEEEEecCCEEEEEE
Confidence 46789999975 55544432 5799999999987653322 1122 22235555 3 334555556688999999
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCC---ceeeeec
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEG---PVVGLSS 272 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~---~v~~i~~ 272 (401)
..+... ...+... .. .-.. ++ ++++.++++..++.|.++|..+.+ .+..+.. +.. .++.+.+
T Consensus 93 ~~t~~v-~~~i~~g------~~-~g~g--lt-~Dg~~l~vs~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 93 RRTLSN-IKNFTHQ------MK-DGWG--LA-TDGKILYGSDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp TTTTEE-EEEEECC------SS-SCCE--EE-ECSSSEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEE
T ss_pred CCCCcE-EEEEECC------CC-CeEE--EE-ECCCEEEEECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEE
Confidence 875321 2222111 01 1122 34 467777777788999999987543 3444432 112 2456676
Q ss_pred CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------CceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342 273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYVMDVQWSPINPALFATVEVAGRVDL 339 (401)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v~~v~~~~~~~~~l~~~~~d~~i~i 339 (401)
. + +.+++....++.|.+.|..+++.+..+.... ...+.++|+|+++.+++++...+.+..
T Consensus 160 ~-d------g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 160 I-N------GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp E-T------TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred E-C------CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 6 3 6666666668899999999999998887421 356899999999889999988999999
Q ss_pred EeCCCCC
Q psy17342 340 WNLNLDT 346 (401)
Q Consensus 340 wd~~~~~ 346 (401)
.++....
T Consensus 233 i~l~~~~ 239 (266)
T 2iwa_A 233 IKLHLVR 239 (266)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 9987643
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.76 E-value=4.8e-06 Score=71.40 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=140.1
Q ss_pred eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------------------cCCCeeEEEEeC
Q psy17342 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------------------CQSPVLSCCFAK 128 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------------------~~~~v~~~~~~~ 128 (401)
..+++|++++..+.++. .++.|..|+..++. ...+... ....+..+++.+
T Consensus 21 p~~i~~d~~g~~l~v~~----------~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSV----------QDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp CCCEECCTTCSSEEEEC----------TTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred ceEEEEcCCCCEEEEEc----------CCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 56788999987777776 68899999887543 2222211 013578899997
Q ss_pred CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeC-----------------C
Q psy17342 129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISN-----------------D 190 (401)
Q Consensus 129 ~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~-----------------d 190 (401)
++.+++++ ...+.|..+|..++........ . ..........+++ .+ ++...++-.. +
T Consensus 90 ~~g~l~v~-d~~~~i~~~d~~~g~~~~~~~~-~-~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 90 QNNQLYIV-DCYYHLSVVGSEGGHATQLATS-V-DGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTTEEEEE-ETTTEEEEECTTCEECEEEESE-E-TTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCCcEEEE-ECCCCEEEEeCCCCEEEEeccc-C-CCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCC
Confidence 33244444 3445588888765432211110 0 0011234677888 78 7876665432 3
Q ss_pred CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342 191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269 (401)
Q Consensus 191 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (401)
+.|..+|..... ... +.. .......++++ ++++.|+++ +.++.|+.+++..........+....+ ...
T Consensus 165 g~v~~~d~~~~~--~~~--~~~-----~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g 233 (322)
T 2fp8_A 165 GRLIKYDPSTKE--TTL--LLK-----ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN 233 (322)
T ss_dssp EEEEEEETTTTE--EEE--EEE-----EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred ceEEEEeCCCCE--EEE--ecc-----CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence 567777764311 010 000 11234568899 788765555 667899999987532212222221223 677
Q ss_pred eecCccCCCCCCCcEEEEEeC----------CCeEEEEEeeCCCceEEEeecC----CceEEEEECCCCCcEEEEEecCC
Q psy17342 270 LSSHRAQGHIDFSHLYLTSSY----------DWSVKLWNIKENKPVHSFNEFR----DYVMDVQWSPINPALFATVEVAG 335 (401)
Q Consensus 270 i~~~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~v~~~~~~~~~l~~~~~d~ 335 (401)
+++.++ ++++++... .+.|..+|. .++.+..+.... ..+..+++ .++ .++++....+
T Consensus 234 i~~d~~------G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~ 304 (322)
T 2fp8_A 234 IKRNAD------GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHG 304 (322)
T ss_dssp EEECTT------SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCS
T ss_pred eEECCC------CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCC
Confidence 888887 677666554 466888886 477776666432 34666666 345 3666666778
Q ss_pred EEEEEeCCCC
Q psy17342 336 RVDLWNLNLD 345 (401)
Q Consensus 336 ~i~iwd~~~~ 345 (401)
.|..+++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 8999987643
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=1.9e-06 Score=70.59 Aligned_cols=199 Identities=9% Similarity=-0.009 Sum_probs=128.6
Q ss_pred cEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 169 PVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 169 ~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
....+.| ++++.++++.+. ++.|.++|+.+.. ......+.. + .....+++. .+...++.-.++.+.+
T Consensus 22 f~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~-v~~~i~l~~-----~-~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 22 FTQGLVY--AENDTLFESTGLYGRSSVRQVALQTGK-VENIHKMDD-----S-YFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CEEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCC-EEEEEECCT-----T-CCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred CcccEEE--eCCCeEEEECCCCCCCEEEEEECCCCC-EEEEEecCC-----C-cceEEEEEe--CCEEEEEEecCCEEEE
Confidence 3578988 777765555543 5789999998632 222222211 1 122245554 2345555667889999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEEC
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWS 321 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~ 321 (401)
+|.... +.+..+..... ....++++ +..++.+..+++|.++|..+.+.+.++.... ..++.+.|.
T Consensus 91 iD~~t~--~v~~~i~~g~~--~g~glt~D------g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 91 YDRRTL--SNIKNFTHQMK--DGWGLATD------GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp EETTTT--EEEEEEECCSS--SCCEEEEC------SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EECCCC--cEEEEEECCCC--CeEEEEEC------CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 998743 34555542211 12334455 3444445568899999999988888876422 136788888
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------cCCCCeEEEEecCCCcE-EEEEecCCcEEEEEeccC
Q psy17342 322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------EGAPALSRVTWTPNGTQ-LCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~-l~~~~~dg~v~iw~~~~~ 390 (401)
++. +++....++.|.+.|..+++.+..+...- ......+.++|+|+++. ++++...+.|++.++...
T Consensus 161 -dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 664 77777678899999999988766665320 01135689999999865 556667788999998765
No 247
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.76 E-value=5.2e-05 Score=65.60 Aligned_cols=247 Identities=9% Similarity=-0.035 Sum_probs=150.0
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
+..+|.+..++ .+|+.+. ...|+..++.... ..........+..++|.+.+..++++-...+.|..
T Consensus 34 d~~~C~~~~~~-~~ll~~~-----------~~~I~~i~~~g~~--~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-----------RIDIRQVLPHRSE--YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR 99 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-----------BSCEEEECTTSCC--EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCcccccccC-ceeEeec-----------ccceEEEeCCCCe--eEEeecCCCceEEEEEeccccEEEEEeccCCceEE
Confidence 44567776663 3555444 4668888887432 22333445668999999866566667667788999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (401)
++++........ .........+++ .+ .+.++++-...+.|.+.+++.. ..... +. ........
T Consensus 100 ~~~~g~~~~~~~------~~~~~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~--~~~~l-~~-----~~l~~P~~ 163 (349)
T 3v64_C 100 ANLNGSNVEEVV------STGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGA--HRKVL-LW-----QSLEKPRA 163 (349)
T ss_dssp EETTSCSCEEEE------CSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSC--SCEEE-EC-----TTCSCEEE
T ss_pred EecCCCCceEEE------eCCCCCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCC--ceEEE-Ee-----CCCCCcce
Confidence 998876532211 111223456777 54 4555666666788999887631 11111 11 12245688
Q ss_pred EEeccCCCCeEEEEcCC-ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342 225 LAFPQNDVNNFVVGCED-GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 303 (401)
++++|..+.++++-... +.|+.+++.+.... ......-...+.++++|.. +.++++-...+.|..+|+....
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~~~~~PnGla~d~~~-----~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIADTHLFWPNGLTIDYAG-----RRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESCCSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCS
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEEECCCCCcceEEEeCCC-----CEEEEEECCCCEEEEEeCCCCc
Confidence 99994455555555555 78999988754321 1112223446789999874 5666666667889999986433
Q ss_pred ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342 304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 351 (401)
....+........++++. .+ .++++-...+.|..++..+++....+
T Consensus 237 ~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 237 RKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp CEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence 332233334456788883 34 47777777888998886666554443
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=8.3e-06 Score=78.96 Aligned_cols=290 Identities=11% Similarity=0.080 Sum_probs=167.3
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-------E------ecCCCeeEEEEeCCCC
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-------F------FCQSPVLSCCFAKFNP 131 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-------~------~~~~~v~~~~~~~~~~ 131 (401)
...|.++...++| .|..++ ..+-|.++|..++....... . -....|.++...+++
T Consensus 257 ~~~i~~i~~d~~g-~lWigt----------~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g- 324 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-KLWIAT----------ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN- 324 (781)
T ss_dssp CCCEEEEEECTTS-EEEEEE----------SSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-
T ss_pred CceEEEEEECCCC-CEEEEe----------CCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-
Confidence 3568899888887 466677 34678888987644322111 0 023578888887766
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccc---cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPL---SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR 208 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 208 (401)
.|..|+.++-|..++............+. ........|.++.. .+++. |..|+.++-|..++..... ....
T Consensus 325 -~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~ 398 (781)
T 3v9f_A 325 -NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGK-LWIGTDGGGINVFENGKRV--AIYN 398 (781)
T ss_dssp -CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSC-EEEEEBSSCEEEEETTEEE--EECC
T ss_pred -CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCC-EEEEeCCCcEEEEECCCCe--EEEc
Confidence 35566667779999887654322110000 01123456888887 66554 5566666678888865311 1111
Q ss_pred ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CCCCceeeeecCccCCCCCCCcEE
Q psy17342 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GHEGPVVGLSSHRAQGHIDFSHLY 285 (401)
Q Consensus 209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~l 285 (401)
. .. .......|.++... +++ .|.+|+.++-+..++..... ...+. .....|.++...+. +. |
T Consensus 399 ~-~~--~~~~~~~v~~i~~d-~~g-~lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~~------g~-l 463 (781)
T 3v9f_A 399 K-EN--RELLSNSVLCSLKD-SEG-NLWFGTYLGNISYYNTRLKK---FQIIELEKNELLDVRVFYEDKN------KK-I 463 (781)
T ss_dssp --------CCCSBEEEEEEC-TTS-CEEEEETTEEEEEECSSSCE---EEECCSTTTCCCCEEEEEECTT------SE-E
T ss_pred c-CC--CCCCCcceEEEEEC-CCC-CEEEEeccCCEEEEcCCCCc---EEEeccCCCCCCeEEEEEECCC------CC-E
Confidence 0 00 01134568888876 444 56667777778888875332 22222 13456888887765 44 4
Q ss_pred EEEeCCCeEEEEEeeCCCceEEEeec-----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-cCCC
Q psy17342 286 LTSSYDWSVKLWNIKENKPVHSFNEF-----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-EGAP 359 (401)
Q Consensus 286 ~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~ 359 (401)
..|+. +-+..||..+++........ ...|.++...++|. +. .|+.++-|..||..+.+. ..+.... -...
T Consensus 464 wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~ 539 (781)
T 3v9f_A 464 WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLV-RKFNQYEGFCSN 539 (781)
T ss_dssp EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEE-EEECTTTTCSCS
T ss_pred EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeE-EEccCCCCCCCC
Confidence 44554 56888998766544332221 35789999999986 44 444433477788765431 1111000 0134
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
.|.++...++|.+.+ |+.+|.|..||..+++.
T Consensus 540 ~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 540 TINQIYRSSKGQMWL-ATGEGLVCFPSARNFDY 571 (781)
T ss_dssp CEEEEEECTTSCEEE-EETTEEEEESCTTTCCC
T ss_pred eeEEEEECCCCCEEE-EECCCceEEECCCCCcE
Confidence 688999988888655 44477548888776643
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=4.1e-05 Score=67.23 Aligned_cols=230 Identities=8% Similarity=-0.060 Sum_probs=140.9
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
...|+..++..... .........+..++|.+.+..++++-...+.|..++.+........ .........+++
T Consensus 95 ~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~------~~~~~~p~glav 166 (386)
T 3v65_B 95 RIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV------STGLESPGGLAV 166 (386)
T ss_dssp BSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE------CSSCSCCCCEEE
T ss_pred CccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE------eCCCCCccEEEE
Confidence 56788888875432 2333445678999999866567777667788999998765432111 111123356666
Q ss_pred eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeCCCCC
Q psy17342 176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACRHGNK 253 (401)
Q Consensus 176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~ 253 (401)
.+ .+.++++-...+.|.+.++.. ...... + .........+++.|..+.++++-... +.|+.+++.+..
T Consensus 167 --d~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l-~-----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 167 --DWVHDKLYWTDSGTSRIEVANLDG--AHRKVL-L-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp --ETTTTEEEEEETTTTEEEECBTTS--CSCEEE-E-----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred --EeCCCeEEEEcCCCCeEEEEeCCC--CceEEe-e-----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 54 455556666677888888763 111111 1 11224578899994445455554455 789988887543
Q ss_pred CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~ 333 (401)
. .......-...+.|+++|.. +.++++-+..+.|..+|+........+........++++. .+ .++++-..
T Consensus 237 ~--~~~~~~~~~~PnGlavd~~~-----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~ 307 (386)
T 3v65_B 237 R--RIIADTHLFWPNGLTIDYAG-----RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWH 307 (386)
T ss_dssp C--EEEECSSCSCEEEEEEEGGG-----TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred c--EEEEECCCCCeeeEEEeCCC-----CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCC
Confidence 2 11222223446789999874 5666666667889999986433333333334456788883 33 47777777
Q ss_pred CCEEEEEeCCCCCCCcceE
Q psy17342 334 AGRVDLWNLNLDTEVPATS 352 (401)
Q Consensus 334 d~~i~iwd~~~~~~~~~~~ 352 (401)
.+.|..++..+++....+.
T Consensus 308 ~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCcceEEEc
Confidence 8899999976666554443
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.73 E-value=5.6e-06 Score=67.39 Aligned_cols=211 Identities=11% Similarity=0.128 Sum_probs=133.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
..+..++|+|++..|+++.- .++.|...|.. ++....+.+......-.+++.+++ .++++.-.++.+.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d---------~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTIN---------KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEE---------TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEEC---------CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEE
Confidence 56999999999888887773 68899999988 776666655444678889998866 56566556778999
Q ss_pred EECCCCCCCc-eeec--cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc---cccCCc
Q psy17342 146 WDTRVQKKTP-VHRT--PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN---NKQTKN 219 (401)
Q Consensus 146 w~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~~~~ 219 (401)
+++....... .... ++.....+.....++| .+.++.|+++.+.....+|.++...... .+..... ......
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~--d~~~~~L~va~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAY--SRQDHTFWFFKEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEE--ETTTTEEEEEEESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEE--eCCCCEEEEEECcCCceEEEEcccccCC-ceeeecchhhcccccc
Confidence 9887654311 1111 1111234566789999 8888777777776666777765211110 1111100 001123
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCC------CceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHE------GPVVGLSSHRAQGHIDFSHLYLTSSYDW 292 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~------~~v~~i~~~~~~~~~~~~~~l~s~~~d~ 292 (401)
..+..++++|..+.+++....+..+..+|..+... ....+. +.. ..-..|++.|+ ++++++ ++.+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~~~qpEGia~d~~------G~lyIv-sE~n 244 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHNIKQAEGVAMDAS------GNIYIV-SEPN 244 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSCCCSEEEEEECTT------CCEEEE-ETTT
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccccCCCCeeEECCC------CCEEEE-cCCc
Confidence 45789999988888888888899999999875421 112222 111 24578899987 665555 6556
Q ss_pred eEEEEE
Q psy17342 293 SVKLWN 298 (401)
Q Consensus 293 ~i~iwd 298 (401)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555553
No 251
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=2.6e-06 Score=81.87 Aligned_cols=251 Identities=12% Similarity=0.031 Sum_probs=131.3
Q ss_pred CeeEEEEe-CCCCceEEEEecCC----eEEEEECCCC-CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---
Q psy17342 120 PVLSCCFA-KFNPYLILGGTYSG----QIVLWDTRVQ-KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND--- 190 (401)
Q Consensus 120 ~v~~~~~~-~~~~~~l~~g~~dg----~v~iw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--- 190 (401)
.+...+|| |++..++++.+.+| .|+++|+.++ +.... .+. .....++| +|+++.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~---~~~~~~~W--spDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVS---GTNGEIVW--GPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEE---EECSCCEE--CSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----ccc---CceeeEEE--ecCCCEEEEEEECCCC
Confidence 57789999 99855555544444 4999999887 52210 001 11235778 8999877777655
Q ss_pred --CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCc--eeeecCC
Q psy17342 191 --GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGN--VECYEGH 263 (401)
Q Consensus 191 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~--~~~~~~~ 263 (401)
..|.++++.+... ........ ........+.|+ +++++|+..+ ....|+++|+....... .......
T Consensus 245 ~~~~v~~~~lgt~~~-~~~lv~~~----~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 245 RENKVWRHVMGKLQS-EDVCLYEE----HNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp CEEEEEEEETTSCGG-GCEEEEEC----CCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred CCCEEEEEECCCCch-hcEEEEec----CCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence 2466677654211 11111110 122235678899 8898887665 34468888887542222 2222333
Q ss_pred CCceeeeecCccCCCCCCCcEEEEEeCC--C--eEEEEEeeCCCceEE-EeecCC--ceEEEEECCCCCcEEEEEecCCE
Q psy17342 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYD--W--SVKLWNIKENKPVHS-FNEFRD--YVMDVQWSPINPALFATVEVAGR 336 (401)
Q Consensus 264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d--~--~i~iwd~~~~~~~~~-~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~ 336 (401)
.....++.|+.. +.+++....+ + .|..+|+.++..... +..+.. .+..+.+. +..++++...++.
T Consensus 319 ~~~~~s~~~~~g------~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 319 KGVRYDVQMHGT------SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGL 390 (751)
T ss_dssp TTCCEEEEEETT------TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred CCceEEEeeeeC------CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence 445555554432 3455555444 3 566666654222222 333333 34555554 4457888888886
Q ss_pred EE--EEeC-------CCCCCCcceEEeecCCCCeEEEEe----cCCCc-EEEEEecC---CcEEEEEeccCccceee
Q psy17342 337 VD--LWNL-------NLDTEVPATSAIVEGAPALSRVTW----TPNGT-QLCVGDEK---GAITMFDVGEVGIACLK 396 (401)
Q Consensus 337 i~--iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----s~~g~-~l~~~~~d---g~v~iw~~~~~~~~~l~ 396 (401)
.+ ++|+ ..++....+ .......+..+.+ ++++. ++++.+.. ..++.+|+.+++.+.++
T Consensus 391 ~~l~~~dl~~~~~~~~~g~~~~~l--~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 391 TRIWTMMADSQDGVFKAGTGLREV--VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp EEEEEEECCTTTSCCCTTTCCEEC--CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE
T ss_pred EEEEEEecccccccccCCccceEE--CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 55 4554 222202222 1222222334433 34654 44444332 45777777776544443
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.72 E-value=5e-06 Score=71.28 Aligned_cols=250 Identities=6% Similarity=-0.038 Sum_probs=138.8
Q ss_pred CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc-c------------cccCCCCcEEEEEEeecC-CceEE
Q psy17342 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-L------------SVMAHTHPVFCMSVIGTQ-NAHNL 184 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~-~------------~~~~~~~~v~~~~~~~~~-~~~~l 184 (401)
....+++|.+++ ++++++..++.|..|+..+.......... . ...........+++ .+ ++. |
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNNQ-L 94 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTTE-E
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE--cCCCCc-E
Confidence 346778899876 66777888899999988764432111000 0 00001235788888 76 555 4
Q ss_pred EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeEEEEcC-----------------CceEEE
Q psy17342 185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCE-----------------DGNVYS 246 (401)
Q Consensus 185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~-----------------d~~i~~ 246 (401)
+.+...+.+..+|..... . ..+.... ..........+++. + ++++.++-.. ++.|+.
T Consensus 95 ~v~d~~~~i~~~d~~~g~-~-~~~~~~~--~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGH-A-TQLATSV--DGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEETTTEEEEECTTCEE-C-EEEESEE--TTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred EEEECCCCEEEEeCCCCE-E-EEecccC--CCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 444444557777765311 1 1110000 00012346778888 6 7766555432 367888
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCC--ceEEEeecCCceEEEEECCC
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENK--PVHSFNEFRDYVMDVQWSPI 323 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~ 323 (401)
++..... ...+.........++++|+ ++.| ++-...+.|.+|++.... ....+....+ ...+++.++
T Consensus 170 ~d~~~~~---~~~~~~~~~~p~gia~~~d------g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 170 YDPSTKE---TTLLLKELHVPGGAEVSAD------SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239 (322)
T ss_dssp EETTTTE---EEEEEEEESCCCEEEECTT------SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred EeCCCCE---EEEeccCCccCcceEECCC------CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence 8875332 2222111233467899988 5644 444557899999987532 1222222233 788999999
Q ss_pred CCcEEEEEec----------CCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 324 NPALFATVEV----------AGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 324 ~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
|. ++++... .+.|..+|.. ++.+..+....+. -..++.+++ .+++++++....+.|.++++...
T Consensus 240 G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 240 GH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CC-EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 97 5555443 4668888764 4433333221111 234666666 46666666667788999998754
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=1.9e-06 Score=69.80 Aligned_cols=193 Identities=10% Similarity=0.055 Sum_probs=121.5
Q ss_pred cEEEEEEeecCCceEEEEEeCCC--cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342 169 PVFCMSVIGTQNAHNLISISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 169 ~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
-...+.| + ++.++.+.+.+| .|+.+|+.++. ......+.. ..---.++.. .....++.-.++.+.+
T Consensus 44 ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l~~------~~FgeGit~~--g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 44 FTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGK-TLQQIELGK------RYFGEGISDW--KDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCC-EEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred ccceEEE--E-CCEEEEECCCCCCceEEEEECCCCc-EEEEEecCC------ccceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 3477888 5 667777777776 89999998733 222222221 1111223433 2344455556889999
Q ss_pred EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEEC
Q psy17342 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWS 321 (401)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~ 321 (401)
+|..+. +.+.++.... ....+.++ +..|+.+..+++|.++|..+.+.+.++.... ..++.+.|.
T Consensus 112 ~D~~t~--~~~~ti~~~~---eG~glt~d------g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 112 WNIRNL--RQVRSFNYDG---EGWGLTHN------DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EETTTC--CEEEEEECSS---CCCCEEEC------SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EECccC--cEEEEEECCC---CceEEecC------CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 998743 4566665322 22333344 3445544557889999999998888876521 335667886
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe---------ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAI---------VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
+|. +++..-.++.|.+.|.++++.+..+... .......+.++|+|+++.|++.+..- =++|.+
T Consensus 181 -~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev 252 (262)
T 3nol_A 181 -DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEI 252 (262)
T ss_dssp -TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred -CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEE
Confidence 664 7777767889999999998876665531 01124578999999988877776543 334444
No 254
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.67 E-value=9e-05 Score=63.17 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=135.0
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
...|+..++........ .........++| .+. +..+++-...+.|..+++...........+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------~~~~~~p~g~~~--d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~----~~~ 75 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD 75 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------ECSCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSS
T ss_pred CCeEEEEECCCcceEeh-------hcCCCceEEEEE--EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE----eCC
Confidence 45689999887654322 123345778988 665 4555565667889999886411000000010 001
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKLW 297 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~iw 297 (401)
......+++.+..++++++-...+.|.++++.+... .............+++.|.. +.++++.... +.|...
T Consensus 76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~P~~iavdp~~-----g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--EEEEECCCCCcceEEeCCCC-----CEEEEEccCCCCeEEEE
Confidence 124567888733455556667788999999875432 11222233456889999864 4555554433 678888
Q ss_pred EeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342 298 NIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 298 d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 376 (401)
++. ++....+. ..-...+.++++|++..++++-...+.|..+|+... ....+............+++. .+..+++-
T Consensus 149 ~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 149 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred cCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence 774 44444442 223467899999987767777777789999999743 222322111112345677775 45666666
Q ss_pred ecCCcEEEEEeccCc
Q psy17342 377 DEKGAITMFDVGEVG 391 (401)
Q Consensus 377 ~~dg~v~iw~~~~~~ 391 (401)
...+.|..++..+++
T Consensus 226 ~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 226 IINEAIFSANRLTGS 240 (316)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEeCCCCc
Confidence 667889998876663
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=5.8e-06 Score=76.56 Aligned_cols=104 Identities=11% Similarity=-0.035 Sum_probs=70.2
Q ss_pred cEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------Cce--------------------------EEEEECCC
Q psy17342 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYV--------------------------MDVQWSPI 323 (401)
Q Consensus 283 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~v~~~~~ 323 (401)
..++.++.+|.+.++|..+++.+..+.... .++ ..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 357778889999999999998887765321 111 23567887
Q ss_pred CCcEEEEEe-------------------------------------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342 324 NPALFATVE-------------------------------------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW 366 (401)
Q Consensus 324 ~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 366 (401)
.. +++... .+|.|..||+.+++.+..... . ..+....+
T Consensus 397 ~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~--~~~~~~~~ 471 (571)
T 2ad6_A 397 SR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--K--FAAWGGTL 471 (571)
T ss_dssp TT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--S--SCCCSBCE
T ss_pred CC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--C--CCccceeE
Confidence 76 444432 357899999998886655432 2 12222222
Q ss_pred cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 367 TPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 367 s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
...+..+++++.||.|+.||.++++
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCC
T ss_pred EECCCEEEEEcCCCeEEEEECCCCC
Confidence 3346677789999999999999985
No 256
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=0.00011 Score=62.61 Aligned_cols=231 Identities=9% Similarity=-0.095 Sum_probs=141.1
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
...|+..+++...............+..++|.+.+..+..+-...+.|..++.+........ ....-.....+++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-----~~~~l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-----VVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-----EEECCSCCCEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-----EcCCCCCccEEEE
Confidence 57899999986543333444334567799999866567777667788999998766321110 0111123456777
Q ss_pred eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc--CCceEEEEeCCCC
Q psy17342 176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSACRHGN 252 (401)
Q Consensus 176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~ 252 (401)
.+ .+..+++-...+.|.++++.. ...... . .........+++. +.+..|+.+. ..+.|+..++.+.
T Consensus 87 --d~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l-~-----~~~~~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 87 --DWLGEKLYWTDSETNRIEVSNLDG--SLRKVL-F-----WQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTS--CSCEEE-E-----CSSCSSEEEEEEE-GGGTEEEEEECSSSCEEEEEETTSC
T ss_pred --EcCCCeEEEEECCCCEEEEEECCC--CcEEEE-E-----eCCCCCccEEEEe-CCCCEEEEEecCCCCEEEEEEcCCC
Confidence 54 555666666778899998863 111111 1 0123456889998 4444444443 3678998888754
Q ss_pred CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe
Q psy17342 253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE 332 (401)
Q Consensus 253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~ 332 (401)
... ......-...+.++++|.. +.++++-+..+.|..+|+.................++++..+ .++.+-.
T Consensus 156 ~~~--~~~~~~l~~Pnglavd~~~-----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~ 226 (318)
T 3sov_A 156 SRF--IIINSEIYWPNGLTLDYEE-----QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW 226 (318)
T ss_dssp SCE--EEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEET
T ss_pred CeE--EEEECCCCCccEEEEeccC-----CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEec
Confidence 321 1122223345789999864 556666666789999998643322222323445677887543 4777777
Q ss_pred cCCEEEEEeCCCCCCCcce
Q psy17342 333 VAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 333 ~d~~i~iwd~~~~~~~~~~ 351 (401)
..+.|..++..+++....+
T Consensus 227 ~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 227 STHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCeEEEEECCCCCceEEE
Confidence 7889999998777654443
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.62 E-value=2.5e-06 Score=80.70 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=53.7
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
++.|..||+.+++.+.+...+. +.....+...+. +++.++.|+.|+.||.++++.+..+.. +....-.-+.+..+|
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~--~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEA--QSGIVAAPMTFELAG 512 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEecC--CCCcccCceEEEECC
Confidence 4889999999999888876533 333333444554 677789999999999999987666543 221111223445577
Q ss_pred c-EEEEEe
Q psy17342 371 T-QLCVGD 377 (401)
Q Consensus 371 ~-~l~~~~ 377 (401)
+ ++++++
T Consensus 513 ~~yva~~~ 520 (668)
T 1kv9_A 513 RQYVAIMA 520 (668)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 444443
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=8.6e-06 Score=65.94 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=120.9
Q ss_pred cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEe
Q psy17342 169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC 248 (401)
Q Consensus 169 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~ 248 (401)
-...+.| . ++.++.+.+.+|.|+.+|+.+....... +.. ..---.+++. .....++.-.++.+.++|
T Consensus 56 ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 56 FTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLASD--GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp CEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred ccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence 3467887 4 5678888889999999999874433332 322 1111224443 345555566788999999
Q ss_pred CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEECCC
Q psy17342 249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPI 323 (401)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~ 323 (401)
..+ .+.+.++... ..-..++ ++ +..|+.+..+++|.++|..+.+.+.++.... ..++.+.|. +
T Consensus 123 ~~T--l~~~~ti~~~-~eGwGLt--~D------g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 123 GMP--PQRERTTRYS-GEGWGLC--YW------NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp TTT--TEEEEEEECS-SCCCCEE--EE------TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCc--CcEEEEEeCC-CceeEEe--cC------CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 874 3455565532 2223344 44 4555555668999999999998888876422 245677887 6
Q ss_pred CCcEEEEEecCCEEEEEeCCCCCCCcceEEe----------ecCCCCeEEEEecCCCcEEEEEec
Q psy17342 324 NPALFATVEVAGRVDLWNLNLDTEVPATSAI----------VEGAPALSRVTWTPNGTQLCVGDE 378 (401)
Q Consensus 324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~ 378 (401)
|. +++..-.++.|.+.|.++++.+..+... .......+.++++|+++.|++.+.
T Consensus 191 G~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 64 7777767889999999998876665532 012246789999998766666554
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.61 E-value=2.9e-06 Score=80.26 Aligned_cols=253 Identities=11% Similarity=0.039 Sum_probs=133.9
Q ss_pred eEEEEeCCCCceEEEEecCC-----------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-
Q psy17342 122 LSCCFAKFNPYLILGGTYSG-----------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN- 189 (401)
Q Consensus 122 ~~~~~~~~~~~~l~~g~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~- 189 (401)
.++++.|.+.++++.|+.+. .+.+||..+++-......+ ..+.....++++ ..++..++.|+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---~~~~~~~~~~~~--~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---TKHDMFCPGISM--DGNGQIVVTGGND 263 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---CSCCCSSCEEEE--CTTSCEEEECSSS
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---CCCCCccccccC--CCCCCEEEeCCCC
Confidence 36677773336777765432 5889999887654332211 122223334555 678888888884
Q ss_pred CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CC-----ceEEEEeCCCCCCCceeeecCC
Q psy17342 190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-ED-----GNVYSACRHGNKAGNVECYEGH 263 (401)
Q Consensus 190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----~~i~~~~~~~~~~~~~~~~~~~ 263 (401)
+..+.+||..+.. -.....+.. .... .+++.. +++++++.|+ .+ ..+.+||....+- ..+...
T Consensus 264 ~~~v~~yd~~t~~-W~~~~~~~~-----~R~~-~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W---~~~~~~ 332 (656)
T 1k3i_A 264 AKKTSLYDSSSDS-WIPGPDMQV-----ARGY-QSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW---TSLPNA 332 (656)
T ss_dssp TTCEEEEEGGGTE-EEECCCCSS-----CCSS-CEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEE---EEETTS
T ss_pred CCceEEecCcCCc-eeECCCCCc-----cccc-cceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcc---eeCCCc
Confidence 4579999987521 111111111 1111 233344 5788888888 34 4588899875432 111100
Q ss_pred C-Cce----eeeecCccCCCCCCCcEEEEEeCCC---------eEEEEEeeCCCceEEEeecCC---------ceEEEEE
Q psy17342 264 E-GPV----VGLSSHRAQGHIDFSHLYLTSSYDW---------SVKLWNIKENKPVHSFNEFRD---------YVMDVQW 320 (401)
Q Consensus 264 ~-~~v----~~i~~~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~---------~v~~v~~ 320 (401)
. .+. ....+..+ +..++.++.++ .+..||..+..-......+.. .-.++.+
T Consensus 333 ~~~p~~~~~~~~~~~~~------~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 333 KVNPMLTADKQGLYRSD------NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp CSGGGCCCCTTGGGTTT------CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred cccccccccccceeecC------CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence 0 000 01112222 35555565444 567888876553333222111 2244555
Q ss_pred CCCCCcEEEEEecCC-----------EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----------
Q psy17342 321 SPINPALFATVEVAG-----------RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK---------- 379 (401)
Q Consensus 321 ~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------- 379 (401)
...+..+++.|+.++ .|.+||..+................-.++...|+|++++.|+.+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 443334888887543 67888877654221110011111122345667899999999864
Q ss_pred -CcEEEEEeccCccceee
Q psy17342 380 -GAITMFDVGEVGIACLK 396 (401)
Q Consensus 380 -g~v~iw~~~~~~~~~l~ 396 (401)
..+.+||..+.+...+.
T Consensus 487 ~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CCCCEEEEGGGTEEEECC
T ss_pred ccceEEEcCCCCceeecC
Confidence 46899999887654443
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.60 E-value=4.2e-05 Score=73.48 Aligned_cols=252 Identities=7% Similarity=-0.077 Sum_probs=133.8
Q ss_pred ceEEEEec-CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC-CCCceEEEecCCCeeEEEEeCCCCceEEEEecC----
Q psy17342 67 NVTYMDWS-TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS---- 140 (401)
Q Consensus 67 ~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---- 140 (401)
.+...+|| |||++|+.+... .++....|+++|+.++ +.+.... . .....++|+|++..++++. .+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~-----~G~~~~~l~v~dl~~g~~~l~~~~-~--~~~~~~~WspDg~~l~y~~-~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDM-----SGNEVYTIEFKRISDPSQTIADKV-S--GTNGEIVWGPDHTSLFYVT-KDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEES-----SSSSCEEEEEEETTCTTCCCCCCE-E--EECSCCEECSSTTEEEEEE-ECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeC-----CCCceEEEEEEECCCCCEeCCccc-c--CceeeEEEecCCCEEEEEE-ECCCCC
Confidence 57889999 999998887731 1122346999999987 6433211 1 1235789999986666554 33
Q ss_pred -CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC---CCcEEEeeccCCCCCcccccccccccc
Q psy17342 141 -GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQ 216 (401)
Q Consensus 141 -g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~ 216 (401)
..|.++++.+....... +...........+.| ++++++|+..+. ...|.++|+...........+. .
T Consensus 246 ~~~v~~~~lgt~~~~~~l---v~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~ 316 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVC---LYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----P 316 (751)
T ss_dssp EEEEEEEETTSCGGGCEE---EEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----C
T ss_pred CCEEEEEECCCCchhcEE---EEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----c
Confidence 35788888765422110 000122234567778 999998876653 3357777876521111001111 1
Q ss_pred CCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceee-ecCCCC--ceeeeecCccCCCCCCCcEEEEEe
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVEC-YEGHEG--PVVGLSSHRAQGHIDFSHLYLTSS 289 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~-~~~~~~--~v~~i~~~~~~~~~~~~~~l~s~~ 289 (401)
.......++.|+ ..+.+++....+ ..|+.+++... . .... +..+.. .+..+.+.. +.++++..
T Consensus 317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~-~-~~~~~li~~~~~~~l~~~~~~~-------~~lv~~~~ 386 (751)
T 2xe4_A 317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQP-S-DWSHVLVDHSEDVFMESIAVRS-------NYLVVAGR 386 (751)
T ss_dssp CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTST-T-CCCCEEECCCSSEEEEEEEECS-------SEEEEEEE
T ss_pred CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCc-c-cceeeEECCCCCcEEEEEEEEC-------CEEEEEEE
Confidence 123344555555 334444444433 35777776531 1 1122 222332 344555542 46677777
Q ss_pred CCCeEEE--EEe-------eCCCceEEEeec-CCceEEEEE----CCCCCcEEEEEecC---CEEEEEeCCCCC
Q psy17342 290 YDWSVKL--WNI-------KENKPVHSFNEF-RDYVMDVQW----SPINPALFATVEVA---GRVDLWNLNLDT 346 (401)
Q Consensus 290 ~d~~i~i--wd~-------~~~~~~~~~~~~-~~~v~~v~~----~~~~~~~l~~~~~d---~~i~iwd~~~~~ 346 (401)
.++..+| +|+ ..++....+... ...+..+.+ ++++..++++.+.. ..+..+|+.+++
T Consensus 387 ~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 387 RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7886555 454 233314444321 122334433 44665566655443 467777877654
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.60 E-value=0.00011 Score=59.92 Aligned_cols=207 Identities=11% Similarity=0.054 Sum_probs=129.7
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
...+..++|.|++..++++...++.|...|.. ++.... +.+.+ ......|++ .+++.++++.-.++.+.+++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----i~l~g-~~D~EGIa~--~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----IPLDF-VKDLETIEY--IGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----EECSS-CSSEEEEEE--CSTTEEEEEETTTTEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----EecCC-CCChHHeEE--eCCCEEEEEECCCCcEEEEE
Confidence 35799999999876677777788889888887 442211 11222 246778888 67887777766778899988
Q ss_pred ccCCCCCc--cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC-CCCceeeec-------CCCCce
Q psy17342 198 LEMLSSPQ--ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN-KAGNVECYE-------GHEGPV 267 (401)
Q Consensus 198 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~~~~~-------~~~~~v 267 (401)
+....... ....+.. ...........++|+ +.++.|+++.+.....+|..++. ....+..+. .+...+
T Consensus 98 v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPL-QESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeecccc-ccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 86533211 1111110 012345567899999 66666666666544444443321 000111111 123457
Q ss_pred eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC---------CceEEEEECCCCCcEEEEEecCCEEE
Q psy17342 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---------DYVMDVQWSPINPALFATVEVAGRVD 338 (401)
Q Consensus 268 ~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l~~~~~d~~i~ 338 (401)
.+++++|.. +.+++.....+.+.++|.. ++.+..+.-.. ...-.|+|.++|. ++++ ++-+.++
T Consensus 176 S~l~~dp~t-----g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y 247 (255)
T 3qqz_A 176 SGAEFNQQK-----NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFY 247 (255)
T ss_dssp CEEEEETTT-----TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEE
T ss_pred eeEEEcCCC-----CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEE
Confidence 889999986 6788888888899999965 66666655322 2567999999996 5554 6667666
Q ss_pred EEeC
Q psy17342 339 LWNL 342 (401)
Q Consensus 339 iwd~ 342 (401)
.+.-
T Consensus 248 ~f~~ 251 (255)
T 3qqz_A 248 RFTP 251 (255)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6643
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=5.7e-05 Score=66.36 Aligned_cols=222 Identities=9% Similarity=-0.057 Sum_probs=134.4
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
...|+..++........ .........++| .+ ++.++++-...+.|..+++... ..... +.. .
T Consensus 95 ~~~I~~i~~~~~~~~~~-------~~~~~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~--~~~~~-~~~-----~ 157 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLL-------LNNLENAIALDF--HHRRELVFWSDVTLDRILRANLNGS--NVEEV-VST-----G 157 (386)
T ss_dssp BSCEEEECTTSCCCEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC--CEEEE-ECS-----S
T ss_pred CccceeeccCCCcEEEE-------ecCCCccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCC--CcEEE-EeC-----C
Confidence 46788888876543221 122345778998 65 4555556566788888887642 11111 000 1
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKLW 297 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~iw 297 (401)
......+++.+..+.++++-...+.|.+.++.+... ...+.........+++.|.. +.++++-... +.|..+
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~P~giavdp~~-----g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EEEECSSCSCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EEeecCCCCCCcEEEEEcCC-----CeEEEeccCCCCEEEEE
Confidence 123456777744556666667778899988875432 22223333456889999874 4556655445 678888
Q ss_pred EeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342 298 NIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 298 d~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 376 (401)
++.. .....+ ...-...+.++++|++..++++-...+.|..+|+..... ..+. .........+++ ..+.++++-
T Consensus 231 ~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 231 SMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQGLPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp ETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEE--CSSCSSEEEEEE-ETTEEEEEE
T ss_pred eCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEE--ECCCCCceEEEE-ECCEEEEee
Confidence 8754 333333 222345789999987766777777788999999875332 2221 122345667887 345566666
Q ss_pred ecCCcEEEEEeccC
Q psy17342 377 DEKGAITMFDVGEV 390 (401)
Q Consensus 377 ~~dg~v~iw~~~~~ 390 (401)
...+.|..++..++
T Consensus 306 ~~~~~V~~~~~~~G 319 (386)
T 3v65_B 306 WHTKSINSANKFTG 319 (386)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCeEEEEECCCC
Confidence 66778888885555
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=3.2e-06 Score=80.04 Aligned_cols=285 Identities=9% Similarity=-0.025 Sum_probs=146.9
Q ss_pred EEEecC-CCCCeEEEEeccCCCCCC-CCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEe-cCCeEE
Q psy17342 70 YMDWST-QHPELLLASYHRNKEAPN-EPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGT-YSGQIV 144 (401)
Q Consensus 70 ~~~~~~-~~~~l~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~-~dg~v~ 144 (401)
++++.| +++.++.|++....+... .....+.+||..+++........ +.....++++.+++ .+++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 566777 888888888532111100 01136899999887655443333 22334457777766 6777776 456899
Q ss_pred EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CC-----CcEEEeeccCCCCCccccc--ccccccc
Q psy17342 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-ND-----GRLCSWSLEMLSSPQETRD--LQYNNKQ 216 (401)
Q Consensus 145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~~wd~~~~~~~~~~~~--~~~~~~~ 216 (401)
+||..+.+-..... +...... .+++. .+++..++.|+ .+ ..+.+||..+.. -..... ... ..
T Consensus 269 ~yd~~t~~W~~~~~----~~~~R~~-~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-W~~~~~~~~~p--~~ 338 (656)
T 1k3i_A 269 LYDSSSDSWIPGPD----MQVARGY-QSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSLPNAKVNP--ML 338 (656)
T ss_dssp EEEGGGTEEEECCC----CSSCCSS-CEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEETTSCSGG--GC
T ss_pred EecCcCCceeECCC----CCccccc-cceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCc-ceeCCCccccc--cc
Confidence 99988764322211 1111111 23344 46888888888 34 468899986421 000000 000 00
Q ss_pred CCccceEEEEeccCCCCeEEEEcCCc---------eEEEEeCCCCCCCceeeecCCC---------CceeeeecCccCCC
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVVGCEDG---------NVYSACRHGNKAGNVECYEGHE---------GPVVGLSSHRAQGH 278 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~~~~d~---------~i~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~ 278 (401)
.... ...+. .++..++.|+.+| .+..||...... ......+. ..-.++.+....
T Consensus 339 ~~~~---~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~-- 410 (656)
T 1k3i_A 339 TADK---QGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVK-- 410 (656)
T ss_dssp CCCT---TGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTT--
T ss_pred cccc---cceee-cCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCC--
Confidence 0000 01222 3455566665554 456677654321 11111111 111233332222
Q ss_pred CCCCcEEEEEeCCC-----------eEEEEEeeCCCceEEE--eecCCc-eEEEEECCCCCcEEEEEecC----------
Q psy17342 279 IDFSHLYLTSSYDW-----------SVKLWNIKENKPVHSF--NEFRDY-VMDVQWSPINPALFATVEVA---------- 334 (401)
Q Consensus 279 ~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~v~~~~~~~~~l~~~~~d---------- 334 (401)
+++++.|+.++ .|.+||..+.+-.... ..+... -.+++..|+++ +++.|+.+
T Consensus 411 ---~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 411 ---GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ---TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSB
T ss_pred ---CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCc
Confidence 67888887543 6778887665432221 111222 23456678887 78888754
Q ss_pred -CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342 335 -GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378 (401)
Q Consensus 335 -~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 378 (401)
..+.+||..+.+-...... ...........+.|+|+.++.|+.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~-~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCC-CCccccccHhhcCCCcEEEecCCC
Confidence 4689999876542111000 011122234556789999999985
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=0.00035 Score=67.65 Aligned_cols=292 Identities=11% Similarity=-0.043 Sum_probs=165.8
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE------ecCCCeeEEEEeCCCCceEEEEec
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF------FCQSPVLSCCFAKFNPYLILGGTY 139 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~ 139 (401)
..|.++...+++ .|..++ .+ -+.+||..+++....... -....|.++...+++ .|..|+.
T Consensus 211 ~~i~~i~~d~~g-~lwigt----------~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNG-NIWIGT----------SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATE 276 (781)
T ss_dssp SSEEEEEECTTC-CEEEEE----------TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS--EEEEEES
T ss_pred CceeEEEEcCCC-CEEEEe----------CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeC
Confidence 568888888877 466666 34 688999875432211110 124578898887755 4555666
Q ss_pred CCeEEEEECCCCCCCceee-------cc-ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342 140 SGQIVLWDTRVQKKTPVHR-------TP-LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~-------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 211 (401)
.+-|.+++..+........ .. .........|.++.. .+++. |-.|+.++-|..++.... ........
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~--~~~~~~~~ 351 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN-IWIGTWGGGINFISNAPP--TFHTWSYS 351 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSCC--SCEEEC--
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCCC--cceeeccC
Confidence 4668899987655322111 00 001224567888877 66664 566676777888887531 11111100
Q ss_pred c---ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342 212 Y---NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLT 287 (401)
Q Consensus 212 ~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s 287 (401)
. .........|.++... ++ ..|.+|+.++-|..++........... .......|.++...+. +. |..
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d-~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~------g~-lWi 422 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDD-GQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE------GN-LWF 422 (781)
T ss_dssp --CCCSSCCSSSCEEEEEEC-TT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT------SC-EEE
T ss_pred ccccccCCCCCcceEEEEEc-CC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC------CC-EEE
Confidence 0 0011123468888876 44 456677877778888875321111100 0123456888887765 44 444
Q ss_pred EeCCCeEEEEEeeCCCceEEEe---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee---cCCCCe
Q psy17342 288 SSYDWSVKLWNIKENKPVHSFN---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV---EGAPAL 361 (401)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v 361 (401)
|+.++-+..+|..+++. ..+. .....|.++...+++. + ..|+. +-|..||..+++... +.... .....|
T Consensus 423 gt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~-l-wigt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i 497 (781)
T 3v9f_A 423 GTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKK-I-WIGTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFV 497 (781)
T ss_dssp EETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSE-E-EEEET-TEEEEEESSSSSCCE-EECTTTSSCSCSCE
T ss_pred EeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCC-E-EEEEC-CceEEEeCCCCeEEe-cccCccccccccee
Confidence 66667788888766543 2222 1245789999988885 4 44444 568899987654322 11100 013568
Q ss_pred EEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 362 SRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 362 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.++...++|.+.+.....| |..|+..+++
T Consensus 498 ~~i~~d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 498 RSIAQDSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp EEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred EEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 8999998888655433345 7778876653
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.57 E-value=0.00014 Score=62.90 Aligned_cols=238 Identities=10% Similarity=-0.033 Sum_probs=139.7
Q ss_pred eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeecc
Q psy17342 121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLE 199 (401)
Q Consensus 121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~ 199 (401)
.+|.+..+ .+.++++ ....|+..++........ .........++| .+. +..+++-...+.|..+++.
T Consensus 36 ~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~~~~-------~~~~~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 36 RSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLL-------LNNLENAIALDF--HHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp SCEEESSS-CCEEEEE--CBSCEEEECTTSCCEEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETT
T ss_pred Cccccccc-CceeEee--cccceEEEeCCCCeeEEe-------ecCCCceEEEEE--eccccEEEEEeccCCceEEEecC
Confidence 34444444 3234433 345677777765443211 122334788998 654 4455555567888888876
Q ss_pred CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342 200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI 279 (401)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 279 (401)
... ..... . ........+++.+..+.++++-...+.|.+.++.+... .............+++.|..
T Consensus 104 g~~-~~~~~--~-----~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~~iavdp~~--- 170 (349)
T 3v64_C 104 GSN-VEEVV--S-----TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPME--- 170 (349)
T ss_dssp SCS-CEEEE--C-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEEEEEEETTT---
T ss_pred CCC-ceEEE--e-----CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcceEEEecCc---
Confidence 421 11111 0 01224567888744556666667778999999875432 22222333456889999864
Q ss_pred CCCcEEEEEeCC-CeEEEEEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342 280 DFSHLYLTSSYD-WSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357 (401)
Q Consensus 280 ~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 357 (401)
+.++++-... +.|...++.. .....+. ..-...+.++++|++..++++-...+.|..+|+..... ..+. ...
T Consensus 171 --g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~--~~~ 244 (349)
T 3v64_C 171 --GTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQG 244 (349)
T ss_dssp --TEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSS
T ss_pred --CeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEE--eCC
Confidence 5666665555 7888888753 3333332 22345789999987776777777778999999875332 2211 122
Q ss_pred CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
......+++ ..+..+++-...+.|..++..++
T Consensus 245 ~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 245 LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 344667777 34555566666777888875454
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=1.3e-05 Score=64.22 Aligned_cols=194 Identities=10% Similarity=0.018 Sum_probs=121.0
Q ss_pred CcEEEEEEeecCCceEEEEEeCCC--cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342 168 HPVFCMSVIGTQNAHNLISISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY 245 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 245 (401)
.-...+.| +. +.++.+.+.+| .|+.+|+.++. ......+.. +. ---.+++. .+...+..-.++.+.
T Consensus 21 ~ftqGL~~--~~-~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l~~-----~~-fgeGi~~~--~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 21 AFTEGLFY--LR-GHLYESTGETGRSSVRKVDLETGR-ILQRAEVPP-----PY-FGAGIVAW--RDRLIQLTWRNHEGF 88 (243)
T ss_dssp CCEEEEEE--ET-TEEEEEECCTTSCEEEEEETTTCC-EEEEEECCT-----TC-CEEEEEEE--TTEEEEEESSSSEEE
T ss_pred cccccEEE--EC-CEEEEECCCCCCceEEEEECCCCC-EEEEEeCCC-----Cc-ceeEEEEe--CCEEEEEEeeCCEEE
Confidence 34668888 54 66677777754 89999998632 333322221 11 11223433 345555666789999
Q ss_pred EEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEE
Q psy17342 246 SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQW 320 (401)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~ 320 (401)
++|..+ .+.+.++..... -..++ ++ +..|+.+..+++|.++|..+.+.+.++.... ..++.+.|
T Consensus 89 v~D~~t--l~~~~ti~~~~~-Gwglt--~d------g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 89 VYDLAT--LTPRARFRYPGE-GWALT--SD------DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEETTT--TEEEEEEECSSC-CCEEE--EC------SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEECCc--CcEEEEEeCCCC-ceEEe--eC------CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 999874 345666553222 23444 44 3444444558899999999998888876522 34567777
Q ss_pred CCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------cCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342 321 SPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------EGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387 (401)
Q Consensus 321 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~ 387 (401)
. +|. +++..-.+..|.+.|.++++.+..+...- ......+.++++|+++.|++.+.-- =++|.+
T Consensus 158 ~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v 231 (243)
T 3mbr_X 158 V-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEI 231 (243)
T ss_dssp E-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred e-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEE
Confidence 6 554 67766678899999999988766655320 1224678999999877776666432 334444
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.55 E-value=8.7e-05 Score=62.97 Aligned_cols=235 Identities=11% Similarity=0.004 Sum_probs=129.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-C-eE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-G-QI 143 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g-~v 143 (401)
.....++|+|+++ |..+.. .++.|..||.+. ... ........+..+++.+++ +++++.... + .|
T Consensus 32 ~~pegia~~~~g~-lyv~d~---------~~~~I~~~d~~g-~~~--~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v 97 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNH---------EVGEIVSITPDG-NQQ--IHATVEGKVSGLAFTSNG-DLVATGWNADSIPV 97 (306)
T ss_dssp CCEEEEEECTTSC-EEEEET---------TTTEEEEECTTC-CEE--EEEECSSEEEEEEECTTS-CEEEEEECTTSCEE
T ss_pred CCcceEEECCCCC-EEEEeC---------CCCeEEEECCCC-ceE--EEEeCCCCceeEEEcCCC-cEEEEeccCCcceE
Confidence 4577899999987 444442 578999999874 222 222334678899999987 455544322 2 46
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc--ccccccccccCCccc
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE--TRDLQYNNKQTKNLA 221 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~ 221 (401)
..++..+++...... . ........++. .+++..+++-..++.|..+|......... ...+........-..
T Consensus 98 ~~~d~~~g~~~~~~~----~-~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 98 VSLVKSDGTVETLLT----L-PDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEECTTSCEEEEEE----C-TTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEcCCCCeEEEEEe----C-CCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 666766655322211 1 11222344554 44555555555688888888653100000 000000000011122
Q ss_pred eEEEEeccCCCCeE-EEEcCCceEEEEeCCCC-CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342 222 VLSLAFPQNDVNNF-VVGCEDGNVYSACRHGN-KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299 (401)
Q Consensus 222 v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 299 (401)
...+ + +++..| ++-...+.|+.++.... .......+. .......+++.++ ++++++....+.|.++|.
T Consensus 171 pngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~d------G~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 171 ANGL--K-RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVE------GNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEE--E-EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTT------CCEEEECBTTCCEEEECT
T ss_pred CCCc--C-cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCC------CCEEEEeCCCCeEEEECC
Confidence 3444 5 556554 55566788999998641 111112221 1133567788887 677777777789999996
Q ss_pred eCCCceE--EEeecCCceEEEEEC---CCCCcEEEEEe
Q psy17342 300 KENKPVH--SFNEFRDYVMDVQWS---PINPALFATVE 332 (401)
Q Consensus 300 ~~~~~~~--~~~~~~~~v~~v~~~---~~~~~~l~~~~ 332 (401)
. ++... .+...-....+++|. |+++.++++..
T Consensus 241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 4 55432 222223568899998 88775655554
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=1.4e-05 Score=73.98 Aligned_cols=275 Identities=11% Similarity=-0.002 Sum_probs=145.6
Q ss_pred CcEEEEEeC-cCCCCCceEEEecCC----------CeeEEEEeCCCCc---eEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342 96 DGVCLIWNT-KFKKTTPEFEFFCQS----------PVLSCCFAKFNPY---LILGGTYSGQIVLWDTRVQKKTPVHRTPL 161 (401)
Q Consensus 96 d~~v~iwd~-~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~---~l~~g~~dg~v~iw~~~~~~~~~~~~~~~ 161 (401)
++.|.-+|. ++++.+=++...... ....+++.|.+.. .++.++.|+.|..+|..+++..-.....-
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~ 151 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD 151 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence 678888888 777655433322110 0123455443322 26777789999999999887643322100
Q ss_pred cccCCCCcEEE-EEEeecCCceEEEEEe------CCCcEEEeeccCCCCCccccccccccc-------------------
Q psy17342 162 SVMAHTHPVFC-MSVIGTQNAHNLISIS------NDGRLCSWSLEMLSSPQETRDLQYNNK------------------- 215 (401)
Q Consensus 162 ~~~~~~~~v~~-~~~~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~------------------- 215 (401)
......+.+ -.+ .++ .++.++ .+|.|.-+|.+++.. .-.........
T Consensus 152 --~~~~~~~~ssP~v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~-~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 224 (599)
T 1w6s_A 152 --IKVGSTLTIAPYV---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (599)
T ss_dssp --GGGTCBCCSCCEE---ETT-EEEECCBCGGGTCCCEEEEEETTTCCE-EEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred --CCccceeecCCEE---ECC-EEEEEecccccCCCCeEEEEECCCCcE-EEEEcCCCCccccccccccccccccccccc
Confidence 000001111 011 133 344443 378888888876331 11111100000
Q ss_pred -----------cCCccce-EEEEeccCCCCeEEEEcCC----------------ceEEEEeCCCCCCCceeeecC--CCC
Q psy17342 216 -----------QTKNLAV-LSLAFPQNDVNNFVVGCED----------------GNVYSACRHGNKAGNVECYEG--HEG 265 (401)
Q Consensus 216 -----------~~~~~~v-~~~~~~~~~~~~l~~~~~d----------------~~i~~~~~~~~~~~~~~~~~~--~~~ 265 (401)
..-...+ ..+++. +....++.++.+ +.|..+|..+.+ .+-.++. |..
T Consensus 225 ~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~~d~ 301 (599)
T 1w6s_A 225 LGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTPHDE 301 (599)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESSTTCS
T ss_pred cccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCCCcc
Confidence 0000001 134455 456677777655 378888887443 3433332 211
Q ss_pred --------ceeeeecC-ccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------Cce-----
Q psy17342 266 --------PVVGLSSH-RAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYV----- 315 (401)
Q Consensus 266 --------~v~~i~~~-~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v----- 315 (401)
++. +... .+ + ..++.++.+|.+.++|.++++++....... .++
T Consensus 302 wd~d~~~~p~l-~d~~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 302 WDYAGVNVMML-SEQKDKD------GKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp SCCCCCCCCEE-EEEECTT------SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred ccccCCCccEE-EeccccC------CcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence 111 1111 12 3 567778899999999999999887665211 111
Q ss_pred ---------------------EEEEECCCCCcEEEEE---------------------------------e------cCC
Q psy17342 316 ---------------------MDVQWSPINPALFATV---------------------------------E------VAG 335 (401)
Q Consensus 316 ---------------------~~v~~~~~~~~~l~~~---------------------------------~------~d~ 335 (401)
..++++|+.. ++++. + .+|
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 1356677655 33321 1 347
Q ss_pred EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
.|..||+.+++.+..... . .+...-.....+..++.++.||.++.||.+++++
T Consensus 454 ~l~A~D~~tG~~~W~~~~--~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKME--R--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp EEEEECTTTCCEEEEEEE--S--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eEEEEECCCCCEEeEecC--C--CCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 889999998876555432 1 1111111223567788899999999999999963
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.53 E-value=8e-05 Score=63.20 Aligned_cols=231 Identities=13% Similarity=0.070 Sum_probs=129.0
Q ss_pred CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEe
Q psy17342 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSW 196 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~w 196 (401)
.....++|.+++ +++++-..++.|..||...... .. .........+++ .+++.++++..... .|..+
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-~~-------~~~~~~p~gia~--~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-IH-------ATVEGKVSGLAF--TSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-EE-------EECSSEEEEEEE--CTTSCEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-EE-------EeCCCCceeEEE--cCCCcEEEEeccCCcceEEEE
Confidence 567889999976 5666666788999998765321 11 112346788888 88888666554333 35555
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee--------eecCCCCcee
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE--------CYEGHEGPVV 268 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~v~ 268 (401)
+.... ......... .......++.. +++..+++-..++.|+.+|.......... .....-...+
T Consensus 101 d~~~g-~~~~~~~~~------~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 101 VKSDG-TVETLLTLP------DAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp ECTTS-CEEEEEECT------TCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred cCCCC-eEEEEEeCC------CccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 64431 111111111 11122334434 44444555556889999987532111100 0001111233
Q ss_pred eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCc--eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342 269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345 (401)
Q Consensus 269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~ 345 (401)
.+ +|+. +.++++-...+.|..+++.. ++. ...+.. ......++++++|. ++++....+.|.++|.. +
T Consensus 173 gi--s~dg-----~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 173 GL--KRFG-----NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp EE--EEET-----TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-C
T ss_pred Cc--CcCC-----CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCC-C
Confidence 44 5652 34556666678999999874 322 222222 23456789999996 66666667889999875 4
Q ss_pred CCCcceEEeecCCCCeEEEEec---CCCcEEEEEecC
Q psy17342 346 TEVPATSAIVEGAPALSRVTWT---PNGTQLCVGDEK 379 (401)
Q Consensus 346 ~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~d 379 (401)
+....... .......++++|. |+++.|++.+..
T Consensus 243 ~~~~~~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 243 STTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CEEEEeec-ccccCCceEEEEecccCCCCEEEEECCC
Confidence 32111111 1123568899998 898777766543
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00037 Score=59.32 Aligned_cols=227 Identities=8% Similarity=-0.070 Sum_probs=137.1
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC----CCCceeeccccccCCCCcEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ----KKTPVHRTPLSVMAHTHPVF 171 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~----~~~~~~~~~~~~~~~~~~v~ 171 (401)
...|+..|+.+.... ........+..++|.+.+..+.++-..++.|..+++... ..... +...-....
T Consensus 9 ~~~I~~i~~~~~~~~--~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~------~~~~~~~p~ 80 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ISRDIQAPD 80 (316)
T ss_dssp BSSEEEEETTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------ECSSCSCCC
T ss_pred CCeEEEEECCCcceE--ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE------EeCCCCCcC
Confidence 567889999865433 233445678899999876567777667789999998762 11111 111123346
Q ss_pred EEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeC
Q psy17342 172 CMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACR 249 (401)
Q Consensus 172 ~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~ 249 (401)
.+++ .+ .+..+++-...+.|.+.++.. ...... .. ........++++|..+.++++.... +.|...++
T Consensus 81 glav--d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~-~~-----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 81 GLAV--DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTS--SSEEEE-EE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEEE--eecCCeEEEEECCCCEEEEEeCCC--CceEEE-EE-----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 7777 54 455556666788899998763 111111 11 1223568899994344444444443 78988888
Q ss_pred CCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCCCC
Q psy17342 250 HGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPINP 325 (401)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~ 325 (401)
.+.. ...+ ...-...+.++++|.. +.++++-+..+.|..+|+.. .....+.. ......++++.. +
T Consensus 151 dG~~---~~~~~~~~~~~P~gla~d~~~-----~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~- 219 (316)
T 1ijq_A 151 NGVD---IYSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-D- 219 (316)
T ss_dssp TSCC---EEEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-T-
T ss_pred CCCC---eEEEEECCCCCceEEEEeccC-----CEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-C-
Confidence 6543 2222 2223456789999874 45666666678999999864 33344432 123467788853 4
Q ss_pred cEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342 326 ALFATVEVAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 326 ~~l~~~~~d~~i~iwd~~~~~~~~~~ 351 (401)
.++++-...+.|..++..+++....+
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 47777777889999998766654433
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.48 E-value=0.00056 Score=60.30 Aligned_cols=229 Identities=10% Similarity=-0.004 Sum_probs=135.7
Q ss_pred cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342 139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217 (401)
Q Consensus 139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 217 (401)
....|+..++........ ......+..++| .+. +..+++-...+.|..+++...........+ ...
T Consensus 90 ~~~~I~~i~l~~~~~~~~-------~~~~~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~----~~~ 156 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----ISR 156 (400)
T ss_dssp ETTEEEEECTTSCSCEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEE----ECS
T ss_pred ccceeEEEccCCcceeEe-------ccccCcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEE----EeC
Confidence 357888888876653321 233456789999 654 445555556778888887641100001111 011
Q ss_pred CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEE
Q psy17342 218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKL 296 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~i 296 (401)
.......+++.+..++++++-...+.|.+.++.+... ...+.........|++.|.. +.++++-.. .+.|..
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK 229 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEE
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEE
Confidence 2335678888844566666777788999999875432 22222233456889999874 455555433 367888
Q ss_pred EEeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342 297 WNIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV 375 (401)
Q Consensus 297 wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 375 (401)
.++.. .....+ ...-...+.|+++|++..++++-...+.|..+|+..... ..+......-.....+++. .+.++++
T Consensus 230 ~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywt 306 (400)
T 3p5b_L 230 GGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWT 306 (400)
T ss_dssp EETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred EeCCC-CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence 88754 333333 332356789999988776777666778999999875432 2222111112345567763 3455566
Q ss_pred EecCCcEEEEEeccC
Q psy17342 376 GDEKGAITMFDVGEV 390 (401)
Q Consensus 376 ~~~dg~v~iw~~~~~ 390 (401)
-...+.|..++..++
T Consensus 307 d~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 307 DIINEAIFSANRLTG 321 (400)
T ss_dssp ESSSCSEEEEESSSC
T ss_pred cCCCCeEEEEEcCCC
Confidence 666788988886665
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=5.3e-05 Score=70.27 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=69.8
Q ss_pred cEEEEEeCCCeEEEEEeeCCCceEEEeecCC-------------ce--------------------------------EE
Q psy17342 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-------------YV--------------------------------MD 317 (401)
Q Consensus 283 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~v--------------------------------~~ 317 (401)
..++.++.+|.++++|.++++.+..+..... ++ ..
T Consensus 337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 416 (582)
T 1flg_A 337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP 416 (582)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence 4788899999999999999998876654220 00 13
Q ss_pred EEECCCCCcEEEEEe--------------------------------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEE
Q psy17342 318 VQWSPINPALFATVE--------------------------------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT 365 (401)
Q Consensus 318 v~~~~~~~~~l~~~~--------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 365 (401)
++++|+...+++... .+|.|..||+.+++.+..... .. ++..-.
T Consensus 417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~--~~~~g~ 492 (582)
T 1flg_A 417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HL--PLWAGV 492 (582)
T ss_dssp CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SS--CCCSCC
T ss_pred ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CC--CCcccc
Confidence 456666553333221 257899999999886655432 21 111111
Q ss_pred ecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 366 WTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 366 ~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
....+.+++.++.||.++.||.+++++
T Consensus 493 ~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 493 LATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 222466788899999999999999953
No 273
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.44 E-value=2.6e-05 Score=63.11 Aligned_cols=186 Identities=11% Similarity=0.047 Sum_probs=111.1
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCC--cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPD--GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v 143 (401)
.-...+.|+ ++..+.+.+ .+ +.|+++|+++++.+.+..+. .........+++..+.+..-.++.+
T Consensus 43 ~ftqGL~~~-~~~LyestG----------~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTG----------LNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEE----------ETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred cccceEEEE-CCEEEEECC----------CCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEEEeeCCEE
Confidence 335778898 665555555 33 49999999999887766554 3343332333354555555678999
Q ss_pred EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc-cce
Q psy17342 144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN-LAV 222 (401)
Q Consensus 144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~v 222 (401)
.+||..+.+...... ... .-..+++ ++..|+.+..++.|.++|..+.. ....+.... .+.. ..+
T Consensus 110 ~v~D~~t~~~~~ti~----~~~---eG~glt~----dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~---~g~~~~~l 174 (262)
T 3nol_A 110 FVWNIRNLRQVRSFN----YDG---EGWGLTH----NDQYLIMSDGTPVLRFLDPESLT-PVRTITVTA---HGEELPEL 174 (262)
T ss_dssp EEEETTTCCEEEEEE----CSS---CCCCEEE----CSSCEEECCSSSEEEEECTTTCS-EEEEEECEE---TTEECCCE
T ss_pred EEEECccCcEEEEEE----CCC---CceEEec----CCCEEEEECCCCeEEEEcCCCCe-EEEEEEecc---CCcccccc
Confidence 999999877543322 112 2234544 66777776667889999987633 222222211 0011 234
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------------CCCceeeeecCccCCCCCCCcEEEEE
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------------HEGPVVGLSSHRAQGHIDFSHLYLTS 288 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~~~~~~~l~s~ 288 (401)
..+.|. ++...+..-.+..|.+.|..+.+ .+..+.. .....+.|+++|.. ..++++|
T Consensus 175 NELe~~--~G~lyan~w~~~~I~vIDp~tG~--V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-----~~lfVTG 243 (262)
T 3nol_A 175 NELEWV--DGEIFANVWQTNKIVRIDPETGK--VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-----HRLFVTG 243 (262)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEECTTTCB--EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-----TEEEEEE
T ss_pred ceeEEE--CCEEEEEEccCCeEEEEECCCCc--EEEEEECCcCccccccccCcCCceEEEEEcCCC-----CEEEEEC
Confidence 456665 56666555578889998887443 3333321 12345889999984 4555555
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.42 E-value=3.1e-05 Score=71.75 Aligned_cols=81 Identities=11% Similarity=-0.032 Sum_probs=51.7
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
++.|..||+.+++.+.++... ..+.+..+...+. +++.++.|+.|+.+|.++++.+..+.. +....-.-+.+..+|
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKM--PSGGIGSPMTYSFKG 518 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEEeC--CCCcEeeeEEEEECC
Confidence 578999999999988887652 2233222222344 566688999999999999987766543 221111223455777
Q ss_pred cEEEE
Q psy17342 371 TQLCV 375 (401)
Q Consensus 371 ~~l~~ 375 (401)
+.++.
T Consensus 519 ~~yv~ 523 (571)
T 2ad6_A 519 KQYIG 523 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65543
No 275
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.00025 Score=65.73 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
++.|..||+.+++.+.+..... ++..-.....+. +++.++.|+.++.||.++++.+..+.. +....-.-+.+..+|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~--~~g~~a~P~~y~~~G 540 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT--GSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecC--CCCcccCceEEEECC
Confidence 5889999999999887776532 222111112243 667789999999999999998776654 222111225666788
Q ss_pred cEEE
Q psy17342 371 TQLC 374 (401)
Q Consensus 371 ~~l~ 374 (401)
+..+
T Consensus 541 ~qYv 544 (582)
T 1flg_A 541 EQYL 544 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6443
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.0011 Score=58.30 Aligned_cols=232 Identities=7% Similarity=-0.093 Sum_probs=138.0
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
...|+..++..... .........+..++|.+.+..+.++-...+.|..+++.......... ............+++
T Consensus 91 ~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE--EEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce--EEEeCCCCCcccEEE
Confidence 67899999885433 23344567889999998765666666667889999887532100000 011223345678887
Q ss_pred eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCC
Q psy17342 176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNK 253 (401)
Q Consensus 176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~ 253 (401)
.. .+.++++-...+.|.+.+++. ...... +. ........|++.|..+.++++-.. .+.|+..++.+..
T Consensus 167 --D~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l-~~-----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 167 --DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp --ETTTTEEEEEETTTTEEEEECTTT--CSEEEE-EE-----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred --EecCCceEEEECCCCeEEEEeCCC--CceEEE-Ee-----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 55 555666666778888888763 111111 11 122357889999434444444323 4788888887543
Q ss_pred CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCCCCcEEEE
Q psy17342 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPINPALFAT 330 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~~ 330 (401)
. .......-...+.|+++|.. +.++++-...+.|..+|+... ....+.. ......++++.. ..++.+
T Consensus 237 ~--~~~~~~~l~~P~glavd~~~-----~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~--~~lywt 306 (400)
T 3p5b_L 237 I--YSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE--DKVFWT 306 (400)
T ss_dssp C--EEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEET--TEEEEE
T ss_pred c--EEEEECCCCceEEEEEEeCC-----CEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeC--CEEEEe
Confidence 2 12222233456889999874 455555556788999998643 3333322 123456777743 347777
Q ss_pred EecCCEEEEEeCCCCCCCcce
Q psy17342 331 VEVAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 331 ~~~d~~i~iwd~~~~~~~~~~ 351 (401)
-...+.|..+|..+++....+
T Consensus 307 d~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 307 DIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp ESSSCSEEEEESSSCCCCEEE
T ss_pred cCCCCeEEEEEcCCCCceEEE
Confidence 777788999997777655443
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.35 E-value=0.00094 Score=66.80 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCeEEEEc----------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 232 VNNFVVGC----------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 232 ~~~l~~~~----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
..++++|+ ..|.|++|++...+.+.+... ...++|++++--. + +|++|- ..+|++|++..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~~-------g-~Lla~i-g~~l~vy~l~~ 913 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEFN-------G-KLLASI-NSTVRLYEWTT 913 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEET-------T-EEEEEE-TTEEEEEEECT
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeeeC-------C-EEEEEc-CCEEEEEECCC
Confidence 56888886 458899998864333333222 2467888876432 4 444444 58999999987
Q ss_pred CCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342 302 NKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379 (401)
Q Consensus 302 ~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 379 (401)
.+.+.. ...+. .|..+.....+. +++.|..-..+.+...+.... +..+. .......++++.|-.++ .++.+..+
T Consensus 914 ~~~L~~~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~ 989 (1158)
T 3ei3_A 914 EKELRTECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENA 989 (1158)
T ss_dssp TSCEEEEEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred CceEEEEeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCC
Confidence 654441 11121 122222323344 677776656666655433221 11111 12234568888886554 67779999
Q ss_pred CcEEEEEecc
Q psy17342 380 GAITMFDVGE 389 (401)
Q Consensus 380 g~v~iw~~~~ 389 (401)
|.+.+.....
T Consensus 990 gNl~vl~~~~ 999 (1158)
T 3ei3_A 990 FNLFVCQKDS 999 (1158)
T ss_dssp SEEEEEEECT
T ss_pred CcEEEEecCC
Confidence 9999998865
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.35 E-value=0.00026 Score=65.68 Aligned_cols=78 Identities=15% Similarity=0.007 Sum_probs=49.9
Q ss_pred CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
+|.|..||+.+++.+.+... ..+...-.....+. +++.++.|+.|+.||.++++.+..++. +......-+.+..+|
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l--~~g~~~~P~~y~~~G 527 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKI--PSGAIGYPMTYTHKG 527 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred cCeEEEEECCCCCEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEeeC--CCCcEeccEEEEeCC
Confidence 57899999999998877754 22222111122343 566688999999999999997766653 222222225556788
Q ss_pred cE
Q psy17342 371 TQ 372 (401)
Q Consensus 371 ~~ 372 (401)
+.
T Consensus 528 ~q 529 (599)
T 1w6s_A 528 TQ 529 (599)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.34 E-value=0.00088 Score=56.94 Aligned_cols=210 Identities=7% Similarity=-0.008 Sum_probs=129.6
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
.+..++|++.+..|..+.. ..+.|..+++.............-.....+++.+.+.++.++-...+.|.++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~---------~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGGGTEEEEEET---------TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEeCCCEEEEEEC---------CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 4778999997777777763 6789999998865332333333335677899987665677776677899999
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (401)
+++....... ..........+++ .|.+..|+.+. ..+.|...++.. .....+ .. ..-.....
T Consensus 107 ~~dG~~~~~l------~~~~~~~P~giav--dp~~g~ly~td~~~~~~I~r~~~dG--~~~~~~-~~-----~~l~~Png 170 (318)
T 3sov_A 107 NLDGSLRKVL------FWQELDQPRAIAL--DPSSGFMYWTDWGEVPKIERAGMDG--SSRFII-IN-----SEIYWPNG 170 (318)
T ss_dssp ETTSCSCEEE------ECSSCSSEEEEEE--EGGGTEEEEEECSSSCEEEEEETTS--CSCEEE-EC-----SSCSCEEE
T ss_pred ECCCCcEEEE------EeCCCCCccEEEE--eCCCCEEEEEecCCCCEEEEEEcCC--CCeEEE-EE-----CCCCCccE
Confidence 9876543211 1123345678888 66555555444 256777777653 111111 00 12234678
Q ss_pred EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 304 (401)
++++|.++.++++-+..+.|+.+++.+..... ...+.......+++.. +.++.+-...+.|..++..+++.
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~P~glav~~-------~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VVKGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSCCSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEE--EecCCCCCceEEEEeC-------CEEEEEecCCCeEEEEECCCCCc
Confidence 99994345555555678889999987543221 1222333445666642 46666666678898888877777
Q ss_pred eEEEee
Q psy17342 305 VHSFNE 310 (401)
Q Consensus 305 ~~~~~~ 310 (401)
...+..
T Consensus 242 ~~~i~~ 247 (318)
T 3sov_A 242 LREIHS 247 (318)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 666654
No 280
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.34 E-value=2.4e-05 Score=63.37 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=105.1
Q ss_pred eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342 222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301 (401)
Q Consensus 222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 301 (401)
...+.|+ ++.++.+.+.+|.|+.+|+.+.+ .+.........-..+++.. ..+++..-.++.+.+||..+
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgk--v~~~~l~~~~FgeGit~~g-------~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQ--PVWMERLGNIFAEGLASDG-------ERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSS--CSEEEECTTCCEEEEEECS-------SCEEEEESSSCEEEEEETTT
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCc--EEeEECCCCcceeEEEEeC-------CEEEEEEccCCEEEEEECCc
Confidence 4677777 36677788888999999998554 3443311111112344443 35666666789999999999
Q ss_pred CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC--CCCeEEEEecCCCcEEEEEecC
Q psy17342 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG--APALSRVTWTPNGTQLCVGDEK 379 (401)
Q Consensus 302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~d 379 (401)
.+.+.++.... .-..++ ++++.++++ ..++.|.++|..+.+....+...... -..++.+.|. +|+..+..-.+
T Consensus 126 l~~~~ti~~~~-eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 126 PQRERTTRYSG-EGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp TEEEEEEECSS-CCCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred CcEEEEEeCCC-ceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 99999988633 224454 556645554 45889999999998776665543321 1245677877 77766555567
Q ss_pred CcEEEEEeccCccceeeee
Q psy17342 380 GAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 380 g~v~iw~~~~~~~~~l~~~ 398 (401)
..|.+.|.++++ .+..+
T Consensus 201 ~~I~vIDp~TG~--V~~~I 217 (268)
T 3nok_A 201 SDVLEIDPATGT--VVGVI 217 (268)
T ss_dssp SEEEEECTTTCB--EEEEE
T ss_pred CeEEEEeCCCCc--EEEEE
Confidence 789999999984 44443
No 281
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.33 E-value=0.00016 Score=58.09 Aligned_cols=189 Identities=7% Similarity=-0.067 Sum_probs=110.5
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
.-...+.|++ +..+.+.+. ...+.|+.+|+++++...+..+....--..+++. +..+....-.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~--------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGE--------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp CCEEEEEEET-TEEEEEECC--------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred cccccEEEEC-CEEEEECCC--------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 4567889987 434444441 0235999999999988776655422222334443 5456666667899999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
||..+.+...... ... .-+.+++ ++..|+.+..++.|.++|..+.. ....+.+.. ....-..++.+
T Consensus 90 ~D~~tl~~~~ti~----~~~---~Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~--~g~~~~~lNeL 155 (243)
T 3mbr_X 90 YDLATLTPRARFR----YPG---EGWALTS----DDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTA--GGRPLDNLNEL 155 (243)
T ss_dssp EETTTTEEEEEEE----CSS---CCCEEEE----CSSCEEEECSSSEEEEECTTTCC-EEEEEECEE--TTEECCCEEEE
T ss_pred EECCcCcEEEEEe----CCC---CceEEee----CCCEEEEECCCCeEEEEeCCCCe-EEEEEEEcc--CCcccccceee
Confidence 9998877543322 122 2245554 56667776778899999987633 222222221 00011234455
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-------------CCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-------------GHEGPVVGLSSHRAQGHIDFSHLYLTS 288 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-------------~~~~~v~~i~~~~~~~~~~~~~~l~s~ 288 (401)
.+. ++..++..-.+..|.+.|..+.+ .+..+. ....-.+.|+++|.. ..+++||
T Consensus 156 e~~--~G~lyanvw~s~~I~vIDp~tG~--V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~-----~~lfVTG 222 (243)
T 3mbr_X 156 EWV--NGELLANVWLTSRIARIDPASGK--VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH-----DRLFVTG 222 (243)
T ss_dssp EEE--TTEEEEEETTTTEEEEECTTTCB--EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT-----TEEEEEE
T ss_pred EEe--CCEEEEEECCCCeEEEEECCCCC--EEEEEECCcCccccccccCCcCCceEEEEEcCCC-----CEEEEEC
Confidence 654 55555555567788888887443 333322 112356889999974 4556655
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.00079 Score=59.94 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=134.0
Q ss_pred CeeEEEEeC-CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CC----cE
Q psy17342 120 PVLSCCFAK-FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DG----RL 193 (401)
Q Consensus 120 ~v~~~~~~~-~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg----~i 193 (401)
....|+++| ++.. |+.....+.|+.+|+........ .........+++ +++++.|+.+.. ++ .+
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~-------~~~~~~P~~ia~--d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTV-------YSGLSKVRTICW--THEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEE-------ECCCSCEEEEEE--CTTSSEEEEEECCSCTTSEEE
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEE-------ecCCCCcceEEE--eCCCCEEEEEeCCCCcccceE
Confidence 457889997 3434 44444447888899876543211 123456788999 889885555544 22 23
Q ss_pred EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342 194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 273 (401)
...+... .......+. .......++++|.++.++++-..++.|+.++........+.... .......++++
T Consensus 208 ~~~~~~g--~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~ 278 (430)
T 3tc9_A 208 YILTRES--GFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFH 278 (430)
T ss_dssp EEEEGGG--TSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEEC
T ss_pred EEEeCCC--ceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEc
Confidence 3333321 111111111 12245677888336777777777889999998743211111111 12345789999
Q ss_pred ccCCCCCCCc-EEEEEeCCCeEEEEEeeCC--Cc--eEEEeec---------------CCceE-EEEEC--------CCC
Q psy17342 274 RAQGHIDFSH-LYLTSSYDWSVKLWNIKEN--KP--VHSFNEF---------------RDYVM-DVQWS--------PIN 324 (401)
Q Consensus 274 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~--~~--~~~~~~~---------------~~~v~-~v~~~--------~~~ 324 (401)
|+ ++ ++++-...+.|..++.... +. +..+.+. -.... .++.. +++
T Consensus 279 pd------G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 279 PS------GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp TT------SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred CC------CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence 98 66 5555566789999887642 11 2223221 01123 45553 345
Q ss_pred CcEEEEEecCCEEEEEeCCCCCCCcceEEe-----ec---C-------CCCeEEEEecCC-CcEEEEEecCCcEEEEEec
Q psy17342 325 PALFATVEVAGRVDLWNLNLDTEVPATSAI-----VE---G-------APALSRVTWTPN-GTQLCVGDEKGAITMFDVG 388 (401)
Q Consensus 325 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~---~-------~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~~ 388 (401)
. ++++-...+.|+.++. .+. +..+... .+ + -.....++++|+ |.++++-.....|+.++++
T Consensus 353 ~-lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 353 D-FYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred e-EEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 3 6666666788888883 332 1121110 00 0 124678999995 6655555566778887764
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00035 Score=62.25 Aligned_cols=246 Identities=9% Similarity=0.100 Sum_probs=132.3
Q ss_pred ceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC----
Q psy17342 67 NVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---- 141 (401)
Q Consensus 67 ~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---- 141 (401)
....++++| ++..|.++. ..+.|+.+|++++... ...........++|++++..++++...++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d----------~~~~I~~id~~~~~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVG----------EQHPTRLIDFEKEYVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEE----------BTEEEEEEETTTTEEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEe----------CCCcEEEEECCCCEEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccc
Confidence 467889998 455677776 2388999998854322 22334566889999998843555543222
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
.+...+. .+....... + . .......+++ .+ ++.++++-..++.|..++...... ...... +...
T Consensus 206 ~v~~~~~-~g~~~~~~~--l--~-~~~~p~giav--dp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~------~~~~ 270 (430)
T 3tc9_A 206 NNYILTR-ESGFKVITE--L--T-KGQNCNGAET--HPINGELYFNSWNAGQVFRYDFTTQET-TPLFTI------QDSG 270 (430)
T ss_dssp EEEEEEG-GGTSCSEEE--E--E-ECSSCCCEEE--CTTTCCEEEEETTTTEEEEEETTTTEE-EEEEEC------SSSS
T ss_pred eEEEEeC-CCceeeeee--e--c-cCCCceEEEE--eCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEc------CCCC
Confidence 2333443 222211100 1 1 1123456677 77 666666666778899998763111 011111 1123
Q ss_pred ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCc--eeeecCC---CC------------cee-eeecCcc---CCC
Q psy17342 221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGN--VECYEGH---EG------------PVV-GLSSHRA---QGH 278 (401)
Q Consensus 221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~---~~------------~v~-~i~~~~~---~~~ 278 (401)
....++++ ++++ ++++-...+.|+.++........ ...+.+. .+ ... .+...+. ...
T Consensus 271 ~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 271 WEFHIQFH-PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CCEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred cceeEEEc-CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 46789999 7888 45555677889998776422111 1122111 00 011 2222110 000
Q ss_pred CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec---------C---------CceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342 279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF---------R---------DYVMDVQWSPINPALFATVEVAGRVDLW 340 (401)
Q Consensus 279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~---------~~v~~v~~~~~~~~~l~~~~~d~~i~iw 340 (401)
.+ +.++++-...+.|+.++. .++ +.++.+. . .....++++|++..++++-.....|+.+
T Consensus 350 ~~-g~lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 350 DE-YDFYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp CC-EEEEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CC-CeEEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 00 345555455677888773 343 3333221 1 1467899999533477776677788887
Q ss_pred eCC
Q psy17342 341 NLN 343 (401)
Q Consensus 341 d~~ 343 (401)
+++
T Consensus 427 ~~e 429 (430)
T 3tc9_A 427 GYE 429 (430)
T ss_dssp EEC
T ss_pred ccC
Confidence 754
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.26 E-value=0.0017 Score=62.28 Aligned_cols=227 Identities=11% Similarity=-0.004 Sum_probs=129.8
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCC-ccccccccccccC
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSP-QETRDLQYNNKQT 217 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~ 217 (401)
...|+..++.......+ ......+..|+| .+ ++.++++-...+.|+.+++...... .....+. .
T Consensus 403 ~~~Ir~i~l~~~~~~~l-------~~~~~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-----~ 468 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----R 468 (791)
T ss_dssp BSSEEEECTTSCCCEEE-------ECSCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEEC-----S
T ss_pred ccceeEeeccCCcceee-------ecCCCceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-----c
Confidence 45688878776543211 223456778888 55 4555556666778888887642110 1111111 1
Q ss_pred CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEE
Q psy17342 218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKL 296 (401)
Q Consensus 218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~i 296 (401)
.......|++.+..++++++-...+.|.+.++.+... ...+.........|++.|.. +.++++-... +.|..
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK 541 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEE
Confidence 2234567888844456666677788999999875432 12222333457899999874 4555554333 67888
Q ss_pred EEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342 297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV 375 (401)
Q Consensus 297 wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 375 (401)
.++. +.....+. ..-.....|++++.+..++++-...+.|...++..... ..+......-.....|++.. +.++++
T Consensus 542 ~~~d-G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~-~~lYwt 618 (791)
T 3m0c_C 542 GGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWT 618 (791)
T ss_dssp EETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred EecC-CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC-CEEEEE
Confidence 8875 44444333 23356889999987766666666678999999875432 22221101122344666632 344444
Q ss_pred EecCCcEEEEEeccC
Q psy17342 376 GDEKGAITMFDVGEV 390 (401)
Q Consensus 376 ~~~dg~v~iw~~~~~ 390 (401)
-...+.|...+..++
T Consensus 619 D~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 619 DIINEAIFSANRLTG 633 (791)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred ECCCCEEEEEeCCCC
Confidence 445677877776665
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.25 E-value=0.0017 Score=55.54 Aligned_cols=277 Identities=8% Similarity=-0.033 Sum_probs=139.0
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe---cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
..+.+|.|.+.+..++ ++ ..+.| +...+.++.-...... ....+.++.|.+ + ..++.| ..+.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G----------~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g-~~g~ 100 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VG----------VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVG-EPPI 100 (327)
T ss_dssp SCEEEEEESSSSCEEE-EE----------TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEE-ETTE
T ss_pred CcEEEEEECCCCcEEE-Ec----------CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEE-CCCe
Confidence 5699999987776566 55 36665 3333333322222111 134688999986 3 455554 5664
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
|.. ..+.++. -... .....+.+.+..+.+ .+++..++.+ .+|.|. .....+..-.... .+....+
T Consensus 101 i~~-S~DgG~t-W~~~--~~~~~~~~~~~~i~~--~~~~~~~~~~-~~g~v~--~S~DgG~tW~~~~------~~~~~~~ 165 (327)
T 2xbg_A 101 MLH-TTDGGQS-WSQI--PLDPKLPGSPRLIKA--LGNGSAEMIT-NVGAIY--RTKDSGKNWQALV------QEAIGVM 165 (327)
T ss_dssp EEE-ESSTTSS-CEEC--CCCTTCSSCEEEEEE--EETTEEEEEE-TTCCEE--EESSTTSSEEEEE------CSCCCCE
T ss_pred EEE-ECCCCCC-ceEC--ccccCCCCCeEEEEE--ECCCCEEEEe-CCccEE--EEcCCCCCCEEee------cCCCcce
Confidence 433 3332322 1100 000123345677776 4556655554 455442 2222111111111 1133467
Q ss_pred EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN 302 (401)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 302 (401)
..+++. +++.+++++...+..+-.|-....-..+ -......+..+.+.|+ +.++ ..+.+|.+++.+...+
T Consensus 166 ~~~~~~-~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~------g~~~-~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 166 RNLNRS-PSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPD------GRLW-MIVNGGKIAFSDPDNS 235 (327)
T ss_dssp EEEEEC-TTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTT------SCEE-EEETTTEEEEEETTEE
T ss_pred EEEEEc-CCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCC------CCEE-EEeCCceEEEecCCCC
Confidence 889998 5666666665443333344312222122 1234566788888876 4555 4455788777632212
Q ss_pred CceEEEee----cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342 303 KPVHSFNE----FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378 (401)
Q Consensus 303 ~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 378 (401)
+.-..+.. +...+.++.+.+++. +++++. ++.| .+....++.-..+.........+..+.|.+++. +++++.
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred CeeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 21111111 123588999998775 566554 6766 344443432111110001234578888876655 556667
Q ss_pred CCcEEEEE
Q psy17342 379 KGAITMFD 386 (401)
Q Consensus 379 dg~v~iw~ 386 (401)
+|.|.-++
T Consensus 312 ~G~i~~~~ 319 (327)
T 2xbg_A 312 KGILLRYV 319 (327)
T ss_dssp TTEEEEEC
T ss_pred CceEEEEc
Confidence 88766554
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.23 E-value=0.0019 Score=61.89 Aligned_cols=233 Identities=7% Similarity=-0.098 Sum_probs=134.1
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
...|+..++..... .........+..|+|.+....++++-...+.|+.+++........... .+.........|++
T Consensus 403 ~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~--vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAV 478 (791)
T ss_dssp BSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSCSCCCEEEE
T ss_pred ccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE--EEecCCCCcceeee
Confidence 46677777774432 223344567889999986656666766678899998875321000000 01222334556777
Q ss_pred eecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeCCCCC
Q psy17342 176 IGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACRHGNK 253 (401)
Q Consensus 176 ~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~ 253 (401)
...+ .++++-...+.|.+.++.. .....+ +. ........|++.|..+.++++-... +.|...++.+..
T Consensus 479 --D~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l-~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 479 --DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTS--SSEEEE-EE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred --eecCCcEEEEecCCCeEEEEeCCC--CeEEEE-Ee-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 5444 5566666778899988863 221111 11 1223578999994344444444333 788888887543
Q ss_pred CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEECCCCCcEEEEE
Q psy17342 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSPINPALFATV 331 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~ 331 (401)
. .......-.....|++.+.. +.++++-.....|...++........+.. .-....+|++..+ .++++-
T Consensus 549 ~--~~lv~~~l~~P~GLavD~~~-----~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD 619 (791)
T 3m0c_C 549 I--YSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD 619 (791)
T ss_dssp E--EEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEE
T ss_pred e--EEEEeCCCCCceEEEEecCC-----CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEE
Confidence 2 22222233467889998774 45555555567899999864433333332 1223457776443 477777
Q ss_pred ecCCEEEEEeCCCCCCCcce
Q psy17342 332 EVAGRVDLWNLNLDTEVPAT 351 (401)
Q Consensus 332 ~~d~~i~iwd~~~~~~~~~~ 351 (401)
...+.|...|..+++.+..+
T Consensus 620 ~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 620 IINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEEeCCCCcceEEe
Confidence 77788988887776554443
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.20 E-value=0.0041 Score=58.13 Aligned_cols=226 Identities=9% Similarity=-0.075 Sum_probs=139.4
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
...|+..++++...........-..+..++|.+.+..+.++-..++.|..++++........ .........+++
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~------~~g~~~P~GlAv 87 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV------EFGLDYPEGMAV 87 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------CSSCSCCCEEEE
T ss_pred CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE------eCCCCCcceEEE
Confidence 68899999985433221222233578899999977667777667889999998765432221 111134456776
Q ss_pred eecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCC
Q psy17342 176 IGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNK 253 (401)
Q Consensus 176 ~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~ 253 (401)
... ++++++-...+.|.+.++... ..... .. ..-.....+++.|..+.++++- +..+.|...++.+..
T Consensus 88 --D~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l-~~-----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 88 --DWLGKNLYWADTGTNRIEVSKLDGQ--HRQVL-VW-----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTST--TCEEE-EC-----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred --EeCCCEEEEEECCCCEEEEEecCCC--cEEEE-Ee-----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 444 455566666778888888632 11111 10 1234578999994455444443 235788888887554
Q ss_pred CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV 333 (401)
Q Consensus 254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~ 333 (401)
.. .+...-.....|++.+.. +.++++-...+.|...|+..... ..+........++++.. + .++++-..
T Consensus 158 ~~---~l~~~~~~P~GlalD~~~-----~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~tD~~ 226 (628)
T 4a0p_A 158 RT---TLVPNVGRANGLTIDYAK-----RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYWTDWS 226 (628)
T ss_dssp CE---EEECSCSSEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEEEETT
T ss_pred eE---EEECCCCCcceEEEcccc-----CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEEecCC
Confidence 22 222234456789999864 45556656678899999865433 34444344566888865 3 47777767
Q ss_pred CCEEEEEeCCCCCCC
Q psy17342 334 AGRVDLWNLNLDTEV 348 (401)
Q Consensus 334 d~~i~iwd~~~~~~~ 348 (401)
.+.|...|..+++..
T Consensus 227 ~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 227 RRSIERANKTSGQNR 241 (628)
T ss_dssp TTEEEEEETTTCCSC
T ss_pred CCEEEEEECCCCCce
Confidence 889999987766543
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.0031 Score=56.13 Aligned_cols=240 Identities=7% Similarity=-0.082 Sum_probs=132.8
Q ss_pred CeeEEEEeCC--CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---Cc-E
Q psy17342 120 PVLSCCFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GR-L 193 (401)
Q Consensus 120 ~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~-i 193 (401)
....++|.|+ +.. |+.+...+.|+.++..++..... .........+++ .+++.++++.... .. +
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~-------~~~~~~P~giav--d~dG~lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIK-------TTNIGQCADVNF--TLNGDMVVVDDQSSDTNTGI 209 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEE-------CCCCSCEEEEEE--CTTCCEEEEECCSCTTSEEE
T ss_pred CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEe-------ecCCCCccEEEE--CCCCCEEEEcCCCCcccceE
Confidence 4568999984 334 44444448899999876553211 223445789999 8898844444321 11 2
Q ss_pred EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-c-CCCCceeeee
Q psy17342 194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-E-GHEGPVVGLS 271 (401)
Q Consensus 194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~-~~~~~v~~i~ 271 (401)
...+... .......+ ........++++|.++.++++-..++.|+.++..... ....+ . +....-..++
T Consensus 210 ~~~~~~~--~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~~~~~~~ia 279 (433)
T 4hw6_A 210 YLFTRAS--GFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDTKGSNFHIV 279 (433)
T ss_dssp EEECGGG--TTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSCCSSCEEEE
T ss_pred EEEECCC--Ceeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCCCCCcccEE
Confidence 2232221 11100000 0122345678883366666666677889999886332 21111 1 1112234699
Q ss_pred cCccCCCCCCCc-EEEEEeCCCeEEEEEeeC--CCc--eEEEeec---------------CCceEEEEE---------CC
Q psy17342 272 SHRAQGHIDFSH-LYLTSSYDWSVKLWNIKE--NKP--VHSFNEF---------------RDYVMDVQW---------SP 322 (401)
Q Consensus 272 ~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~--~~~--~~~~~~~---------------~~~v~~v~~---------~~ 322 (401)
++|+ ++ ++++-...+.|+.+++.. ++. ...+.+. -.....+++ .+
T Consensus 280 ~dpd------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 280 WHPT------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp ECTT------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred EeCC------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 9998 56 555555678999988752 221 1223221 123567999 67
Q ss_pred CCCcEEEEEecCCEEEEEeCCCCCCCcceEEee--------c-------CCCCeEEEEec-CCCcEEEEEecCCcEEEEE
Q psy17342 323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIV--------E-------GAPALSRVTWT-PNGTQLCVGDEKGAITMFD 386 (401)
Q Consensus 323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~-------~~~~v~~~~~s-~~g~~l~~~~~dg~v~iw~ 386 (401)
++. ++++-...+.|+.++.. +. +..+.... . .-.....++++ ++|.++++=...+.|+.++
T Consensus 354 ~g~-lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 354 EYD-FYFCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp CEE-EEEEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCc-EEEEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 775 67776677899998852 32 11111000 0 01236788998 5666666656677788877
Q ss_pred ec
Q psy17342 387 VG 388 (401)
Q Consensus 387 ~~ 388 (401)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.17 E-value=3e-05 Score=73.54 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=124.6
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
.+.|+..++........ ......+..++| .+.+..|+ +-...+.|..+++...........+. ...
T Consensus 385 ~~~I~~id~~~~~~~~~-------~~~~~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~ 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD 451 (699)
T ss_dssp TTC-CEECTTSCCEECC-------SCCCTTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSC
T ss_pred ccceEEEeCCCCcceee-------eccCcceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCC
Confidence 45677777766543211 112234567888 66554444 44456789888876411000111110 001
Q ss_pred ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKL 296 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~i 296 (401)
......|++.+..++++++-...+.|.++++.+.. ...+ .........|++.|.. +.++++-... +.|..
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~-----g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK 523 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSS-----SCCEECCCSSSCCEEB
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCC-----CcEEEcccCCCCeEEE
Confidence 12345678774455566665677889999887542 2222 2223445788898874 4555544333 67888
Q ss_pred EEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342 297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV 375 (401)
Q Consensus 297 wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 375 (401)
+++.. .....+. ..-...+.|+|+|++..++++-+..+.|..+++..... ..+............+++..+ .++++
T Consensus 524 ~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywt 600 (699)
T 1n7d_A 524 GGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWT 600 (699)
T ss_dssp CCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred EeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEE
Confidence 77753 3223332 22334678999998766777777788999999875322 221110011122334555443 45555
Q ss_pred EecCCcEEEEEeccC
Q psy17342 376 GDEKGAITMFDVGEV 390 (401)
Q Consensus 376 ~~~dg~v~iw~~~~~ 390 (401)
....+.|..++..++
T Consensus 601 d~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 601 DIINEAIFSANRLTG 615 (699)
T ss_dssp CSTTTCEEEEETTTE
T ss_pred eCCCCeEEEEEccCC
Confidence 566788999987665
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.16 E-value=0.0049 Score=57.57 Aligned_cols=290 Identities=9% Similarity=-0.005 Sum_probs=156.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
..+..++|++.+..|..+.. ..+.|..++++..................+++.+.+.++.++-...+.|.+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~---------~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v 110 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEV 110 (619)
T ss_dssp SCEEEEEEETTTTEEEEEET---------TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEEeCCCEEEEEEC---------CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEE
Confidence 45789999998888887773 578899999874422222222223578899999877677777777889999
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (401)
.+++........ ...-.....|++ .|.+..|+.+.. .+.|...++.. ....... . ..-....
T Consensus 111 ~~~dG~~~~~l~------~~~l~~P~~Iav--dp~~g~ly~tD~g~~~~I~r~~~dG--~~~~~l~-~-----~~~~~P~ 174 (619)
T 3s94_A 111 SNLDGSLRKVLF------WQELDQPRAIAL--DPSSGFMYWTDWGEVPKIERAGMDG--SSRFIII-N-----SEIYWPN 174 (619)
T ss_dssp EETTSCSCEEEE------CSSCSCCCCEEE--ETTTTEEEEEECSSSCEEEEEETTS--CSCEEEE-C-----SSCSSEE
T ss_pred EECCCCCEEEEE------eCCCCCCceEEE--ecCCCeEEEeccCCCCEEEEEECCC--CceEEEE-e-----CCCCCCc
Confidence 999865432221 122234557877 665444444332 34565555542 2211111 0 1223578
Q ss_pred EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303 (401)
Q Consensus 224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 303 (401)
.|++++.++.++++-...+.|..+++.+.....+. .+......+|++.. ..++++-...+.|...|..+++
T Consensus 175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--~~~~~~P~gi~~~~-------~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESS-------SEEEEECTTTCSEEEEESSSCC
T ss_pred EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--eCCCCCceEEEEeC-------CEEEEecCCCCEEEEEECCCCc
Confidence 89999444555555567788999998764322221 11112224556543 3455555556778888876654
Q ss_pred ceEEEee-----------cC--------------CceEEEE-----------ECCCC--------------CcEEEEEec
Q psy17342 304 PVHSFNE-----------FR--------------DYVMDVQ-----------WSPIN--------------PALFATVEV 333 (401)
Q Consensus 304 ~~~~~~~-----------~~--------------~~v~~v~-----------~~~~~--------------~~~l~~~~~ 333 (401)
....+.. |. +....++ ..|.| ..+|+.+ .
T Consensus 246 ~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~ 324 (619)
T 3s94_A 246 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-R 324 (619)
T ss_dssp CCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-E
T ss_pred ccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-c
Confidence 3322211 10 0000011 11211 1122222 3
Q ss_pred CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE-ecCCcEEEEEeccCc
Q psy17342 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG-DEKGAITMFDVGEVG 391 (401)
Q Consensus 334 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~ 391 (401)
.+.|+..++...... ........-..+..++|++.+..|+.+ ...+.|+.+++....
T Consensus 325 ~~~i~~i~l~~~~~~-~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~ 382 (619)
T 3s94_A 325 RTDLRRISLDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG 382 (619)
T ss_dssp SSCEEEEESSSTTCC-CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccceEEEecCCCccc-eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc
Confidence 456777777654322 122222333457889999865555544 456788888887643
No 291
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.05 E-value=0.0037 Score=52.05 Aligned_cols=265 Identities=11% Similarity=0.085 Sum_probs=160.3
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
+..|.|-|+.++....+.... --+.-.+|.. +.+|.-. ..++.|+|+++.+.... ......|.-=.|
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~-~ViALra-g~~LQiFnletK~klks-------~~~~e~VvfWkW 114 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKA-------HTMTDDVTFWKW 114 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEE-------EECSSCEEEEEE
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCc-cEEEEec-CCeEEEechHHhhhhcc-------eecCCccEEEEe
Confidence 458999999976665433332 2334458854 6776654 68899999998875422 122456666666
Q ss_pred eecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEEe
Q psy17342 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSAC 248 (401)
Q Consensus 176 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~~ 248 (401)
-.+. .|+-.+ +..|..|++.....|.+.+..... + ....|..-..+ ++.++++..+ -.|.+.+|.
T Consensus 115 --is~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~-L--~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLYS 186 (365)
T 2xzh_A 115 --ISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYS 186 (365)
T ss_dssp --CSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGG-G--TTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred --cCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchh-c--ccceEEEEEEC-CCCCEEEEEeEeccCCccceeEEEEe
Confidence 3333 344433 347999999865566666555431 1 24566666777 6777655432 236788998
Q ss_pred CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCC---CceE-----EEe-e---cCC
Q psy17342 249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKEN---KPVH-----SFN-E---FRD 313 (401)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~---~~~~-----~~~-~---~~~ 313 (401)
.+.. ....++||......+...-+. ....+|+.+.. .+++.|-++... .+.. .+. . ...
T Consensus 187 ~er~---~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~D 260 (365)
T 2xzh_A 187 VDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 260 (365)
T ss_dssp TTTT---EEEEECCSEEEEEEECCTTCS---SCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTC
T ss_pred eccc---ccceeeeeeeeeEEEecCCCC---CCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCC
Confidence 8643 456788888776555543221 10345554443 258888888432 1111 111 1 133
Q ss_pred ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
-..++..++.-. ++..-+.-|.|++||+.++..+..-+. ....|...+-+....=++.....|.|.--.+++..
T Consensus 261 FPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrI---S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 261 FPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp CEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred ceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEecc---CCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 445777777765 778888999999999999986644332 23445544544443445555688888887777653
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.00049 Score=57.73 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=104.2
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----C--CCceeeeec---CccCCCCCCCcEEEEEe--
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----H--EGPVVGLSS---HRAQGHIDFSHLYLTSS-- 289 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----~--~~~v~~i~~---~~~~~~~~~~~~l~s~~-- 289 (401)
-..++.|++.++.++++.-..+.|..|+........+ .+.+ . ...+..|.+ .|. +.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~------grL~vv~~~~ 86 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS------KRLFAVMKNA 86 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC------CEEEEEEEET
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC------CcEEEEEccc
Confidence 3456788833444444445799999999864322122 2222 1 113578888 576 57777543
Q ss_pred -----------CCCeEEEEEee---CCCceEEEee--c-----------CCceEEEEECCCCCcEEEEEecC-CEEEEEe
Q psy17342 290 -----------YDWSVKLWNIK---ENKPVHSFNE--F-----------RDYVMDVQWSPINPALFATVEVA-GRVDLWN 341 (401)
Q Consensus 290 -----------~d~~i~iwd~~---~~~~~~~~~~--~-----------~~~v~~v~~~~~~~~~l~~~~~d-~~i~iwd 341 (401)
.+..|..||+. +++.+....- . ......++..++|. ..++++.. +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence 26789999998 7887766542 1 12488999999997 67778777 7776666
Q ss_pred CCCCCCCcceEEee---cCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 342 LNLDTEVPATSAIV---EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 342 ~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.... ....+.... ......+.++++|+|+.|++....|.+..+|+.+
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 6533 222221111 1123467899999999998887799999999874
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.0073 Score=52.13 Aligned_cols=234 Identities=14% Similarity=0.098 Sum_probs=117.7
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCC---CCceEEEEec
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKF---NPYLILGGTY 139 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~g~~ 139 (401)
....++|.|+|+ |+++. ..+.|.+++ . ++....... ........|+|+|+ +..+.++-..
T Consensus 32 ~P~~ia~~pdG~-l~V~e----------~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAE----------RPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CEEEEEECTTSC-EEEEE----------TTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCCe-EEEEe----------CCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 467899999997 55556 469999998 2 331111111 12457899999997 4344444433
Q ss_pred C-----CeEEEEECCCCCCC---ceee-ccc-cccCCCCcEEEEEEeecCCceEEEEEeCC-------------CcEEEe
Q psy17342 140 S-----GQIVLWDTRVQKKT---PVHR-TPL-SVMAHTHPVFCMSVIGTQNAHNLISISND-------------GRLCSW 196 (401)
Q Consensus 140 d-----g~v~iw~~~~~~~~---~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~~w 196 (401)
. +.|..++....... .... .+. ....|. ...++| .+++.+.++.+.. |.|.-+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 2 56778877643210 0111 110 011233 357888 8899766664321 445555
Q ss_pred eccCCCCCc-c--------ccccccccccCCccceEEEEeccCCCCeEEEEcCCce--------EEEEeCCCC-------
Q psy17342 197 SLEMLSSPQ-E--------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN--------VYSACRHGN------- 252 (401)
Q Consensus 197 d~~~~~~~~-~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--------i~~~~~~~~------- 252 (401)
+... ..+. . ..++. ..++ .....++|+|.++.++++-..... |.+...-.+
T Consensus 175 ~~dG-~~p~~npf~~~~~~~~~i~---a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 175 TPEG-EPAPGNPFLGRRGARPEVY---SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp CTTS-SBCTTCTTTTCTTSCTTEE---EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred cCCC-CCCCCCcccCCCCCCccEE---EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 5432 0000 0 00000 0011 235678888435555544332222 433322110
Q ss_pred -------CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc------eEEEeecCCceEEEE
Q psy17342 253 -------KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP------VHSFNEFRDYVMDVQ 319 (401)
Q Consensus 253 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~v~ 319 (401)
...++..+..| .....+++. . +.++++.-..+.|...++..... ...+-.....+..++
T Consensus 250 g~~~~~~~~~p~~~~~~~-~ap~G~~~~-~------G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 321 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWPQG-FPPGNLAFF-R------GDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQ 321 (352)
T ss_dssp SCCCCTTSCCCSEECTTC-CCEEEEEEE-T------TEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEE
T ss_pred CCCCCCCCcCCeEecCCC-CCCcceEEE-C------CEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEE
Confidence 01122233222 234556662 2 56776666677888888765432 122222245788999
Q ss_pred ECCCCCcEEEEE
Q psy17342 320 WSPINPALFATV 331 (401)
Q Consensus 320 ~~~~~~~~l~~~ 331 (401)
+.|+|. ++++.
T Consensus 322 ~~pdG~-lyv~~ 332 (352)
T 2ism_A 322 VGPDGA-LYVTT 332 (352)
T ss_dssp ECTTSC-EEEEE
T ss_pred ECCCCc-EEEEE
Confidence 999996 55444
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.94 E-value=0.0068 Score=51.38 Aligned_cols=199 Identities=10% Similarity=0.125 Sum_probs=115.5
Q ss_pred CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc---CCCCe--EEEE-c-C--CceEEEEeCC
Q psy17342 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ---NDVNN--FVVG-C-E--DGNVYSACRH 250 (401)
Q Consensus 180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~--l~~~-~-~--d~~i~~~~~~ 250 (401)
....++.....+-+.+||+. ++....+.. ..+..+..-| -.++. ++.+ . . ++.|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~~---------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD--GKMLHSYNT---------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT--SCEEEEECC---------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcCC--CcEEEEccC---------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 44567777788899999994 232222211 2344444441 11221 3333 3 3 5789999774
Q ss_pred CCCCCceeeecC------CC-Cceeeeec--CccCCCCCCC-cEEEEEeCCCeEEEEEee-------CCCceEEEeecCC
Q psy17342 251 GNKAGNVECYEG------HE-GPVVGLSS--HRAQGHIDFS-HLYLTSSYDWSVKLWNIK-------ENKPVHSFNEFRD 313 (401)
Q Consensus 251 ~~~~~~~~~~~~------~~-~~v~~i~~--~~~~~~~~~~-~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~ 313 (401)
.... .+..+.. .. ..++.+++ +|.. + .+++....+|.+..|++. +.+.+++|.. .+
T Consensus 108 p~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~-----g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs 180 (355)
T 3amr_A 108 GKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKT-----GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS 180 (355)
T ss_dssp TTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTT-----CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred CCCC-ceeeccccccCcCCCCCCeeEEEEEecCCC-----CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence 3222 2333311 11 45667777 6643 3 367777788999999983 3456777776 45
Q ss_pred ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC--CCcceEEeecC---CCCeEEEEe--cCCCc-EEEEEe-cCCcEEE
Q psy17342 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDT--EVPATSAIVEG---APALSRVTW--TPNGT-QLCVGD-EKGAITM 384 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~---~~~v~~~~~--s~~g~-~l~~~~-~dg~v~i 384 (401)
.+-.+...+... .|+.+-++.-|..++..... ....+. ..+. ...+..|++ .++++ +|++++ .+.+..+
T Consensus 181 q~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~-~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 181 QTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVID-RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp CEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEE-EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEE-EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 788899998776 57777788666666654222 111121 1222 235778888 45555 565555 6778999
Q ss_pred EEeccCccceeeeee
Q psy17342 385 FDVGEVGIACLKFIT 399 (401)
Q Consensus 385 w~~~~~~~~~l~~~~ 399 (401)
||.+... +.+..|.
T Consensus 259 ydr~~~~-~~vg~f~ 272 (355)
T 3amr_A 259 YDRQGKN-KYVADFR 272 (355)
T ss_dssp EESSTTC-CEEEEEE
T ss_pred EECCCCC-cEEEEEE
Confidence 9996321 4555543
No 295
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.93 E-value=0.0074 Score=51.72 Aligned_cols=198 Identities=11% Similarity=0.078 Sum_probs=107.5
Q ss_pred EEEEEEeecCCceEEEEEe------------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCC-eE
Q psy17342 170 VFCMSVIGTQNAHNLISIS------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVN-NF 235 (401)
Q Consensus 170 v~~~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~l 235 (401)
..++.. .++|..+++++ .+|.|.++|++........+.+..............+.+.+ .++. +|
T Consensus 52 ~EDi~~--~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEE--CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEE--cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345555 56665555542 68999999987422222222222100111223455566542 1332 34
Q ss_pred EEE-cC--CceEEEEeCCCCC--CCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeC---C------------CeE
Q psy17342 236 VVG-CE--DGNVYSACRHGNK--AGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSY---D------------WSV 294 (401)
Q Consensus 236 ~~~-~~--d~~i~~~~~~~~~--~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~---d------------~~i 294 (401)
+++ .. +..|.+|++.... ...+..+.+. -...+.+.+.++ +.++++... | ..-
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~------G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP------EHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET------TEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC------CCEEecCCcEeCCcccccchhhccCCcc
Confidence 433 33 4567777655322 2223344332 234678888887 676666541 1 223
Q ss_pred EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEE
Q psy17342 295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQL 373 (401)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 373 (401)
++|.+..++. ..+...-...+.++|+|+++.++++-+..+.|..|++.....+...+. .......-.+++.+ +|++.
T Consensus 204 ~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~-~~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 204 FVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-LSFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp EEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSEEEEEEECTTTCCEE
T ss_pred EEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE-EeCCCCCceEEEeCCCCcEE
Confidence 3444433433 333332456789999999987777777889999999974332222221 12245567889998 59877
Q ss_pred EEEe
Q psy17342 374 CVGD 377 (401)
Q Consensus 374 ~~~~ 377 (401)
+++.
T Consensus 282 va~~ 285 (355)
T 3sre_A 282 VGCH 285 (355)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7664
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.91 E-value=2.6e-05 Score=73.98 Aligned_cols=223 Identities=9% Similarity=-0.044 Sum_probs=121.3
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ 142 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~ 142 (401)
..+..++|++.+..|..+.. ..+.|..+++... ................|++.+.+.+++++-...+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~---------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp TTCCCCEEETTTTEEEECCT---------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred cceEEEccccccCeEEEEec---------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence 34667889887777776652 5678888888741 11111111112235567887656566666556788
Q ss_pred EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-C-CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-D-GRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
|.+.++.......+. .........+++ .+.+..|+.+.. . +.|..+++.. .....+ +. ..-.
T Consensus 477 I~v~d~dg~~~~~l~------~~~~~~P~giav--Dp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l-~~-----~~l~ 540 (699)
T 1n7d_A 477 VSVADTKGVKRKTLF------REQGSKPRAIVV--DPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSL-VT-----ENIQ 540 (699)
T ss_dssp EEEEBSSSCCEEEEC------CCSSCCCCCEEC--CSSSSCCEECCCSSSCCEEBCCSSS--CCCCEE-SC-----SSCS
T ss_pred EEEEecCCCceEEEE------eCCCCCcceEEE--ccCCCcEEEcccCCCCeEEEEeCCC--CCeeEE-Ee-----CCCC
Confidence 999998765432111 111223456777 665554444332 2 6777777653 111111 00 0123
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 300 (401)
....|+++|..+.++++-...+.|..+++.+.....+............|++.. ..++++....+.|..+|..
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-------~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-------TEEEEECSTTTCEEEEETT
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-------CEEEEEeCCCCeEEEEEcc
Confidence 456789994445556666677889999987543222211111112233455433 3566666667889999877
Q ss_pred CCCceEEEeecCCceEEEEE
Q psy17342 301 ENKPVHSFNEFRDYVMDVQW 320 (401)
Q Consensus 301 ~~~~~~~~~~~~~~v~~v~~ 320 (401)
+++.+..+.........|++
T Consensus 614 ~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 614 TGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TEEEEECCCTTCSSCCCCCB
T ss_pred CCCceEEeecCCCCCcEEEE
Confidence 77666555432223344443
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.0044 Score=55.53 Aligned_cols=253 Identities=10% Similarity=0.112 Sum_probs=136.5
Q ss_pred ceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEE-------eCCCCceEEE
Q psy17342 67 NVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCF-------AKFNPYLILG 136 (401)
Q Consensus 67 ~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~~ 136 (401)
....|+|+| +...|.++.. ..+.|++.|.+++......... .......++| .+++..++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~---------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYD---------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEE---------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEEC---------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 467899999 4556666662 3467888898854433211111 1124889999 9988545555
Q ss_pred EecCC------eEEEEECCC-CCCCc-e-eeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeecc-------
Q psy17342 137 GTYSG------QIVLWDTRV-QKKTP-V-HRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLE------- 199 (401)
Q Consensus 137 g~~dg------~v~iw~~~~-~~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~------- 199 (401)
-..++ .|.+.+... +.... . ... +.... ....++. ++ ++.++++-..++.|..+|+.
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~-v~~~~---~p~giav--dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQL-IAAYK---QCNGATI--HPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEE-EEEES---CCCCEEE--CTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred eCCCCCcccCceEEEEecCCCCceeeccccee-eccCC---CceEEEE--cCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 43331 255665333 12110 0 000 10011 2245666 77 45556666678889999987
Q ss_pred CCCC--Ccccc------ccccccccCCccceEEEEeccCCCCe-EEEEcCCceEEEEeCCCCCCCc--eeeecCC---CC
Q psy17342 200 MLSS--PQETR------DLQYNNKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSACRHGNKAGN--VECYEGH---EG 265 (401)
Q Consensus 200 ~~~~--~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~---~~ 265 (401)
.... +.... .+. ..+.......++|+ ++++. +++-+..+.|+.++........ ...+-+. .+
T Consensus 285 tg~~~tp~~~~~~g~~~~l~---~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G 360 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLF---TIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSG 360 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEE---ECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCC
T ss_pred CceeecccccccccccceeE---ecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCc
Confidence 3221 00000 111 01123456789999 78885 5555677889987765432111 0122111 11
Q ss_pred ------------cee-eeecC-------ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------
Q psy17342 266 ------------PVV-GLSSH-------RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------------- 312 (401)
Q Consensus 266 ------------~v~-~i~~~-------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------- 312 (401)
... .+... +. +.++++-....+|+.++ .++ .+.++.+..
T Consensus 361 ~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~------g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~ 432 (496)
T 3kya_A 361 YRDDVGTEARMNNPCQGVFVKNPDYTGEEE------YDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGT 432 (496)
T ss_dssp CBCCBGGGCBCSSEEEEEEEECTTCCSSCC------EEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCC
T ss_pred ccCCcccccccCCCeEEEEEccccccccCC------CeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCcccccc
Confidence 112 22332 22 46666666678888888 345 445554320
Q ss_pred -----------CceEEEEECCC-CCcEEEEEecCCEEEEEeCCCCCC
Q psy17342 313 -----------DYVMDVQWSPI-NPALFATVEVAGRVDLWNLNLDTE 347 (401)
Q Consensus 313 -----------~~v~~v~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 347 (401)
.....|+++++ +. ++++=.....|+.+++.....
T Consensus 433 ~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 433 DDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC-
T ss_pred CCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcc
Confidence 13568888886 54 666666778888888876443
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.85 E-value=0.032 Score=56.04 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=62.1
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-----CceEEEEec-CCeEEEEECCCCCCCceeeccccccCCCCc
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-----PYLILGGTY-SGQIVLWDTRVQKKTPVHRTPLSVMAHTHP 169 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 169 (401)
.+.+.+++++.++........-...|.|+++.|.. ..+++.|.. |++|+|+++...+....+. + .....
T Consensus 531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~--L---~~~~~ 605 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM--L---GGEII 605 (1158)
T ss_dssp TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE--C---CSSCC
T ss_pred CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE--C---CCCCC
Confidence 46677777764432222222346789999998643 258888886 9999999998644322211 1 11234
Q ss_pred EEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342 170 VFCMSVIGTQNAHNLISISNDGRLCSWSLE 199 (401)
Q Consensus 170 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~ 199 (401)
..++.+.......+|..|-.||.+..+.++
T Consensus 606 p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 606 PRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 455555333455788899999998777665
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.021 Score=53.34 Aligned_cols=230 Identities=7% Similarity=-0.055 Sum_probs=138.8
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDL 210 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 210 (401)
.++++ ..+.|+..+++....... +.+ ..-.....++| .+. +..+++-..++.|..+++... .......
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~----~~~-~~~~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~- 76 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA----IPL-TGVKEASALDF--DVTDNRIYWTDISLKTISRAFMNGS-ALEHVVE- 76 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE----CCC-CSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC-
T ss_pred EEEEE--eCCcEEEEECCCCCcceE----EEc-CCCCceEEEEE--ECCCCEEEEEECCCCeEEEEECCCC-CcEEEEe-
Confidence 34443 467899999986543211 111 22345778998 654 445555566788888887631 1111111
Q ss_pred ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE-e
Q psy17342 211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-S 289 (401)
Q Consensus 211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~ 289 (401)
. .......+++.+..++++++-...+.|.+.++.+..... .....-.....|++.|.. +.++.+- +
T Consensus 77 -~-----g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~iavdp~~-----G~lY~tD~g 143 (628)
T 4a0p_A 77 -F-----GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--LVWKDLDSPRALALDPAE-----GFMYWTEWG 143 (628)
T ss_dssp -S-----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--EECSSCCCEEEEEEETTT-----TEEEEEECS
T ss_pred -C-----CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--EEeCCCCCcccEEEccCC-----CeEEEeCCC
Confidence 0 113456788874455566666778899999987543211 122333456899999874 5555554 2
Q ss_pred CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342 290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN 369 (401)
Q Consensus 290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 369 (401)
..+.|...++... ....+...-.....++++++++.++++-...+.|...|+..... ..+. ........+++..
T Consensus 144 ~~~~I~r~~~dG~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~- 217 (628)
T 4a0p_A 144 GKPKIDRAAMDGS-ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ- 217 (628)
T ss_dssp SSCEEEEEETTSC-SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-
T ss_pred CCCEEEEEeCCCC-ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-
Confidence 2567777777543 33333333557889999998776777777788999999976443 2222 2233455777764
Q ss_pred CcEEEEEecCCcEEEEEeccCc
Q psy17342 370 GTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 370 g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
+..+++-...+.|...|..+++
T Consensus 218 ~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 218 DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEecCCCCEEEEEECCCCC
Confidence 4445555557788888876663
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.81 E-value=0.022 Score=53.16 Aligned_cols=296 Identities=7% Similarity=-0.080 Sum_probs=152.9
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
....|++.|.+..|..+.++ ..+.|...+++ +.....+....-.....|++.+++.++.++-...+.|...
T Consensus 128 ~P~~Iavdp~~g~ly~tD~g--------~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 128 QPRAIALDPSSGFMYWTDWG--------EVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp CCCCEEEETTTTEEEEEECS--------SSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCceEEEecCCCeEEEeccC--------CCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 35678888876666666631 24677777776 3333333222345678999999776666666667788888
Q ss_pred ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc---------ccccccc-
Q psy17342 147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD---------LQYNNKQ- 216 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---------~~~~~~~- 216 (401)
+++........ .+......+|++ ..+ ..+++-...+.|...|..++........ +.....+
T Consensus 199 ~~dG~~~~~~~------~~~~~~P~gi~~--~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp 269 (619)
T 3s94_A 199 NLDGTNRQAVV------KGSLPHPFALTL--FED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP 269 (619)
T ss_dssp SSSCCEEC---------------CCCEEE--SSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSC
T ss_pred cCCCCccEEEE------eCCCCCceEEEE--eCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCC
Confidence 88764332111 111112245665 333 4444444566777777654322111000 0000000
Q ss_pred -------CCccceEEEEeccC-----------------C--------CCeEEEEcCCceEEEEeCCCCCCCceeeecCCC
Q psy17342 217 -------TKNLAVLSLAFPQN-----------------D--------VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE 264 (401)
Q Consensus 217 -------~~~~~v~~~~~~~~-----------------~--------~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 264 (401)
.....+..+++..+ + ..+|+.+ ..+.|+..++.......+......-
T Consensus 270 ~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l 348 (619)
T 3s94_A 270 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDI 348 (619)
T ss_dssp CCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCC
T ss_pred CccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEecccc
Confidence 00111111221100 1 1122322 3345565565533221111101112
Q ss_pred CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
..+..+++.+.. +.++++-...+.|+.+++........+...-.....+++.+.+..++++-+..+.|.+.++..
T Consensus 349 ~~~~~ld~d~~~-----~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 349 RHAIAIDYDPVE-----GYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp SSEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEEEcCC-----CeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 345678888763 456666556788888887654333333322345678999876656777777788999999875
Q ss_pred CCCCcceEEeecCCCCeEEEEecCCCcEEEEEec--CCcEEEEEecc
Q psy17342 345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE--KGAITMFDVGE 389 (401)
Q Consensus 345 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~v~iw~~~~ 389 (401)
.. ...+. ...-.....+++.|....|+.... .+.|...++..
T Consensus 424 ~~-~~~l~--~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG 467 (619)
T 3s94_A 424 TM-RKILI--SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG 467 (619)
T ss_dssp CS-CEEEE--CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred Ce-EEEEE--ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC
Confidence 43 22221 223456789999987444444432 34565555543
No 301
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.81 E-value=0.0026 Score=56.63 Aligned_cols=200 Identities=8% Similarity=0.002 Sum_probs=113.2
Q ss_pred cEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----c
Q psy17342 169 PVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----G 242 (401)
Q Consensus 169 ~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~ 242 (401)
....++| .++ ...|+.+...+.|+.++..... .. .+. ........++++ ++++++++.... .
T Consensus 140 ~P~gvav--d~~s~~g~Lyv~D~~~~I~~id~~~g~-v~---~~~-----~~~~~P~giavd-~dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMF--DPNSNYDDLYWVGQRDAFRHVDFVNQY-VD---IKT-----TNIGQCADVNFT-LNGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEE--CTTTTTCEEEEECBTSCEEEEETTTTE-EE---EEC-----CCCSCEEEEEEC-TTCCEEEEECCSCTTSE
T ss_pred CCceEEE--ccccCCCEEEEEeCCCCEEEEECCCCE-EE---Eee-----cCCCCccEEEEC-CCCCEEEEcCCCCcccc
Confidence 3457888 663 3344444444889999875311 11 111 123457899999 788744443321 1
Q ss_pred eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEE
Q psy17342 243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQW 320 (401)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~ 320 (401)
.+...+...... ....+. .......++++|.. +.++++-..++.|+.+|..+++....+.. ....-..++|
T Consensus 208 gv~~~~~~~~~~-~~~~~~-~~~~P~giavd~~~-----G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 208 GIYLFTRASGFT-ERLSLC-NARGAKTCAVHPQN-----GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp EEEEECGGGTTC-CEEEEE-ECSSBCCCEECTTT-----CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEE
T ss_pred eEEEEECCCCee-cccccc-ccCCCCEEEEeCCC-----CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEE
Confidence 233333321111 011121 22344678888843 66776666678899999876665233322 1223357999
Q ss_pred CCCCCcEEEEEecCCEEEEEeCCC--CCCC--cceEEeec------------CCCCeEEEEe---------cCCCcEEEE
Q psy17342 321 SPINPALFATVEVAGRVDLWNLNL--DTEV--PATSAIVE------------GAPALSRVTW---------TPNGTQLCV 375 (401)
Q Consensus 321 ~~~~~~~l~~~~~d~~i~iwd~~~--~~~~--~~~~~~~~------------~~~~v~~~~~---------s~~g~~l~~ 375 (401)
+|+++.++++-...+.|+.+++.. +... ..+..... .-.....+++ .++|.++++
T Consensus 281 dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva 360 (433)
T 4hw6_A 281 HPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC 360 (433)
T ss_dssp CTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE
Confidence 999975667777778999988753 2211 11111000 0123567898 677777777
Q ss_pred EecCCcEEEEEe
Q psy17342 376 GDEKGAITMFDV 387 (401)
Q Consensus 376 ~~~dg~v~iw~~ 387 (401)
-...+.|+.++.
T Consensus 361 D~~n~~I~~~~~ 372 (433)
T 4hw6_A 361 DRDSHTVRVLTP 372 (433)
T ss_dssp ETTTTEEEEECT
T ss_pred ECCCCEEEEECC
Confidence 667778888874
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.77 E-value=0.0051 Score=52.14 Aligned_cols=204 Identities=7% Similarity=0.044 Sum_probs=114.3
Q ss_pred ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee--cCCce---EEEEEeC---CCcEEEeeccCCCC
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG--TQNAH---NLISISN---DGRLCSWSLEMLSS 203 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~s~~~---dg~i~~wd~~~~~~ 203 (401)
.+++.....+-+.+||+ .++.... + ..+.++.+...+ .-.+. ++++... +++|.+|++.....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~------~--~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHS------Y--NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEE------E--CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEE------c--cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 35555567788999999 4443211 1 124566666522 11222 2333333 57899998742122
Q ss_pred CccccccccccccCCccceEEEEe--ccCCCC-eEEEEcCCceEEEEeCCCC-----CCCceeeecCCCCceeeeecCcc
Q psy17342 204 PQETRDLQYNNKQTKNLAVLSLAF--PQNDVN-NFVVGCEDGNVYSACRHGN-----KAGNVECYEGHEGPVVGLSSHRA 275 (401)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~~~~ 275 (401)
......-...........+..+++ +|..+. ++++...+|.+..|++... ..+.++.+.- .+.+..+...+.
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 211110000000001145666776 643454 6788888999999887432 2234556553 356778888877
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEEee-----CCCceEEEee-c-CCceEEEEE--CCCCC-cEEEEEecCCEEEEEeCC-C
Q psy17342 276 QGHIDFSHLYLTSSYDWSVKLWNIK-----ENKPVHSFNE-F-RDYVMDVQW--SPINP-ALFATVEVAGRVDLWNLN-L 344 (401)
Q Consensus 276 ~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~-~-~~~v~~v~~--~~~~~-~~l~~~~~d~~i~iwd~~-~ 344 (401)
...|..+-++.-|..++.+ +++.+..+.. + ...+..|++ .++++ ++|+++-.++.+.+||.. +
T Consensus 191 ------~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 191 ------YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp ------TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred ------CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 5788888888666666644 2334433321 1 236788887 45555 566666577899999997 4
Q ss_pred CCCCcce
Q psy17342 345 DTEVPAT 351 (401)
Q Consensus 345 ~~~~~~~ 351 (401)
.+.+..+
T Consensus 265 ~~~vg~f 271 (355)
T 3amr_A 265 NKYVADF 271 (355)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 4444444
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.72 E-value=0.0034 Score=52.84 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=115.0
Q ss_pred ceEEEEe-cC-----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccC
Q psy17342 132 YLILGGT-YS-----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEM 200 (401)
Q Consensus 132 ~~l~~g~-~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~ 200 (401)
.+++.|+ .+ ..+.+||..+.+-......+ ........+.. ++..++.|+.+ ..+.+||+.+
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT----RKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTA 87 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCCCS----SCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC----hhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCC
Confidence 4555555 22 36888888766432221111 11111122222 56677777654 3588888765
Q ss_pred CCC--CccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342 201 LSS--PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273 (401)
Q Consensus 201 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 273 (401)
... -.....+.. .......+.+ ++.+++.|+.+ ..+.+||....+-..+..+......-..+.+
T Consensus 88 ~~~~~W~~~~~~p~-----~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 158 (301)
T 2vpj_A 88 DEDGVWYSVAPMNV-----RRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA- 158 (301)
T ss_dssp CTTCCCEEECCCSS-----CCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-
T ss_pred CCCCeeEECCCCCC-----CccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-
Confidence 320 111111111 1112222222 45677777643 3578888765443222222211111112222
Q ss_pred ccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEe
Q psy17342 274 RAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWN 341 (401)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd 341 (401)
+ +.+++.|+.+ ..+.+||+.+.+-... +.........+.+ ++ .+++.|+.+ ..+.+||
T Consensus 159 -~------~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 159 -S------GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp -T------TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEE
T ss_pred -C------CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEe
Confidence 2 5777777754 3588888766432211 1111111122222 34 377777764 4688999
Q ss_pred CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~ 399 (401)
+.+.+-......+ ........+. .++++++.|+.+ ..|.+||+++.+.+.+..++
T Consensus 229 ~~~~~W~~~~~~p-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 288 (301)
T 2vpj_A 229 IRTDSWTTVTSMT-TPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288 (301)
T ss_dssp TTTTEEEEECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCcEEECCCCC-CcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence 9875422111100 0111112222 377788888765 35889999888766665544
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.68 E-value=0.0064 Score=51.07 Aligned_cols=164 Identities=13% Similarity=0.053 Sum_probs=97.7
Q ss_pred CcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccc-cCCccceEEEEe---ccCCCCeEEEEc---
Q psy17342 168 HPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNK-QTKNLAVLSLAF---PQNDVNNFVVGC--- 239 (401)
Q Consensus 168 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~---~~~~~~~l~~~~--- 239 (401)
-.-.+++| .+....|..++ ..++|..|+..... .... .+..... ......+..|.+ . +++.++++..
T Consensus 13 ~yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~~~s~~g~~~~~~sGl~~~~~D-~~grL~vv~~~~~ 87 (334)
T 2p9w_A 13 LTPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VIDGASSNGDGEQQMSGLSLLTHD-NSKRLFAVMKNAK 87 (334)
T ss_dssp CCCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCTTTCCSSCCSEEEEEEEESSSS-SCCEEEEEEEETT
T ss_pred cCCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecCCccccCCCcceeeEEEEeccC-CCCcEEEEEcccc
Confidence 33446788 55445555555 78999999986311 1111 2211000 011234578899 5 5566666543
Q ss_pred ----------CCceEEEEeCC---CCCCCceeeecC-----------CCCceeeeecCccCCCCCCCcEEEEEeCC-CeE
Q psy17342 240 ----------EDGNVYSACRH---GNKAGNVECYEG-----------HEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSV 294 (401)
Q Consensus 240 ----------~d~~i~~~~~~---~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i 294 (401)
.+..+..+|+. +.+......+.. -......++..+. ++..++++.. +.|
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~------GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD------GNSYVAFALGMPAI 161 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT------SCEEEEEEESSCEE
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC------CCEEEeCCCCCCeE
Confidence 25779999987 333222222221 1134788999988 7899988887 777
Q ss_pred EEEEeeCCCceEEEeec------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 295 KLWNIKENKPVHSFNEF------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 295 ~iwd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
...+.. ++.+..+... ....+.|+++|++..+++..+ .|.|..+|+..
T Consensus 162 ~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 162 ARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp EEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred EEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 776654 3334433211 123679999999985555445 99999999984
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=0.022 Score=49.16 Aligned_cols=240 Identities=12% Similarity=0.055 Sum_probs=124.0
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeCC---
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISND--- 190 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~d--- 190 (401)
-.....++|.|++ +++++ ...|.|.+++ .+........+ ...........|++ +|+ +...++-...
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~-v~~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELS-VYHRGESGLLGLAL--HPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECC-CCCSTTCSEEEEEE--CTTTTTSCEEEEEEEECTTS
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecce-EeecCCCCceeEEE--CCCCCCCCEEEEEEecCCCC
Confidence 3457899999988 55554 5679999998 33322221111 11222456788999 777 4444443332
Q ss_pred --CcEEEeeccCCCCC---ccccc-cccccccCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342 191 --GRLCSWSLEMLSSP---QETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG 251 (401)
Q Consensus 191 --g~i~~wd~~~~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~ 251 (401)
+.|..++... ... ..... +.. ..........++|. +++.++++.+. .|.|..++..+
T Consensus 103 ~~~~v~r~~~~~-~~~~~~~~l~~~~p~--~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 103 LRNQVVRLRHLG-ERGVLDRVVLDGIPA--RPHGLHSGGRIAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp SEEEEEEEEECS-SCEEEEEEEEEEECC--CTTCCCCCCCEEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CccEEEEEEeCC-CCcCceEEEEEeCCC--CCCCCcCCceEEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 5677777653 111 11111 110 01111234588999 68865555322 25677777654
Q ss_pred CC-----------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE------EEEEeeCCC-----------
Q psy17342 252 NK-----------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV------KLWNIKENK----------- 303 (401)
Q Consensus 252 ~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i------~iwd~~~~~----------- 303 (401)
.- ......-.++. ....++|+|.. +.++++-.....+ .|.-+..+.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~-----g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKT-----GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTT-----CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred CCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCC-----CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 10 00011112333 34688999843 5666654433331 233333222
Q ss_pred -------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC---cceEEeecCCCCeEEEEecCCCcEE
Q psy17342 304 -------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV---PATSAIVEGAPALSRVTWTPNGTQL 373 (401)
Q Consensus 304 -------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l 373 (401)
++..+.. ......++| .+|. ++++.-..+.|...++...... ............+..+++.|||.++
T Consensus 253 ~~~~~~~p~~~~~~-~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 253 NDPRYRDPLYFWPQ-GFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALY 329 (352)
T ss_dssp CCTTSCCCSEECTT-CCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEE
T ss_pred CCCCCcCCeEecCC-CCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEE
Confidence 3333322 234567777 4554 6666666778888887654321 0111112234568999999999877
Q ss_pred EEEe
Q psy17342 374 CVGD 377 (401)
Q Consensus 374 ~~~~ 377 (401)
++..
T Consensus 330 v~~~ 333 (352)
T 2ism_A 330 VTTS 333 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.031 Score=50.10 Aligned_cols=253 Identities=9% Similarity=-0.027 Sum_probs=139.7
Q ss_pred CeeEEEEeCC-CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE-----eecCCceEEEEEeCCC-c
Q psy17342 120 PVLSCCFAKF-NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-----IGTQNAHNLISISNDG-R 192 (401)
Q Consensus 120 ~v~~~~~~~~-~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~l~s~~~dg-~ 192 (401)
....|+|.|. +.+++++-...+.|++.|+..+........ -.........++| -.++++..|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~---~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI---NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC---TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc---CccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 3568999983 445555554456788888887664422211 0112235677776 0145676555555443 2
Q ss_pred ------EEEeeccCCCCCcc-c--cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC-------CCCC-C
Q psy17342 193 ------LCSWSLEMLSSPQE-T--RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH-------GNKA-G 255 (401)
Q Consensus 193 ------i~~wd~~~~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~-------~~~~-~ 255 (401)
|.+++....+.... . ..+. .......++++|.++.++++-..++.|+.+|+. .... .
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred cccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 55555322111110 0 0111 112345778884466667777788899999986 3321 0
Q ss_pred c--------eee-ec-CCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeCCC-ce---EEEeec---C-----
Q psy17342 256 N--------VEC-YE-GHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKENK-PV---HSFNEF---R----- 312 (401)
Q Consensus 256 ~--------~~~-~~-~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~-~~---~~~~~~---~----- 312 (401)
+ ... +. +.....+.|+++|+ ++ ++++-.....|+.++..... .+ ..+.+. .
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~------G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG 364 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPT------GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTT------SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred ccccccccccceeEecCCCCCceEEEEcCC------CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence 0 111 11 22334578999998 67 45555567889997765322 11 233321 0
Q ss_pred -------CceE-EEEEC-------CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-----------c---C------
Q psy17342 313 -------DYVM-DVQWS-------PINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-----------E---G------ 357 (401)
Q Consensus 313 -------~~v~-~v~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~---~------ 357 (401)
.... .++.. +++. ++++-....+|+.++. ++ .+.++...- + +
T Consensus 365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a 441 (496)
T 3kya_A 365 VGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVA 441 (496)
T ss_dssp BGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred cccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhh
Confidence 1233 45554 4554 6777777889999984 33 222222110 0 0
Q ss_pred -CCCeEEEEecCC-CcEEEEEecCCcEEEEEeccC
Q psy17342 358 -APALSRVTWTPN-GTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 358 -~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~ 390 (401)
-.....++++++ |.++++=.....|+.++++..
T Consensus 442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 123678999997 776666666788999998764
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.63 E-value=0.0043 Score=52.37 Aligned_cols=237 Identities=8% Similarity=-0.040 Sum_probs=113.5
Q ss_pred ceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCc
Q psy17342 132 YLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQ 205 (401)
Q Consensus 132 ~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~ 205 (401)
.+++.|+. ...+.+||..+.+-......+. .......+.+ ++..++.|+.+ ..+.+||+.+.. -.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~ 83 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE----KRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDS-WY 83 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSC----CCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTE-EE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCc----ccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCe-EE
Confidence 45555654 3568888887765332211111 1111122222 56677777654 457778876421 11
Q ss_pred cccccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI 279 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 279 (401)
....++. .......+.+ ++.+++.|+.+ ..+.+||....+-..+..+......-..+.+ .
T Consensus 84 ~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~---- 149 (306)
T 3ii7_A 84 SKLGPPT-----PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N---- 149 (306)
T ss_dssp EEECCSS-----CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T----
T ss_pred ECCCCCc-----cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C----
Confidence 1111111 1111222222 45677777654 3478888775432222111111111111222 2
Q ss_pred CCCcEEEEEeC---------CCeEEEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCC
Q psy17342 280 DFSHLYLTSSY---------DWSVKLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLN 343 (401)
Q Consensus 280 ~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~ 343 (401)
+.+++.|+. -..+.+||+.+.+-... +......-..+.+ ++. +++.|+.+ ..+.+||+.
T Consensus 150 --~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 150 --GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp --TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETT
T ss_pred --CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCC
Confidence 567777664 24478888876532111 1111111122222 443 77777654 468899988
Q ss_pred CCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 344 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~ 399 (401)
+.+-...-..+. .......+.+ ++++++.|+.+ ..+.+||+.+.+...+..++
T Consensus 225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 754221111000 1111222333 77888888754 46899999998776665544
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.60 E-value=0.028 Score=48.45 Aligned_cols=244 Identities=11% Similarity=0.064 Sum_probs=120.2
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--Cc---eEEEecCCCeeEEEEeCC---CCceEEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TP---EFEFFCQSPVLSCCFAKF---NPYLILGG 137 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~---~~~~~~~~~v~~~~~~~~---~~~~l~~g 137 (401)
.....|+|.|+|+.|+++. ..|.|++++...... +. ............|+++|+ +..+.++-
T Consensus 18 ~~P~~i~~~pdG~~l~V~e----------~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITL----------RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SSEEEEEECSTTCCEEEEE----------TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEe----------CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 3478999999997566666 578999998542111 11 111112356789999995 43444443
Q ss_pred ec-------CCeEEEEECCCCCCCce-eecc---cc---ccCCCCcEEEEEEeecCCceEEEEEeCC-------------
Q psy17342 138 TY-------SGQIVLWDTRVQKKTPV-HRTP---LS---VMAHTHPVFCMSVIGTQNAHNLISISND------------- 190 (401)
Q Consensus 138 ~~-------dg~v~iw~~~~~~~~~~-~~~~---~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~d------------- 190 (401)
+. ...|..+++........ .+.. +. ...|. ...+.| .+++.+.++.+..
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~--~pdG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVF--DGKGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEE--CSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEE--CCCCcEEEEECCCCCCCccCCCCCCC
Confidence 22 23566666653321110 0000 00 11232 346888 8899766665442
Q ss_pred CcEEEeeccCCCCCc-c--------ccccccccccCCccceEEEEeccCCCCeEEEEcC-C--ceEEEEeCCCC------
Q psy17342 191 GRLCSWSLEMLSSPQ-E--------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-D--GNVYSACRHGN------ 252 (401)
Q Consensus 191 g~i~~wd~~~~~~~~-~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--~~i~~~~~~~~------ 252 (401)
|.|.-++... ..+. . ..++. ..++ .....++|+|.++.++++-.. + ..|.+...-..
T Consensus 164 g~I~ri~~dG-~~p~~npf~~~~~~~~~i~---a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~ 238 (353)
T 2g8s_A 164 GKLVRLTDQG-EIPDDNPFIKESGVRAEIW---SYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLA 238 (353)
T ss_dssp TEEEEEETTS-CCCTTCTTTTSTTSCTTEE---EECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTB
T ss_pred eEEEEECCCC-CCCCCCCCcCCCCCCccEE---EEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCc
Confidence 3566555542 1000 0 00000 0111 246788999324544443221 1 12322111000
Q ss_pred ---------------------CCCceeeecCCCCceeeeecCccCCCC-CCCcEEEEEeCCCeEEEEEeeCCCceEEEe-
Q psy17342 253 ---------------------KAGNVECYEGHEGPVVGLSSHRAQGHI-DFSHLYLTSSYDWSVKLWNIKENKPVHSFN- 309 (401)
Q Consensus 253 ---------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 309 (401)
...++..+..| .....+.+.+...-+ ..+.++++.-..+.|...++..++.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~ 317 (353)
T 2g8s_A 239 TWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI 317 (353)
T ss_dssp CSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred cCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc
Confidence 00111222222 344556665321000 005677776677888888887654433321
Q ss_pred --ecCCceEEEEECCCCCcEEEE
Q psy17342 310 --EFRDYVMDVQWSPINPALFAT 330 (401)
Q Consensus 310 --~~~~~v~~v~~~~~~~~~l~~ 330 (401)
.....+..+++.|+|. ++++
T Consensus 318 ~~~~~~rp~~v~~~pdG~-lyv~ 339 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGY-LYVL 339 (353)
T ss_dssp SGGGCCCEEEEEECTTSC-EEEE
T ss_pred ccCCCCceeEEEECCCCc-EEEE
Confidence 2234789999999997 5554
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.57 E-value=0.018 Score=49.93 Aligned_cols=145 Identities=10% Similarity=0.092 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--
Q psy17342 230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-- 303 (401)
Q Consensus 230 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-- 303 (401)
.++..++++- ++.||..++.... ..+.+... -..|..+..+|+ |.+||..+ +..|.|-.+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSps------G~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTS------GDLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTT------SSEEEEEC-SSEEEEEECCTTCSC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCC--cceEEecCcccccCceeEEEECCC------CCEEEEec-CCeEEEEEecCcccc
Confidence 4555555544 3788888876432 23333322 236788999999 78988887 6789998886321
Q ss_pred --------c--eEEEee------cCCceEEEEECCCCCc--EEEEEecCCEEEEEeCCCCCCCcc-eEE------eecCC
Q psy17342 304 --------P--VHSFNE------FRDYVMDVQWSPINPA--LFATVEVAGRVDLWNLNLDTEVPA-TSA------IVEGA 358 (401)
Q Consensus 304 --------~--~~~~~~------~~~~v~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~-~~~------~~~~~ 358 (401)
+ .+.+.. ...+|..+.|+|-+.. .|++-..|+.|++||+......+. +.. .....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV 179 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc
Confidence 1 122332 2467999999997532 688888999999999987444333 110 00112
Q ss_pred CCeEEEEecCCCcEEEEEe--cCCcEEE
Q psy17342 359 PALSRVTWTPNGTQLCVGD--EKGAITM 384 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~--~dg~v~i 384 (401)
..|.+++|.+++-.|...+ ..|.|+-
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 5688999999887777655 6676654
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.57 E-value=0.0036 Score=52.74 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=93.0
Q ss_pred CceEEEEEeCCC-----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeC
Q psy17342 180 NAHNLISISNDG-----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACR 249 (401)
Q Consensus 180 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~ 249 (401)
++..++.|+.++ .+.+||..+.. -.....+.. .......+.+ ++.+++.|+.++ .+.+||.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRD-----RRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSS-----CCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEET
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCc-----cccceEEEEE---CCEEEEEcCCCCCccCceEEEEeC
Confidence 566777776543 47778876421 111111111 1111222222 456777776543 4777887
Q ss_pred CCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-------CeEEEEEeeCCCceE--EEeecCCceEEEEE
Q psy17342 250 HGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-------WSVKLWNIKENKPVH--SFNEFRDYVMDVQW 320 (401)
Q Consensus 250 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~ 320 (401)
...+-..+..+.........+.+ . +.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+
T Consensus 132 ~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 203 (302)
T 2xn4_A 132 KSNEWFHVAPMNTRRSSVGVGVV--G------GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203 (302)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--T------TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CCCeEeecCCCCCcccCceEEEE--C------CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE
Confidence 65432222222111111111222 2 5677776642 347888876543211 11111111122222
Q ss_pred CCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC-----cEEEEEeccC
Q psy17342 321 SPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG-----AITMFDVGEV 390 (401)
Q Consensus 321 ~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~v~iw~~~~~ 390 (401)
++ .+++.|+.+ ..+.+||+.+.+-......... ......+. .++++++.|+.++ .|.+||+.+.
T Consensus 204 --~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 --NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred --CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 34 377777764 3688999876542211100000 11111222 3678888887654 4899999988
Q ss_pred ccceee
Q psy17342 391 GIACLK 396 (401)
Q Consensus 391 ~~~~l~ 396 (401)
+.+.+.
T Consensus 278 ~W~~~~ 283 (302)
T 2xn4_A 278 KWTVVS 283 (302)
T ss_dssp EEEECS
T ss_pred eEEECC
Confidence 766553
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.56 E-value=0.03 Score=47.70 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=116.4
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
...+.+|.|.+.+ ..+++| ..|.| +...+.++. -.... .........+.++.+ .+ +..++ ++.++.|..
T Consensus 35 ~~~~~~v~~~~~~-~~~~~G-~~g~i-~~s~DgG~t-W~~~~-~~~~~~~~~~~~i~~--~~-~~~~~-~g~~g~i~~-- 103 (327)
T 2xbg_A 35 TATILDMSFIDRH-HGWLVG-VNATL-METRDGGQT-WEPRT-LVLDHSDYRFNSVSF--QG-NEGWI-VGEPPIMLH-- 103 (327)
T ss_dssp SSCEEEEEESSSS-CEEEEE-TTTEE-EEESSTTSS-CEECC-CCCSCCCCEEEEEEE--ET-TEEEE-EEETTEEEE--
T ss_pred CCcEEEEEECCCC-cEEEEc-CCCeE-EEeCCCCCC-CeECC-CCCCCCCccEEEEEe--cC-CeEEE-EECCCeEEE--
Confidence 4578899987644 556655 56754 333333321 11100 111123457888888 54 44444 455564433
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG 277 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 277 (401)
....+..-...... ......+..+.+. +++..++++ .++.|+.-.-.+.. -.....++...+..+.+.|.
T Consensus 104 S~DgG~tW~~~~~~----~~~~~~~~~i~~~-~~~~~~~~~-~~g~v~~S~DgG~t--W~~~~~~~~~~~~~~~~~~~-- 173 (327)
T 2xbg_A 104 TTDGGQSWSQIPLD----PKLPGSPRLIKAL-GNGSAEMIT-NVGAIYRTKDSGKN--WQALVQEAIGVMRNLNRSPS-- 173 (327)
T ss_dssp ESSTTSSCEECCCC----TTCSSCEEEEEEE-ETTEEEEEE-TTCCEEEESSTTSS--EEEEECSCCCCEEEEEECTT--
T ss_pred ECCCCCCceECccc----cCCCCCeEEEEEE-CCCCEEEEe-CCccEEEEcCCCCC--CEEeecCCCcceEEEEEcCC--
Confidence 22212111111110 0112346677776 445555555 45655432211122 11222345567888999886
Q ss_pred CCCCCcEEEEEeCCCeEEE-EEeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-
Q psy17342 278 HIDFSHLYLTSSYDWSVKL-WNIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI- 354 (401)
Q Consensus 278 ~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 354 (401)
+.+++.+. ++.+.. .|- .++.-..+ ......+..+.+.+++. +++ ++.+|.+++.+...++.-..+...
T Consensus 174 ----~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~ 245 (327)
T 2xbg_A 174 ----GEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPL 245 (327)
T ss_dssp ----SCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTT
T ss_pred ----CcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCc
Confidence 56666654 454433 332 12222222 22356788999999986 444 456788877642212111111100
Q ss_pred ecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342 355 VEGAPALSRVTWTPNGTQLCVGDEKGAI 382 (401)
Q Consensus 355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v 382 (401)
......+..+.+.+++..++++. +|.|
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred ccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 11234588899998887776655 6656
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.47 E-value=0.032 Score=48.43 Aligned_cols=158 Identities=9% Similarity=0.084 Sum_probs=101.3
Q ss_pred ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec---CCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342 73 WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC---QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR 149 (401)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~ 149 (401)
.+.+|..++.+- ++.||.-++..+...+.+.... -..+..+..+|+| .+||..+ +..|.|-.+.
T Consensus 28 ~~~n~t~i~~a~-----------~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP 94 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-----------DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVP 94 (452)
T ss_dssp EETTTTEEEEEE-----------TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECC
T ss_pred EEcCCCEEEEEE-----------CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEec
Confidence 345777888887 7999999988554343333332 2368889999987 6777654 6789999988
Q ss_pred CCCCCce--------eecccccc----CCCCcEEEEEEeecCC---ceEEEEEeCCCcEEEeeccC-CCCCccccccccc
Q psy17342 150 VQKKTPV--------HRTPLSVM----AHTHPVFCMSVIGTQN---AHNLISISNDGRLCSWSLEM-LSSPQETRDLQYN 213 (401)
Q Consensus 150 ~~~~~~~--------~~~~~~~~----~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~ 213 (401)
.+..... ......+. ....+|..+.| +|- +..|++-..|+.|++||+.. ...|. .......
T Consensus 95 ~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlW--HPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 95 WGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLF--HPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp TTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEE--CTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred CccccCcccccccccceeEEEcCCcccCCCCceeEEEe--ccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 4322111 00011111 13578999999 554 45899999999999999985 22233 1111100
Q ss_pred --cccCCccceEEEEeccCCCCeEEEEc--CCceEEEE
Q psy17342 214 --NKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSA 247 (401)
Q Consensus 214 --~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~ 247 (401)
........|.+++|. .++-.|.+.+ ..|.|+-.
T Consensus 172 ~fg~d~~~~ev~S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 SFGLDARVNDITDLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEESCSSCCCEEEEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred ccCCCcccceEEEEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 012233678999999 6777787755 88999864
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.45 E-value=0.048 Score=47.48 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=162.7
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS 174 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (401)
....|.|-|+.++....+.... --+.-.+|.. +++|.-. ..++.|+|+++...... ......|.-=.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks-------~~~~e~VvfWk 112 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKA-------HTMTDDVTFWK 112 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEE-------EECSSCCCEEE
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcc-------eecCCCceEEE
Confidence 3458999999876665333332 3345568855 6666653 78999999998765422 12234565556
Q ss_pred EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEE
Q psy17342 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSA 247 (401)
Q Consensus 175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~ 247 (401)
|. .+. .|+-.+ +..|..|++.....|...+..... + ....|..-..+ ++.++++..+ -.|.+.+|
T Consensus 113 Wi--s~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~-L--~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 113 WI--SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp EE--ETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-G--TTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred ec--CCC-eEEEEc-CCeeEEecccCCCCchhheecchh-c--ccceEEEEEEC-CCCCeEEEEeecccCCcccceEEEe
Confidence 63 232 344333 458999999765566666555431 1 24566666777 6777765432 24678899
Q ss_pred eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCC---CceE-----EEe----ecC
Q psy17342 248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKEN---KPVH-----SFN----EFR 312 (401)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~---~~~~-----~~~----~~~ 312 (401)
..+.. ....++||......+...-+. ....+|+.+... +++.|-++... .+.. .+. ...
T Consensus 185 S~er~---~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 185 SVDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp ESTTC---CEEEECCSEEEEEEEECTTCS---SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred ecccc---ccchheeeeeeeEEEecCCCC---CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 88643 466788898777666554221 003455555543 78999988532 1111 111 112
Q ss_pred CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
.-..++..++.-. ++..-+.-|.|++||+.++..+..-+ . ....|...+-+....=++.....|.|.--.+++..
T Consensus 259 DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nr--I-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 259 DFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR--I-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceeEEEecccCC-EEEEEecCceEEEEecccceeeeeec--c-cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 3455788888776 77888899999999999998654433 2 23445555555554445556688888877777653
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.36 E-value=0.011 Score=50.03 Aligned_cols=238 Identities=12% Similarity=0.026 Sum_probs=112.8
Q ss_pred CceEEEEecC----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC----C-----CcEEEee
Q psy17342 131 PYLILGGTYS----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN----D-----GRLCSWS 197 (401)
Q Consensus 131 ~~~l~~g~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i~~wd 197 (401)
..+++.|+.+ ..+.+||..+.+-......+.....| +++. .++..++.|+. + ..+.+||
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-----~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-----AGCV---VGGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-----EEEE---ETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-----eEEE---ECCEEEEECCCcCCCCCCeecceEEEEC
Confidence 3566666532 35888888765533221111111122 2222 25666666665 2 3577788
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSS 272 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 272 (401)
+.+.. -.....+.. .......+.+ ++.+++.|+.+ ..+.+||....+-..+..+......-..+.+
T Consensus 97 ~~~~~-W~~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 97 PMTNQ-WSPCAPMSV-----PRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp TTTTE-EEECCCCSS-----CCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred CCCCe-EeECCCCCc-----CccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 76421 111111111 1112222222 45677776643 3477888765432222222111111112222
Q ss_pred CccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEE
Q psy17342 273 HRAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLW 340 (401)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iw 340 (401)
. +.+++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++. +++.|+.+ ..+.+|
T Consensus 168 --~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --N------RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --T------TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEE
T ss_pred --C------CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEE
Confidence 2 5777777754 35888887654311 111111111222333 443 77777764 568999
Q ss_pred eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342 341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT 399 (401)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~ 399 (401)
|+.+.+-......+.. ......+. -++++++.|+.+ ..|.+||+.+.+...+..++
T Consensus 237 d~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 237 DVETETWTFVAPMKHR-RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp ETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred eCCCCcEEECCCCCCC-ccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 9887542211110000 11112222 267788888754 45889999988776665544
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.23 E-value=0.07 Score=44.59 Aligned_cols=243 Identities=8% Similarity=0.072 Sum_probs=138.4
Q ss_pred EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342 71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV 150 (401)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~ 150 (401)
.-.+|..+.||.-+ ..++.|+|+++...+..+.+ ...|.-=.|-.. +.|+--+ +..|+-|++..
T Consensus 72 AIMnP~~~ViALra-----------g~~LQiFnletK~klks~~~--~e~VvfWkWis~--~~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 72 AIMNPASKVIALKA-----------GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISL--NTVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEECSSSSEEEEEE-----------TTEEEEEETTTTEEEEEEEC--SSCEEEEEECSS--SEEEEEE-SSEEEEEESST
T ss_pred eeeCCCccEEEEec-----------CCeEEEechHHhhhhcceec--CCccEEEEecCC--CeEEEEc-CCcEEEEcccC
Confidence 44588876555555 78999999998766655544 467777777653 3444443 56899999976
Q ss_pred CCC-CceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-------CCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342 151 QKK-TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-------DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222 (401)
Q Consensus 151 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 222 (401)
... .........+. ...|..-.. +++.+.++..+- .|.+.+|..+. ...+. ..+|...-
T Consensus 136 ~s~P~kvFdR~~~L~--~~QIInY~~--d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~-------ieGhaa~F 202 (365)
T 2xzh_A 136 ESQPVKMFDRHSSLA--GCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQP-------IEGHAASF 202 (365)
T ss_dssp TCCCEEEEECCGGGT--TCEEEEEEE--CTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEE-------ECCSEEEE
T ss_pred CCCCceeeecchhcc--cceEEEEEE--CCCCCEEEEEeEeccCCccceeEEEEeecc--cccce-------eeeeeeee
Confidence 322 11222211221 234444444 777776665432 36788888764 11111 23344444
Q ss_pred EEEEec--cCCCCeEEEEcC---CceEEEEeCCCC-CCCc------eeeecC---CCCceeeeecCccCCCCCCCcEEEE
Q psy17342 223 LSLAFP--QNDVNNFVVGCE---DGNVYSACRHGN-KAGN------VECYEG---HEGPVVGLSSHRAQGHIDFSHLYLT 287 (401)
Q Consensus 223 ~~~~~~--~~~~~~l~~~~~---d~~i~~~~~~~~-~~~~------~~~~~~---~~~~v~~i~~~~~~~~~~~~~~l~s 287 (401)
..+.+. +.....++.+.. .+.+++.++... .... +..+.. ..+--.++..++. -..+..
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k------ygviyv 276 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HDVVFL 276 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT------TTEEEE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc------CCEEEE
Confidence 333332 011123333322 257888887432 1111 111111 1223345566655 356777
Q ss_pred EeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
-..-|.|.+||++++.++..-+-....|..-+-+..... +++....|.|.--.++....++
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~G-i~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTE-EEEEETTCEEEEEEECTTTHHH
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCc-EEEEcCCCEEEEEEECcccEeh
Confidence 778999999999999999887776777766665544333 4445578888777777655443
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.18 E-value=0.093 Score=45.17 Aligned_cols=242 Identities=10% Similarity=0.014 Sum_probs=119.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-E----ecCCCeeEEEEeCC---CCceEEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-F----FCQSPVLSCCFAKF---NPYLILGG 137 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~~~---~~~~l~~g 137 (401)
.....|+|.|+|+ |+++. .++.|++++.. ++ ..+. + ........|+++|+ +..+.++-
T Consensus 29 ~~P~~ia~~pdG~-l~V~e----------~~g~I~~~d~~-G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTE----------RPGRLVLISPS-GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp SCEEEEEEEETTE-EEEEE----------TTTEEEEECSS-CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCeEEEEcCCCe-EEEEe----------CCCEEEEEeCC-Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 4478899999996 55556 47999999743 43 1111 1 12356899999997 43444443
Q ss_pred ec---C----CeEEEEECCCCCCCce-eecc---c-cccCCCCcEEEEEEeecCCceEEEEEeCC-------------Cc
Q psy17342 138 TY---S----GQIVLWDTRVQKKTPV-HRTP---L-SVMAHTHPVFCMSVIGTQNAHNLISISND-------------GR 192 (401)
Q Consensus 138 ~~---d----g~v~iw~~~~~~~~~~-~~~~---~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~ 192 (401)
+. + +.|..|+......... .+.. + ....|. ...+.| .+++.++++.+.. |.
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~--~pDG~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRF--GPDGMLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEE--CTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEE--CCCCcEEEEECCCCCCccccCCCCCCeE
Confidence 32 3 5677777665411110 0000 0 011233 356888 8899766664432 34
Q ss_pred EEEeeccCCCCCc-c---ccccccccccCCccceEEEEeccCCCCeEEEEcCCc---eEEEEeCCCC-------------
Q psy17342 193 LCSWSLEMLSSPQ-E---TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG---NVYSACRHGN------------- 252 (401)
Q Consensus 193 i~~wd~~~~~~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~------------- 252 (401)
|.-++... ..+. . ..++. ..++ .....++|+|.++.++++-.... .|.+...-.+
T Consensus 171 I~ri~~dG-~~p~~npf~~~~i~---a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~ 245 (354)
T 3a9g_A 171 ILRVDEEG-RPPADNPFPNSPIW---SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG 245 (354)
T ss_dssp EEEECTTS-CCCTTSSSTTCCEE---EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred EEEEcCCC-CCCCCCCCCCCcEE---EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence 55444432 1000 0 00000 0011 23457888832555444432221 2333221110
Q ss_pred -CCCceeeecCCCCceeeeecCccCCCC-CCCcEEEEEeCCCeEEEEEeeCC-Cce--EEEe-ecCCceEEEEECCCCCc
Q psy17342 253 -KAGNVECYEGHEGPVVGLSSHRAQGHI-DFSHLYLTSSYDWSVKLWNIKEN-KPV--HSFN-EFRDYVMDVQWSPINPA 326 (401)
Q Consensus 253 -~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~v~~v~~~~~~~~ 326 (401)
...++..+.........+.+.....-+ ..+.++++.-..+.|...++... +.. ..+. .....+..+++.|+|.
T Consensus 246 ~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~- 324 (354)
T 3a9g_A 246 EFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG- 324 (354)
T ss_dssp TSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-
T ss_pred CCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-
Confidence 001222331112345566664211000 01567776666778888888753 322 1222 1235688999999996
Q ss_pred EEEEE
Q psy17342 327 LFATV 331 (401)
Q Consensus 327 ~l~~~ 331 (401)
++++.
T Consensus 325 lyv~~ 329 (354)
T 3a9g_A 325 ILIST 329 (354)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.16 E-value=0.097 Score=44.85 Aligned_cols=184 Identities=9% Similarity=0.090 Sum_probs=99.0
Q ss_pred cCCeEEEEECCCCCCCceeeccccccC-----CCCcEEEEEEeecCCce-EEEEE-eC--CCcEEEeeccCCCCCccccc
Q psy17342 139 YSGQIVLWDTRVQKKTPVHRTPLSVMA-----HTHPVFCMSVIGTQNAH-NLISI-SN--DGRLCSWSLEMLSSPQETRD 209 (401)
Q Consensus 139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~l~s~-~~--dg~i~~wd~~~~~~~~~~~~ 209 (401)
.+|.|.++|.++...... . +.+.+ ..-....+.+....++. +|+.+ .. +.++.+|+++..........
T Consensus 81 ~~G~I~~~d~~~~~~~~~-~--l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVS-E--LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp -CCEEEEEETTSSSCCEE-E--CEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCCCCceE-E--EEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 689999999875432211 1 11222 23466777764332342 34444 33 46788888865322111110
Q ss_pred cccccccCCccceEEEEeccCCCCeEEEEc-----------------CCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342 210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----------------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS 272 (401)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 272 (401)
-. ....-.....+.+. +++.+.++.. ..|.|+.++.. + +..+...-..-+.++|
T Consensus 158 ~~---~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---~~~~~~~l~~pNGia~ 228 (355)
T 3sre_A 158 TI---RHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---VRVVAEGFDFANGINI 228 (355)
T ss_dssp EE---CCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---CEEEEEEESSEEEEEE
T ss_pred cc---ccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e---EEEeecCCcccCcceE
Confidence 00 11123457788888 6777666543 23566666652 2 2222222344688999
Q ss_pred CccCCCCCCCcEE-EEEeCCCeEEEEEeeC-CCc--eEEEeecCCceEEEEECC-CCCcEEEEEecC-CEEEEEeC
Q psy17342 273 HRAQGHIDFSHLY-LTSSYDWSVKLWNIKE-NKP--VHSFNEFRDYVMDVQWSP-INPALFATVEVA-GRVDLWNL 342 (401)
Q Consensus 273 ~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~v~~~~-~~~~~l~~~~~d-~~i~iwd~ 342 (401)
+|+ ++.+ ++-+..+.|..|++.. ++. ...+ ...+..-.+++.+ +|. +.+++..+ +.|..|+.
T Consensus 229 spD------g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 229 SPD------GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp CTT------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCT
T ss_pred CCC------CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECC
Confidence 998 5544 4455678999999864 322 1233 2246678899999 586 55555433 23444443
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.13 E-value=0.2 Score=50.65 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=150.9
Q ss_pred CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS 174 (401)
Q Consensus 95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (401)
....|.|-|+.++..+.+.... --+.-.+|.. ++++.- ...++.|+|+++...... .....+|.-=.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks-------~~~~e~VvfWk 112 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKA-------HTMTDDVTFWK 112 (1630)
T ss_pred CCceEEEEECCCCCCccccccc----chhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcc-------cccCCCceEEE
Confidence 3458889999876554333222 2233457744 566655 368899999988765421 22234566556
Q ss_pred EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEE
Q psy17342 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSA 247 (401)
Q Consensus 175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~ 247 (401)
| -.. +.|+-.+ +..|..|++.....|...+..... + ....|..-..+ ++.++++..+ -.|.+.+|
T Consensus 113 W--is~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~-L--~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 113 W--ISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred e--cCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchh-c--ccCeeEEeeeC-CCCCeEEEEeeccCCCcccceeeee
Confidence 6 333 3333333 347999999754556555554431 1 23556666666 6666655332 35778899
Q ss_pred eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCC---CceEE------Eee---cC
Q psy17342 248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKEN---KPVHS------FNE---FR 312 (401)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~---~~~~~------~~~---~~ 312 (401)
+.... ....+.||.+....+...... ....+++.+.. .+++.|-++... .+... +-. ..
T Consensus 185 S~er~---~sQ~iegha~~F~~~~~~~~~---~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~ 258 (1630)
T 1xi4_A 185 SVDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (1630)
T ss_pred ecccc---cchhhhHhHhhhheeccCCCC---CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccccc
Confidence 87643 345667887766554443211 00344444432 368888888442 11111 111 12
Q ss_pred CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.-..++..++.-. ++...+.-|.|.+||+.++..+..-+. . ...|...+-+....-++.....|.|.--.+...
T Consensus 259 Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ri--s-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 259 DFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI--S-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred CcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccc--c-CCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 2344677777765 777788899999999999987654332 1 233433343433333444456777776666654
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.96 E-value=0.15 Score=43.79 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=124.9
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeC---C
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISN---D 190 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~---d 190 (401)
-.....|+|.|++ +++++ ..+|.|.+++. .+. ......+ ...........|++ +|+ +.+.++-+. +
T Consensus 28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~-~G~-~~~~~~~-v~~~g~~g~~gia~--~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISP-SGK-KLVASFD-VANVGEAGLLGLAL--HPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CSCEEEEEEEETT-EEEEE-ETTTEEEEECS-SCE-EEEEECC-CCCSTTCSEEEEEE--CTTTTTSCEEEEEEEEECGG
T ss_pred CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeC-CCc-eEeeccc-eeecCCCceeeEEe--CCCCCcCCEEEEEEeccCCC
Confidence 3457899999987 55554 56799999873 332 2222111 11122346788998 776 444444332 3
Q ss_pred ----CcEEEeeccCCC-CCcccccc-ccccccCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342 191 ----GRLCSWSLEMLS-SPQETRDL-QYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG 251 (401)
Q Consensus 191 ----g~i~~wd~~~~~-~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~ 251 (401)
..|..++..... .......+ ... ..........|+|. +++.++++.+. .|.|..++..+
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~-~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGI-PGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEE-ECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcC-CCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 567777765321 01000000 000 00111234578898 68876555332 25676666653
Q ss_pred CCC------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCC------------------Cc
Q psy17342 252 NKA------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKEN------------------KP 304 (401)
Q Consensus 252 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~------------------~~ 304 (401)
.-. .....-.++.. ...++|+|.. +.++++-.... .|.+. ..+ .+
T Consensus 179 ~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~-----g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p 250 (354)
T 3a9g_A 179 RPPADNPFPNSPIWSYGHRN-PQGIDWHRAS-----GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDP 250 (354)
T ss_dssp CCCTTSSSTTCCEEEECCSC-CCEEEECTTT-----CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCCCCCCCCCcEEEEccCC-cceEEEeCCC-----CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCC
Confidence 210 00111123433 3578999843 56555543222 23322 222 23
Q ss_pred eEEEeecCCceEEEEEC-------CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec-CCCCeEEEEecCCCcEEEEE
Q psy17342 305 VHSFNEFRDYVMDVQWS-------PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE-GAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 305 ~~~~~~~~~~v~~v~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~ 376 (401)
+..+.........++|. .+|. ++++.-..+.|...++.............. ....+..+++.|||.++++.
T Consensus 251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 251 VIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp SEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 33331113457788884 4564 677666677888888875322211111122 23568999999999766665
Q ss_pred e
Q psy17342 377 D 377 (401)
Q Consensus 377 ~ 377 (401)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.96 E-value=0.16 Score=43.76 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=125.1
Q ss_pred CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeC-----
Q psy17342 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISN----- 189 (401)
Q Consensus 119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~----- 189 (401)
.....|+|.|++..++++ ...|.|++++............+............+++ +|+ +...++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCCCC
Confidence 457899999988325544 56899999985432111111111001122345688998 775 444444322
Q ss_pred --CCcEEEeeccCCCCC-cccccc-ccccc-cCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342 190 --DGRLCSWSLEMLSSP-QETRDL-QYNNK-QTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG 251 (401)
Q Consensus 190 --dg~i~~wd~~~~~~~-~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~ 251 (401)
...|..+++...... .....+ ..... .........|+|. +++.++++.+. .|.|.-++..+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 234666665431110 000000 00000 0111224578999 68765555433 24677777654
Q ss_pred CCC----------Cceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCC-----------------
Q psy17342 252 NKA----------GNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKEN----------------- 302 (401)
Q Consensus 252 ~~~----------~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~----------------- 302 (401)
... .....+ .++. ....++|.|.. +.++++-.. ++.=.|.-+..+
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~-----g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~ 247 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWS-----NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF 247 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTT-----TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred CCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCC-----CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence 310 001111 2343 35688999842 555554332 111122211111
Q ss_pred --------------CceEEEeecCCceEEEEECC-------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342 303 --------------KPVHSFNEFRDYVMDVQWSP-------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL 361 (401)
Q Consensus 303 --------------~~~~~~~~~~~~v~~v~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 361 (401)
.++..+.. ......++|.. ++. ++++.-..+.|...++..++..............+
T Consensus 248 ~~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 248 KIPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp CCTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred ccCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 12223332 23567788864 354 67766677888888887543221111111223468
Q ss_pred EEEEecCCCcEEEEEe-cCCcEEEEEe
Q psy17342 362 SRVTWTPNGTQLCVGD-EKGAITMFDV 387 (401)
Q Consensus 362 ~~~~~s~~g~~l~~~~-~dg~v~iw~~ 387 (401)
..+++.|||.++++.. .+| +||.+
T Consensus 326 ~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred eEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 8999999998665433 344 45554
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.87 E-value=0.11 Score=43.88 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=99.1
Q ss_pred cEEEEEeCcCCCCCceEEEecC-CCeeEEEEeCCCCceEEEEec----C-------CeEEEEECCCCCCCceeecccccc
Q psy17342 97 GVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFNPYLILGGTY----S-------GQIVLWDTRVQKKTPVHRTPLSVM 164 (401)
Q Consensus 97 ~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~----d-------g~v~iw~~~~~~~~~~~~~~~~~~ 164 (401)
..+.+||..+++-.. .....+ .......... +..+++.|+. + ..+.+||..+.+-......+....
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 678899998755322 111111 1122222233 3366666663 1 126778887654322111111011
Q ss_pred CCCCcEEEEEEeecCCceEEEEEeCC--------CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE
Q psy17342 165 AHTHPVFCMSVIGTQNAHNLISISND--------GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236 (401)
Q Consensus 165 ~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 236 (401)
.| +++. -++..++.|+.+ ..+.+||..+.. -.....++. .......+. .++.+++
T Consensus 91 ~~-----~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~-----~r~~~~~~~---~~~~iyv 153 (315)
T 4asc_A 91 LF-----GLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPY-----VVYGHTVLS---HMDLVYV 153 (315)
T ss_dssp SC-----EEEE---ETTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSS-----CCBSCEEEE---ETTEEEE
T ss_pred ce-----eEEE---ECCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCC-----cccceeEEE---ECCEEEE
Confidence 11 2222 256666666632 347788876421 111111111 111222222 2456777
Q ss_pred EEcC-C-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCce
Q psy17342 237 VGCE-D-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPV 305 (401)
Q Consensus 237 ~~~~-d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~ 305 (401)
.|+. + ..+.+||....+-..+..+.........+.+ . +.+++.|+.++ .+.+||+.+.+-.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D------GRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C------CEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 7765 2 3578888775432222222111111112222 2 57788887654 4778887664321
Q ss_pred EE--EeecCCceEEEEECCCCCcEEEEEecCC--------------EEEEEeCCCCC
Q psy17342 306 HS--FNEFRDYVMDVQWSPINPALFATVEVAG--------------RVDLWNLNLDT 346 (401)
Q Consensus 306 ~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~ 346 (401)
.. +.........+.+ ++. +++.|+.++ .+.+||+.+.+
T Consensus 226 ~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 226 PFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 11 1111111222222 343 677776542 46778887653
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.84 E-value=0.045 Score=45.84 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=78.6
Q ss_pred CCCeEEEEcCC-----ceEEEEeCCCCC---CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEE
Q psy17342 231 DVNNFVVGCED-----GNVYSACRHGNK---AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLW 297 (401)
Q Consensus 231 ~~~~l~~~~~d-----~~i~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iw 297 (401)
++.+++.|+.+ ..+.+||....+ -..+..+.........+.+ + +.+++.|+.+ ..+.+|
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~------~~lyv~GG~~~~~~~~~~~~~ 133 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--G------DMIYVSGGFDGSRRHTSMERY 133 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--T------TEEEEECCBCSSCBCCEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--C------CEEEEEcccCCCcccceEEEE
Confidence 46677777754 358888887654 2222222211111112222 2 5677777654 357888
Q ss_pred EeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCC-CCeEEEEecCC
Q psy17342 298 NIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGA-PALSRVTWTPN 369 (401)
Q Consensus 298 d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~~ 369 (401)
|..+.+-.. .+......-..+.+ ++. +++.|+.+ ..+.+||+.+.+-..... .... .....+. .+
T Consensus 134 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~--~~ 206 (301)
T 2vpj_A 134 DPNIDQWSMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATKRSGAGVAL--LN 206 (301)
T ss_dssp ETTTTEEEEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEE--ET
T ss_pred cCCCCeEEECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCcccccceEEE--EC
Confidence 876653221 11111111122222 454 77777654 468889987654221110 1111 1112222 26
Q ss_pred CcEEEEEecC-----CcEEEEEeccCccceeeee
Q psy17342 370 GTQLCVGDEK-----GAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 370 g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~ 398 (401)
+++++.|+.+ ..+.+||+.+.+...+..+
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 7777888764 4689999998866655443
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.82 E-value=0.075 Score=44.86 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=73.8
Q ss_pred CCCeEEEEcCC--------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-C-----CeEEE
Q psy17342 231 DVNNFVVGCED--------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-D-----WSVKL 296 (401)
Q Consensus 231 ~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d-----~~i~i 296 (401)
++.+++.|+.+ ..+.+||....+-..+..+.........+.+ . +.+++.|+. + ..+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~ 169 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M------DLVYVIGGKGSDRKCLNKMCV 169 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEECCBCTTSCBCCCEEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C------CEEEEEeCCCCCCcccceEEE
Confidence 45666777632 3478888865432222222111111111221 2 567777775 2 36888
Q ss_pred EEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCCCCcceEEeecC-CCCeEEEEecC
Q psy17342 297 WNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDTEVPATSAIVEG-APALSRVTWTP 368 (401)
Q Consensus 297 wd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~ 368 (401)
||..+.+- +..+......-..+.+ ++. +++.|+.++ .+.+||+.+.+-..... ... ......+. -
T Consensus 170 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~ 242 (315)
T 4asc_A 170 YDPKKFEWKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEA--FPQERSSLSLVS--L 242 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEE--E
T ss_pred EeCCCCeEEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCCeEEECCC--CCCcccceeEEE--E
Confidence 88866431 1111111111122222 443 777777654 58889987753221110 111 11112222 2
Q ss_pred CCcEEEEEecCC--------------cEEEEEeccCcccee
Q psy17342 369 NGTQLCVGDEKG--------------AITMFDVGEVGIACL 395 (401)
Q Consensus 369 ~g~~l~~~~~dg--------------~v~iw~~~~~~~~~l 395 (401)
++++++.|+.++ .|.+||+.+.+.+.+
T Consensus 243 ~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 677777777642 478899888765544
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.65 E-value=0.074 Score=44.54 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=98.9
Q ss_pred cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----CeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342 97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF 171 (401)
Q Consensus 97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (401)
..+.+||..+.+-...-.......-.+++.. +..+++.|+.+ ..+.+||..+.+-......+ .......
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~ 103 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----DRRSTLG 103 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----ccccceE
Confidence 4578888875432111001111111122222 33677777654 35888888776533222111 1111112
Q ss_pred EEEEeecCCceEEEEEeCCC-----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----
Q psy17342 172 CMSVIGTQNAHNLISISNDG-----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----- 241 (401)
Q Consensus 172 ~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 241 (401)
.+.+ ++..++.|+.++ .+.+||+.+.. -.....+. ........+.+ ++.+++.|+.+
T Consensus 104 ~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p-----~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 104 AAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMN-----TRRSSVGVGVV---GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp EEEE----TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCS-----SCCBSCEEEEE---TTEEEEECCEETTTTE
T ss_pred EEEE----CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCC-----CcccCceEEEE---CCEEEEEeCCCCCCCc
Confidence 2222 566777776553 36677765411 11111111 11111222222 45666666542
Q ss_pred --ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceE--EEeecC
Q psy17342 242 --GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVH--SFNEFR 312 (401)
Q Consensus 242 --~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~--~~~~~~ 312 (401)
..+.+||.....-..+..+.........+.+ + +.+++.|+.+ ..+.+||+.+.+-.. .+....
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N------NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T------TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--C------CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 3478888865432222222211111112222 2 5777777764 368888887643211 111111
Q ss_pred CceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCC
Q psy17342 313 DYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDT 346 (401)
Q Consensus 313 ~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 346 (401)
.....+.+ ++. +++.|+.++ .+.+||+.+.+
T Consensus 243 ~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 243 RNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence 11112222 443 777777553 47888887653
No 325
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.61 E-value=0.048 Score=47.03 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=26.1
Q ss_pred eEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCC------EEEEEeCCCCCCCcc
Q psy17342 293 SVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAG------RVDLWNLNLDTEVPA 350 (401)
Q Consensus 293 ~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~ 350 (401)
.+.+||+.+.+- +..+......-.++. .+++ +++.|+.++ .+.++++++++....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 577888876532 222222111122222 3454 777777542 466668887665443
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.60 E-value=0.32 Score=42.47 Aligned_cols=244 Identities=8% Similarity=0.073 Sum_probs=140.8
Q ss_pred EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342 70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR 149 (401)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~ 149 (401)
+.-.+|..+.+|.=+ ..++.|+|+++...+..+.+ ...|.-=.|-.+ +.|+--+ +..|+-|++.
T Consensus 70 sAIMnP~~~iiALra-----------g~~lQiFnle~K~klks~~~--~e~VvfWkWis~--~~l~lVT-~taVyHWsi~ 133 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-----------GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISL--NTVALVT-DNAVYHWSME 133 (494)
T ss_dssp EEEECSSSSCEEEEE-----------TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEET--TEEEEEC-SSEEEEEESS
T ss_pred eeeeCCCCcEEEEec-----------CCeEEEEchHHhhhhcceec--CCCceEEEecCC--CeEEEEc-CCeeEEeccc
Confidence 345678876666555 78999999997766655544 456766677653 3454443 5789999997
Q ss_pred CCCC-CceeeccccccCCCCcEEEEEEeecCCceEEEEEe-------CCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342 150 VQKK-TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA 221 (401)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (401)
.... .........+. ...|..-.. +++.++++..+ -.|.+.+|..+. ...+. ..+|...
T Consensus 134 ~~s~P~kvFdR~~~L~--~~QIInY~~--d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~-------ieGhaa~ 200 (494)
T 1bpo_A 134 GESQPVKMFDRHSSLA--GCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQP-------IEGHAAS 200 (494)
T ss_dssp SSCCCEEEEECCGGGT--TCEEEEEEE--CTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEE-------ECCSEEE
T ss_pred CCCCchhheecchhcc--cceEEEEEE--CCCCCeEEEEeecccCCcccceEEEeeccc--cccch-------heeeeee
Confidence 6321 11222111221 234444444 77877766443 246788898864 12221 2335444
Q ss_pred eEEEEec--cCCCCeEEEEcC---CceEEEEeCCCC-CCCc------eeeec---CCCCceeeeecCccCCCCCCCcEEE
Q psy17342 222 VLSLAFP--QNDVNNFVVGCE---DGNVYSACRHGN-KAGN------VECYE---GHEGPVVGLSSHRAQGHIDFSHLYL 286 (401)
Q Consensus 222 v~~~~~~--~~~~~~l~~~~~---d~~i~~~~~~~~-~~~~------~~~~~---~~~~~v~~i~~~~~~~~~~~~~~l~ 286 (401)
...+... +.....++.+.. .+.+++.++... .... +..+. ...+--.++..++. -..+.
T Consensus 201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k------ygviy 274 (494)
T 1bpo_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HDVVF 274 (494)
T ss_dssp EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT------TTEEE
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc------CCEEE
Confidence 4444333 011123333333 367888887533 1111 01111 11223345666666 35677
Q ss_pred EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
.-..-|.|.+||+.++.++..-+-....|..-+-+..... +++....|.|.--.++....++
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHHH
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccccchh
Confidence 7778999999999999999887776777766666555443 4455578888777776655443
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.57 E-value=0.14 Score=45.70 Aligned_cols=108 Identities=8% Similarity=0.158 Sum_probs=59.6
Q ss_pred ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------CCCceeeeecCccCCCCCCCcEEEEEeC----
Q psy17342 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------HEGPVVGLSSHRAQGHIDFSHLYLTSSY---- 290 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~~~~~~l~s~~~---- 290 (401)
....|+|. ++++++++-...+.|++++........+..+.. .......|+++|+-.. + +.++++-+.
T Consensus 28 ~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~-~-g~lYv~~s~~~~~ 104 (454)
T 1cru_A 28 KPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN-N-PYIYISGTFKNPK 104 (454)
T ss_dssp SEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT-S-CEEEEEEEEECTT
T ss_pred CceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc-C-CEEEEEEeccccC
Confidence 56789999 788766665544578888754322222222221 2455679999995100 0 455555542
Q ss_pred --------CCeEEEEEeeCC-------CceEE-Eee-cCCceEEEEECCCCCcEEEEEe
Q psy17342 291 --------DWSVKLWNIKEN-------KPVHS-FNE-FRDYVMDVQWSPINPALFATVE 332 (401)
Q Consensus 291 --------d~~i~iwd~~~~-------~~~~~-~~~-~~~~v~~v~~~~~~~~~l~~~~ 332 (401)
...|.-+++... +.+.. +.. .......++|.|+|. ++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 235555665432 11111 221 123468999999997 555544
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.55 E-value=0.064 Score=45.03 Aligned_cols=153 Identities=7% Similarity=0.032 Sum_probs=77.2
Q ss_pred CCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEee
Q psy17342 231 DVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNIK 300 (401)
Q Consensus 231 ~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~ 300 (401)
++.+++.|+.+ ..+.+||....+-..+..+.........+.+ . +.+++.|+.+ ..+.+||..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--E------GKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--T------TEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--C------CEEEEECCCCCCCcEeeeEEEEeCC
Confidence 45677777754 5678888875432222222211111112222 2 5777777765 458888887
Q ss_pred CCCceEE--EeecCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcceEEeecCC-CCeEEEEecC
Q psy17342 301 ENKPVHS--FNEFRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPATSAIVEGA-PALSRVTWTP 368 (401)
Q Consensus 301 ~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~ 368 (401)
+.+-... +......-..+.+ ++. +++.|+. -..+.+||+.+.+-..... .... ..-..+.+
T Consensus 127 ~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~-- 199 (306)
T 3ii7_A 127 TESWHTKPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEARKNHGLVFV-- 199 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSCCBSCEEEEE--
T ss_pred CCceEeCCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccchhhcceEEEE--
Confidence 6532111 1111111122222 443 6666664 3458889988754211110 1111 11112222
Q ss_pred CCcEEEEEecC-----CcEEEEEeccCccceeeee
Q psy17342 369 NGTQLCVGDEK-----GAITMFDVGEVGIACLKFI 398 (401)
Q Consensus 369 ~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~ 398 (401)
++++++.|+.+ ..+.+||+.+.+...+..+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 67777777654 3689999988766655443
No 329
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.48 E-value=0.66 Score=44.57 Aligned_cols=272 Identities=11% Similarity=0.056 Sum_probs=141.4
Q ss_pred ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144 (401)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~ 144 (401)
...|.+|.-..+| +|..|+ .+| +..||-..-+............|.++.-..++ .|..|+.+| +.
T Consensus 21 ~n~V~~I~qD~~G-~lWigT----------~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g--~lWigT~~G-l~ 85 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGS----------NKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT--YLYMGTDNG-IL 85 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEE----------SSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT--EEEEEETTE-EE
T ss_pred cceEEEEEECCCC-CEEEEE----------CCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC--cEEEEeCCC-eE
Confidence 3669999988888 677777 455 56676421110000000113468888766644 566666555 78
Q ss_pred EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224 (401)
Q Consensus 145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (401)
.||..+..... +. ......|.++.. .++. |..++.+ .+..++.... ......... .......|.+
T Consensus 86 ~yd~~~~~f~~----~~--~~~~~~i~~i~~---~~g~-lWigt~~-Gl~~~~~~~~--~~~~~~~~~--~~l~~~~i~~ 150 (758)
T 3ott_A 86 VYNYRADRYEQ----PE--TDFPTDVRTMAL---QGDT-LWLGALN-GLYTYQLQSR--KLTSFDTRR--NGLPNNTIYS 150 (758)
T ss_dssp EEETTTTEECC----CS--CCCCSCEEEEEE---ETTE-EEEEETT-EEEEEETTTC--CEEEECHHH--HCCSCSCEEE
T ss_pred EEeCCCCEEEC----cc--cCCCceEEEEEe---cCCc-EEEEcCC-cceeEeCCCC--eEEEeccCC--CCcCCCeEEE
Confidence 99987654321 01 112335776653 3454 5555555 5777876531 111110000 0112345788
Q ss_pred EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--C----CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--G----HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~----~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
+... .++. +.+|+.+| +..++..... ...+. . ....|.++...+. +..|..|.. +-+..+|
T Consensus 151 i~~d-~~g~-lWigt~~G-l~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~------~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 151 IIRT-KDNQ-IYVGTYNG-LCRYIPSNGK---FEGIPLPVHSSQSNLFVNSLLEDTT------RQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp EEEC-TTCC-EEEEETTE-EEEEETTTTE---EEEECCCCCTTCSSCCEEEEEEETT------TTEEEEEEE-EEEEEEE
T ss_pred EEEc-CCCC-EEEEeCCC-HhhCccCCCc---eEEecCCCccccccceeEEEEEECC------CCEEEEEEC-CCCeEEc
Confidence 8766 4444 45566554 6667765332 11111 1 1223677766654 344444443 4577888
Q ss_pred eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-----cCCCCeEEEEecCCCcEE
Q psy17342 299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-----EGAPALSRVTWTPNGTQL 373 (401)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~~l 373 (401)
..+++...........|.++...++|. + ..|+. +-+.+++..+.... .+.... -....|.++....+|.+.
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-l-WigT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lW 293 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALDGNGD-L-LAGTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIW 293 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEECTTCC-E-EEEET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEE
T ss_pred CCCCeEEeccCCCCCeEEEEEEcCCCC-E-EEEeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEE
Confidence 765543221111234688888888886 3 34444 45788887654321 111000 013458888888777644
Q ss_pred EEEecCCcEEEE
Q psy17342 374 CVGDEKGAITMF 385 (401)
Q Consensus 374 ~~~~~dg~v~iw 385 (401)
.|+..| +.++
T Consensus 294 -iGT~~G-l~~~ 303 (758)
T 3ott_A 294 -LGTDYG-ISLS 303 (758)
T ss_dssp -EEESSS-EEEE
T ss_pred -EEeCCc-cccc
Confidence 455556 5443
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.45 E-value=0.21 Score=42.13 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=72.9
Q ss_pred CCCeEEEEcCC-------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC------CCeEEEE
Q psy17342 231 DVNNFVVGCED-------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY------DWSVKLW 297 (401)
Q Consensus 231 ~~~~l~~~~~d-------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~------d~~i~iw 297 (401)
++.+++.|+.+ ..+.+||....+-..+..+......- ++.. .. +.+++.|+. -..+.+|
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~------~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HN------GMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ET------TEEEEECCEESSSCBCCCEEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-EC------CEEEEEcCCCCCCCccceEEEE
Confidence 45677777653 34777887654322221111111111 1111 12 567777764 2358888
Q ss_pred EeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342 298 NIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG 370 (401)
Q Consensus 298 d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 370 (401)
|+.+.+-... +.........+.+ ++. +++.|+.+ ..+.+||+.+.+-......+. .......+ ..++
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~ 254 (318)
T 2woz_A 181 NPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV--SLAG 254 (318)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE--EETT
T ss_pred cCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE--EECC
Confidence 8876532111 1111111122222 343 67777643 357789988754322111100 01111222 2367
Q ss_pred cEEEEEecC--------------CcEEEEEeccCcccee
Q psy17342 371 TQLCVGDEK--------------GAITMFDVGEVGIACL 395 (401)
Q Consensus 371 ~~l~~~~~d--------------g~v~iw~~~~~~~~~l 395 (401)
++++.|+.+ ..+.+||+.+.+...+
T Consensus 255 ~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 255 SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 777777754 3588999988765544
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.44 E-value=0.4 Score=48.59 Aligned_cols=220 Identities=12% Similarity=0.185 Sum_probs=125.6
Q ss_pred CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342 140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN 219 (401)
Q Consensus 140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 219 (401)
..+|.|.|+..+... .+.++ .-.+.| . +|..+.++.-. ..++.++++++.. ......+ .
T Consensus 47 ~~~vvIidl~~~~~~--~rrpi---~AdsAI----M--nP~~~iiALra-g~~lQiFnl~~k~-klks~~~--------~ 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP--IRRPI---SADSAI----M--NPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM--------T 105 (1630)
T ss_pred CceEEEEECCCCCCc--ccccc---cchhhc----c--CCCcceEEEec-CCeEEEeehHHhh-hhccccc--------C
Confidence 347889998876532 11111 111111 1 56666555543 6789999998622 2222222 2
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCceeeeecCccCCCCCCCcEEEEEe------
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVVGLSSHRAQGHIDFSHLYLTSS------ 289 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~l~s~~------ 289 (401)
..|.-=.|- +.+.|+..+ +..|+-|++.+ ...+.+.|..| ...|..-..+++ .++++..|
T Consensus 106 e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~------~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK------QKWLLLTGISAQQN 175 (1630)
T ss_pred CCceEEEec--CCCeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCC------CCeEEEEeeccCCC
Confidence 245555665 344554444 35899999975 33455566555 344555566666 56666443
Q ss_pred -CCCeEEEEEeeCCCceEEEeecCCceEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCC-CCCcceE-----EeecC
Q psy17342 290 -YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS--PINPALFATVEV---AGRVDLWNLNLD-TEVPATS-----AIVEG 357 (401)
Q Consensus 290 -~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~-----~~~~~ 357 (401)
-.|.+.+|+.+.+ ..+.+.+|......+... +....+++-+.. .+.++|-++... ...+.+. ...+.
T Consensus 176 ~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred cccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 2578899988643 345566665544433332 222224443332 268999998553 1111111 11111
Q ss_pred ---CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 358 ---APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 358 ---~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
..-..++..|+....+..-+.-|.|++||+.++.
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred ccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence 2334578888888888899999999999999984
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.43 E-value=0.71 Score=44.35 Aligned_cols=290 Identities=8% Similarity=0.052 Sum_probs=148.6
Q ss_pred ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW 146 (401)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw 146 (401)
.|.++...+++..|..++ ++-+..++..+++....... ....|.++...+++ .|..|+.+ -+.++
T Consensus 192 ~i~~i~~d~~~~~lWigt-----------~~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g--~lWigT~~-Gl~~~ 256 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGT-----------EGYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNG--DLLAGTDN-GLYVY 256 (758)
T ss_dssp CEEEEEEETTTTEEEEEE-----------EEEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTC--CEEEEETT-EEEEE
T ss_pred eeEEEEEECCCCEEEEEE-----------CCCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCC--CEEEEeCC-ceeEE
Confidence 478887777776666666 35678888775432221111 23457777776655 34445544 57888
Q ss_pred ECCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342 147 DTRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225 (401)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 225 (401)
+..+........... ...-....|.++.. ..++. |-.|+..| +.++.... ..................|.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--D~~g~-lWiGT~~G-l~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i 329 (758)
T 3ott_A 257 HNDTTPLQHIIHDSRNIQSLTNNIIWNIFA--DQEHN-IWLGTDYG-ISLSRYNS---ALQFIPISQITGTGDGNQFYSL 329 (758)
T ss_dssp CCTTSCCEEECCCTTCTTSCSCSCEEEEEE--CTTCC-EEEEESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEE
T ss_pred ecCCCcEEEEEcCCCCcCcCCcCeEEEEEE--cCCCC-EEEEeCCc-ccccccCC---ceeEEecccCCCCCCCceEEEE
Confidence 876654321111000 00123346888876 66665 44455556 54443221 1111111000001123457888
Q ss_pred EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN 298 (401)
Q Consensus 226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd 298 (401)
.-. .++ .|.+|+.+| +..++...........+.. ....|.++.-.+. +.+ ..|. ++-+..||
T Consensus 330 ~~D-~~g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~------g~l-Wigt-~~GL~~~~ 398 (758)
T 3ott_A 330 FRD-SKG-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE------QQL-WIAT-DGSINRYD 398 (758)
T ss_dssp EEC-TTC-CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT------SCE-EEEE-TTEEEEEE
T ss_pred EEc-CCC-CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC------CCE-EEEe-CCcHhhcC
Confidence 766 444 455566665 5555544211111112210 1234777776654 444 3455 45688898
Q ss_pred eeCCCceEEEe--e-----cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC--CCcceE---E-e--ec-CCCCeE
Q psy17342 299 IKENKPVHSFN--E-----FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT--EVPATS---A-I--VE-GAPALS 362 (401)
Q Consensus 299 ~~~~~~~~~~~--~-----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~---~-~--~~-~~~~v~ 362 (401)
..+++... +. . ....|.++.-.+++. |..|+..+-|.++|..+.. ....+. . . .+ ....|.
T Consensus 399 ~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 475 (758)
T 3ott_A 399 YATRQFIH-YNIVDNTGTYNTNWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN 475 (758)
T ss_dssp TTTTEEEE-EEEECCC--CBSSSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred cCCCcEEE-eecCCCcCCCCCceEEEEEEcCCCC--EEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence 87654322 22 1 124588888888775 4456655568888854210 000110 0 0 00 123588
Q ss_pred EEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 363 RVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 363 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
++...++|.+.+.++..+-|..+|..+++.
T Consensus 476 ~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 476 QIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp EEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred eEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 899988898776333344488888876643
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.29 E-value=0.17 Score=43.43 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC------cEEEEEeccCccceeeee
Q psy17342 336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG------AITMFDVGEVGIACLKFI 398 (401)
Q Consensus 336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------~v~iw~~~~~~~~~l~~~ 398 (401)
.+.+||+.+.+-...-..+. ....- .+...++++++.|+.++ .|.+++++++++..+..+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~-~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ-GRAYG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCEEEECC---CEEEEECSS-CCBSS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eEEEEecCCCceeeCCCCCC-Ccccc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 57789988765332211111 11111 22334788888888653 466678888865544433
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.28 E-value=0.31 Score=41.04 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred CCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEe
Q psy17342 231 DVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNI 299 (401)
Q Consensus 231 ~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~ 299 (401)
++.+++.|+. -..+.+||....+-..+..+.........+.+ . +.+++.|+.+ ..+.+||+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--K------GKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T------TEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--C------CEEEEEcCcCCCCccceEEEEEC
Confidence 4566677754 23488888875432222222111111112222 2 5777777653 35677887
Q ss_pred eCCC
Q psy17342 300 KENK 303 (401)
Q Consensus 300 ~~~~ 303 (401)
.+.+
T Consensus 230 ~~~~ 233 (318)
T 2woz_A 230 KTNK 233 (318)
T ss_dssp TTCC
T ss_pred CCCe
Confidence 6643
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.26 E-value=0.1 Score=43.82 Aligned_cols=236 Identities=10% Similarity=0.050 Sum_probs=106.6
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec----C-----CeEEE
Q psy17342 75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY----S-----GQIVL 145 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----d-----g~v~i 145 (401)
-++..++.|++. ...-..+.+||..+.+-...-.......-.+++.. +..+++.|+. + ..+.+
T Consensus 23 ~~~~i~v~GG~~------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 23 VGRLIYTAGGYF------RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp CCCCEEEECCBS------SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred CCCEEEEEeCcC------CCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEE
Confidence 345566666631 11235688999876432211011111111122222 3366666665 2 35888
Q ss_pred EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220 (401)
Q Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 220 (401)
||..+.+-......+ ........+.+ ++..++.|+.+ ..+.+||+.+.. -.....++. ...
T Consensus 95 ~d~~~~~W~~~~~~p----~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~-----~r~ 160 (308)
T 1zgk_A 95 YNPMTNQWSPCAPMS----VPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLT-----RRI 160 (308)
T ss_dssp EETTTTEEEECCCCS----SCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSS-----CCB
T ss_pred ECCCCCeEeECCCCC----cCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCc-----ccc
Confidence 888776532221111 11111122222 56667766643 357778876421 111111111 111
Q ss_pred ceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----
Q psy17342 221 AVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---- 291 (401)
Q Consensus 221 ~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---- 291 (401)
....+.+ ++.+++.|+.+ ..+.+||....+-..+..+.........+.+ . +.+++.|+.+
T Consensus 161 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~ 229 (308)
T 1zgk_A 161 GVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H------NCIYAAGGYDGQDQ 229 (308)
T ss_dssp SCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEECCBCSSSB
T ss_pred ceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C------CEEEEEeCCCCCCc
Confidence 1222222 45677777654 3578888765432222222111111112222 2 5777777764
Q ss_pred -CeEEEEEeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCC
Q psy17342 292 -WSVKLWNIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDT 346 (401)
Q Consensus 292 -~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 346 (401)
..+.+||+.+.+-.. .+.........+.+ ++. +++.|+.+ ..+.+||+.+.+
T Consensus 230 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 230 LNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence 468888887643211 11111111122222 343 67777643 457778877643
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.02 E-value=0.4 Score=37.62 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=83.3
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCc--------eeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP--------VVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
..+..++|+ |++.+.++ .+|.++-.+....... .+.+-... ..++.|.|+ +.+.++ .|
T Consensus 41 ~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~------G~LYav--~d 106 (236)
T 1tl2_A 41 SNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPN------GYLYAV--SK 106 (236)
T ss_dssp TTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTT------SCEEEE--ET
T ss_pred ccceeEEEC-CCccEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCC------CCEEEe--CC
Confidence 367799999 58886666 7788877775432211 11111122 367888888 677776 47
Q ss_pred CeEEEEEeeCCCce------EEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc---ceEEee-cCCCC
Q psy17342 292 WSVKLWNIKENKPV------HSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP---ATSAIV-EGAPA 360 (401)
Q Consensus 292 ~~i~iwd~~~~~~~------~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~-~~~~~ 360 (401)
|.|.-++-.+...- ..+ ..--..+..|.+.|+|. +.+ .. |+.++-....+..... .....- .+-..
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lya-v~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYA-VH-GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEE-EE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEE-Ee-CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 98887775332111 111 11124679999999995 444 44 8886443332221110 111101 12233
Q ss_pred eEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 361 LSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
...+.|.++|.+.++. +| ++|....
T Consensus 184 yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 184 FKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 4557799999877766 66 5555543
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.02 E-value=0.62 Score=39.73 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=116.1
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-----EecCCCeeEEEEeCC---CCceEEE-
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-----FFCQSPVLSCCFAKF---NPYLILG- 136 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~---~~~~l~~- 136 (401)
.....|+|.|+|. |+++.. ..|.|++++..+++...... .........|+++|+ +..+.++
T Consensus 32 ~~P~~ia~~pdG~-llVter---------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 32 NSPWGLAPLPGGD-LLVSSR---------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp SSEEEEEECTTSC-EEEEET---------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEEcCCCc-EEEEEe---------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 4578999999996 555551 37999999876444321111 122457899999995 3233332
Q ss_pred -EecCCeEEEEECCCCC-----C---CceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-------------CCcEE
Q psy17342 137 -GTYSGQIVLWDTRVQK-----K---TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-------------DGRLC 194 (401)
Q Consensus 137 -g~~dg~v~iw~~~~~~-----~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~ 194 (401)
...++.|.-|.+.... . ..+....-.-..| ....|.| .+++.+.++.+. .|.|.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~f--gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAF--GPDKMLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEE--CTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccC--CCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence 1234556666665421 1 0111100001233 3456888 889987777543 24444
Q ss_pred EeeccCCC---CCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCc--eEEEEeCCCC--------------CC
Q psy17342 195 SWSLEMLS---SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDG--NVYSACRHGN--------------KA 254 (401)
Q Consensus 195 ~wd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~~~~~~~~--------------~~ 254 (401)
-.+....- .+....++. ..++ .....++|+ +++.++++-. .++ .|.....-.+ ..
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~---a~G~-RNp~Gla~d-p~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVY---SYGH-RNVQGLAWD-DKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEE---EBCC-SBCCEEEEC-TTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEeCCCCccCCCCCCCCeEE---eeCC-CCcceEEEC-CCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 44443210 000000000 1122 235578888 4665544432 222 2322211000 00
Q ss_pred CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEE
Q psy17342 255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFAT 330 (401)
Q Consensus 255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~ 330 (401)
.++..+..+......++|.. +.+++..-..+.|....+..... ...+.+....+..|+..|+|. ++++
T Consensus 253 ~P~~~~~~~~~ap~G~~~~~-------g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~ 324 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYAE-------GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV 324 (347)
T ss_dssp CCSEEECTTTCCEEEEEEET-------TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred CCcEecCCCCCCCcceEEEc-------CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence 11222222222344556553 46666666566776667765432 222333345788899999886 4443
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.88 E-value=0.71 Score=39.34 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=124.8
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEe--CCC
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISIS--NDG 191 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~--~dg 191 (401)
-.....|+|.|++ .++++--..|.|++++...+........+............|++ +|+ +...++-+ .++
T Consensus 31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL--SPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSSE
T ss_pred CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe--ccccccCCEEEEEEecCCCC
Confidence 4567899999987 56666533899999886554432221111111233456789999 774 43334322 345
Q ss_pred cEEEeeccCCC----C---CccccccccccccCCccceEEEEeccCCCCeEEEEc-------------CCceEEEEeCCC
Q psy17342 192 RLCSWSLEMLS----S---PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------------EDGNVYSACRHG 251 (401)
Q Consensus 192 ~i~~wd~~~~~----~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------~d~~i~~~~~~~ 251 (401)
.|.-|.+.... . ....+.-.. .........|.|. +++.++++.+ ..|.|.-++..+
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p---~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIP---KGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEEC---CCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCC---CCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 56666554311 1 111111000 1122234578898 7877666543 235666666553
Q ss_pred CCC------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCC------------------CceE
Q psy17342 252 NKA------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKEN------------------KPVH 306 (401)
Q Consensus 252 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~------------------~~~~ 306 (401)
... ....--.+|.. ...++|+|. +.++++-. .|+.=.|--+..+ .++.
T Consensus 184 ~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~------G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRN-VQGLAWDDK------QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSB-CCEEEECTT------CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred CccCCCCCCCCeEEeeCCCC-cceEEECCC------CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 210 00111124544 357889886 56555432 2332233223222 1233
Q ss_pred EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-cCCCCeEEEEecCCCcEEEEEe
Q psy17342 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-EGAPALSRVTWTPNGTQLCVGD 377 (401)
Q Consensus 307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~ 377 (401)
.+..+......++|.. +. ++...-..+.|....+............. .....+..++..|||.++++-+
T Consensus 257 ~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 257 QWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 3333223566777774 43 56655555666666665443221112112 2235789999999998766543
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.77 E-value=0.29 Score=38.37 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCceEEEEeCCCCCCCce---eeecCC--CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-
Q psy17342 231 DVNNFVVGCEDGNVYSACRHGNKAGNV---ECYEGH--EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP- 304 (401)
Q Consensus 231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~---~~~~~~--~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 304 (401)
.+.+|++..+| .++.=.......... .+..+. =..+..++|+|+ +.+.+. .+|.+.-.+..+...
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~------G~LYaV--~~G~Ly~~~~~t~~~~ 73 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG------GELYGV--LNDKIYKGTPPTHDND 73 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT------SCEEEE--ETTEEEEESCCCSTTC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC------ccEEEE--eCCeEEEECCCCCCcc
Confidence 34556666666 666544332221100 011122 246789999996 677776 577766666544221
Q ss_pred -----eEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----EEeecCCCCeEEEEecCCCcEEE
Q psy17342 305 -----VHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT----SAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 305 -----~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
-..+-. --..-.++.|.|+|. +.++ .||.|+-++-.+......+ ..-...=..+..+.|.|+|.+.+
T Consensus 74 ~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lya 150 (236)
T 1tl2_A 74 NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYA 150 (236)
T ss_dssp CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEE
T ss_pred cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEE
Confidence 111110 011136899999996 5555 5798887775332221111 00011124678999999998777
Q ss_pred EEecCCcEE
Q psy17342 375 VGDEKGAIT 383 (401)
Q Consensus 375 ~~~~dg~v~ 383 (401)
+. |+.++
T Consensus 151 v~--dg~ly 157 (236)
T 1tl2_A 151 VH--GQQFY 157 (236)
T ss_dssp EE--TTEEE
T ss_pred Ee--CCcEE
Confidence 66 77654
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.18 Score=42.75 Aligned_cols=107 Identities=8% Similarity=-0.046 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEeecC--Cce-----EEEEEC-----CCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFR--DYV-----MDVQWS-----PINPALFATVEVAGRVDLWNLNLDTEVP 349 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v-----~~v~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 349 (401)
+..+++|+.++++...|+++|+.+.++.... +.+ .+.... ..+. .++.+..+..+.+.+ ++++ ..
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~-~v~ig~~~y~v~~~~-~sG~-~W 187 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN-MIVIGKTIFELGIHS-YDGA-SY 187 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC-EEEEEEEEEECEECC-TTSC-CC
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC-eEEEecceEEEEEEC-CCCC-eE
Confidence 5788899999999999999999999886421 100 011110 1123 566677777787777 4443 33
Q ss_pred ceEEeecCCCCeE-----EEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342 350 ATSAIVEGAPALS-----RVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392 (401)
Q Consensus 350 ~~~~~~~~~~~v~-----~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~ 392 (401)
......-....+. .-..+.|+.+ +.++.||.|.-+|..++..
T Consensus 188 ~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 188 NVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp CCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 3221110000000 0011234555 4477788888888877753
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.44 E-value=1.8 Score=41.05 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=93.7
Q ss_pred CCceEEEEecC----CeEEEEECCCCCCCcee-eccc-cccCCCCcEEEEEEeecC-CceEEEEEeCCC------cEEEe
Q psy17342 130 NPYLILGGTYS----GQIVLWDTRVQKKTPVH-RTPL-SVMAHTHPVFCMSVIGTQ-NAHNLISISNDG------RLCSW 196 (401)
Q Consensus 130 ~~~~l~~g~~d----g~v~iw~~~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg------~i~~w 196 (401)
+..+++.|+.+ ..+.+||..+..-.... ..+. ........ .+++. .. ++..++.|+.++ .+.+|
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTT--ISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEE--ETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEE--EccCCEEEEEcCCCCCCCccccEEEE
Confidence 33566677643 45888888776543222 1000 00111111 22232 23 667777776543 46777
Q ss_pred eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc--eEEEEeCCCCCCCceee---ecCCCCceeeee
Q psy17342 197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG--NVYSACRHGNKAGNVEC---YEGHEGPVVGLS 271 (401)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~---~~~~~~~v~~i~ 271 (401)
|..+.. -.....++. ....-.++.+ .++.+++.|+.++ .+.+||.....-..+.. +........++.
T Consensus 474 d~~t~~-W~~~~~~p~-----~R~~h~~~~~--~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v 545 (695)
T 2zwa_A 474 DMKTRE-WSMIKSLSH-----TRFRHSACSL--PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE 545 (695)
T ss_dssp ETTTTE-EEECCCCSB-----CCBSCEEEEC--TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred eCCCCc-EEECCCCCC-----CcccceEEEE--cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence 776411 111111111 1112222222 2677888887655 68889887543222211 111111112233
Q ss_pred cCccCCCCCCCcEEEEEeC--C-----CeEEEEEeeCCCc-----eEEEeec---CCceEEEEECCCCCcEEEEEecC--
Q psy17342 272 SHRAQGHIDFSHLYLTSSY--D-----WSVKLWNIKENKP-----VHSFNEF---RDYVMDVQWSPINPALFATVEVA-- 334 (401)
Q Consensus 272 ~~~~~~~~~~~~~l~s~~~--d-----~~i~iwd~~~~~~-----~~~~~~~---~~~v~~v~~~~~~~~~l~~~~~d-- 334 (401)
+.... +.+++.|+. + ..+.+||+.+.+- -..+... ...-.+++...++. +++.|+.+
T Consensus 546 ~~~~~-----~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~ 619 (695)
T 2zwa_A 546 FDPVS-----KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPS 619 (695)
T ss_dssp EETTT-----TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSS
T ss_pred EeCCC-----CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCC
Confidence 33321 357777765 2 4588999987761 1122111 11111222333244 77777743
Q ss_pred ------CEEEEEeCCCCC
Q psy17342 335 ------GRVDLWNLNLDT 346 (401)
Q Consensus 335 ------~~i~iwd~~~~~ 346 (401)
..+.+||+.+.+
T Consensus 620 ~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CCCCTTTSEEEEETTTTE
T ss_pred CCCCCCCeEEEEECCCCe
Confidence 468899988754
No 342
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=94.09 E-value=4.5 Score=39.03 Aligned_cols=163 Identities=10% Similarity=0.041 Sum_probs=76.4
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC----CCCcEEEEEEeecCC-ceEEEEEeCCCc
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA----HTHPVFCMSVIGTQN-AHNLISISNDGR 192 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~~~l~s~~~dg~ 192 (401)
.+.|.+|+++|.++..++++...+.|...+=....-.++ ..... ....|.+|++ .|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~----~~~~~~~~~~~~~i~~ia~--dp~~~~~i~~~~g~~~ 87 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPL----NDFIEAQDMNIMGTESIAL--DPNNPDRLYLAQGRYV 87 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEES----CTTCCGGGGGGCSEEEEEE--ETTEEEEEEEEECSCT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeEC----ccCCCcccccCCceeEEEE--CCCCCCEEEEEeCccC
Confidence 468999999998777888887777665444222111111 00000 2346899998 553 334444432211
Q ss_pred ----EEEeeccCCCCCcccccccccc--ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CC
Q psy17342 193 ----LCSWSLEMLSSPQETRDLQYNN--KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GH 263 (401)
Q Consensus 193 ----i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~ 263 (401)
-.||.-...+..-......... .......+..++++|.+.+.++++...+.|+.=+-.+..-+.+.... ..
T Consensus 88 ~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~ 167 (789)
T 1sqj_A 88 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTN 167 (789)
T ss_dssp TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCST
T ss_pred CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCC
Confidence 3344333222111111110000 00011135567888666677777775555543221112211111111 11
Q ss_pred CCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYD 291 (401)
Q Consensus 264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d 291 (401)
...+..+.++|.. +..++.+..+
T Consensus 168 ~~~~~~i~~~p~~-----~~~~~~~~~~ 190 (789)
T 1sqj_A 168 GIGYTSVIFDPER-----NGTIYASATA 190 (789)
T ss_dssp TTCEEEEEECTTS-----TTCEEEEESS
T ss_pred CCCeEEEEECCCC-----CCEEEEEEcC
Confidence 2457788888864 4455555544
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.68 E-value=2 Score=40.71 Aligned_cols=155 Identities=8% Similarity=0.059 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCc------eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--eEEEEEeeCC
Q psy17342 231 DVNNFVVGCEDG------NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--SVKLWNIKEN 302 (401)
Q Consensus 231 ~~~~l~~~~~d~------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~ 302 (401)
++..++.|+.++ .+.+||....+-..+..+......-..+.+. . +.+++.|+.++ .+.+||..+.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~------~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-D------GNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-T------SCEEEECCBCSSCSEEEEETTTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-C------CEEEEECCCCCCCCEEEEECCCC
Confidence 667777776543 4778887654322222221111111122222 2 67888887654 6888888764
Q ss_pred CceEE-----EeecCCceEEEEECCCCCcEEEEEec--C-----CEEEEEeCCCCCC-----CcceEE-eecCCCCeEEE
Q psy17342 303 KPVHS-----FNEFRDYVMDVQWSPINPALFATVEV--A-----GRVDLWNLNLDTE-----VPATSA-IVEGAPALSRV 364 (401)
Q Consensus 303 ~~~~~-----~~~~~~~v~~v~~~~~~~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~~-~~~~~~~v~~~ 364 (401)
+-... +........++.+......+++.|+. + +.+.+||+.+... -..+.. +....... ++
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~ 602 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QI 602 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EE
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eE
Confidence 31111 11111122335555552347777775 2 4689999988762 011111 00111112 22
Q ss_pred EecCCCcEEEEEecC--------CcEEEEEeccCccc
Q psy17342 365 TWTPNGTQLCVGDEK--------GAITMFDVGEVGIA 393 (401)
Q Consensus 365 ~~s~~g~~l~~~~~d--------g~v~iw~~~~~~~~ 393 (401)
....++++++.|+.+ ..|.+||+.+....
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 233337888888743 45999999887654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.08 E-value=5 Score=36.44 Aligned_cols=148 Identities=9% Similarity=0.043 Sum_probs=86.5
Q ss_pred eEEEEeCCCCC--CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeC------CCc-------eE
Q psy17342 243 NVYSACRHGNK--AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKE------NKP-------VH 306 (401)
Q Consensus 243 ~i~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~------~~~-------~~ 306 (401)
.+.+.|.+... ...+..+-.-......+.++|+ +++++.++. +.++.++|+++ .+. +.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPD------Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSD------GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTT------SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCC------CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 35666665311 1112222223344567888998 677666654 88999999874 111 22
Q ss_pred EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC------CCCcceEEeecCCCCeEEEEe------cCCCcEEE
Q psy17342 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD------TEVPATSAIVEGAPALSRVTW------TPNGTQLC 374 (401)
Q Consensus 307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~------s~~g~~l~ 374 (401)
+.+. .-.....+|.++| +.+.+.--|.+|.-|++... +....+.....-+-.+-.+.- .++|++|+
T Consensus 373 e~e~-GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 373 EPEL-GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV 450 (638)
T ss_dssp CCBC-CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred eccC-CCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence 2222 3346779999999 46777778999999998642 222222222222223333333 57899998
Q ss_pred EEe---cCCc----------EEEEEeccCccceeeee
Q psy17342 375 VGD---EKGA----------ITMFDVGEVGIACLKFI 398 (401)
Q Consensus 375 ~~~---~dg~----------v~iw~~~~~~~~~l~~~ 398 (401)
+.. .|.. -++.|+...+++.+.-.
T Consensus 451 ~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~ 487 (638)
T 3sbq_A 451 ALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDG 487 (638)
T ss_dssp EEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEE
T ss_pred EecccccccCcCCCCCCCCcceeEecCCCceEEEecC
Confidence 874 3443 37888877665555443
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.47 E-value=0.52 Score=42.59 Aligned_cols=98 Identities=6% Similarity=-0.013 Sum_probs=66.5
Q ss_pred eEEEEEeeC----CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC------CC---CcceEEeecCCC
Q psy17342 293 SVKLWNIKE----NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD------TE---VPATSAIVEGAP 359 (401)
Q Consensus 293 ~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~---~~~~~~~~~~~~ 359 (401)
.|.+.|.+. +..+..+-.-......+..+|+|+++++++-.+.++.++|++.. +. ...+.....-.-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 467777765 33333332334556789999999988888888999999998741 11 111111122244
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~ 390 (401)
.....+|.++|....+-.-|..|.-|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 5678999999966666778999999999763
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.29 Score=41.53 Aligned_cols=108 Identities=6% Similarity=0.051 Sum_probs=65.7
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEeec-CCceEEEEE--CCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeec-
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQW--SPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVE- 356 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~v~~--~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~- 356 (401)
+.+++.++.||.|.-.|..+|+.+.+++.. ..++....- .+.+...++.. +.||.|..++..++... .....+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc
Confidence 468888999999999999999998888763 122222110 01122244443 57999999998876432 222111
Q ss_pred --CCCCeEE---EEe-----cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 357 --GAPALSR---VTW-----TPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 357 --~~~~v~~---~~~-----s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
...++.. ... +..+..+++|+.+|.+...|+.+|+
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 1112211 000 0145678889999999999998884
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.84 E-value=6 Score=32.53 Aligned_cols=224 Identities=16% Similarity=0.121 Sum_probs=118.5
Q ss_pred CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS 197 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 197 (401)
...|..++.... ..++. . ||.|..|-.......... . .....|..++. . ....++. . ||.|..|-
T Consensus 23 ~~~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p---~---~~~~~i~~ia~--G-~~hs~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 23 QSGVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP---A---ATQSGVDAIAA--G-NYHSLAL-K-DGEVIAWG 87 (282)
T ss_dssp SSSCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC---G---GGGSCCCEEEE--C-SSEEEEE-E-TTEEEEEE
T ss_pred cCCCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC---c---cCCCCEEEEEe--C-CCEEEEE-E-CCEEEEee
Confidence 346778877432 23333 5 899999987654432221 1 11235677765 2 3333444 4 89999998
Q ss_pred ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG 277 (401)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 277 (401)
.....+...... ....|..++.. . ...+.-+ +|.|+.|=...... +-........|..++.-..
T Consensus 88 ~n~~Gqlg~P~~--------~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gq--lg~~~~~~~~i~~i~~G~~-- 151 (282)
T 3qhy_B 88 GNEDGQTTVPAE--------ARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQ--TTVPAEAQSGVTALDGGVY-- 151 (282)
T ss_dssp CCTTSTTCCCGG--------GSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTST--TSCCGGGGSSEEEEEECSS--
T ss_pred CCCCCCCCCCcc--------cCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCc--CCCCccCCCCeEEEEcccC--
Confidence 765333221111 12367777765 2 3333334 99999996543211 1111112345666665543
Q ss_pred CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357 (401)
Q Consensus 278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 357 (401)
..++ -. ||.|..|-....-.+..-..-...|..++..... .++. .||.|..|=.....++... ...
T Consensus 152 -----~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p---~~~ 217 (282)
T 3qhy_B 152 -----TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVP---TEA 217 (282)
T ss_dssp -----EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCC---GGG
T ss_pred -----EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCC---ccc
Confidence 2233 33 7999999765422211111113467777766553 3444 5999999977654433221 112
Q ss_pred CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
...|..++-..... ++.. ||.|+.|=-..
T Consensus 218 ~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 23466666544332 3333 88888886544
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.51 E-value=6.7 Score=32.60 Aligned_cols=139 Identities=7% Similarity=0.012 Sum_probs=71.8
Q ss_pred EeccCCCCeEEEEc----CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEee
Q psy17342 226 AFPQNDVNNFVVGC----EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIK 300 (401)
Q Consensus 226 ~~~~~~~~~l~~~~----~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~ 300 (401)
.++ ++++.|+... .+..|+..++.+.. ...+..+.. ..++|. ++.|.-.+. ...|..-++.
T Consensus 110 ~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~~------g~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YAS-LIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNTS------DRYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEE-EETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEEE------TTEEEEECTTTCCEEEEETT
T ss_pred EEE-EeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeEE------CCEEEEEeCCCceEEEEECC
Confidence 455 4667776654 45567777776443 223333322 455666 455554443 5677777765
Q ss_pred CCCceEEEeecCCceEEEEECCCCCcEEEEEecC-CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec-
Q psy17342 301 ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA-GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE- 378 (401)
Q Consensus 301 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~- 378 (401)
.+... .+.. +... ..++|++..++.+-..+ ..|..-++...... .+ . ...+ ..|+|++.+|+-+..
T Consensus 176 g~~~~-~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~L----t-~~~~--~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 176 SQSEA-LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VL----T-EANI--EHYNVYGSLIFYQRGG 243 (302)
T ss_dssp TTEEE-EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-EC----S-CSCE--EEEEEETTEEEEEECS
T ss_pred CCCEE-EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EE----e-CCCc--ceEEECCCEEEEEECC
Confidence 54433 3322 2222 33568888555554333 35666666654322 21 1 1223 347778887765532
Q ss_pred -CCcEEEEEeccC
Q psy17342 379 -KGAITMFDVGEV 390 (401)
Q Consensus 379 -dg~v~iw~~~~~ 390 (401)
.+.|..-++...
T Consensus 244 ~~~~i~~~~~DG~ 256 (302)
T 3s25_A 244 DNPALCVVKNDGT 256 (302)
T ss_dssp SSCEEEEEETTSC
T ss_pred CCcEEEEEECCCC
Confidence 344555555443
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.62 E-value=9.5 Score=32.99 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=57.9
Q ss_pred ceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeec----------------CCCCceeeeecCccCCCCCCCc
Q psy17342 221 AVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYE----------------GHEGPVVGLSSHRAQGHIDFSH 283 (401)
Q Consensus 221 ~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----------------~~~~~v~~i~~~~~~~~~~~~~ 283 (401)
.|.++++.|.+ ...+.+++..+.|+..+-.+.+-..+.... .....+.+|.+.|.. ..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~-----~~ 190 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD-----PK 190 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC-----TT
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC-----CC
Confidence 57889998555 677777777777766543333222221110 122357788888743 33
Q ss_pred EEEEEeCCCeEEEEEeeCCCceEEEee-----c--------CCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342 284 LYLTSSYDWSVKLWNIKENKPVHSFNE-----F--------RDYVMDVQWSPINPALFATVEVAGRVDLW 340 (401)
Q Consensus 284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~--------~~~v~~v~~~~~~~~~l~~~~~d~~i~iw 340 (401)
.+..+..++.|...+ ..++.-..+.. + ...+.++.++|.....+..+... .|...
T Consensus 191 ~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s 258 (394)
T 3b7f_A 191 HLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRM 258 (394)
T ss_dssp CEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEE
T ss_pred EEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEe
Confidence 444444344443322 12332222211 0 12488999999743355555544 34443
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.79 E-value=14 Score=32.75 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=58.8
Q ss_pred CCCeeEEEEeCCCCceEEEEecCC-eEEEEECCCCCCCceeecccccc--CCCCcEEEEEEeecC----CceEEEEEeC-
Q psy17342 118 QSPVLSCCFAKFNPYLILGGTYSG-QIVLWDTRVQKKTPVHRTPLSVM--AHTHPVFCMSVIGTQ----NAHNLISISN- 189 (401)
Q Consensus 118 ~~~v~~~~~~~~~~~~l~~g~~dg-~v~iw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~----~~~~l~s~~~- 189 (401)
-.....|+|.|++ +++++- ..+ .|++++..++........+-.+. ........|+| +| ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG-~l~V~e-~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~--~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF--HPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE--CTTTTTSCEEEEEEEEE
T ss_pred CCCceEEEEcCCC-cEEEEE-cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEE--CCCcCcCCEEEEEEecc
Confidence 3467799999988 566654 454 68888765443322211111011 13456789999 77 4444444432
Q ss_pred -----------CCcEEEeeccCCCC----CccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342 190 -----------DGRLCSWSLEMLSS----PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239 (401)
Q Consensus 190 -----------dg~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 239 (401)
...|.-+++..... ....+.... .........|+|. +++.++++.+
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~~~~H~~~~l~f~-pDG~Lyv~~G 162 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---SSKDHQSGRLVIG-PDQKIYYTIG 162 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---CCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---CCCCCCCCeEeEC-CCCeEEEEEC
Confidence 23455555532110 111111000 1122357889999 7887666543
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.77 E-value=17 Score=32.42 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=61.8
Q ss_pred cceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-CceEEEe----------cCCCeeEEEEeCC---C
Q psy17342 66 RNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPEFEFF----------CQSPVLSCCFAKF---N 130 (401)
Q Consensus 66 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~----------~~~~v~~~~~~~~---~ 130 (401)
..-..|+|.|+|. .|+++. ..|.|++++...... .+...+. .......|+|+|+ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e----------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE----------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE----------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred CCceEEEECCCCCeEEEEEe----------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 3478899999996 577777 689999997643211 1111111 1356889999995 2
Q ss_pred CceEEEEec--C----------CeEEEEECCCCC--------CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC
Q psy17342 131 PYLILGGTY--S----------GQIVLWDTRVQK--------KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND 190 (401)
Q Consensus 131 ~~~l~~g~~--d----------g~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 190 (401)
..+.++-+. + ..|.-|.+.... ...+...+.....| ....|.| .|++.+.++.+..
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~f--gpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLF--GPDGFLYIILGDG 159 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEE--CTTSCEEEEECCT
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeE--CCCCcEEEEeCCC
Confidence 233333221 1 134446654321 01111111111234 4678888 8999877776654
Q ss_pred C
Q psy17342 191 G 191 (401)
Q Consensus 191 g 191 (401)
+
T Consensus 160 ~ 160 (463)
T 2wg3_C 160 M 160 (463)
T ss_dssp T
T ss_pred C
Confidence 3
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.67 E-value=13 Score=30.94 Aligned_cols=250 Identities=6% Similarity=0.024 Sum_probs=122.3
Q ss_pred cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-------------
Q psy17342 74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS------------- 140 (401)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------------- 140 (401)
++++..|...... .++.|...+.+ +.....+ .. . .+-.+++++..+..+...+
T Consensus 22 ~~~g~~iy~~n~~--------d~~~ly~~~~d-g~~~~~l-~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 22 CESDGEVFFSNTN--------DNGRLYAMNID-GSNIHKL-SN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp EEETTEEEEEEGG--------GTTEEEEEETT-SCSCEEE-EE--E--EEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred EEeCCEEEEEeCC--------CCceEEEEcCC-CCCCEEc-cC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 3567777776621 24566666655 3323222 22 1 2345578775555555443
Q ss_pred CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCC
Q psy17342 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTK 218 (401)
Q Consensus 141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 218 (401)
..|+..+++..+...+ ...... .+ +++++.|+-.. .++.-.|+.+...+..... +.. +
T Consensus 88 ~~Iy~i~~dg~~~~~l---------~~~~~~--~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~--lt~-----~ 147 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVL---------DPDPCI--YA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--IKN-----H 147 (302)
T ss_dssp EEEEEEETTSCCCEEE---------ECSCEE--EE--EEETTEEEEEEESSSSCEEEEEEETTSCCCEE--EES-----S
T ss_pred CeEEEEeCCCCcceEe---------ecCCcc--EE--EEeCCEEEEEeecCCCCceEEEEECCCCCeEE--EeC-----C
Confidence 4577777776653221 112222 34 45777777665 4555555555432322221 111 1
Q ss_pred ccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC--CeEE
Q psy17342 219 NLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD--WSVK 295 (401)
Q Consensus 219 ~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d--~~i~ 295 (401)
.+ .+++ ++++.|+..+. ...|++.++.+...+. .+. +... ..+.|. +.+|+-...+ ..|.
T Consensus 148 --~~--~~~~-~~g~~iy~t~~g~~~Iy~~~l~g~~~~~--l~~---~~~~-~~~~P~------g~~iy~t~~~~~~~I~ 210 (302)
T 3s25_A 148 --YL--FTCN-TSDRYFYYNNPKNGQLYRYDTASQSEAL--FYD---CNCY-KPVVLD------DTNVYYMDVNRDNAIV 210 (302)
T ss_dssp --CC--CCSE-EETTEEEEECTTTCCEEEEETTTTEEEE--EEC---SCEE-EEEEEE------TTEEEEEEGGGTTEEE
T ss_pred --Cc--eEee-EECCEEEEEeCCCceEEEEECCCCCEEE--EeC---CCcc-ceeeec------CCEEEEEEcCCCcEEE
Confidence 11 3455 45666665554 6778888877543222 222 2222 234577 4565555433 3455
Q ss_pred EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342 296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374 (401)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 374 (401)
.-++... ....+.. ..+ ..|+|++..++.+. ...+.|..-++..... ..+. .. .+. .+++.+.+|+
T Consensus 211 ~~~ldG~-~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~--~~---~~~--~i~i~~d~Iy 277 (302)
T 3s25_A 211 HVNINNP-NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELA--KG---EFC--NINVTSQYVY 277 (302)
T ss_dssp EECSSSC-CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEE--ES---CEE--EEEECSSEEE
T ss_pred EEECCCC-CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEee--CC---ccc--eEEEeCCEEE
Confidence 5555433 3344432 233 33778887554432 2345677777764332 2322 11 233 3455666666
Q ss_pred EEe-cCCcEEEEEe
Q psy17342 375 VGD-EKGAITMFDV 387 (401)
Q Consensus 375 ~~~-~dg~v~iw~~ 387 (401)
-.. ..+.|..-++
T Consensus 278 ~td~~~~~i~~~~~ 291 (302)
T 3s25_A 278 FTDFVSNKEYCTST 291 (302)
T ss_dssp EEETTTCCEEEEES
T ss_pred EEECCCCeEEEEEC
Confidence 554 3455554443
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.18 E-value=16 Score=31.58 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=72.9
Q ss_pred cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecC-C--------CCceeeeecCccCCCCCCCcEEEEEe
Q psy17342 220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEG-H--------EGPVVGLSSHRAQGHIDFSHLYLTSS 289 (401)
Q Consensus 220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~-~--------~~~v~~i~~~~~~~~~~~~~~l~s~~ 289 (401)
..+.+|.+.|.+...++++..++.|+..+-.+.+-..+.. ... + ...+.++.+.|.. ...+..+.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~-----~~~l~vg~ 251 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAA-----PDILYQQN 251 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSS-----TTEEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCC-----CCEEEEEc
Confidence 4678899985456667777666666554333222111100 000 0 1247888888864 45666666
Q ss_pred CCCeEEEEEeeCCCceEEEee--cC---CceEEEEECCCCCcEEEEEec-----------CCEEEEEeCCCCCCCcc-eE
Q psy17342 290 YDWSVKLWNIKENKPVHSFNE--FR---DYVMDVQWSPINPALFATVEV-----------AGRVDLWNLNLDTEVPA-TS 352 (401)
Q Consensus 290 ~d~~i~iwd~~~~~~~~~~~~--~~---~~v~~v~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~-~~ 352 (401)
..+ |...+ ..++.-..+.. .. ..+.+++++|..+..+..+.. ++...+|....+..... +.
T Consensus 252 ~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~ 329 (394)
T 3b7f_A 252 HCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD 329 (394)
T ss_dssp TTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred CCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence 444 43332 12222111111 11 345678888743223444321 23345665554322111 11
Q ss_pred EeecCCC-----CeEEEEecCC-CcEEEEEecCCcEE
Q psy17342 353 AIVEGAP-----ALSRVTWTPN-GTQLCVGDEKGAIT 383 (401)
Q Consensus 353 ~~~~~~~-----~v~~~~~s~~-g~~l~~~~~dg~v~ 383 (401)
...+... ....++++|. ...|+.++.++.|.
T Consensus 330 ~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 330 RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 0011111 1135778774 34566666555443
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.12 E-value=22 Score=31.59 Aligned_cols=260 Identities=10% Similarity=0.052 Sum_probs=123.2
Q ss_pred CCeeEEEEeCCCC-ceEEEEecCCeEEEEECCCCC-CCceeecccccc-----CCCCcEEEEEEeecCC----ceEEEEE
Q psy17342 119 SPVLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQK-KTPVHRTPLSVM-----AHTHPVFCMSVIGTQN----AHNLISI 187 (401)
Q Consensus 119 ~~v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~-~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~----~~~l~s~ 187 (401)
.....|+|.|++. +++++ ...|.|++++..... .......+..+. ........|++ +|+ +.+.++-
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~--~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAF--HPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEE--CTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEe--CCCCcCCCEEEEEE
Confidence 4567899999884 35554 578999999754321 111111111111 12456788998 765 3444433
Q ss_pred eC--C----------CcEEEeeccCCC-------CCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-------
Q psy17342 188 SN--D----------GRLCSWSLEMLS-------SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------- 241 (401)
Q Consensus 188 ~~--d----------g~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 241 (401)
+. + ..|.-|.+.... .....+.+.. .........|+|. +|+.+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fg-pDG~LYv~~Gd~~~~~~~~ 166 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFG-PDGFLYIILGDGMITLDDM 166 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEEC-TTSCEEEEECCTTCCHHHH
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeEC-CCCcEEEEeCCCCCCCCcc
Confidence 32 1 134445554211 1111122111 1123346789999 788776655432
Q ss_pred ----------ceEEEEeCCCCC------C------------CceeeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCC
Q psy17342 242 ----------GNVYSACRHGNK------A------------GNVECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDW 292 (401)
Q Consensus 242 ----------~~i~~~~~~~~~------~------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~ 292 (401)
|.|.-.+..... . ....--.+|..+ ..++|+|..+... +. ++..+...+
T Consensus 167 ~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp-~gla~dp~tg~~~-G~l~~~~~D~~G 244 (463)
T 2wg3_C 167 EEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDP-GRCAVDRHPTDIN-INLTILCSDSNG 244 (463)
T ss_dssp HHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSC-CBEEEESSCSSTT-CSEEEEEECC--
T ss_pred ccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCc-ceEEECCCCCCcc-cceEEEecccCC
Confidence 335445554320 0 001111245444 4788888631000 12 343332111
Q ss_pred ----eEEEEEeeCC------CceEEEeecC-CceEEEEECCC-------CCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342 293 ----SVKLWNIKEN------KPVHSFNEFR-DYVMDVQWSPI-------NPALFATVEVAGRVDLWNLNLDTEVPATSAI 354 (401)
Q Consensus 293 ----~i~iwd~~~~------~~~~~~~~~~-~~v~~v~~~~~-------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 354 (401)
.-.|..+..+ .++..+..|. ..+..+.|-.. +. +|+ +...+.|....+............
T Consensus 245 ~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~-~~~~g~i~~~~~~~~~~~~~~~~~ 322 (463)
T 2wg3_C 245 KNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVF-GDRNGNFLTLQQSPVTKQWQEKPL 322 (463)
T ss_dssp ----CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEE-EETTSCEEEEEC-----CCEEEEE
T ss_pred CCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEE-ecCCCcEEEEEeCCCCceeeEEEe
Confidence 2234444333 3555555432 46778887543 22 444 444466665555543222111111
Q ss_pred e---------cCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEecc
Q psy17342 355 V---------EGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGE 389 (401)
Q Consensus 355 ~---------~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~ 389 (401)
. .....+..+...|||.++++.... ..=+||.+..
T Consensus 323 ~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 323 CLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp CEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred ecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 0 113468999999999887776521 2346777763
No 355
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.13 E-value=18 Score=29.60 Aligned_cols=162 Identities=12% Similarity=0.074 Sum_probs=92.7
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeC---cCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEecCC
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT---KFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGTYSG 141 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~dg 141 (401)
+.+..+.-.....+|+..+ ..|.++--.+ ....... + +.....|..+.. ++ ....++..+.+|
T Consensus 24 D~~~~~~~~~t~~~ll~fT----------~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVS----------NRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKG 90 (276)
T ss_dssp CCEEEEEEEETTSCEEEEE----------TTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred CeEEEEEEECCCCEEEEEc----------CCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence 4566665555566777777 6887765433 2221111 2 444567777754 42 335777888999
Q ss_pred eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC------Cccccccccccc
Q psy17342 142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS------PQETRDLQYNNK 215 (401)
Q Consensus 142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~~~~ 215 (401)
.++-..+..-.....-...+.+.. .+.+..+.. ......++..+..|.+..+....... ....+.+
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L----- 162 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL----- 162 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-----
T ss_pred EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-----
Confidence 999998765431000011122333 345555554 44556788888999988887653211 1111111
Q ss_pred cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250 (401)
Q Consensus 216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~ 250 (401)
. ....|..+... .++..++..+..|.+....+.
T Consensus 163 ~-~~d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 163 E-KNDETSGLRIW-NGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp C-TTCCEEEEEEE-SSCSEEEEEETTSCEEEEEGG
T ss_pred C-CCCEEEEEEEe-CCCCEEEEEeCCCcEEEeEHH
Confidence 1 23456655554 456688888999998877654
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.38 E-value=34 Score=32.42 Aligned_cols=247 Identities=8% Similarity=0.039 Sum_probs=121.2
Q ss_pred eEEEE-ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-CC------CeeEEEEeCCCCceEEEE--
Q psy17342 68 VTYMD-WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QS------PVLSCCFAKFNPYLILGG-- 137 (401)
Q Consensus 68 v~~~~-~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~~l~~g-- 137 (401)
...+. ++|++++++.+-- ..|+.-..++++|+.+++.+..-.... .. ....++|.. +..++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls-----~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~ 204 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMS-----FGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVL 204 (711)
T ss_dssp EEEEEECSSSTTEEEEEEE-----ETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCC
T ss_pred EeceeecCCCCCEEEEEeC-----CCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCC
Confidence 44455 8999987766651 123445689999999876553211110 00 113447764 33444432
Q ss_pred --------ecCCeEEEEECCCCCCCceeeccccccCCCCcE-EEEEEeecCCce-----EEEEEeCC---CcEEEeeccC
Q psy17342 138 --------TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV-FCMSVIGTQNAH-----NLISISND---GRLCSWSLEM 200 (401)
Q Consensus 138 --------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~-----~l~s~~~d---g~i~~wd~~~ 200 (401)
.....|+.|.+-+...... +.+.+....+ ..... +.++. .+++.+.+ ..+.+.+...
T Consensus 205 ~~~~~~~~~~~~~v~~~~~Gt~~~~~~----~v~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 205 HKNEITSSLYPNSLYIWKRGESIEKAK----KLFEVPKEYIYVSAGK--LLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp STTCBCTTSSBCEEEEEETTSCGGGCE----EEEECCTTSCEEEEEE--SSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred CCCCcCcCCCCCEEEEEECCCChHHCe----EEeccCCCceEEEEEE--ecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 1224688888776543211 1122222222 22222 44544 34544423 2344445432
Q ss_pred CCCCccccccccccccCCccceEEEEeccCCCCeEEEE----------cCCceEEEEeCCCCC-----CCceee-ec-CC
Q psy17342 201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG----------CEDGNVYSACRHGNK-----AGNVEC-YE-GH 263 (401)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~~~~~~~~-----~~~~~~-~~-~~ 263 (401)
.... ...+.. ..... +... .++.+++.. ...+.|...++.... ...... +. ..
T Consensus 279 ~~~~--~~~l~~----~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 279 KNLK--LQKINM----PSDAT---LQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA 348 (711)
T ss_dssp SSCE--EEECCS----CTTCE---EEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred CCCc--ceEeec----CCcce---Eeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence 1111 111111 01111 1122 233333322 246678888876421 111222 22 23
Q ss_pred CCceeeeecCccCCCCCCCcEEEEEeCCCe--EEEEEeeCCC-ceEE-Eeec-CCceEEEEECCCCCcEEEEEecC---C
Q psy17342 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWS--VKLWNIKENK-PVHS-FNEF-RDYVMDVQWSPINPALFATVEVA---G 335 (401)
Q Consensus 264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~-~~~~-~~~~-~~~v~~v~~~~~~~~~l~~~~~d---~ 335 (401)
...+..+.+..+ .++++...++. +.++|+.+++ .... +... .+.+.....++++..++++.+.. +
T Consensus 349 ~~~l~~~~~~~~-------~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~ 421 (711)
T 4hvt_A 349 NEVFNFISTTKD-------RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPP 421 (711)
T ss_dssp TEEEEEEEECSS-------CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCC
T ss_pred CCeEEEEEEECC-------EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCC
Confidence 345677887764 57777776764 6777777664 2333 3221 34577777778876666665432 5
Q ss_pred EEEEEeCC
Q psy17342 336 RVDLWNLN 343 (401)
Q Consensus 336 ~i~iwd~~ 343 (401)
.+..+|+.
T Consensus 422 ~~~~~d~~ 429 (711)
T 4hvt_A 422 TIYLWVKT 429 (711)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 78888876
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.18 E-value=21 Score=29.79 Aligned_cols=198 Identities=12% Similarity=0.115 Sum_probs=107.1
Q ss_pred CCceEEEEEeCCCcEEEeeccCCCCCcc------ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC
Q psy17342 179 QNAHNLISISNDGRLCSWSLEMLSSPQE------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN 252 (401)
Q Consensus 179 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 252 (401)
++...+++.+.+|.|+--.+........ .+.+. ....+..+... .....++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk------e~D~l~~~~~~-~~~~~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN------DGDEIVIALCV-NTHDYLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC------TTCCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC------CCCEEEEEEEE-CCCCEEEEEECCCeEEEEEHHHC
Confidence 4667889999999999887764322111 11111 22334444444 35567778888898877654311
Q ss_pred C-------CCc---eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-------CceEEEeecCCce
Q psy17342 253 K-------AGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-------KPVHSFNEFRDYV 315 (401)
Q Consensus 253 ~-------~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v 315 (401)
. +.+ ...+.. ...|.++...+... . ...++..+..|.++.-.+..- .....+.. ...+
T Consensus 79 p~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~--~-~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 79 KDSSRASKGQNISELINLGD-QEEILTIKNSKDLT--D-DAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFV 153 (312)
T ss_dssp CC-------CBGGGTSCCCT-TCCEEEEEEESCCC--T-TCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCE
T ss_pred CCCCccCCCcChhhccCCCC-CCEEEEEEEeccCC--C-CCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEE
Confidence 0 000 111221 22344442222100 0 467778888999998877432 22222333 3455
Q ss_pred EEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc-----eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA-----TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 316 ~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
..+....... .++..+.+|.+..+....-..... ..........|..+..-.++..|++.+..|..+..++..
T Consensus 154 v~~~~~~~~~-~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 154 TSAEIVFKDE-KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEECTTC-EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5555544344 466677899998888754211111 111122345566665555666788888899888888754
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=80.56 E-value=40 Score=31.98 Aligned_cols=102 Identities=8% Similarity=-0.012 Sum_probs=57.6
Q ss_pred CCCeEEEEEeeCCC-------ceEE-Eee-cCCceEEEEECCCCCcEEEEEecCCE--EEEEeCCCCC-CCcceEEeecC
Q psy17342 290 YDWSVKLWNIKENK-------PVHS-FNE-FRDYVMDVQWSPINPALFATVEVAGR--VDLWNLNLDT-EVPATSAIVEG 357 (401)
Q Consensus 290 ~d~~i~iwd~~~~~-------~~~~-~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~--i~iwd~~~~~-~~~~~~~~~~~ 357 (401)
..+.|...|+.++. .... +.. ....+..+.|..+. ++++...++. |.++|+.++. ....+ ...+.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~g~~~~~~~-i~lp~ 394 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR--VFLATYDNVVAKVVTFTLENEQWTKPVV-LKLPY 394 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--EEEEEEETTEEEEEEECEETTEECCCEE-ECCCS
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--EEEEEEECCEEEEEEEECCCCceEEEec-cCCCC
Confidence 46778888887642 2233 322 23467788888763 7788777775 6667765553 11210 11222
Q ss_pred CCCeEEEEecCCCcEE-EEEec---CCcEEEEEeccCcccee
Q psy17342 358 APALSRVTWTPNGTQL-CVGDE---KGAITMFDVGEVGIACL 395 (401)
Q Consensus 358 ~~~v~~~~~s~~g~~l-~~~~~---dg~v~iw~~~~~~~~~l 395 (401)
...+.....++++..+ ++.+. -+.+..+|+. ++.+.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l 435 (711)
T 4hvt_A 395 QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKII 435 (711)
T ss_dssp TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEE
T ss_pred CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEE
Confidence 3456667777776544 33332 3567777776 443333
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.88 E-value=39 Score=28.37 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=120.8
Q ss_pred ceEEEEecCCeEEEEECCCCCCCc---eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee---ccCCCCC-
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTP---VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS---LEMLSSP- 204 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd---~~~~~~~- 204 (401)
..+++-+.+|.|+--.+.+..... .-...+.+. ..+.+..+.. ....+.++.-+..|.+.... +......
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~--~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~ 80 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFV--CSTHDLILFFTTQGRVYRAKAYDLPEASRTA 80 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEE--EETTSEEEEEETTSEEEEEEGGGSCBCCSSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEE--eCCCCEEEEEeCCCeEEEEEHHHCcCCCccC
Confidence 466677788888866543211100 000001112 2334444443 33444566566777655444 3322111
Q ss_pred --ccccccccccccCCccceEEEEeccC--CCCeEEEEcCCceEEEEeCCCCCC-----CceeeecCCCCceeeeecCcc
Q psy17342 205 --QETRDLQYNNKQTKNLAVLSLAFPQN--DVNNFVVGCEDGNVYSACRHGNKA-----GNVECYEGHEGPVVGLSSHRA 275 (401)
Q Consensus 205 --~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~ 275 (401)
.....+.. + .....|..+...+. +...++..+.+|.++...+..... .....+.. .+.+..+.....
T Consensus 81 ~G~~i~~~l~--l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~ 156 (327)
T 3uc1_A 81 RGQHVANLLA--F-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSA 156 (327)
T ss_dssp CCEEHHHHTT--C-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECT
T ss_pred CCEEHHHccC--C-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecC
Confidence 11101111 1 13345555543312 577899999999999876543211 11122332 233444433333
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEEee--CC----C-----ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 276 QGHIDFSHLYLTSSYDWSVKLWNIK--EN----K-----PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 276 ~~~~~~~~~l~s~~~d~~i~iwd~~--~~----~-----~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
...++..+..|.+..+... .- + ....+.. ...|.++...+.+. .++..+..|.++.-.+..
T Consensus 157 ------~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 157 ------GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGT-YLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp ------TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTC-EEEEEETTSEEEEEEGGG
T ss_pred ------CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHH
Confidence 3567777778988888766 21 1 1112222 44566666655554 567778899999887654
Q ss_pred CCCC-----cceEEeecC-CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 345 DTEV-----PATSAIVEG-APALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 345 ~~~~-----~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
-... ......... ...+..+....+...++..+.+|.+..+++..
T Consensus 229 ~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 229 YPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 3221 111111111 23454444444445666677778777776643
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.12 E-value=14 Score=36.45 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342 359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF 397 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~ 397 (401)
..+.+++..++..++++-+.|+++++|++.++ +++.+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~--~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTN--QCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTT--EEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCC--CeEee
Confidence 35677888888899999999999999999998 45544
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.32 E-value=43 Score=28.14 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=91.8
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeC---cCCCC--Cce-----EEEecCCCeeEEEEeCC--CCce
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT---KFKKT--TPE-----FEFFCQSPVLSCCFAKF--NPYL 133 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~---~~~~~--~~~-----~~~~~~~~v~~~~~~~~--~~~~ 133 (401)
+.+..+.-......|+.-+ ..|.++-... ..... ... +.+.....|.++..-++ ....
T Consensus 42 D~~~~~~~~~t~d~ll~fT----------~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~ 111 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFT----------TQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPY 111 (327)
T ss_dssp GCEEEEEEEETTSEEEEEE----------TTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSE
T ss_pred CEEEEEEEeCCCCEEEEEe----------CCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCE
Confidence 4455555555555666666 5777665543 22210 000 11223456666655442 2357
Q ss_pred EEEEecCCeEEEEECCCCCCCce-eeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc--CCC---CCccc
Q psy17342 134 ILGGTYSGQIVLWDTRVQKKTPV-HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE--MLS---SPQET 207 (401)
Q Consensus 134 l~~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~---~~~~~ 207 (401)
++..+.+|.++--.+..-..... -...+.+.. .+.+..+.. ......++..+..|.+..+... ... ....-
T Consensus 112 ~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~--~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 112 LVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVL--CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp EEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEE--ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC
T ss_pred EEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEE--ecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC
Confidence 88888999999988765332111 111123344 345555544 3445678888889998887766 321 11111
Q ss_pred cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250 (401)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~ 250 (401)
..+.. + .....|.++... +....++..+..|.++.-.+.
T Consensus 189 v~~i~--L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 189 VQGMR--F-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EESSC--C-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGG
T ss_pred eeeec--C-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHH
Confidence 11111 1 134456666665 455688899999998876654
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=72.17 E-value=39 Score=27.59 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=111.1
Q ss_pred CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175 (401)
Q Consensus 96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (401)
||.|..|-......+.. .......|..++.... ..++. . ||.|..|-......... |... ...|..++.
T Consensus 41 ~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~---P~~~---~~~v~~ia~ 109 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV---PAEA---RSGVDAIAA 109 (282)
T ss_dssp TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC---CGGG---SSSEEEEEE
T ss_pred CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC---Cccc---CCCeEEEEC
Confidence 68888887654222211 1112346777877542 33444 4 89999998765433222 1111 246778875
Q ss_pred eecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC
Q psy17342 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG 255 (401)
Q Consensus 176 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 255 (401)
... +.+.-. ||.|..|-.....+..... .....|..++.. . ...++. . +|.++.|-......
T Consensus 110 --G~~--hs~al~-~G~v~~wG~n~~gqlg~~~--------~~~~~i~~i~~G-~-~~~~~l-~-~G~v~~wG~n~~gq- 171 (282)
T 3qhy_B 110 --GAW--ASYALK-DGKVIAWGDDSDGQTTVPA--------EAQSGVTALDGG-V-YTALAV-K-NGGVIAWGDNYFGQ- 171 (282)
T ss_dssp --ETT--EEEEEE-TTEEEEEECCTTSTTSCCG--------GGGSSEEEEEEC-S-SEEEEE-E-TTEEEEEECCTTST-
T ss_pred --cCC--EEEEEe-CCeEEEecCCCCCcCCCCc--------cCCCCeEEEEcc-c-CEEEEE-E-CCEEEEecCCCCCC-
Confidence 322 333334 9999999766433221111 123457777654 2 223333 3 79999996543211
Q ss_pred ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC
Q psy17342 256 NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG 335 (401)
Q Consensus 256 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~ 335 (401)
+.....-...|..++.-.. ..++. .||.|..|=....-.+..-......|..|+..... .++.. ||
T Consensus 172 -lg~p~~~~~~v~~i~~G~~-------hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g 237 (282)
T 3qhy_B 172 -TTVPAEAQSGVDDVAGGIF-------HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NG 237 (282)
T ss_dssp -TSCCGGGGSSEEEEEECSS-------EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TT
T ss_pred -CCCceecCCCeEEEEecCC-------EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CC
Confidence 1111111345777766543 34444 49999999764421111101112356777765543 33333 99
Q ss_pred EEEEEeCCCCCCC
Q psy17342 336 RVDLWNLNLDTEV 348 (401)
Q Consensus 336 ~i~iwd~~~~~~~ 348 (401)
.|..|=.....+.
T Consensus 238 ~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 238 KVIAWGSSRTAPS 250 (282)
T ss_dssp EEEEESTTCCCCG
T ss_pred EEEEecCCCCccc
Confidence 9999977665443
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.60 E-value=82 Score=31.12 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=29.2
Q ss_pred eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe
Q psy17342 267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN 309 (401)
Q Consensus 267 v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 309 (401)
+.++...++ ..++++-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~~~~~~~------~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLST------YNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETT------TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCC------CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 455555554 4788999999999999999998887754
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.77 E-value=59 Score=27.97 Aligned_cols=180 Identities=9% Similarity=0.069 Sum_probs=97.7
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCC---C---CCCcEEEEEeCcCC--CCCceEEEec-----CCCeeEEEEe---CC
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAP---N---EPDGVCLIWNTKFK--KTTPEFEFFC-----QSPVLSCCFA---KF 129 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~---~---~~d~~v~iwd~~~~--~~~~~~~~~~-----~~~v~~~~~~---~~ 129 (401)
-.|..+...+++ .|.+.-.+...+.. . ....+|.+||+.++ +.+.++.+.. .+.+..+.+. |.
T Consensus 87 vsV~~v~iD~~~-rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 87 TSIYQPVIDDCR-RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SCEEEEEECTTC-EEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred EEeeEEEEcCCC-cEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 458888888877 45555544322211 0 23458999999998 8887777652 3457888887 22
Q ss_pred ---CCceEEEE-ecCCeEEEEECCCCCCCceeecccc--------ccCC----CCcEEEEEEeecCC----ceEEEEEeC
Q psy17342 130 ---NPYLILGG-TYSGQIVLWDTRVQKKTPVHRTPLS--------VMAH----THPVFCMSVIGTQN----AHNLISISN 189 (401)
Q Consensus 130 ---~~~~l~~g-~~dg~v~iw~~~~~~~~~~~~~~~~--------~~~~----~~~v~~~~~~~~~~----~~~l~s~~~ 189 (401)
+..++... +..+-|.|+|+.+++.-.+...... ..+. ...|..|+. +|+ +..|.-...
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaL--sp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITL--GDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEE--CCCCTTSCCEEEEEES
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEe--cCCcCCCCeEEEEEEC
Confidence 12344433 3467799999988765332211000 0111 246777777 665 556665555
Q ss_pred CCcEEEeeccC--CCCC--ccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC
Q psy17342 190 DGRLCSWSLEM--LSSP--QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG 251 (401)
Q Consensus 190 dg~i~~wd~~~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 251 (401)
.+. ++|.+.+ +... ...++... ..+....-..+++.+.++.++++--....|..|+...
T Consensus 244 ss~-~ly~V~T~~L~~~~~~~~v~~~G--~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 244 SAI-KVYSVNTKELKQKGGKLNPELLG--NRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SCS-EEEEEEHHHHSSTTCCCCCEEEE--ECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCC-cEEEEEHHHhhCcchhhceEEee--ecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 442 3333321 1111 11111111 1111123344556435677777777888899998764
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.38 E-value=1.3e+02 Score=30.55 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=29.1
Q ss_pred CeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF 397 (401)
Q Consensus 360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~ 397 (401)
.+.+++..++..+|++-+.|++++||++.++ +|+.+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~--~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN--QCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT--EEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC--CeEEe
Confidence 3455666778899999999999999999998 55554
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.12 E-value=23 Score=32.67 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=38.2
Q ss_pred eEEEEECCCCCcEEEEEecC------------CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342 315 VMDVQWSPINPALFATVEVA------------GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG 376 (401)
Q Consensus 315 v~~v~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 376 (401)
.-.|+|+|.|. |+++-..+ +.+.+.+..+++....+. .+....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~--~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe--CCCCccCcCeeECCCCCEEEEE
Confidence 45789999997 55543221 245555665555333222 2345789999999999988765
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.99 E-value=76 Score=26.26 Aligned_cols=243 Identities=11% Similarity=0.003 Sum_probs=117.7
Q ss_pred CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-------CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342 75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-------TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147 (401)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~ 147 (401)
|+...+++.+ .+|.|+--.+..-+. .....+.....+..+...... ..|+..+..|.+.-..
T Consensus 1 ~~e~~~v~~T----------~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~-~~ll~fT~~G~~~~~~ 69 (307)
T 1zi0_A 1 TQEDVVVTLS----------HQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTH-DHILCFSSRGRVYSMK 69 (307)
T ss_dssp CCCEEEEEEE----------TTSEEEEEECC--------------------CCEEEEEEEETT-CEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEe----------CCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCC-CEEEEEECCCEEEEEE
Confidence 3445677777 789988776653211 111122234455554444434 3444445788866655
Q ss_pred CCC---CCC--Cceee-ccccccCCCCcEEEEEEee-cCCceEEEEEeCCCcEEEeeccCCCCCc----ccccccccccc
Q psy17342 148 TRV---QKK--TPVHR-TPLSVMAHTHPVFCMSVIG-TQNAHNLISISNDGRLCSWSLEMLSSPQ----ETRDLQYNNKQ 216 (401)
Q Consensus 148 ~~~---~~~--~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~ 216 (401)
... ... ..... ..+.+ .....|.++.... ..++.+++..+.+|.++.-.+....... ..+.+ .
T Consensus 70 ~~elp~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-----~ 143 (307)
T 1zi0_A 70 VYQLPEATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-----V 143 (307)
T ss_dssp GGGSCCCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-----C
T ss_pred hhHCcCCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-----C
Confidence 432 211 11100 11122 2344566654321 1345678899999999998875432221 11111 1
Q ss_pred CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342 217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS 289 (401)
Q Consensus 217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~ 289 (401)
.. ..+-.+... .....++..+.+|.+..+....-. +.....+. ....|.++...+. ...+++.+
T Consensus 144 ~~-d~lv~~~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~------~~~ll~~T 214 (307)
T 1zi0_A 144 DG-DELIGVDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRG------DGAILTAT 214 (307)
T ss_dssp TT-CCEEEEEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCS------SCEEEEEE
T ss_pred CC-CEEEEEEEe-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecC------CCEEEEEE
Confidence 13 445454444 345567788888888777653211 00111122 2344555554433 35678888
Q ss_pred CCCeEEEEEeeCCC---------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342 290 YDWSVKLWNIKENK---------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344 (401)
Q Consensus 290 ~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~ 344 (401)
..|.++-.++..-. ....+...++.+..+....+.. -++..+.+|.+.-+....
T Consensus 215 ~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~-~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 215 QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD-QIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEEESSCCEEEEEGGG
T ss_pred cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc-eEEEEcCCCcEEEEeccc
Confidence 88988888773311 1111222224444444333333 234445566666556544
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.13 E-value=23 Score=32.64 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=39.2
Q ss_pred eEEEEecCCCCCeEEEEeccCC---CCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEE
Q psy17342 68 VTYMDWSTQHPELLLASYHRNK---EAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILG 136 (401)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~---~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 136 (401)
.--|+|+|.|. |+.+.-+... ....-....+.+.+..+++..+.........++.++|+|++..+++.
T Consensus 478 PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35588999996 5555521100 00001124566667766665443433456789999999988554443
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.80 E-value=83 Score=26.02 Aligned_cols=242 Identities=10% Similarity=0.033 Sum_probs=118.1
Q ss_pred ceEEEEecCCeEEEEECCCCCCCce---eeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc---CCCCCc
Q psy17342 132 YLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE---MLSSPQ 205 (401)
Q Consensus 132 ~~l~~g~~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~ 205 (401)
..+++.+.+|.|+--.+..-+.... ....+.+... +.+..+.. ....+.++..+..|.+.-+... ..+...
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~--~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLV--ANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEE--EETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEE--ECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4677778999998777654322110 0001112222 33433333 3345566777788876655443 221111
Q ss_pred ccc---ccccccccCCccceEEEEecc--CCCCeEEEEcCCceEEEEeCCCCC-----CCceeeecCCCCceeeeecCcc
Q psy17342 206 ETR---DLQYNNKQTKNLAVLSLAFPQ--NDVNNFVVGCEDGNVYSACRHGNK-----AGNVECYEGHEGPVVGLSSHRA 275 (401)
Q Consensus 206 ~~~---~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~ 275 (401)
.-. .+.. + .....|..+...+ .+..+++..+.+|.++...+.... ......+..+ +.+..+.....
T Consensus 81 ~G~~i~~~l~--l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 81 RGRPIVNLLP--L-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp CCEEGGGTSC--C-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECT
T ss_pred CCeEhhhccC--C-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCC
Confidence 111 1111 1 1334455553321 245678999999999887654211 1111123333 44444433332
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEEeeCCCc---------eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342 276 QGHIDFSHLYLTSSYDWSVKLWNIKENKP---------VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346 (401)
Q Consensus 276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 346 (401)
...++..+.+|.+..++...-.. ...+.. ...|.++...+++. .++..+..|.++-.++..-.
T Consensus 157 ------~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~-~ll~~T~~G~~Kr~~~~e~~ 228 (307)
T 1zi0_A 157 ------EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE-GDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYP 228 (307)
T ss_dssp ------TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEECCCSSC-EEEEEETTSEEEEECGGGSC
T ss_pred ------CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC-CCEEEEEEEecCCC-EEEEEEcCCceEEEEHHHhc
Confidence 35666777788888887643111 112222 44566666555554 56777889999988774322
Q ss_pred CC-------cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 347 EV-------PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 347 ~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.. ..+.. ......+..+....+..-|+..+.+|.+.-+++..
T Consensus 229 ~~~Rg~kG~~~~~~-~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 229 TKSRATKGVISIKV-TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCTTSCCEESSCC-CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred cCCCCCCCEEeeEe-cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 11111 11224454444433445566677777776666654
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.22 E-value=50 Score=30.22 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=37.9
Q ss_pred ceEEEEECCCCCcEEEEEec------------CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342 314 YVMDVQWSPINPALFATVEV------------AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD 377 (401)
Q Consensus 314 ~v~~v~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 377 (401)
....|.|.++|. +.++... .+.+..++..+++....+. ......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~--~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV--GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE--CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe--CCCCccccCCEECCCCCEEEEEE
Confidence 457899999997 4442211 1256666665554322221 12245689999999999887753
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.10 E-value=43 Score=30.63 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=38.9
Q ss_pred cceEEEEecCCCCCeEEEEeccCC---CCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEE
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNK---EAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGG 137 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~---~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g 137 (401)
.....|.|.++|...+ +.-..+. .........|..++..+++... +... ....++.++|+||++.++++-
T Consensus 476 nsPDnL~fd~~G~LWf-~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWI-LTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEE-EECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEE-EeCCCcCccccccccCCceEEEEeCCCCeEEE-EEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567799999985444 3311100 0000112367777776665432 3222 235789999999985555543
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=51.43 E-value=97 Score=25.15 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=106.1
Q ss_pred CCcEEEEEEeecCCceEEEEEeCCCcEEEe---eccCCCCCccccccccccccCCccceEEEEeccC-CCCeEEEEcCCc
Q psy17342 167 THPVFCMSVIGTQNAHNLISISNDGRLCSW---SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCEDG 242 (401)
Q Consensus 167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w---d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~ 242 (401)
.+.+..+.- ....+.|+.-+..|.++-- ++...... .+ +. ....|..+... . +...++..+.+|
T Consensus 23 gD~~~~~~~--~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~--~l-l~------~~e~i~~v~~~-~~~~~~~v~~T~~G 90 (276)
T 3no0_A 23 KAPVVNILR--VPFTEGLFLVSNRGRVYWIAGSQALQGSKV--SL-KS------REEKIVGAFIR-EKFGNRLLLATKKG 90 (276)
T ss_dssp CCCEEEEEE--EETTSCEEEEETTSEEEEECSHHHHTSEEC--CC-SS------TTCCEEEEEEG-GGSCSEEEEEETTS
T ss_pred CCeEEEEEE--ECCCCEEEEEcCCCeEEEEEhhhCccCccc--cc-CC------CCCEEEEEECC-cCCCCEEEEEeCCC
Confidence 345555544 3344566666778876654 33221111 11 21 34456555332 3 567899999999
Q ss_pred eEEEEeCCCCC----CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC---------CceEEEe
Q psy17342 243 NVYSACRHGNK----AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN---------KPVHSFN 309 (401)
Q Consensus 243 ~i~~~~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~~ 309 (401)
.++...+.... ......+.. .+.+..+..... ...++..+..|.+..+....- .....+.
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~------~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~ 163 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVD------ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE 163 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCS------SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC
T ss_pred EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCC------CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC
Confidence 99988765321 101112222 234444433333 456777788999888876431 1111233
Q ss_pred ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc----eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEE-
Q psy17342 310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA----TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITM- 384 (401)
Q Consensus 310 ~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~i- 384 (401)
. ...|.++...+++. .++..+..|.++...+..-..... ... ......+..+....+...++..+.+|.+..
T Consensus 164 ~-~d~vv~~~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~-i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~ 240 (276)
T 3no0_A 164 K-NDETSGLRIWNGEP-YLLVITAKGRVKKISHEEIPKTNRGVKGTEV-SGTKDTLVDLIPIKEEVELLITTKNGKAFYD 240 (276)
T ss_dssp T-TCCEEEEEEESSCS-EEEEEETTSCEEEEEGGGSCCCCTTCCCEEC-CCSSSCEEEEEEESSEEEEEEEETTSCEEEE
T ss_pred C-CCEEEEEEEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCCCcceEE-EcCCCcEEEEEEeCCCCEEEEEcCCCeEEEe
Confidence 2 34565555444454 566777899998887754322111 010 122334544444334456777788888877
Q ss_pred -EEecc
Q psy17342 385 -FDVGE 389 (401)
Q Consensus 385 -w~~~~ 389 (401)
+++.+
T Consensus 241 ~~~~~~ 246 (276)
T 3no0_A 241 KINQKD 246 (276)
T ss_dssp EEEGGG
T ss_pred eeCHHH
Confidence 77643
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=47.09 E-value=1.4e+02 Score=25.61 Aligned_cols=159 Identities=8% Similarity=0.015 Sum_probs=88.4
Q ss_pred ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-------CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342 73 WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-------KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL 145 (401)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i 145 (401)
+-|+...+++.+ .+|.|+--.+.. ++......+.....+..+...... ..|+.-+..|.+.-
T Consensus 3 lI~~e~~~v~lT----------~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~-d~ll~fT~~G~~~~ 71 (370)
T 3l6v_A 3 LIAPEDVVVTLS----------HAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTH-DTLLTFTSSGKVFW 71 (370)
T ss_dssp CCCCCCEEEEEE----------SSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTT-CEEEEEETTSEEEE
T ss_pred cccCCCEEEEEe----------CCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCC-CEEEEEeCCCeEEE
Confidence 346777888888 799999865532 122333445555667766666544 44444557888766
Q ss_pred EECCC---CCCC--cee-eccccccCCCCcEEEEEEeec-CCceEEEEEeCCCcEEEeeccCCCCCc----ccccccccc
Q psy17342 146 WDTRV---QKKT--PVH-RTPLSVMAHTHPVFCMSVIGT-QNAHNLISISNDGRLCSWSLEMLSSPQ----ETRDLQYNN 214 (401)
Q Consensus 146 w~~~~---~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~~ 214 (401)
+.... .... ... ...+.+ .....|.++..... .+..+|+.++..|.++.-.+....... ..+.+
T Consensus 72 ~~~~eip~~~r~a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L---- 146 (370)
T 3l6v_A 72 LPVHQLPEAGSNARGRPIINWIPL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL---- 146 (370)
T ss_dssp EEGGGSCBCCTTSCCEEGGGSCCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC----
T ss_pred EEHHHCcCCCcccCCcCHhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe----
Confidence 55432 2111 000 001112 23456666544211 245689999999999998876533211 11122
Q ss_pred ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250 (401)
Q Consensus 215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~ 250 (401)
. ....+-.+... .....++..+.+|.+..+...
T Consensus 147 -~-~~d~lv~v~~~-~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 147 -D-EGDALVGVALT-DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp -C-TTCCEEEEEEE-CSCCEEEEEETTSEEEEEEGG
T ss_pred -C-CCCEEEEEEEe-CCCceEEEEeCCCeEEEEEcc
Confidence 1 23344444444 345577778888887777643
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.28 E-value=24 Score=33.19 Aligned_cols=29 Identities=7% Similarity=0.397 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNE 310 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 310 (401)
..++++-+.|.++|+|++++++++.+..-
T Consensus 231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 47999999999999999999988877654
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.46 E-value=2.1e+02 Score=27.13 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=33.8
Q ss_pred cEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCC-ccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342 169 PVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSP-QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239 (401)
Q Consensus 169 ~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 239 (401)
.|..|++ +|.. ..++.+...+.|...+ ..+.. ......... ..-....|.+|+++|.+.+.++++.
T Consensus 24 ~i~~i~~--~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~-~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVF--NETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQM-DEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEE--CSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCG-GGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEE--CCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCc-ccccCCCcceEEeCCCCCCEEEEEe
Confidence 7889998 5542 4566666566554443 21111 111000000 0001246899999965666666654
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.39 E-value=2.4e+02 Score=26.80 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=57.5
Q ss_pred CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc-CCCCcEEEEEEeecC-CceEEEEEeCC-------
Q psy17342 120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM-AHTHPVFCMSVIGTQ-NAHNLISISND------- 190 (401)
Q Consensus 120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~l~s~~~d------- 190 (401)
.|..|+++|.++..++++...+.|...+-....-.++... .... -....|.+|++ .| +.+.++.+...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~-~~~~~~~~~~i~~i~~--dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDH-FQMDEYSYYGVESIAT--DPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTT-CCGGGGGGGCEEEEEE--CSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCc-cCcccccCCCcceEEe--CCCCCCEEEEEeccccccccc
Confidence 7999999998777777777666655554322211111000 0000 01246889998 54 22333333321
Q ss_pred CcEEEeeccCCCCCccccccccccccC---CccceEEEEeccCCCCeEEEEcCC
Q psy17342 191 GRLCSWSLEMLSSPQETRDLQYNNKQT---KNLAVLSLAFPQNDVNNFVVGCED 241 (401)
Q Consensus 191 g~i~~wd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d 241 (401)
+...+|.-...++.-........ ... ....+..|+++|.+...++++...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~-~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFK-MGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSC-CCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcc-cCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12445554433322221111110 000 011246788997777888888744
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.37 E-value=1.5e+02 Score=24.63 Aligned_cols=247 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc---EEEeeccCCCCC
Q psy17342 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR---LCSWSLEMLSSP 204 (401)
Q Consensus 128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---i~~wd~~~~~~~ 204 (401)
|+. .++++.+.+|.|+--.+...+........+ ...+.+..+.. ....+.++..+..|. +.++++...+..
T Consensus 3 ~~e-~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l---ke~D~l~~~~~--~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 3 ASE-DVIVTVTKDGYVKRTSLRSYAASNGQDFAM---KDTDRLLAMLE--MNTKDVLLLFTNKGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp SCC-EEEEEEETTCEEEEEEHHHHHHTTTCCCCC---CTTCCEEEEEE--EETTSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCC-cEEEEEeCCCEEEEeEHHHhhhcCcccccc---CCCCEEEEEEE--ECCCCEEEEEECCCEEEEEEHHHCcCCCCC
Q ss_pred ccccccccccccCCccceEEEEeccCC---CCeEEEEcCCceEEEEeCC-----C-CCCCceeeecCCCCceeeeecCcc
Q psy17342 205 QETRDLQYNNKQTKNLAVLSLAFPQND---VNNFVVGCEDGNVYSACRH-----G-NKAGNVECYEGHEGPVVGLSSHRA 275 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~~~~~~-----~-~~~~~~~~~~~~~~~v~~i~~~~~ 275 (401)
..-..+...........|..+... ++ +.+++..+.+|.++...+. . ........+... +.+..+.....
T Consensus 77 a~G~~i~~~i~L~~~e~Iv~~~~~-~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~ 154 (323)
T 1wp5_A 77 DLGQHIANIIPIDRDEEIIKAIPI-NDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDG 154 (323)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEE-SCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECS
T ss_pred CCCcChhhccCCCCCCEEEEEEEe-cccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCC
Q ss_pred CCCCCCCcEEEEEeCCCeEEEEEeeC---------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC--
Q psy17342 276 QGHIDFSHLYLTSSYDWSVKLWNIKE---------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL-- 344 (401)
Q Consensus 276 ~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~-- 344 (401)
...++..+.+|.+..++... |.....+.. ...|.++..-+++...++..+..|..+..++..
T Consensus 155 ------~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~ 227 (323)
T 1wp5_A 155 ------MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFE 227 (323)
T ss_dssp ------CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred ------CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHcc
Q ss_pred -----CCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 345 -----DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 345 -----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
++-+..+.........+..+....++..++..+..|.+...++..
T Consensus 228 ~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 228 KATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.83 E-value=3e+02 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCeEEEEEeeCCCceEEEe
Q psy17342 282 SHLYLTSSYDWSVKLWNIKENKPVHSFN 309 (401)
Q Consensus 282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 309 (401)
..++++-+.|+++|||++.+++++.+..
T Consensus 249 ~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 249 YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 5788999999999999999998887754
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.43 E-value=2.6e+02 Score=26.89 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=74.5
Q ss_pred cceEEEEecCCCCC-eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe------cCCCeeEEEEeCCCCceEEEEe
Q psy17342 66 RNVTYMDWSTQHPE-LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF------CQSPVLSCCFAKFNPYLILGGT 138 (401)
Q Consensus 66 ~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~ 138 (401)
..|.+|+++|..+. +.+++ ..+.|...+-. ++.-...... ....+.+|++.|.++..++.+.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~----------~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYART----------DIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEE----------SSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEe----------cCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 57999999997544 44444 45655444322 2211111100 1246999999986555555543
Q ss_pred cCCe----EEEEECCCCCCCce-eeccccccC---CCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342 139 YSGQ----IVLWDTRVQKKTPV-HRTPLSVMA---HTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRD 209 (401)
Q Consensus 139 ~dg~----v~iw~~~~~~~~~~-~~~~~~~~~---~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 209 (401)
.+.. -.||.-..+-..-. ...+..... ....+..+++ .|. ...++.+...+. +|.....++.-....
T Consensus 84 g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav--~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~ 159 (789)
T 1sqj_A 84 GRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAV--NPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVT 159 (789)
T ss_dssp CSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEE--ETTEEEEEEEECSSSC--EEEESSTTSSCEEET
T ss_pred CccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEE--cCCCCCEEEEEeccCC--EEEECCCCcccCCCc
Confidence 2211 33443332221111 011111100 1113455666 443 445555553443 333322221111111
Q ss_pred -cccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEE
Q psy17342 210 -LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYS 246 (401)
Q Consensus 210 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~ 246 (401)
... .......+..+.++|.+...++++..+ +.|+.
T Consensus 160 ~~~~--~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 160 SIPD--AFTNGIGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp TSCC--CCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred cCcc--ccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 100 001124678899986667777777665 45543
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.19 E-value=35 Score=32.22 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342 359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391 (401)
Q Consensus 359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~ 391 (401)
..|.++.+ +..+|++-+.|.++|+|++.++.
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCc
Confidence 34555554 47899999999999999999984
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=37.54 E-value=1.6e+02 Score=26.45 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=41.6
Q ss_pred ceEEEEECCC----C-CcEEEEEecCCEEEEEeCC-CCC-----CCcceEEee-cCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342 314 YVMDVQWSPI----N-PALFATVEVAGRVDLWNLN-LDT-----EVPATSAIV-EGAPALSRVTWTPNGTQLCVGDEKGA 381 (401)
Q Consensus 314 ~v~~v~~~~~----~-~~~l~~~~~d~~i~iwd~~-~~~-----~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~ 381 (401)
..++|+...- + ..++..|+.+|.|.-.-+. ... ......... ....+|..+.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566655432 3 2467778888877544332 211 111111111 23578899999999999999998875
Q ss_pred EEE
Q psy17342 382 ITM 384 (401)
Q Consensus 382 v~i 384 (401)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 382
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=36.11 E-value=89 Score=29.33 Aligned_cols=71 Identities=6% Similarity=0.069 Sum_probs=42.3
Q ss_pred ceEEEEEC----CCC--CcEEEEEecCCEEEEE-eCCCCCCCcceEEeecCCCCeEEEEecCCC--cEEEEEecCCcEEE
Q psy17342 314 YVMDVQWS----PIN--PALFATVEVAGRVDLW-NLNLDTEVPATSAIVEGAPALSRVTWTPNG--TQLCVGDEKGAITM 384 (401)
Q Consensus 314 ~v~~v~~~----~~~--~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v~i 384 (401)
..++|+.. .++ ..++..|+.+|.|.-. .......+..-........+|..+.++++. .+|++++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 35666652 333 2467788889987543 333221111111123345788899999988 99999988874443
No 383
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=34.59 E-value=2.2e+02 Score=24.35 Aligned_cols=122 Identities=7% Similarity=0.049 Sum_probs=68.4
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC---C------CCCc-eEEEecCCCeeEEEEeCC--CCce
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF---K------KTTP-EFEFFCQSPVLSCCFAKF--NPYL 133 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---~------~~~~-~~~~~~~~~v~~~~~~~~--~~~~ 133 (401)
+.+..+........|+..+ ..|.++-+.... . .... .+.+.....|.++...++ ...+
T Consensus 46 D~l~~~~~~~t~d~ll~fT----------~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ 115 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFT----------SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRY 115 (370)
T ss_dssp CCEEEEEEECTTCEEEEEE----------TTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCE
T ss_pred CEEEEEEEecCCCEEEEEe----------CCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcE
Confidence 4566666666666677777 578776665432 1 1000 111233456766654431 2347
Q ss_pred EEEEecCCeEEEEECCCCCCCc-eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342 134 ILGGTYSGQIVLWDTRVQKKTP-VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM 200 (401)
Q Consensus 134 l~~g~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 200 (401)
|+..+..|.++.-.+..-.... .-...+.+.. .+.+..+.. ......++..+.+|.+..+....
T Consensus 116 ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~--~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 116 VFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL--TDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE--ECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE--eCCCceEEEEeCCCeEEEEEccc
Confidence 7778899999998876533211 0011123333 445555554 34455778888899888887653
No 384
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.82 E-value=1.6e+02 Score=26.76 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=43.4
Q ss_pred CeeEEEEeCCC-CceEEEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEE-EEEEeecCCceEEEEEeCCCcEEE
Q psy17342 120 PVLSCCFAKFN-PYLILGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVF-CMSVIGTQNAHNLISISNDGRLCS 195 (401)
Q Consensus 120 ~v~~~~~~~~~-~~~l~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~ 195 (401)
..++|+....+ -..++.|+.+|.|.-..+...... .... .+.+.....+|. .|.+ +++..+|+.++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e-~~~v~~~~~pv~~~l~~--~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYE-MVSVFKDGSPILRDMAF--SINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEE-EEECCTTCCCCCSCCEE--CTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEE-EEEeecCCCccccceEE--ccCCCeEEEEecccccee
Confidence 45666655433 236778889998766555433211 1111 122333456775 8888 788888998888765554
No 385
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=29.72 E-value=1.7e+02 Score=26.46 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=43.6
Q ss_pred ceEEEEECC-CCCcEEEEEecCCEEEEEeCC-CCCCCcceEEeecCCCCe-EEEEecCCCcEEEEEecCCcEEE
Q psy17342 314 YVMDVQWSP-INPALFATVEVAGRVDLWNLN-LDTEVPATSAIVEGAPAL-SRVTWTPNGTQLCVGDEKGAITM 384 (401)
Q Consensus 314 ~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~v~i 384 (401)
..++|+... ++..++..|+.+|.|.-.-+. .......-........+| ..+.++++..+|++++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 356665543 344577778889988755443 222111112223445667 48999999999999988875544
No 386
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.46 E-value=2.8e+02 Score=22.82 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=91.2
Q ss_pred cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC----------ceEEEecCCCeeEEEEeCC--CCce
Q psy17342 66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----------PEFEFFCQSPVLSCCFAKF--NPYL 133 (401)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~v~~~~~~~~--~~~~ 133 (401)
+.+..+........++..+ ..|.++-.....-... ..+.+.....|.++...++ ....
T Consensus 47 D~l~~~~~~~~~~~ll~~T----------~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ 116 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMIS----------NEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 116 (312)
T ss_dssp CCEEEEEEEETTCEEEEEE----------TTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCE
T ss_pred CEEEEEEEECCCCEEEEEE----------CCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCE
Confidence 4455555555556777777 6888777665421111 0112233455666644431 2245
Q ss_pred EEEEecCCeEEEEECCCCCCCc-eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC---CCccccc
Q psy17342 134 ILGGTYSGQIVLWDTRVQKKTP-VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS---SPQETRD 209 (401)
Q Consensus 134 l~~g~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~ 209 (401)
++..+..|.++.-.+..-.... .-...+.+.. .+.+..+.. ......++..+.+|.+..+...... ....-..
T Consensus 117 ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~ 193 (312)
T 1suu_A 117 LLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC 193 (312)
T ss_dssp EEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE
T ss_pred EEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE
Confidence 6666789999998876533211 0011123333 556666665 3445678888999999988875421 1111111
Q ss_pred cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342 210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH 250 (401)
Q Consensus 210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~ 250 (401)
... +. ....|..+... .++..+++.+..|......+.
T Consensus 194 ~i~--L~-~~d~vv~~~~v-~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 194 GMK--LK-EGDLFVKVLSV-KENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CCC--CC-TTCCEEEEEEC-TTCSEEEEEETTSEEEEEEGG
T ss_pred eEE--eC-CCCEEEEEEEE-CCCCeEEEEECCCceEEEEHH
Confidence 111 11 23445555544 345667888888988887764
No 387
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=25.28 E-value=4e+02 Score=24.40 Aligned_cols=82 Identities=9% Similarity=-0.037 Sum_probs=45.3
Q ss_pred CceEEEeecCCceEEEEECC----CC-CcEEEEEecCCEEE-EEeCCCCC----CCcceEE-ee-c---------CCCCe
Q psy17342 303 KPVHSFNEFRDYVMDVQWSP----IN-PALFATVEVAGRVD-LWNLNLDT----EVPATSA-IV-E---------GAPAL 361 (401)
Q Consensus 303 ~~~~~~~~~~~~v~~v~~~~----~~-~~~l~~~~~d~~i~-iwd~~~~~----~~~~~~~-~~-~---------~~~~v 361 (401)
+++..-.......+.|+... ++ ..++..|+.+|.|. +....... ....+.. .. . ...+|
T Consensus 393 ~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI 472 (565)
T 3oky_B 393 RPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRI 472 (565)
T ss_dssp SCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCC
T ss_pred eeEEEEcCCccceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCce
Confidence 34443333222456666654 22 34677788899875 43322111 0111111 11 1 14578
Q ss_pred EEEEecCCCcEEEEEecCCcEEE
Q psy17342 362 SRVTWTPNGTQLCVGDEKGAITM 384 (401)
Q Consensus 362 ~~~~~s~~g~~l~~~~~dg~v~i 384 (401)
..+.++++...|++++.++.++|
T Consensus 473 ~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 473 MGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CEEEEEGGGTEEEEECSSCEEEE
T ss_pred EEEEEcCCCCEEEEEecCeEEEe
Confidence 89999999999999998875554
No 388
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.07 E-value=3.3e+02 Score=23.38 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=89.1
Q ss_pred eEEEEECCCC--CCCceeeccccccCCCCcEEEEEEe-ecCC----ceEE-EEEeCCCcEEEeeccCCCCCcccccc-cc
Q psy17342 142 QIVLWDTRVQ--KKTPVHRTPLSVMAHTHPVFCMSVI-GTQN----AHNL-ISISNDGRLCSWSLEMLSSPQETRDL-QY 212 (401)
Q Consensus 142 ~v~iw~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~-~~ 212 (401)
.|.+||+.+. +.......+............+.+. ..+. +.+. ++=+....|.++|+.+...-...... ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888887 6554444332223344567888873 1121 2333 33344677999998753211111000 00
Q ss_pred c-----cccCC----ccceEEEEeccCC----CCeEEEEcCCc-eEEEEe---CCCCCCCceeeecCCCC---ceeeeec
Q psy17342 213 N-----NKQTK----NLAVLSLAFPQND----VNNFVVGCEDG-NVYSAC---RHGNKAGNVECYEGHEG---PVVGLSS 272 (401)
Q Consensus 213 ~-----~~~~~----~~~v~~~~~~~~~----~~~l~~~~~d~-~i~~~~---~~~~~~~~~~~~~~~~~---~v~~i~~ 272 (401)
. ...+. ...+..|+++ ++ ++.|......+ .++-.. ++...........+..+ .-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLs-p~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLG-DRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEEC-CCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEec-CCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 00011 2478888888 44 55666554443 344332 22111111111122222 2223455
Q ss_pred CccCCCCCCCcEEEEEeCCCeEEEEEeeC-C---CceEEEee--cCCceEEEEECCCCCcEEEEE
Q psy17342 273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKE-N---KPVHSFNE--FRDYVMDVQWSPINPALFATV 331 (401)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~ 331 (401)
.+.. +.++++--....|..|+..+ . +....+.. .-..+..+.+.++|. +.+..
T Consensus 283 D~~~-----G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~s 341 (381)
T 3q6k_A 283 DPKT-----KVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMS 341 (381)
T ss_dssp CTTT-----CEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEE
T ss_pred eCCC-----CeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEE
Confidence 4332 67788877888999999764 1 12222222 112456777777764 44433
No 389
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.47 E-value=1.8e+02 Score=26.72 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=36.6
Q ss_pred cEEEEEecCCEEEEEeCCCCC-C--CcceE-Ee-ecCCCCeEEEEecCCCcEEEEEecCCcEEE
Q psy17342 326 ALFATVEVAGRVDLWNLNLDT-E--VPATS-AI-VEGAPALSRVTWTPNGTQLCVGDEKGAITM 384 (401)
Q Consensus 326 ~~l~~~~~d~~i~iwd~~~~~-~--~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~i 384 (401)
.++..|+.+|.|.-.-+.... . ...+. .. .....+|..+.++++...|++++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467778888887644333211 1 11111 11 134567899999999999999988874443
No 390
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.81 E-value=2e+02 Score=26.20 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=43.4
Q ss_pred cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE-EEEeccCCCCeEEEEcCCceEEE
Q psy17342 169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL-SLAFPQNDVNNFVVGCEDGNVYS 246 (401)
Q Consensus 169 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~~ 246 (401)
..++|+.....+-..++.|+.+|.|.-..+..........+... ......+|. .|.++ ++...|++++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~--v~~~~~pv~~~l~~~-~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVS--VFKDGSPILRDMAFS-INQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEE--CCTTCCCCCSCCEEC-TTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEE--eecCCCccccceEEc-cCCCeEEEEecccccee
Confidence 35555553344556788889999877655542111101111000 112345674 78888 68888999988877766
No 391
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.62 E-value=2.3e+02 Score=26.53 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=35.3
Q ss_pred cEEEEEecCCEEE-EEeCCCCCCC--c--ceE--EeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342 326 ALFATVEVAGRVD-LWNLNLDTEV--P--ATS--AIVEGAPALSRVTWTPNGTQLCVGDEKGAIT 383 (401)
Q Consensus 326 ~~l~~~~~d~~i~-iwd~~~~~~~--~--~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~ 383 (401)
.++..|+.+|.|. +.-....... . .+. .......+|..+.++++..+|++++.++.++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~k 494 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQ 494 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEE
Confidence 3667788888875 3322221110 0 111 1123467899999999999999999887443
No 392
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=21.59 E-value=3.8e+02 Score=22.81 Aligned_cols=251 Identities=12% Similarity=0.100 Sum_probs=118.3
Q ss_pred CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc-----eeecccccc-CCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342 120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP-----VHRTPLSVM-AHTHPVFCMSVIGTQNAHNLISISNDGRL 193 (401)
Q Consensus 120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 193 (401)
.+..++- +....+.-..+|.|..|-....-... ....+..+. .....+..++. .....+.+....||.|
T Consensus 54 ~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i--~~G~~h~~al~~~G~v 128 (389)
T 3kci_A 54 RPVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAV--NSGGKHCLALSSEGEV 128 (389)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEE--CTTCSEEEEEETTSCE
T ss_pred ceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEE--CcCCCeEEEEcCCCCE
Confidence 4555554 33444444679999999765421110 000111111 12223444555 4556677777889999
Q ss_pred EEeeccCCCCCcc---c-cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC------CCce---eee
Q psy17342 194 CSWSLEMLSSPQE---T-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK------AGNV---ECY 260 (401)
Q Consensus 194 ~~wd~~~~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------~~~~---~~~ 260 (401)
..|-....++.-. . ...+..........|..++.. ....++-..+|.|+.|=....- .... ...
T Consensus 129 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v 205 (389)
T 3kci_A 129 YSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 205 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred EEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEe
Confidence 9996543221100 0 000000000112246666543 4555566778999999543210 0000 000
Q ss_pred c-CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CC-------ceE---EEee-cCCceEEEEECCCCCcE
Q psy17342 261 E-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NK-------PVH---SFNE-FRDYVMDVQWSPINPAL 327 (401)
Q Consensus 261 ~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-------~~~---~~~~-~~~~v~~v~~~~~~~~~ 327 (401)
. .....|..++.... ....+.-..|+.|..|-... ++ ... .+.. ....|..|+.... .
T Consensus 206 ~~~~~~~v~~ia~G~g------~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---h 276 (389)
T 3kci_A 206 EALQGHRVVDIACGSG------DAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---F 276 (389)
T ss_dssp GGGTTSCEEEEEECCS------SCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---E
T ss_pred cccCCCeEEEEEEcCC------CcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---E
Confidence 0 11234555554321 13455556789999996432 11 001 1111 1224666665443 2
Q ss_pred EEEEecCCEEEEEeCCCCCCCc------c-eEEeec--CCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342 328 FATVEVAGRVDLWNLNLDTEVP------A-TSAIVE--GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389 (401)
Q Consensus 328 l~~~~~d~~i~iwd~~~~~~~~------~-~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~ 389 (401)
.+.-..||.|+.|=.....++. . ...... ....|..++. -....++-..||.|+.|=...
T Consensus 277 s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 277 SVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 3444678999999654322110 0 011111 1234555544 333445557788899997654
No 393
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.93 E-value=2.1e+02 Score=25.60 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=42.3
Q ss_pred CeeEEEEeCC----C-CceEEEEecCCeEEEEECCCCCC----CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC
Q psy17342 120 PVLSCCFAKF----N-PYLILGGTYSGQIVLWDTRVQKK----TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND 190 (401)
Q Consensus 120 ~v~~~~~~~~----~-~~~l~~g~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 190 (401)
..++|+...- + -..++.|+.+|.|.=.-+..... ....-..+.......+|..|.+ +++..+|..++.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l--~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMEL--STKQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEE--ETTTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEE--cCCCCEEEEEECC
Confidence 4566666532 2 13677888999875443322111 0000001222334678999998 7888899999888
Q ss_pred CcEEE
Q psy17342 191 GRLCS 195 (401)
Q Consensus 191 g~i~~ 195 (401)
+.+++
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76554
Done!