RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17342
(401 letters)
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 85.3 bits (210), Expect = 2e-18
Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 37/222 (16%)
Query: 198 LEMLSSPQETRDLQYNNKQTKNLAVLS--LAFPQNDVNNFVVGCEDGNVYSACRHGNKAG 255
++ + +E +D Q+ + K + + P+ + V + G V++ G +
Sbjct: 5 MDAMIPEREMKDFQF--RALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIF 62
Query: 256 NVE-------CYEGHEGPVVGLSSHRAQGHIDFSHL------------YLTSSYDWSVKL 296
+ + V + HL ++S Y +
Sbjct: 63 PTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAF 122
Query: 297 WNIKE-----NKPVHSF------NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
++++ + F + V+D++W+P P++ A G + + +
Sbjct: 123 FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182
Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+V AT + V W+P G QL VG + G + +
Sbjct: 183 VKVCATLPSTVAV---TSVCWSPKGKQLAVGKQNGTVVQYLP 221
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 80.9 bits (200), Expect = 6e-17
Identities = 52/254 (20%), Positives = 94/254 (37%), Gaps = 15/254 (5%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP----VHRTPLSVMAHTHPVFCM 173
+ V + N +I T S ++++D P + L + H + +
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233
S L+S S+D +C W + D + V +A+ +
Sbjct: 188 S-WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHES 245
Query: 234 NFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291
F +D + + R+ N + + H V LS + + T S D
Sbjct: 246 LFGSVADDQKLMIWDT-RNNNTSKPSHTVDAHTAEVNCLSFNP-----YSEFILATGSAD 299
Query: 292 WSVKLWNI-KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
+V LW++ +HSF +D + VQWSP N + A+ R+ +W+L+ E +
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 351 TSAIVEGAPALSRV 364
T +G P L +
Sbjct: 360 TEDAEDGPPELLFI 373
Score = 64.4 bits (157), Expect = 2e-11
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 31/188 (16%)
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVY--------SACRHGNKAGNVECYEGHEGPVVGLS- 271
V + + +V S + GH+ GLS
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 189
Query: 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNI-------KENKPVHSFNEFRDYVMDVQWSPIN 324
+ G++ L++S D ++ LW+I + + F V DV W ++
Sbjct: 190 NPNLNGYL------LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 325 PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR----VTWTPNGTQLCV-GDEK 379
+LF +V ++ +W DT TS A + +++ P + G
Sbjct: 244 ESLFGSVADDQKLMIW----DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 380 GAITMFDV 387
+ ++D+
Sbjct: 300 KTVALWDL 307
Score = 61.3 bits (149), Expect = 2e-10
Identities = 45/334 (13%), Positives = 97/334 (29%), Gaps = 49/334 (14%)
Query: 36 DLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEP 95
+D E + + K + V + Q+ ++ P
Sbjct: 99 GSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKT---------P 149
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQ---------SPVLSCCFAKFNPYLILGGTYSGQIVLW 146
L+++ + PE CQ + +L + I LW
Sbjct: 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209
Query: 147 D-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ 205
D K+ V HT V ++ + S+++D +L W ++ +
Sbjct: 210 DINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHESLFGSVADDQKLMIWDTRNNNTSK 268
Query: 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGH 263
+ + + V L+F G D V + R+ + +E H
Sbjct: 269 PSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLK--LHSFESH 320
Query: 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF------------ 311
+ + + Q + +S D + +W++ + S +
Sbjct: 321 KDEIFQV-----QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 312 --RDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
+ D W+P P + +V + +W +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 57.8 bits (140), Expect = 2e-09
Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%)
Query: 65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-----FKKTTPEFEFFC-Q 118
+ + W+ LL++ D +W+ + + F
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASD---------DHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
+ V + + L ++++WDTR + T V AHT V C+S
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT---VDAHTAEVNCLS-FNP 287
Query: 179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG 238
+ L + S D + W L L + + + + + + ++
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHS--FESHKD-----EIFQVQWSPHNETILASS 340
Query: 239 CEDGNV----YSACRHGNKAGNVECY--------EGHEGPVVGLSSHRAQGHIDFSHLYL 286
D + S + E GH + S + + +
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-----NEPWIIC 395
Query: 287 TSSYDWSVKLWNIKEN 302
+ S D +++W + EN
Sbjct: 396 SVSEDNIMQVWQMAEN 411
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 77.8 bits (192), Expect = 6e-16
Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 28/268 (10%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDT---RVQKKTPVHRTPLSVMAHTHPVFCMS 174
S V + F ++ G +G+I +WD TP M+ V ++
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172
Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK-NLAVLSLAF-PQNDV 232
AH S + W L+ + +E L Y + + + + + P
Sbjct: 173 -WNQSLAHVFASAGSSNFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSVVEWHP--KN 226
Query: 233 NNFVVGCEDGNVYSACR----HGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HL 284
+ V + + +GH+ ++ L + HL
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD---------WCHQDEHL 277
Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344
L+S D +V LWN + + + F ++ +++P P LFA ++++ L
Sbjct: 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
Query: 345 DTEVPATSAIVEGAPALSRVTWTPNGTQ 372
T W +
Sbjct: 338 LTNTLDEQETETKQQESETDFWNNVSRE 365
Score = 58.9 bits (143), Expect = 1e-09
Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 36/243 (14%)
Query: 118 QSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
L + + + LW P++ + +
Sbjct: 23 DKIPLL---VSGTVSGTVDANFSTDSSLELWSL----LAADSEKPIASLQVDSKFN--DL 73
Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
+ N + ++G L +S + + + + +V ++ F N
Sbjct: 74 DWSHNNKIIAGALDNGSLELYSTN--EANNAINSMARFSNHSS--SVKTVKFNAKQDNVL 129
Query: 236 VVGCEDGNVY-------SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS 288
G +G ++ + V+ L+ +++ H+ S +
Sbjct: 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----A 184
Query: 289 SYDWSVKLWNIKENKPVHSFNEF------RDYVMDVQWSPINPALFATVEVAGR---VDL 339
+W++K K V + + + V+W P N AT + + +
Sbjct: 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 340 WNL 342
W+L
Sbjct: 245 WDL 247
Score = 47.3 bits (113), Expect = 5e-06
Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 33/289 (11%)
Query: 101 IWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWD--TRVQKKTPVH 157
+W+ + S ++ N + G +G + L+ +
Sbjct: 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIA-GALDNGSLELYSTNEANNAINSMA 107
Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217
R H+ V + Q+ + L S N+G + W + + +
Sbjct: 108 RFS----NHSSSVKTVKFNAKQD-NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162
Query: 218 KNLA-VLSLAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSS 272
++ V+SLA+ Q+ + F A + G + + +
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222
Query: 273 HRAQGHIDFSHLYLTSS---YDWSVKLWNIKE-NKPVHSFNE-FRDYVMDVQWSPINPAL 327
H S T++ D S+ +W+++ N P+ + N+ + ++ + W + L
Sbjct: 223 HP-----KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277
Query: 328 FATVEVAGRVDLWNLN---LDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
+ V LWN ++ PA + P L
Sbjct: 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK------TKFAPEAPDL 320
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 289 SYDWSVKLWNIKENKPV---HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
+ VKL H + V + + + A ++LW+L
Sbjct: 2 AMGSMVKLAEFSRTATFAWSHD-----KIPLLVSGTV-SGTVDANFSTDSSLELWSLLAA 55
Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV--GEVGIACLK 396
+ A ++ + + W+ N + + G++ ++ I +
Sbjct: 56 -DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA 107
Score = 31.2 bits (71), Expect = 0.62
Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK 153
D LIW+ + T P Q +LS + + +L+L ++LW+ +
Sbjct: 239 DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN--PESA 295
Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL 210
+ + P A + F + S D ++ +L+ L++ + ++
Sbjct: 296 EQLSQFP----ARGNWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 72.4 bits (178), Expect = 3e-14
Identities = 46/270 (17%), Positives = 80/270 (29%), Gaps = 34/270 (12%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
V S + +P + G+ G I+LWD VQ KT + M + M
Sbjct: 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----GMGPGDAITGMK-FN 127
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
N + L S G S Q + +
Sbjct: 128 QFNTNQLFVSSIRGATTLRDFS-GSVIQVFAKTDSWDY-----WYCCVDVS-VSRQMLAT 180
Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HLYLTSSYDWS 293
G G + G + + H+ V H +F+ L TSS D +
Sbjct: 181 GDSTGRLL---LLGLDGHEIFKEKLHKAKV---------THAEFNPRCDWLMATSSVDAT 228
Query: 294 VKLWNIKENKPVHSFNEF---RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
VKLW+++ K +S+ V ++P + T + + +++ ++
Sbjct: 229 VKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288
Query: 351 T---SAIVEGAPALSRVTWTPNGTQLCVGD 377
+ TW P + G
Sbjct: 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318
Score = 41.2 bits (97), Expect = 4e-04
Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS--- 174
++ V F +L+ + + LWD R K + ++ M H PV
Sbjct: 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN---SYIAEMPHEKPVNAAYFNP 260
Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVN 233
T+ L++ + +S S P + + + ++Q ++L + + P D+
Sbjct: 261 TDSTK----LLTTDQRNEIRVYSSYDWSKPDQI--IIHPHRQFQHLTPIKATWHPMYDLI 314
Query: 234 NFVVGCEDGNVYSACRHGNKAGNVECYEGHEG-PVVGLSSHRAQGHI---DFSH--LYLT 287
D + N ++ Y+ + G V L A G I FS L
Sbjct: 315 -VAGRYPDDQLL-----LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 368
Query: 288 SSYDWSVKLWNIKE 301
S +++ +WN ++
Sbjct: 369 SGMGFNILIWNRED 382
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
+ ++K K + + F V ++W P +P A G + LW+ +
Sbjct: 48 LRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD 104
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 67.6 bits (164), Expect = 3e-12
Identities = 31/274 (11%), Positives = 81/274 (29%), Gaps = 66/274 (24%)
Query: 125 CFAKFNPY--LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH 182
A F+ L+ T +G++ ++ + + + M +
Sbjct: 22 AAA-FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-------DRSAIKEMRFV---KGI 70
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG 242
L+ I+ + SL ++ + + S+ ++ ++G ++G
Sbjct: 71 YLVVINAKDTVYVLSL-------YSQKVLTTVFVPGK--ITSIDTDA-SLDWMLIGLQNG 120
Query: 243 NVY---------SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS 293
++ S+ + N + P+V + + + SY++
Sbjct: 121 SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT------VLISYEYV 174
Query: 294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA 353
+++ EN+ SF E+ + + T T
Sbjct: 175 TLTYSLVENEIKQSF---------------------IYELPPFAPGGDFSEKTNEKRT-- 211
Query: 354 IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
P + + + PN + E ++ +D
Sbjct: 212 -----PKVIQSLYHPNSLHIITIHEDNSLVFWDA 240
Score = 37.5 bits (86), Expect = 0.007
Identities = 46/410 (11%), Positives = 104/410 (25%), Gaps = 74/410 (18%)
Query: 39 FDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGV 98
+D+ D+ SS KL ++ ++ + + W+ + +L SY + V
Sbjct: 125 YDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY----------EYV 174
Query: 99 CLIWNTKFKKTTPEFEFFC-----------------QSPVLSCCFAKFNPYLILGGTYSG 141
L ++ + F + V+ + N I+
Sbjct: 175 TLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDN 233
Query: 142 QIVLWDTRVQKK------------TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN 189
+V WD P + + + + N + +
Sbjct: 234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293
Query: 190 DGRLC------------SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
+ ++ + E Y N + + L + N +
Sbjct: 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP---TNVPIVNILP 350
Query: 238 GCEDGNVYSACRHGN------KAGNVECYEGHEG-PVVGLSSHRAQGHIDFSHLYLTSSY 290
++ C + G +E G S + +
Sbjct: 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAA 410
Query: 291 DWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE 347
KLW + + + + F T G V +++ +
Sbjct: 411 SVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSNGSVRIYDASHGDI 469
Query: 348 VPATSAIVEGAPALSR--------VTWTPNGTQLCVGDEKGAITMFDVGE 389
S V + L++ +++ +L V E G + +F
Sbjct: 470 QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519
Score = 37.2 bits (85), Expect = 0.009
Identities = 28/297 (9%), Positives = 84/297 (28%), Gaps = 40/297 (13%)
Query: 100 LIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT 159
+ W + +S + + LG T I ++ +
Sbjct: 277 VYWMCE--NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334
Query: 160 PLSVMAHTHPVFCMSVIGTQNAHN--------LISISNDGRLCSWSLEMLSSPQETRDLQ 211
+ + P+ + I Q+ + ++ I +G + + +
Sbjct: 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA---- 390
Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS 271
+L +L++ + + ++ + + +G
Sbjct: 391 -------SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKD-YLLKGGVRTKRQKL 442
Query: 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIK----------ENKPVHSFNEFRDY-VMDVQW 320
++ ++T + SV++++ E + N+ ++ V + +
Sbjct: 443 PA------EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496
Query: 321 SPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD 377
+ A G V L+ ++ + G ++ ++ N T + D
Sbjct: 497 AAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552
Score = 27.5 bits (60), Expect = 9.3
Identities = 4/58 (6%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
+ + + + +G ++L D R ++ + ++ +
Sbjct: 575 KGKTSAINNSNIG--FVGIAYAAGSLMLIDRR--GPAIIYMENIREISGAQSACVTCI 628
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 64.5 bits (157), Expect = 3e-11
Identities = 56/306 (18%), Positives = 94/306 (30%), Gaps = 46/306 (15%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA-KFNPYLILGGTYSGQIVLWDTRVQKKT 154
D IW++ K ++ V C F K N L+ G+ + LWD
Sbjct: 678 DKKVKIWDSATGKLVHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL----NQ 732
Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
R + HT+ V + + L S S DG L W + S E + +
Sbjct: 733 KECRNTMF--GHTNSVNHCRF--SPDDELLASCSADGTLRLWDVR---SANERKSINVKR 785
Query: 215 KQTKNL--------AVLSLAF-PQNDVNNFVVGCEDGNVYSACRHGNKAGN--VECYEGH 263
+ V ++ D + +V ++ E + GH
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAAKNK----VLLFDIHTSGLLAEIHTGH 839
Query: 264 EGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
+ S + + + V+LWNI V +V V +S
Sbjct: 840 HSTIQYCDFSP-------YDHLA-VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381
P + + F T + +W +V SAIV V + N T + D
Sbjct: 892 P-DGSSFLTASDDQTIRVWETK---KVCKNSAIVLKQE--IDVVFQENETMVLAVDNIRG 945
Query: 382 ITMFDV 387
+ +
Sbjct: 946 LQLIAG 951
Score = 62.2 bits (151), Expect = 2e-10
Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 50/298 (16%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
D +W TK + + F + ++ + L +
Sbjct: 903 DQTIRVWETK---KVCKNSAIVLKQEIDVVFQENETMVLAVD-NIRGLQLIAGK------ 952
Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
T V C + + + + DG + L + + + K
Sbjct: 953 ---TGQIDYLPEAQVSCCCL--SPHLEYVAFGDEDGAIKIIELP---NNRVFSSGVGHKK 1004
Query: 216 QTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSS 272
AV + F D + ED + + + G+ + H+ V
Sbjct: 1005 -----AVRHIQFTA--DGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFR- 1051
Query: 273 HRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT 330
L+ S+D +VK+WN+ + F + V+ S + F++
Sbjct: 1052 --------LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSS 1102
Query: 331 VEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+W+ +L + + ++G + ++ +G L GD+ G I +++V
Sbjct: 1103 TSADKTAKIWSFDLLSPL----HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 53.3 bits (128), Expect = 1e-07
Identities = 44/261 (16%), Positives = 78/261 (29%), Gaps = 51/261 (19%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFA---KFNPYLILGGTYSGQIVLWDTRVQ 151
D V +WN + T Q V + +L ++ G + +W+
Sbjct: 1024 DSVIQVWNWQ---TGDYVFLQAHQETVKDFRLLQDSR-----LLSWSFDGTVKVWNV--- 1072
Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
T + H V ++ + +A S S D WS + +L+
Sbjct: 1073 -ITGRIERDFT--CHQGTVLSCAI--SSDATKFSSTSADKTAKIWSFD---LLSPLHELK 1124
Query: 212 YNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV-------YSACRHGNKAGNVECYEGH 263
+N V AF D G ++G + E H
Sbjct: 1125 GHNG-----CVRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 264 EGPVVGLSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
G V + FS L S+ +K WN+ +F + + S
Sbjct: 1178 GGWVTDVC---------FSPDSKTLVSA-GGYLKWWNVATGDSSQTFYTNGTNLKKIHVS 1227
Query: 322 PINPALFATVEVAGRVDLWNL 342
P + + TV+ G + + +
Sbjct: 1228 P-DFRTYVTVDNLGILYILQV 1247
Score = 47.1 bits (112), Expect = 9e-06
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+ HE V+ + FS T S D VK+W+ K VH+++E + V
Sbjct: 654 KAHEDEVLCCA---------FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Query: 318 VQWSP-INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCV 375
++ N L AT + LW+LN + G +++ ++P+ L
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDELLAS 760
Query: 376 GDEKGAITMFDV 387
G + ++DV
Sbjct: 761 CSADGTLRLWDV 772
Score = 45.6 bits (108), Expect = 3e-05
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
H V FS + D +++++ + + + D V+
Sbjct: 612 RPHTDAVYHAC---------FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 662
Query: 318 VQWSPINPALFATVEVAGRVDLWNLN 343
+S + + AT +V +W+
Sbjct: 663 CAFSS-DDSYIATCSADKKVKIWDSA 687
Score = 30.2 bits (68), Expect = 1.4
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 19/112 (16%)
Query: 96 DGVCLIWNT---KFKKTTPEFEFFC-----QSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
+G IWN + + V CF+ + L+ G + W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---GGYLKWWN 1204
Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE 199
T + + + V + + +++ N G L +
Sbjct: 1205 V----ATGDSSQTFY--TNGTNLKKIHV--SPDFRTYVTVDNLGILYILQVL 1248
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 61.4 bits (148), Expect = 2e-10
Identities = 35/355 (9%), Positives = 81/355 (22%), Gaps = 49/355 (13%)
Query: 24 EEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR--------NVTYMDWST 75
E + + + L+ + G+ + +F K R VT + W
Sbjct: 85 TEFENMIKLRTKRLKLLI-GEVDAEVSTGDKIEFPVLANGKRRGFIYNVGGLVTDIAWLN 143
Query: 76 QHPEL--------LLASYHRNKEAPNEP----------DGVCLIWNTKFKKTTPEFEFFC 117
L + + + P I+
Sbjct: 144 IEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI 203
Query: 118 QSPVLSCCFAKFNPY--------LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT-- 167
K++ + + G I + + T
Sbjct: 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263
Query: 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF 227
++ + ++ +G + + L P Y+ + +S A+
Sbjct: 264 LADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----FYDQVHDSYILSVSTAY 318
Query: 228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT 287
+ DG Y +V + + Y+
Sbjct: 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC------PQIYSYIY 372
Query: 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
S S++ + VH + + S ++P + G + + N
Sbjct: 373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNA 426
Score = 59.5 bits (143), Expect = 8e-10
Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 9/222 (4%)
Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLS-SPQETRDLQYNNKQTKNLAVLSLAFPQND 231
M ++ + + + + + + + + ++ + +L +
Sbjct: 165 MDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHL 224
Query: 232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH---IDFSHLYLTS 288
V ++G + + A +V ++ E P + LS + +
Sbjct: 225 VGCLSFVSQEGTIN-FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG 283
Query: 289 SYDWSVKLWNIKE-NKPVHSFNEFRDYVMDV--QWSPINPALFATVEVAGRVDLWNLNLD 345
+ V +++ + P Y++ V +S + +TV V G ++N D
Sbjct: 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-D 342
Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
T+ L V + P D ++
Sbjct: 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 60.1 bits (146), Expect = 4e-10
Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 24/171 (14%)
Query: 221 AVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECY---EGHEGPVVGLSSHR 274
VL +A+ P ND N G ED V + G E EGH V
Sbjct: 83 PVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV------- 134
Query: 275 AQGHIDFS----HLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALF 328
G + + ++ L++ D + +W++ V + D + V WS + AL
Sbjct: 135 --GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALI 191
Query: 329 ATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379
T RV + T V EG + G L G +
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGFSR 241
Score = 45.8 bits (109), Expect = 1e-05
Identities = 49/314 (15%), Positives = 89/314 (28%), Gaps = 68/314 (21%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK 153
++ K + C +PVL + N +I G+ +++W+
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 154 TPVHRTPLSVM-AHTHPVFCMSVIGTQNAHN-LISISNDGRLCSWSLEMLSSPQETRDLQ 211
R P+ + HT V V A N L+S D + W + + L
Sbjct: 117 VLPLREPVITLEGHTKRV--GIVAWHPTAQNVLLSAGCDNVILVWDVG---TGAAVLTLG 171
Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGP--- 266
+ + S+ + ++ C D V R G E HEG
Sbjct: 172 PDVHPD---TIYSVDWSRDG-ALICTSCRDKRVRVIEP-RKGTVVA--EKDRPHEGTRPV 224
Query: 267 -----------VVGLSSHRAQ-------------------GHI----------DFSHLYL 286
G S + D + +YL
Sbjct: 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL 284
Query: 287 TSSYDWSVKLWNIKENKP-VHSFNEFR--DYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
D S++ + I P +H + F + + + P E+A R + L+
Sbjct: 285 CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIA-R--FYKLH 341
Query: 344 LDTEVPATSAIVEG 357
+ + + V
Sbjct: 342 -ERKCEPIAMTVPR 354
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 57.5 bits (138), Expect = 2e-09
Identities = 23/207 (11%), Positives = 63/207 (30%), Gaps = 18/207 (8%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN 243
+ DG L L + + N +T ++ N ++
Sbjct: 51 CMCRCEDGALHFTQL---KDSKTITTITTPNPRTGGEHPAIISRG--PCNRLLLLYPGNQ 105
Query: 244 --VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
+ + E ++ + H + + ++ + ++ + ++
Sbjct: 106 ITILDS---KTNKVLREIEVDSANEIIYMYGH----NEVNTEYFIWADNRGTIGFQSYED 158
Query: 302 NKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA 360
+ + + + L A G +D++NL+ + + + E A
Sbjct: 159 DSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217
Query: 361 LSRVTWTPNGTQLCVGDEKGAITMFDV 387
V + NG + V ++ + FD+
Sbjct: 218 KE-VKFADNGYWMVVECDQT-VVCFDL 242
Score = 51.7 bits (123), Expect = 1e-07
Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 18/183 (9%)
Query: 216 QTKNLAVLSLAFPQNDVNNFV--------VGCEDGNV-YSACRHGNKAGNVECYEGHEGP 266
Q +N + FP ++N + CEDG + ++ + + G
Sbjct: 24 QAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG 83
Query: 267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSP-IN 324
R + L + + + K NK + + + ++ + +N
Sbjct: 84 EHPAIISRGPCNR-----LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138
Query: 325 PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITM 384
F + G + + D++ SA + S + L + G + +
Sbjct: 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHKDSLLLALYSPDGILDV 196
Query: 385 FDV 387
+++
Sbjct: 197 YNL 199
Score = 50.5 bits (120), Expect = 4e-07
Identities = 31/259 (11%), Positives = 70/259 (27%), Gaps = 37/259 (14%)
Query: 95 PDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQ 151
DG K KT ++ P L+L QI + D++
Sbjct: 56 EDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP-GNQITILDSKTN 114
Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
K + + M N I N G + + +
Sbjct: 115 KVLREIEVD-----SANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQYIVHS 166
Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVG 269
+ S D + DG + Y+ ++A + E +
Sbjct: 167 AKSDV----EYSSGVL-HKDSLLLALYSPDGILDVYNL-SSPDQASSRF-PVDEEAKIKE 219
Query: 270 LSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENK-----PVHSFNEFRDYVMDVQWSP 322
+ F+ ++ D +V ++++++ P ++ EF+ +
Sbjct: 220 VK---------FADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270
Query: 323 INPALFATVEVAGRVDLWN 341
+ A + + ++
Sbjct: 271 SGKNMIAYSNESNSLTIYK 289
Score = 49.4 bits (117), Expect = 8e-07
Identities = 22/252 (8%), Positives = 63/252 (25%), Gaps = 31/252 (12%)
Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
+ + G + K T ++ ++I + L+ + +
Sbjct: 50 VCMCRCEDGALHFTQL----KDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQ 105
Query: 193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSACRHG 251
+ + + R+++ ++ ++ + F+ G + +
Sbjct: 106 ITILDS---KTNKVLREIEVDSANE----IIYMYGHNEVNTEYFIWADNRGTI--GFQSY 156
Query: 252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSF 308
+ L S D + ++N+ S
Sbjct: 157 EDDSQYIVHSAKSDVEYS--------SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR 208
Query: 309 NEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNL--NLDTEVPATSAIVEGAPALSRV 364
+ +V+++ N V ++L ++ T T I E
Sbjct: 209 FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266
Query: 365 TWTPNGTQLCVG 376
+G +
Sbjct: 267 DIDDSGKNMIAY 278
Score = 39.7 bits (92), Expect = 0.001
Identities = 31/231 (13%), Positives = 59/231 (25%), Gaps = 25/231 (10%)
Query: 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF-AKFNPYLILGGTYSGQIVLWDTRVQKK 153
P I ++K K E E + ++ + N + G I +
Sbjct: 102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ 161
Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN 213
VH + +++ L S DG L ++L +
Sbjct: 162 YIVHSAK-----SDVEYSSGVL--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE 214
Query: 214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS---ACRHGNKAGNVECYEGHEGPVVGL 270
+ + F N ++V D V G A + V
Sbjct: 215 A------KIKEVKFADN--GYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266
Query: 271 SSHR-----AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
+ + L + +D K W E + ++ D+
Sbjct: 267 DIDDSGKNMIAYSNESNSLTI-YKFDKKTKNWTKDEESALCLQSDTADFTD 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 2e-09
Identities = 59/402 (14%), Positives = 102/402 (25%), Gaps = 150/402 (37%)
Query: 57 FFDEKWSKNRNV--TY----MDWSTQHPELL--LASYHRNKEAPNEPDGVCLI-WNTKFK 107
+F+E R++ TY D E L L G+ ++ W
Sbjct: 169 YFEEL----RDLYQTYHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNILEWLEN-P 222
Query: 108 KTTPEFEFFCQSPVLSC---CFAKFNPYLIL----------------GGTYSGQIVL--- 145
TP+ ++ P+ SC + Y++ G T Q ++
Sbjct: 223 SNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 146 -------WDT-----------------RVQKKTPVHRTPLSVMA------HTHPVFCM-S 174
W++ R + P P S++ P M S
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLS 340
Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN 234
+ L+ Q + N + ++ N N
Sbjct: 341 ISN-----------------------LTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKN 376
Query: 235 FVVGCEDGNV---YSACRH--GNKAGNVECYEGHEGPVVGLSSHRA---QGHIDFSHLYL 286
VV G Y KA + GL R + + FS+ +L
Sbjct: 377 LVVS---GPPQSLYGLNLTLRKAKAPS------------GLDQSRIPFSERKLKFSNRFL 421
Query: 287 T------SSY-----------------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI 323
S ++ K I PV+ + D + V I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI----PVYDTFDGSD--LRVLSGSI 475
Query: 324 NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT 365
+ + + + V W AT + G S +
Sbjct: 476 SERIVDCI-IRLPVK-WETTTQF--KATHILDFGPGGASGLG 513
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 57.4 bits (139), Expect = 2e-09
Identities = 50/311 (16%), Positives = 99/311 (31%), Gaps = 46/311 (14%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKK 153
GV ++ + E P+ F + + G + G + +W+ ++
Sbjct: 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN--LEAP 100
Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQ----NAHNLISISNDGRLCSWSLEMLSSPQET-R 208
+ V H + + IG A +++ S DG + W P
Sbjct: 101 EMPVYS---VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157
Query: 209 DLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEG 265
+Q NK+ A+ + G ++G++ + + + +
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDL-----RNMALRWETNIKN 210
Query: 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF-----RDYVMDVQW 320
V L R + I + L + +S + +++++ P F + V V+
Sbjct: 211 GVCSLEFDR-KD-ISMNKL-VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267
Query: 321 SPINPALFATVEVAGRVDLWNLNLDTE--VPATSAIVEGAPALSR--------------V 364
P N LF T AG + LW + + I G +
Sbjct: 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327
Query: 365 TWTPNGTQLCV 375
W+P+ LCV
Sbjct: 328 DWSPDKRGLCV 338
Score = 34.3 bits (79), Expect = 0.061
Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 64/241 (26%)
Query: 96 DGVCLIWNTK--------FKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVL 145
DG +W+ + + E + C + + N ++ G +G I L
Sbjct: 138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY---NQEERVVCAGYDNGDIKL 194
Query: 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCM--SVIGTQNAHNLISISNDGRLCSWSLE--ML 201
+D R + V + L++ S +G+ + +
Sbjct: 195 FDLRNMA-------LRWETNIKNGVCSLEFDRKDISMNK-LVATSLEGKFHVFDMRTQHP 246
Query: 202 SSPQETRDLQYNNKQTKNLAVLSLAF-PQN-DVNNFVVGCEDGNV-----------YSAC 248
+ + + + V + PQN ++ F+ G +
Sbjct: 247 TKGFASVSEKAHKS-----TVWQVRHLPQNREL--FLTAGGAGGLHLWKYEYPIQRSKKD 299
Query: 249 RHGNKAGNVECYE------GHEGPVVGLSSHRAQGHIDFS----HLYLTSSYDWSVKLWN 298
G + G P+ +D+S L + SS+D +V++
Sbjct: 300 SEGIEMGVAGSVSLLQNVTLSTQPISS---------LDWSPDKRGLCVCSSFDQTVRVLI 350
Query: 299 I 299
+
Sbjct: 351 V 351
Score = 33.1 bits (76), Expect = 0.14
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 287 TSSYDWSVKLWNIKENK-PVHSFNEFRDYVMDVQW------SPINPALFATVEVAGRVDL 339
T + ++ +WN++ + PV+S ++ + + T G V +
Sbjct: 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKV 143
Query: 340 WNLNLDTEVPATSAIVEG-------APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
W+ + A V+G A + +C G + G I +FD+
Sbjct: 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFG-NAYNQEERVVCAGYDNGDIKLFDL 197
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 56.4 bits (136), Expect = 4e-09
Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 19/215 (8%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHP--VFCMSV 175
++ + C K+ ++ ++ G I + D R + L+ +F M
Sbjct: 99 EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158
Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
++ LI N+ ++ + L + T + Q + +A + +
Sbjct: 159 NSSR----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ-----IRDVALLPKEQEGY 209
Query: 236 VVGCEDGNVYSAC----RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY---LTS 288
DG V + + H + + I+FS + T+
Sbjct: 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269
Query: 289 SYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQWSP 322
D + WN++ K + +F +F D V+ + S
Sbjct: 270 GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Score = 49.8 bits (119), Expect = 7e-07
Identities = 39/268 (14%), Positives = 74/268 (27%), Gaps = 38/268 (14%)
Query: 96 DGVCLIWN--TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD--TRVQ 151
DG ++ + K + P+L C F I GT G+I+ D
Sbjct: 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91
Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
+ + + + + I LI+ S DG +
Sbjct: 92 FQALTN--------NEANL-GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142
Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY-SACRHGNKAGNVECYEGHEGPVVGL 270
+N + ++ + + +VG + V G + + +
Sbjct: 143 NSNNTKVKNKIFTMDT---NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199
Query: 271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN------KPVHSFNEFRDY---------V 315
+ + Y SS D V + + +F R V
Sbjct: 200 ALLPKEQ-----EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254
Query: 316 MDVQWSPINPALFATVEVAGRVDLWNLN 343
+++SP + T G + WNL
Sbjct: 255 NSIEFSPRH-KFLYTAGSDGIISCWNLQ 281
Score = 40.2 bits (94), Expect = 7e-04
Identities = 29/231 (12%), Positives = 60/231 (25%), Gaps = 40/231 (17%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQ---SPVLSCCFAK-FNPYLILGGTYSGQIVLWDTRVQ 151
DG+ + + + + V + F N ++ G + Q+ + +
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL- 210
+ + V + S DGR+ + +
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEG----YACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 211 ------QYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY-----SACRHGNKAGNVE 258
V S+ F P DG + + + N A
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFA---- 290
Query: 259 CYEGHEGPVVGLSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHS 307
+ +E VV ++ S L L +S D I + +++
Sbjct: 291 --KFNEDSVVKIA---------CSDNILCLATSDDTFKTNAAIDQTIELNA 330
Score = 36.7 bits (85), Expect = 0.010
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 286 LTSSYDWSVKLWNIKEN----KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
L +S+D S+ ++ + S ++ ++ + V G + +
Sbjct: 27 LITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85
Query: 342 LN 343
L
Sbjct: 86 LI 87
Score = 27.9 bits (62), Expect = 5.9
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE-GAPALSRVTWTPN-G 370
DY+ D++ P + +L G + ++ ++ + + P L + N
Sbjct: 12 DYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC-CNFIDNTD 69
Query: 371 TQLCVGDEKGAITMFDV 387
Q+ VG +G I D+
Sbjct: 70 LQIYVGTVQGEILKVDL 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 53.4 bits (129), Expect = 6e-08
Identities = 39/268 (14%), Positives = 76/268 (28%), Gaps = 56/268 (20%)
Query: 101 IWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT 159
W + +T P+ + PVL C++ + + + +WD + +
Sbjct: 68 CWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIA-- 124
Query: 160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-----------------LS 202
H PV + I N +++ S D L W +
Sbjct: 125 -----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179
Query: 203 SPQET----------RDLQYNNKQTKNL------AVLSLAF---PQNDVNNFVVGCEDGN 243
P L+ + + + +A QN F +G +G
Sbjct: 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239
Query: 244 VYSACRH---GNKAGNVECYEGHEGPVVGLSSHRAQGH---IDFS--HLYL-TSSYDWSV 294
V A + N A + ++ H S+ + I F H L T D
Sbjct: 240 V--AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297
Query: 295 KLWNIKENKPVHSFNEFRDYVMDVQWSP 322
W+ + + + + ++
Sbjct: 298 SFWDKDARTKLKTSEQLDQPISACCFNH 325
Score = 38.0 bits (89), Expect = 0.004
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 280 DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVD- 338
+ ++ +++ D + +I+ D + + +SP P L +AG
Sbjct: 13 SGTSMFGSATTDNHNPMKDIEVTSS-PD-----DSIGCLSFSP--PTLPGNFLIAGSWAN 64
Query: 339 ---LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
W + + + + P L V W+ +G+++ M+D+
Sbjct: 65 DVRCWEVQDSGQTIPKAQQMHTGPVLD-VCWSDDGSKVFTASCDKTAKMWDL 115
Score = 33.8 bits (78), Expect = 0.085
Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 27/191 (14%)
Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-IGTQNAHNLISISNDG 191
+ T + D V + + C+S T + LI+ S
Sbjct: 17 MFGSATTDNHNPMKDIEVTS------------SPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
Query: 192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG 251
+ W ++ S Q Q + VL + + + + D
Sbjct: 65 DVRCWEVQ--DSGQTIPKAQQMHTG----PVLDVCWSDDG-SKVFTASCDKTA---KMWD 114
Query: 252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF 311
+ H+ PV + ++S + +T S+D ++K W+ + + P+
Sbjct: 115 LSSNQAIQIAQHDAPV---KTIHWIKAPNYSCV-MTGSWDKTLKFWDTRSSNPMMVLQLP 170
Query: 312 RDYVMDVQWSP 322
P
Sbjct: 171 ERCYCADVIYP 181
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 51.6 bits (124), Expect = 2e-07
Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 45/274 (16%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
S + +P + G+ G I+LW+ ++ K + +
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI--KGI--GAGGSITGLK-FN 173
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLSLAF-PQNDVNNF 235
N + + S +G + L+ + + T N+ SL
Sbjct: 174 PLNTNQFYASSMEGTTRLQDFK-------GNILRVFASSDTINIWFCSLDVSA--SSRMV 224
Query: 236 VVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HLYLTSS 289
V G GNV + + H+ V H+ + T+S
Sbjct: 225 VTGDNVGNVILLNM-----DGKELWNLRMHKKKVT---------HVALNPCCDWFLATAS 270
Query: 290 YDWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
D +VK+W++++ + SF V +SP + A T + + +++ +
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS-QW 328
Query: 347 EVPAT----SAIVEGAPALSRVTWTPNGTQLCVG 376
+ P + W P + VG
Sbjct: 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
Score = 35.4 bits (82), Expect = 0.031
Identities = 28/205 (13%), Positives = 65/205 (31%), Gaps = 37/205 (18%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI- 176
+ V + + + + +WD R + + L + H HPV +
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR---GKASFLYSLPHRHPV--NAACF 304
Query: 177 ---GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLSLAFPQNDV 232
G + L++ + +S L + ++ ++L + A+
Sbjct: 305 SPDGAR----LLTTDQKSEIRVYSAS---QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 233 NNFVVGCEDGNVYSACRHGNKA--------GNVEC--YEGHEGPVVGLSSHRAQGHIDFS 282
V D N S + + G + C Y+ + L+ +F+
Sbjct: 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLN--------EFN 409
Query: 283 H--LYLTSSYDWSVKLWNIKENKPV 305
L S+ + + +W+ +E +
Sbjct: 410 PMGDTLASAMGYHILIWSQQEARTR 434
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 51.8 bits (125), Expect = 2e-07
Identities = 32/295 (10%), Positives = 79/295 (26%), Gaps = 37/295 (12%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
D IWN K + + ++ + +G I +
Sbjct: 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALVSISANGFINFVNPE----LG 314
Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
H + +S + + L S +G + SW + + R +
Sbjct: 315 SIDQVRY--GHNKAITALSS--SADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHA 367
Query: 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHR 274
+ + + D ++ G+ + + +GL+
Sbjct: 368 T----MITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA--- 418
Query: 275 AQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE 332
S ++ + +++ K + V S + A
Sbjct: 419 ------VSADGDIAVAACYKHIAIYSHG--KLTEVPISYNSSC--VALSN-DKQFVAVGG 467
Query: 333 VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+V ++ L+ + + + + V ++ NG L D+ + + V
Sbjct: 468 QDSKVHVYKLSGASVSEVKTIVHPAEI--TSVAFSNNGAFLVATDQSRKVIPYSV 520
Score = 46.0 bits (110), Expect = 2e-05
Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 47/238 (19%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
+G W+ + F + + L + + + +
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVS-WDDHLKVVPA---GGSG 399
Query: 156 VHRTPLSVMAHTHPVFCMSVI--GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN 213
V + + ++V G + + + +S L+ + +
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSADGD-----IAVAACYKHIAIYSHGKLTEVPISYN---- 450
Query: 214 NKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGL 270
+A D VG +D V Y G V+ H + +
Sbjct: 451 --------SSCVALSN--DKQFVAVGGQDSKVHVYKL--SGASVSEVKT-IVHPAEITSV 497
Query: 271 SSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSP 322
+ FS+ +L + V +++ N + N + V V WSP
Sbjct: 498 A---------FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546
Score = 44.5 bits (106), Expect = 4e-05
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
G + +DF + + S D +V ++ K +F E +V
Sbjct: 144 TGQARAMNS---------VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194
Query: 317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR----VTWTPNGTQ 372
V+++P + +LFA+ G + L+N T+ A S +TW+P+GT+
Sbjct: 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 373 L 373
+
Sbjct: 254 I 254
Score = 44.5 bits (106), Expect = 5e-05
Identities = 29/270 (10%), Positives = 72/270 (26%), Gaps = 42/270 (15%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
+ S F P+ I+ G+ + +++ K HT V +
Sbjct: 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE------HTKFVHSVRY-- 198
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK--NLAVLSLAF-PQNDVNN 234
+ S DG + ++ +T + ++ + + +V L + P D
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGV---DGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTK 253
Query: 235 FVVGCEDGNVY------SACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYL 286
D + G +G+ L +
Sbjct: 254 IASASADKTIKIWNVATLKVEK-------TIPVGTRIEDQQLGIIW-------TKQAL-V 298
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+ S + + N + + + S + + + G ++ W+++
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGI 357
Query: 347 EVPATSAIVEGAPALSRVTWTPNGTQLCVG 376
+ ++ + T G V
Sbjct: 358 SNRVFPDVHAT--MITGIKTTSKGDLFTVS 385
Score = 38.7 bits (91), Expect = 0.003
Identities = 21/211 (9%), Positives = 62/211 (29%), Gaps = 37/211 (17%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
I++ P + ++ +GG ++ ++ + +
Sbjct: 431 YKHIAIYSHGKLTEVPI-----SYNSSCVALSNDKQFVAVGG-QDSKVHVYK--LSGASV 482
Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
+ H + ++ + N L++ ++ +S+ T ++
Sbjct: 483 SEVKTI---VHPAEITSVAF--SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537
Query: 216 QTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSS 272
V +++ P D G D +V ++ + + ++ H V
Sbjct: 538 -----KVACVSWSP--DNVRLATGSLDNSVIVWNMNKPSDHPIIIK--GAHAMSSVNSV- 587
Query: 273 HRAQGHIDFS---HLYLTSSYDWSVKLWNIK 300
+++ D ++K WN+
Sbjct: 588 --------IWLNETTIVSAGQDSNIKFWNVP 610
Score = 34.1 bits (79), Expect = 0.072
Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 270 LSSHRAQG-HIDFS----HLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI 323
+ R + + + + + ++V + ++ + + + E + SP
Sbjct: 14 PRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTSP- 69
Query: 324 NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG----DEK 379
+ A+ +V G V +W+ T + T+ V P ++W ++ +
Sbjct: 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD-ISWDSESKRIAAVGEGRERF 128
Query: 380 GAITMFDVGE 389
G + +FD G
Sbjct: 129 GHVFLFDTGT 138
Score = 30.2 bits (69), Expect = 1.2
Identities = 8/88 (9%), Positives = 18/88 (20%), Gaps = 14/88 (15%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWS--VKLWNIKENKPVHSFNEFRDY 314
GPV +S + ++ +
Sbjct: 99 IPVFSGPVKDIS---------WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 149
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNL 342
+ V + P P + V ++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEG 177
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 51.1 bits (123), Expect = 3e-07
Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 63/258 (24%)
Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
++ + +W+ V + + V SV + + L +G +
Sbjct: 106 VVAVALERNVYVWNADSGS---VSALAET--DESTYV--ASVKWSHDGSFLSVGLGNGLV 158
Query: 194 CSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLAFPQNDVNNFVVGCEDGNVYSAC 248
+ +E + + + + V L++ + + G G +
Sbjct: 159 DIYDVE-------------SQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAI---- 198
Query: 249 RHGN-KAGN--VECYEGHEGPVVGLSSHRAQGHIDFS--HLYLTS-SYDWSVKLWNIKEN 302
H + + N + +GH V GL+ + L L S D V++W+ + +
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLA---------WRSDGLQLASGGNDNVVQIWDARSS 249
Query: 303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVD----LWNLNLDTEVPATSAIVEGA 358
P + V V W P L AT G +D WN T A V
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLAT--GGGTMDKQIHFWNAA-------TGARVNTV 300
Query: 359 PALSRVT---WTPNGTQL 373
A S+VT W+P+ ++
Sbjct: 301 DAGSQVTSLIWSPHSKEI 318
Score = 42.2 bits (100), Expect = 2e-04
Identities = 19/149 (12%), Positives = 51/149 (34%), Gaps = 29/149 (19%)
Query: 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239
+ N+++++ + + W+ + S + + + V S+ + + + VG
Sbjct: 102 SNLNVVAVALERNVYVWNAD---SGSVSALAETDESTY----VASVKWSHDG-SFLSVGL 153
Query: 240 EDGNVY----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSV 294
+G V + + GH+ V LS ++ L+S S ++
Sbjct: 154 GNGLVDIYDVESQTK------LRTMAGHQARVGCLS---------WNRHVLSSGSRSGAI 198
Query: 295 KLWNIKENKP-VHSFNEFRDYVMDVQWSP 322
+++ + + V + W
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Score = 29.1 bits (66), Expect = 2.8
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM--SVIGTQNAHNLIS 186
+N +++ G+ SG I D R+ L H+ V + G Q L S
Sbjct: 184 WNRHVLSSGSRSGAIHHHDVRIANH---QIGTLQ--GHSSEVCGLAWRSDGLQ----LAS 234
Query: 187 ISNDGRLCSWSLEM 200
ND + W
Sbjct: 235 GGNDNVVQIWDARS 248
Score = 27.6 bits (62), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 364 VTWTPNGTQLCVGDEKGAITMFDV 387
V W+ +G+ L VG G + ++DV
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDV 163
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 51.3 bits (123), Expect = 3e-07
Identities = 32/249 (12%), Positives = 73/249 (29%), Gaps = 40/249 (16%)
Query: 96 DGVCLIWNTKFKKT----TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD---- 147
GV IWN K + + C S V N + GQI++
Sbjct: 85 QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHY 143
Query: 148 -----TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
+ + + L M + L++++N R+ + +
Sbjct: 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR--- 200
Query: 203 SPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVYSAC----RHGNKAGNV 257
+ + + ++ + + AV S+ + ++G G + R +
Sbjct: 201 TLERLQIIENSPRHG---AVSSICIDE--ECCVLILGTTRGII---DIWDIRFNVLIRSW 252
Query: 258 ECYEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDY 314
G P+ + + + + S + +WN + ++F +
Sbjct: 253 SF--GDHAPITHVEVC-----QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305
Query: 315 VMDVQWSPI 323
+ PI
Sbjct: 306 PSMEHFLPI 314
Score = 42.9 bits (101), Expect = 1e-04
Identities = 20/250 (8%), Positives = 64/250 (25%), Gaps = 53/250 (21%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP---YLILGGTYSGQIVLWDTRVQK 152
G+ IW+ +F + F +P+ +F +++GG+ + +W+
Sbjct: 235 RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF---- 290
Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-LCSWSLEMLSSPQETRDLQ 211
+ ++ + L + + S +
Sbjct: 291 VKGHCQYAFI--NSDEQP------------SMEHFLPIEKGLEELNFCGIRSLNALSTIS 336
Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS 271
+N + + ++ ++ +
Sbjct: 337 VSNDKI-----------------LLTDEATSSI--------VMFSLN---ELSSSKA-VI 367
Query: 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFAT 330
S + F +T++ ++ V D + + ++ L
Sbjct: 368 SPSRFSDV-FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426
Query: 331 VEVAGRVDLW 340
+ +G + ++
Sbjct: 427 CDNSGLIGIF 436
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 8/134 (5%)
Query: 260 YEGHEGPVVGL--SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVM 316
EG + + D+ S + N++ K + + E + +
Sbjct: 9 GEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLR-GKLIATLMENEPNSIT 67
Query: 317 DVQWSPINPALFATVEVAGRVDLWNLN-LDTEVPATSAIVEG--APALSRVTWTPNGTQL 373
SP T G + +WNL + +S++ + +T PN
Sbjct: 68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQ-ITMIPNFDAF 126
Query: 374 CVGDEKGAITMFDV 387
V + G I + V
Sbjct: 127 AVSSKDGQIIVLKV 140
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 50.9 bits (121), Expect = 4e-07
Identities = 50/298 (16%), Positives = 84/298 (28%), Gaps = 72/298 (24%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRT------------------------------ 159
N L T I LW + K P
Sbjct: 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165
Query: 160 --PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217
P + A+ H S+ + +S ++D R+ W LE+ D++ N +
Sbjct: 166 ASPRRIFANAHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEE 224
Query: 218 KNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPV--VGLSSH 273
+ + F N N FV G + + + +E E P S
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284
Query: 274 RAQ-GHIDFSH--LYLTSSYDWSVKLWNI-KENKPVHSFNEFRDYVMDVQWSPINPALFA 329
+ + FSH Y+ + SVK+W++ EN+PV ++ + N +F
Sbjct: 285 ISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344
Query: 330 TVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
E W + + + G MFD
Sbjct: 345 KFECC-------------------------------WNGSDSVVMTGSYNNFFRMFDR 371
Score = 45.1 bits (106), Expect = 2e-05
Identities = 36/315 (11%), Positives = 86/315 (27%), Gaps = 49/315 (15%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKK 153
G + W K + + + + F N L+ G G++V++ + K
Sbjct: 6 GGNDIQWCFSQVKGAVDDDVAEADIISTVEF---NHSGELLATGDKGGRVVIFQQEQENK 62
Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS--WS-----LEMLSSPQE 206
H + V+ L S+ + ++ W + L S +
Sbjct: 63 IQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116
Query: 207 TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP 266
+ ++ ++ + D R +
Sbjct: 117 -KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR----- 170
Query: 267 VVGLSSHRAQGH-IDFSH--LYLTSSYDWSVKLWNIKENKPV--------HSFNEFRDYV 315
+ ++H + I + S+ D + LW+++ + E + +
Sbjct: 171 -IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVI 229
Query: 316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR------------ 363
++ P + F G + L ++ S + E S
Sbjct: 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS 289
Query: 364 -VTWTPNGTQLCVGD 377
V ++ +G + D
Sbjct: 290 DVKFSHSGRYMMTRD 304
Score = 37.8 bits (87), Expect = 0.005
Identities = 23/267 (8%), Positives = 67/267 (25%), Gaps = 50/267 (18%)
Query: 96 DGVCLIWNTK-------FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT 148
D +W+ + P + + F + + + G I L D
Sbjct: 197 DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256
Query: 149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR 208
R R P ++ + + S+ GR M++ +
Sbjct: 257 R--ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY------MMTRDYLSV 308
Query: 209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVV 268
+ N + + + + E +
Sbjct: 309 KVWDLNMENRPVETYQV-------------------------------HEYLRSKLCSLY 337
Query: 269 GLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP 325
+ ++ + +T SY+ ++++ + + + P
Sbjct: 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP-RK 396
Query: 326 ALFATVEVAGRVDLWNLNLDTEVPATS 352
+ + + +L+ + ++ T+
Sbjct: 397 VCASGKRKKDEISVDSLDFNKKILHTA 423
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 50.1 bits (119), Expect = 6e-07
Identities = 31/260 (11%), Positives = 78/260 (30%), Gaps = 25/260 (9%)
Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
S + + LI ++++D ++
Sbjct: 103 SYIRNLRLTSDESRLIACADSDKSLLVFDV----DKTSKNVLKLRKRFCFSKRPNAISIA 158
Query: 179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVV 237
++ +I G + S + + + T++ + + + +D + F++
Sbjct: 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM----LTDVHLIKDSDGHQFII 214
Query: 238 -GCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFS--HLYLTSSYDWS 293
D ++ H + V+ + GH+ V SS I +L L++ D
Sbjct: 215 TSDRDEHI--KISHYPQCFIVDKWLFGHKHFV---SS------ICCGKDYLLLSAGGDDK 263
Query: 294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR-VDLWNLNLDTEVPATS 352
+ W+ K K + +F+ + + P F + + +P +
Sbjct: 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323
Query: 353 AIVEGAPALSRVTWTPNGTQ 372
VE + + +
Sbjct: 324 FFVEATKCIIILEMSEKQKG 343
Score = 40.5 bits (94), Expect = 8e-04
Identities = 14/106 (13%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Query: 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
L S+ S+K K P Y+ +++ + L A + + +++++
Sbjct: 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKT 135
Query: 346 TE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390
++ V + + ++ + T + + D+ G + D+ +
Sbjct: 136 SKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 50.3 bits (121), Expect = 7e-07
Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 40/236 (16%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-- 175
+ +C + P + G +V + K + RT V +
Sbjct: 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSP 216
Query: 176 -IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF--PQNDV 232
G +I++ +D ++ + + S + + ++ + + V F D
Sbjct: 217 DSGEF----VITVGSDRKISCFDGK---SGEFLKYIEDDQE-----PVQGGIFALSWLDS 264
Query: 233 NNFVVGCEDGNVYSACR----HGNKAGNVECYEGHEGPVVGLS-SHRAQGHIDFSHLYLT 287
F D + R +K + + + G I ++
Sbjct: 265 QKFATVGADATI----RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI------IS 314
Query: 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
S D ++ + + ++ + + + + + +P+ + GR+ W+ +
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS 365
Score = 48.0 bits (115), Expect = 3e-06
Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 65/274 (23%)
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
+WD V V + ++ + V+ T N +IS+S DG L + L
Sbjct: 278 VWD--VTTSKCVQK--WTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELG---HD 329
Query: 205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-CYEGH 263
+ + + +NK + +L N + G DG + + ++ H
Sbjct: 330 EVLKTISGHNK-----GITALTV-----NPLISGSYDGRI--------MEWSSSSMHQDH 371
Query: 264 EGPVVGLS------------------------SHRAQGHIDFSH---LYLTSSYDWSVKL 296
+V L +Q + ++ + D + +
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431
Query: 297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV--PATSA 353
+ S + + + + L L +L + ++ P +
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL-EEGNTIQVFKLSDLEVSFDLKTPLRAK 490
Query: 354 IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
S ++ +P+ T + GD G I ++D+
Sbjct: 491 P-------SYISISPSETYIAAGDVMGKILLYDL 517
Score = 41.5 bits (98), Expect = 4e-04
Identities = 37/299 (12%), Positives = 82/299 (27%), Gaps = 85/299 (28%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI- 176
+ + NP ++ G+Y G+I+ W + + H++ + +
Sbjct: 339 NKGITALTV---NP--LISGSYDGRIMEWSSSSMHQ-----------DHSNLIVSLDNSK 382
Query: 177 GTQNAHNLISISNDGRLCSWSLE---------MLSSPQ------------------ETRD 209
+ SIS D L + + S+ T D
Sbjct: 383 AQE----YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438
Query: 210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269
+ + + + +SL+ N VG E+GN + + + +
Sbjct: 439 IIKSVRLNSPGSAVSLSQ-----NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 493
Query: 270 LSSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQWSPINP 325
+S S Y+ + L++++ + S F + + W P
Sbjct: 494 IS---------ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 326 ALFATVEVAGRV-----D----LWNLNLDTEVPAT----SAIVEGAPALSRVTWTPNGT 371
V D ++++ ++ V + W T
Sbjct: 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN------LLWETPST 597
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 21/135 (15%)
Query: 221 AVLSLAF-PQNDVNNFVVGCEDGNVY------SACRHGNKAGNVECYEGHEGPVVGLSSH 273
V ++ F P G E G V + + ++ GP+ +S
Sbjct: 66 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS-- 123
Query: 274 RAQGHIDFS----HLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF 328
+ L + D + + + + P
Sbjct: 124 -------WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 176
Query: 329 ATVEVAGRVDLWNLN 343
TV G V +
Sbjct: 177 MTVGDDGSVVFYQGP 191
Score = 38.8 bits (91), Expect = 0.003
Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 46/191 (24%)
Query: 141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI---GTQNAHNLISISNDGRLCSWS 197
+I +D K+ + PV I ++ ++ D + W
Sbjct: 229 RKISCFDG----KSGEFLKYIE--DDQEPV--QGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY------SACRHG 251
+ + + + + L + + DG +
Sbjct: 281 VT---TSKCVQKWTL---DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV--- 331
Query: 252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF 311
++ GH + L+ + L + SYD + W+ HS
Sbjct: 332 -----LKTISGHNKGITALT---------VNPLI-SGSYDGRIMEWSSSSMHQDHS---- 372
Query: 312 RDYVMDVQWSP 322
+ ++ + S
Sbjct: 373 -NLIVSLDNSK 382
Score = 35.7 bits (83), Expect = 0.024
Identities = 29/221 (13%), Positives = 68/221 (30%), Gaps = 50/221 (22%)
Query: 96 DGVCLIWN-TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD--TRVQK 152
D + ++ + T + +S L G T L D
Sbjct: 427 DDLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEGNTI-QVFKLSDLEVSFDL 483
Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212
KTP +S+ + + + + G++ + L+ +R+++
Sbjct: 484 KTP----------LRAKPSYISI--SPSETYIAAGDVMGKILLYDLQ-------SREVKT 524
Query: 213 NNKQTKNLAVLSLAF---------PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYE 261
+ + + ++++ + + + G D N+ YS R ++
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKALN 581
Query: 262 GHEGPVVGLSSHRAQGHIDFS--HLYLTSSYDWSVKLWNIK 300
H+ V L + ++S D +K WN+
Sbjct: 582 AHKDGVNNLL---------WETPSTLVSSGADACIKRWNVV 613
Score = 28.7 bits (65), Expect = 4.2
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 271 SSHRAQG-HIDFS----HLYLTSSYDWSVKLWNIKENK--PVHSFNE-FRDYVMDVQWSP 322
S+ R H+ + + V+ + ++K PV F V V++SP
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 323 I-NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-----APALSRVTWTPNGTQLCV- 375
I + + +G+V +W D E + V+ A +S ++W G +LCV
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 376 -GDEKGAITMFDV 387
Sbjct: 135 GEGRDNFGVFISW 147
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 51/215 (23%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
S V + ++ G+ + +WD +T L H V C+ G
Sbjct: 199 TSTVRCMHL---HEKRVVSGSRDATLRVWDI----ETGQCLHVLM--GHVAAVRCVQYDG 249
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
+ ++S + D + W E + LQ + + V SL F D + V
Sbjct: 250 RR----VVSGAYDFMVKVWDPE---TETCLHTLQGHTNR-----VYSLQF---DGIHVVS 294
Query: 238 GCEDGNVYSACRHGNK---AGNVEC---YEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SY 290
G D ++ + C GH+ G+ L S +
Sbjct: 295 GSLDTSI--------RVWDVETGNCIHTLTGHQSLTSGME---------LKDNILVSGNA 337
Query: 291 DWSVKLWNIKENKPVHSF---NEFRDYVMDVQWSP 322
D +VK+W+IK + + + N+ + V +Q++
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372
Score = 41.1 bits (97), Expect = 4e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
GH G V + S S D ++K+WN + + +H+ V +
Sbjct: 156 VGHTGGVWSSQ---------MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206
Query: 320 WSP 322
Sbjct: 207 LHE 209
Score = 36.5 bits (85), Expect = 0.014
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
+GH+ V+ + + ++ S D ++K+W+ K + + V Q
Sbjct: 115 KGHDDHVITCLQF------CGNRI-VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 167
Query: 321 SP 322
Sbjct: 168 RD 169
Score = 35.3 bits (82), Expect = 0.031
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 35/162 (21%)
Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLS 224
HT V CM + + ++S S D L W +E + Q L + AV
Sbjct: 198 HTSTVRCMHLHEKR----VVSGSRDATLRVWDIE---TGQCLHVLMGHVA------AVRC 244
Query: 225 LAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
+ + D V G D V + +GH V L D
Sbjct: 245 VQY---DGRRVVSGAYDFMVKVWDPETETC------LHTLQGHTNRVYSLQ-------FD 288
Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
H+ ++ S D S+++W+++ +H+ + ++
Sbjct: 289 GIHV-VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Score = 32.6 bits (75), Expect = 0.24
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 50/232 (21%)
Query: 99 CLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHR 158
L+W K K+ + + + +P+ W +
Sbjct: 56 NLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRR------GELK 109
Query: 159 TPLSVMAHTHPVF-CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQ 216
+P + H V C+ G + ++S S+D L WS + + R L +
Sbjct: 110 SPKVLKGHDDHVITCLQFCGNR----IVSGSDDNTLKVWSAV---TGKCLRTLVGHTG-- 160
Query: 217 TKNLAVLSLAFPQNDVNNFVV-GCEDG-----NVYS-ACRHGNKAGNVECYEGHEGPVVG 269
V S +N ++ G D N + C H GH V
Sbjct: 161 ----GVWSSQM----RDNIIISGSTDRTLKVWNAETGECIH--------TLYGHTSTVR- 203
Query: 270 LSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
+ + S S D ++++W+I+ + +H V VQ+
Sbjct: 204 --------CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 48.8 bits (117), Expect = 1e-06
Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 53/289 (18%)
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHN-----LISISNDGRLCSWSLE 199
++D V+ + L H PV+ ++ AH L S S D ++ W E
Sbjct: 39 IFD--VRNGGQILIADLR--GHEGPVWQVAW-----AHPMYGNILASCSYDRKVIIWREE 89
Query: 200 MLSSPQETRDLQYNNKQTKNLA-----VLSLAFPQNDVNNFVV-GCEDGNV--YSACRHG 251
+ ++ A V S+ + +D + G DG + +
Sbjct: 90 -------NGTWE----KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY-TGE 137
Query: 252 NKAGNVECYEGHEGPV----------VGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIK 300
+ + H G G S D +KLW +
Sbjct: 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197
Query: 301 ENKPVHSFNEFR---DYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDTEVPATSAI 354
E+ + D+V DV W+P +T+ GRV +W + + + +
Sbjct: 198 EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL 257
Query: 355 VEGAP-ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG-IACLKFITSG 401
+ + V+W+ L V +T++ G C+ + G
Sbjct: 258 LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG 306
Score = 34.9 bits (81), Expect = 0.036
Identities = 39/230 (16%), Positives = 66/230 (28%), Gaps = 43/230 (18%)
Query: 118 QSPVLSCCFAKFNPYLILG-GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC---- 172
S V S C+A + LIL G+ G I L + + V + AHT
Sbjct: 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN---NAHTIGCNAVSWA 159
Query: 173 -----------MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNL 220
S S D + W E +E + L+ +++
Sbjct: 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD------ 213
Query: 221 AVLSLAFPQNDVNNF---VVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSSHRA 275
V +A+ + +DG V ++ + + + V
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVW------- 266
Query: 276 QGHIDFSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
H+ +S L S D V LW + ++ V S
Sbjct: 267 --HVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
Score = 29.9 bits (68), Expect = 1.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 287 TSSYDWSVKLWNIK--ENKPVHSFNEFRDYVMDVQWSP 322
T S D SVK+++++ + V V W+
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 49.1 bits (118), Expect = 1e-06
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 27/145 (18%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
+GH G + S ID +T S D+S+KLW++ + V ++ + V
Sbjct: 70 LDGHTGTI---WS------IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVK 119
Query: 317 DVQWSP----INPALFATVEVAGRVDLWNLNLDTEVP-------ATSAIVEGAPALSRVT 365
V++SP L ++ G ++++ + D+ + L T
Sbjct: 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179
Query: 366 ---WTPNGTQLCVGDEKGAITMFDV 387
W+ G + G + G I+ +DV
Sbjct: 180 VAGWSTKGKYIIAGHKDGKISKYDV 204
Score = 36.0 bits (84), Expect = 0.016
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GHE P+ + ++ L + S D S +W + + + + +
Sbjct: 29 TGHERPLT---------QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 318 VQWSP 322
+
Sbjct: 80 IDVDC 84
Score = 32.6 bits (75), Expect = 0.20
Identities = 29/265 (10%), Positives = 70/265 (26%), Gaps = 60/265 (22%)
Query: 95 PDGVCL----------IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGT---- 138
+W+ + ++ PV F +P L
Sbjct: 84 CFTKYCVTGSADYSIKLWDVSNGQCVATWKS--PVPVKRVEF---SPCGNYFLAILDNVM 138
Query: 139 -YSGQIVLWDTR----VQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
G I +++ + T V P+ ++ H + +I+ DG+
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVYSACRHG 251
+ + + ++ ++ + F P D+ F+ D N
Sbjct: 199 ISKYDVS-------NNYEYVDSIDLHEKSISDMQFSP--DLTYFITSSRDTNS------- 242
Query: 252 NK---AGNVEC---YEGHEGPV--VGLS---SHRAQGHIDFSHLYLT---SSYDWSVKLW 297
++ YE P+ ++ G + T + + + +
Sbjct: 243 -FLVDVSTLQVLKKYETD-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSP 322
+ + + + V SP
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISP 325
Score = 31.4 bits (72), Expect = 0.44
Identities = 24/211 (11%), Positives = 59/211 (27%), Gaps = 50/211 (23%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
++ Y+I G G+I +D + + + H + M
Sbjct: 175 LDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYE---YVDSID--LHEKSISDMQF-- 226
Query: 178 TQNAHNLISISNDGRLCSW---SLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVN 233
+ + I+ S D +L++L + + + P
Sbjct: 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP------------LNTAVITP--LKE 272
Query: 234 NFVVGCEDGNVYSACRHGNKAGN------------VECYEGHEGPVVGLSSHRAQGHIDF 281
++G N+ + +GH GP+ ++
Sbjct: 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA---------I 323
Query: 282 SH---LYLTSSYDWSVKLWNIKENKPVHSFN 309
S Y + D ++L + +++ ++
Sbjct: 324 SPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 48.9 bits (117), Expect = 2e-06
Identities = 55/249 (22%), Positives = 84/249 (33%), Gaps = 36/249 (14%)
Query: 84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143
+ ++ + V + N +I+ + I
Sbjct: 349 NAASGRQTVDAALAAAQTNAAAGLVLKGTMRA-HTDMVTAIATPIDNADIIVSASRDKSI 407
Query: 144 VLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
+LW T+ K V + L+ H+H V V+ + + +S S DG L W L
Sbjct: 408 ILWKLTKDDKAYGVAQRRLT--GHSHFVE--DVVLSSDGQFALSGSWDGELRLWDLA--- 460
Query: 203 SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV-GCEDG-----NVYSACRHGNKAGN 256
+ TR + K VLS+AF + N +V D N C K
Sbjct: 461 AGVSTRRFVGHTK-----DVLSVAFSLD--NRQIVSASRDRTIKLWNTLGEC----KYTI 509
Query: 257 VECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRD 313
E EGH V V S + + S S+D +VK+WN+ K +
Sbjct: 510 SEGGEGHRDWVSCVRFSP-------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 314 YVMDVQWSP 322
YV V SP
Sbjct: 563 YVSTVAVSP 571
Score = 47.0 bits (112), Expect = 7e-06
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 28/208 (13%)
Query: 120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ 179
P+ + + L + + + QK + P + +
Sbjct: 298 PLGAVALKSYEEELAKDPRIA--ATMEN--AQKGEIMPNIPQM---SAFWYAVRTAVINA 350
Query: 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239
+ + + + L R V ++A P ++ + V
Sbjct: 351 ASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDM--------VTAIATPIDNADIIVSAS 402
Query: 240 EDGNV--YSACRHGNKAGN-VECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSV 294
D ++ + + G GH V V LSS D L+ S+D +
Sbjct: 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-------DGQFA-LSGSWDGEL 454
Query: 295 KLWNIKENKPVHSFNEFRDYVMDVQWSP 322
+LW++ F V+ V +S
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 47.6 bits (114), Expect = 3e-06
Identities = 51/268 (19%), Positives = 89/268 (33%), Gaps = 40/268 (14%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
I +++ V+ +T L+ H PV+ + + L S S DG++ W E
Sbjct: 33 IKIFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE--- 85
Query: 203 SPQETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKA 254
Q A V S+ + P +V DG V +G +
Sbjct: 86 ----NGRWS----QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137
Query: 255 GNVECYEGHEGPV-------VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--- 304
+ + H V + S ++T D VK+W +
Sbjct: 138 PII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 305 -VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP- 359
+ D+V DV WSP + + A+V +W + + T E P
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 360 ALSRVTWTPNGTQLCVGDEKGAITMFDV 387
L R +W+ +G L + +T++
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKE 283
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 47.8 bits (114), Expect = 3e-06
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKEN---KPVHSFNEFRDY 314
H+ V +D++ + +T S D + ++ + + K
Sbjct: 52 SDHDKIVTC---------VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA 102
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT---WTPNGT 371
V+WSP N FA A + + + + + + S + W PN
Sbjct: 103 ATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR--STILSLDWHPNNV 159
Query: 372 QLCVG 376
L G
Sbjct: 160 LLAAG 164
Score = 47.0 bits (112), Expect = 5e-06
Identities = 42/330 (12%), Positives = 85/330 (25%), Gaps = 75/330 (22%)
Query: 109 TTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166
T + P F N + T + Q+ L++ H S H
Sbjct: 2 ATSQVLHILPKPSYEHAF---NSQRTEFVTTTATNQVELYE--QDGNGWKHARTFS--DH 54
Query: 167 THPVFCMSVIGTQNAHNLISISNDGRL---CS-------WSLEMLSSPQETRDLQYNNKQ 216
V C + + CS + + ++T L N+
Sbjct: 55 DKIVTC------------VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR- 101
Query: 217 TKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSSH 273
A + + P + + F VG + + + + ++
Sbjct: 102 ----AATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS---- 151
Query: 274 RAQGHIDFS---HLYLTSSYDWSVKLWNIKENKP-----------------VHSFNEFRD 313
+D+ L D + + V +
Sbjct: 152 -----LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206
Query: 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA--PALSRVTWTPNGT 371
+V V +SP + A V + + + P V+ + P S + W
Sbjct: 207 WVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS-LLWANESA 264
Query: 372 QLCVGDEKGAITMFDVGEVGIACLKFITSG 401
+ G + + E G A + + +G
Sbjct: 265 IVAAGYN-YSPILLQGNESGWAHTRDLDAG 293
Score = 36.3 bits (84), Expect = 0.014
Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 9/199 (4%)
Query: 101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160
+W ++ T E+ V + F+ L G + + + ++ P
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALIT 246
Query: 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220
+ P+ + +++ + S TRDL +T
Sbjct: 247 VK--LSQLPLRSLLWANE---SAIVAAGYNYSPILLQGNE-SGWAHTRDLDAGTSKTSFT 300
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
+ + + + G+ H+ + L + G
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY--AGTPG 358
Query: 281 FSHLYLTSSYDWSVKLWNI 299
+ +S D V LW +
Sbjct: 359 NITAFTSSGTDGRVVLWTL 377
Score = 29.7 bits (67), Expect = 1.7
Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 29/243 (11%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-------QKKTPVHRTPLSVMA--HTH 168
+S +LS + N L G + + V + R P + + +
Sbjct: 146 RSTILSLDWHPNNVLLAAGCAD-RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204
Query: 169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP 228
+ +V + + + L +D + P + L + SL +
Sbjct: 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL----ITVKLSQLPLRSLLWA 260
Query: 229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS 288
+ V + + + + + + + + +
Sbjct: 261 NE--SAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318
Query: 289 SYDWSVKLWNIKEN-------KPVH--SFNEFRDYVMDVQWSPINPALFATVEVAGRVDL 339
+ + + ++K + VH R Y +P N F + GRV L
Sbjct: 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY----AGTPGNITAFTSSGTDGRVVL 374
Query: 340 WNL 342
W L
Sbjct: 375 WTL 377
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 46.5 bits (111), Expect = 8e-06
Identities = 42/285 (14%), Positives = 76/285 (26%), Gaps = 60/285 (21%)
Query: 121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS---VIG 177
LS L L + + R H + + V G
Sbjct: 4 FLSARQTGLEDPLRLR-RAESTRRVLGL----ELNKDRDVER--IHGGGINTLDIEPVEG 56
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLAFPQNDV 232
++S +DG + + LE S + + +V ++ + +D
Sbjct: 57 RY----MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112
Query: 233 NNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----- 282
F D + + E V S
Sbjct: 113 GMFTSSSFDKTLKVWDTNT--------LQTADVFNFEETVYSHH---------MSPVSTK 155
Query: 283 HLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
H + + V+L ++K H R ++ V WSP + AT RV LW+
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 342 LNLDTEVPATSAIVEGAPALSR-------------VTWTPNGTQL 373
+ + T G + + + +T +G L
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Score = 39.5 bits (93), Expect = 0.002
Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 33/237 (13%)
Query: 101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPVHR 158
+W+T +T F F + V S + L+ GT ++ L D K+
Sbjct: 126 VWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL----KSGSCS 179
Query: 159 TPLSVMAHTHPVFCM--SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ 216
L H + + S + L + S D R+ W + S T D K
Sbjct: 180 HILQ--GHRQEILAVSWSPRYD---YILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 217 TKNLA--------VLSLAF-PQNDVNNFVVGCEDGNVYSACR--HGNKAGNVECYEGHEG 265
+ V L F D + + D + R + + N G
Sbjct: 235 QAVESANTAHNGKVNGLCFTS--DGLHLLTVGTDNRM----RLWNSSNGENTLVNYGKVC 288
Query: 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
+ S ++ Y ++ ++ + + + V +
Sbjct: 289 NN-SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344
Score = 38.8 bits (91), Expect = 0.002
Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 49/205 (23%)
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFC--MSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
+WDT + V V+ MS + T++ + + ++ L+
Sbjct: 126 VWDTNTLQ-------TADVFNFEETVYSHHMSPVSTKHCL-VAVGTRGPKVQLCDLK--- 174
Query: 203 SPQETRDLQ-YNNKQTKNLAVLSLAF-PQNDVNNFVV-GCEDG-----NVYSACRHGNKA 254
S + LQ + +L++++ P + + D +V A +
Sbjct: 175 SGSCSHILQGHRQ------EILAVSWSP--RYDYILATASADSRVKLWDVRRA------S 220
Query: 255 GNVECYEGHEGPVVGLSSHRAQGHID------FSH--LYL-TSSYDWSVKLWNIKENKPV 305
G + + H G H F+ L+L T D ++LWN +
Sbjct: 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280
Query: 306 -----HSFNEFRDYVMDVQWSPINP 325
N + + +
Sbjct: 281 LVNYGKVCNNSKKGLKFTVSCGCSS 305
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 46.5 bits (110), Expect = 1e-05
Identities = 53/272 (19%), Positives = 90/272 (33%), Gaps = 40/272 (14%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
I +++ V+ +T L+ H PV+ + + L S S DG++ W E
Sbjct: 33 IKIFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--- 85
Query: 203 SPQETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKA 254
Q A V S+ + P +V DG V +G +
Sbjct: 86 ----NGRWS----QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137
Query: 255 GNVECYEGHEGPVVGLS-------SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--- 304
+ + H V S S ++T D VK+W +
Sbjct: 138 PII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 305 -VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP- 359
+ D+V DV WSP + + A+V +W + + T E P
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391
L R +W+ +G L + +T++ G
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 42.2 bits (99), Expect = 3e-04
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 39/228 (17%)
Query: 118 QSPVLSCCFAKFNPY--LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
+ PV +A + ++ +Y G++++W + +V H+ V +
Sbjct: 53 EGPVWRVDWA-HPKFGTILASCSYDGKVLIWK--EENGRWSQIAVHAV--HSASVNSVQW 107
Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-------- 227
+ L+ S+DG++ +E + V S ++
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEF------KENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 228 ----PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHI 279
+ FV G D V + EGH V V S
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-- 219
Query: 280 DFSHLYLTSSYDWSVKLWNI-----KENKPVHSFNEFRDYVMDVQWSP 322
S+L + S D + +W K + +F D + WS
Sbjct: 220 --SYL-ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Score = 31.1 bits (70), Expect = 0.83
Identities = 36/258 (13%), Positives = 75/258 (29%), Gaps = 52/258 (20%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFNPY----LILGGTYSGQIVLWDTRV 150
DG LIW + + + + V S +A P+ L+L + G++ + +
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA---PHEYGPLLLVASSDGKVSVVE--F 130
Query: 151 QKKTPVHRTPLSVMAHTHPVFC-----------MSVIGTQNAHNLISISNDGRLCSWSLE 199
++ + AH V GT+ + ++ D + W
Sbjct: 131 KENGTTSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 200 MLSSP-QETRDLQ-YNNKQTKNLAVLSLAF-PQNDVNNFVV-GCEDGNV---YSACRHGN 252
+ L+ +++ V +A+ P + +++ +D G
Sbjct: 189 SDAQTYVLESTLEGHSD------WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242
Query: 253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSH--LYL-TSSYDWSVKLWN---IKENKPVH 306
+ E + S +S L S D V LW + +P
Sbjct: 243 WKKTLLKEEKFPDVLWRAS---------WSLSGNVLALSGGDNKVTLWKENLEGKWEPAG 293
Query: 307 SFNEFRDY-VMDVQWSPI 323
++ S
Sbjct: 294 EVHQGGGGSGGGGATSKE 311
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 46.0 bits (110), Expect = 1e-05
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 31/213 (14%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVI 176
V S + P L+L + ++ W T +K V H+H V
Sbjct: 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQ--DCT 72
Query: 177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236
T + +S S D L W + + + + + V+S+ + + +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVA---TGETYQRFVGHKS-----DVMSVDIDKK--ASMI 122
Query: 237 V-GCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLS-SHRAQGHIDFSHLYLTSS 289
+ G D + C + GH V + + D + +++
Sbjct: 123 ISGSRDKTIKVWTIKGQC--------LATLLGHNDWVSQVRVVPNEKADDDSVTI-ISAG 173
Query: 290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
D VK WN+ + + F + + SP
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Score = 36.0 bits (84), Expect = 0.018
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH + L+ S + S D + LWN+ K +++ + +D V
Sbjct: 193 IGHNSNINTLT---------ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFS 242
Query: 318 VQWSP 322
+ +SP
Sbjct: 243 LAFSP 247
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 45.7 bits (109), Expect = 1e-05
Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 47/224 (20%)
Query: 118 QSPVLSCCFAKFNP---YLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVF 171
P+ F + L+ S ++ L++ Q + + + + +
Sbjct: 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 77
Query: 172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLA 226
+ + L + G + + + K+ A+ L
Sbjct: 78 --TYDSNTSHPLLAVAGSRGIIRIINPI-------------TMQCIKHYVGHGNAINELK 122
Query: 227 FPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
F D N + +D N+ + EGH V LS D+
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQT----DTLVAIFGGVEGHRDEV--LS-------ADY 169
Query: 282 SH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
++ D S+KLW I + +++ E DY + P
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213
Score = 45.7 bits (109), Expect = 2e-05
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYL---TSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+ + + + D + + + +++ N + + + + + +
Sbjct: 61 QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE 120
Query: 318 VQWSPINPALFATVEVAGRVD----LWNLNLDTEVPATSAIVEG--APALSRVTWTPNGT 371
+++ P +P L + D LWN+ DT V A VEG LS + G
Sbjct: 121 LKFHPRDPNLLLS----VSKDHALRLWNIQTDTLV-AIFGGVEGHRDEVLS-ADYDLLGE 174
Query: 372 QL 373
++
Sbjct: 175 KI 176
Score = 32.2 bits (74), Expect = 0.24
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 37/183 (20%)
Query: 129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS 188
+NP S +I D + H + V C+ +G ++S S
Sbjct: 205 YNPNKTNRPFISQKIHFPDFSTRD------------IHRNYVDCVRWLGDL----ILSKS 248
Query: 189 NDGRLCSW---SLEMLSSPQETRDLQYNNKQTKNL---AVLSLAFPQNDVNNFVV-GCED 241
+ + W +E + + + + + F + + G +
Sbjct: 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308
Query: 242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI---DFSH---LYLTSSYDWSVK 295
G + ++E + H+ L+ H+ I FS + + D S+
Sbjct: 309 GKL--------YVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 360
Query: 296 LWN 298
W+
Sbjct: 361 RWD 363
Score = 31.1 bits (71), Expect = 0.59
Identities = 7/72 (9%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 260 YEGHEGPV--VGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSF------NE 310
++ + + + S +DF L + + +W+++ P + ++
Sbjct: 281 FDYSQCDIWYMRFS-------MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333
Query: 311 FRDYVMDVQWSP 322
+ +S
Sbjct: 334 CGAAIRQTSFSR 345
Score = 28.8 bits (65), Expect = 2.9
Identities = 13/133 (9%), Positives = 44/133 (33%), Gaps = 30/133 (22%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKP--------------V 305
+ H V + + + S S + ++ W + + +
Sbjct: 228 DIHRNYV---------DCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278
Query: 306 HSFNEFRDYVMDVQWSPINPA--LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR 363
F+ + + +++S + + A G++ +W+L ++ A + +
Sbjct: 279 GRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337
Query: 364 VT---WTPNGTQL 373
+ ++ + + L
Sbjct: 338 IRQTSFSRDSSIL 350
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 38/157 (24%)
Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225
H V C+ ++ +N +++ S D L W L D
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP---KESSVPDHGEE------------ 246
Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY 285
V + N Y V GH V +S H ++
Sbjct: 247 -----HDYPLVFHTPEENPYF----------VGVLRGHMASVRTVSGH--------GNIV 283
Query: 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
++ SYD ++ +W++ + K ++ + D + +
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Score = 34.5 bits (80), Expect = 0.052
Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
GH V+ + +++ +T + D +++++ K + + V +++
Sbjct: 118 RGHMTSVITCLQF------EDNYV-ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 321 SP 322
+
Sbjct: 171 AH 172
Score = 33.8 bits (78), Expect = 0.10
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
EGH V L I +T S D ++ +W + + V E
Sbjct: 200 EGHNSTVRCLD-------IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE-EHDYPL 251
Query: 318 VQWSP 322
V +P
Sbjct: 252 VFHTP 256
Score = 33.4 bits (77), Expect = 0.14
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
+GH V L S +L S + D S++ W+ + S++ +
Sbjct: 349 QGHTALVGLLR---------LSDKFLVSAAADGSIRGWDANDYSRKFSYHH-TNLSAITT 398
Query: 320 WSP 322
+
Sbjct: 399 FYV 401
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 46.2 bits (110), Expect = 1e-05
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFNEFRDYVMDVQ 319
E H + ++ H + ++ L+ S D +VKLWN + N + +F +VM V
Sbjct: 94 EAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 320 WSPINPALFATVEVAGRVDLWNLN 343
++P +P+ FA+ + V +W+L
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLG 171
Score = 45.1 bits (107), Expect = 3e-05
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
V + E PV RA F + S D+ ++++N + V F D
Sbjct: 48 VRSIQVTETPV------RA---GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98
Query: 314 YVMDVQWSP 322
Y+ + P
Sbjct: 99 YIRSIAVHP 107
Score = 45.1 bits (107), Expect = 3e-05
Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 66/234 (28%)
Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
+L YSG++ +W+ Q V + V PV I +N +I S+D R
Sbjct: 27 WVLTTLYSGRVEIWNYETQ--VEVR--SIQV--TETPVRAGKFIARKN--WIIVGSDDFR 78
Query: 193 LCSWSLEMLS-----------------SPQETR-------------DLQYNNKQTKNL-- 220
+ ++ P + + + N +
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 221 ---AVLSLAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSSH 273
V+ +AF D + F GC D V N G E V
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVN----- 188
Query: 274 RAQGHIDFSHL----YLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
++D+ L Y+ + S D ++K+W+ + V + V + P
Sbjct: 189 ----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 42.8 bits (101), Expect = 2e-04
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
V G IDF LT+ Y V++WN + V S V
Sbjct: 10 SNRSDRVKG---------IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 318 VQWSP 322
++
Sbjct: 61 GKFIA 65
Score = 42.4 bits (100), Expect = 2e-04
Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 36/188 (19%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-IGTQNAHNLISISNDGRLCSWSLEML 201
+ LW+ + + +T H H V M V ++ S D + WSL
Sbjct: 121 VKLWN--WENNWALEQT-FE--GHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSL--- 170
Query: 202 SSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY------SACRHGNKA 254
L ++ V + + P D + +D + +C
Sbjct: 171 GQSTPNFTLTTGQER----GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------ 220
Query: 255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY 314
V EGH V H I ++ S D ++K+WN K + N +
Sbjct: 221 --VATLEGHMSNVSFAVFHPTLPII------ISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Query: 315 VMDVQWSP 322
+ P
Sbjct: 273 SWCIATHP 280
Score = 40.5 bits (95), Expect = 8e-04
Identities = 28/218 (12%), Positives = 52/218 (23%), Gaps = 24/218 (11%)
Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDT----RVQKKTPVHRTPLSVMAHTHPVFCMS 174
+ + + PV + S + S
Sbjct: 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSG--GKNAA--AS 326
Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN----------NKQTKNLAVLS 224
I T + D L + E+ S + L ++ + + L+
Sbjct: 327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386
Query: 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284
V D N Y+ ++ G ++ Y+ + + FS
Sbjct: 387 WRNKAFGKCQDFVWGPDSNSYAL---IDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGA 443
Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
L D V ++ V DV WS
Sbjct: 444 LLGVKSDGFVYFFDWDNGTLVR---RIDVNAKDVIWSD 478
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 45.3 bits (108), Expect = 2e-05
Identities = 0/231 (0%), Positives = 0/231 (0%), Gaps = 56/231 (24%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIV----------LWDTRVQKKTPVHRTPLSVMA-H 166
+ S + T
Sbjct: 108 TPGTFTNQLQ---T--------SFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDS 156
Query: 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226
+ + N L L+ +
Sbjct: 157 PMRYVDIGIP-ANNKGKQSIGCLFWLLARMVLQ---MRGTILPGHKWDVMVDLFFYRDPE 212
Query: 227 FPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
+ E +
Sbjct: 213 EAKEQEEEEAALVAPDYGAVAEY----AAPAADTWG--GEWGTDAAAQPA---------A 257
Query: 282 S---HLYLTSSYDWSVKLWNIKENKPVHSFN-------EFRDYVMDVQWSP 322
++ P +
Sbjct: 258 IPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVP 308
Score = 37.9 bits (89), Expect = 0.004
Identities = 5/66 (7%), Positives = 9/66 (13%), Gaps = 14/66 (21%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS----HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
+ +V I+ Y L +
Sbjct: 63 QLAARVIVA---------IENPQDIIVQ-SARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112
Query: 317 DVQWSP 322
Q
Sbjct: 113 TNQLQT 118
Score = 37.2 bits (87), Expect = 0.008
Identities = 12/251 (4%), Positives = 37/251 (14%), Gaps = 54/251 (21%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
++ L + + Q+ + R +
Sbjct: 48 DGIYII----NLGKTWEKLQ--LAARVIVAIEN--PQDIIVQSARPYGQRAVLKFAQ--- 96
Query: 203 SPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDG-----NVYSACRHGNKAGN 256
+ + + + GN
Sbjct: 97 YTGAHAIAGRHTP-----GTFTNQLQT--SFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
Query: 257 VECYEGHEGPVVGLS-SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR--- 312
C V + +G W + ++ + +++
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGKQ------SIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
Query: 313 --DYVMDVQWSPINPALFATVEVAGRVD----LWNLNLDTEVPAT----SAIVEGAPALS 362
+ D + + A + +
Sbjct: 204 DLFFYRDPEEAKEQEEEEAA----LVAPDYGAVAEYAAPAADTWGGEWGTDAAAQ----- 254
Query: 363 RVTWTPNGTQL 373
P
Sbjct: 255 -PAAIPAQAGA 264
Score = 36.4 bits (85), Expect = 0.014
Identities = 3/55 (5%), Positives = 11/55 (20%), Gaps = 8/55 (14%)
Query: 276 QGHID------FSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
D + + ++ I K ++ ++
Sbjct: 22 MLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Score = 31.8 bits (73), Expect = 0.38
Identities = 0/221 (0%), Positives = 0/221 (0%), Gaps = 31/221 (14%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC----QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ 151
+ + + T + AK + +
Sbjct: 179 FWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAP 238
Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
T + + +
Sbjct: 239 AA---DTWGGE--WGTDAA--AQPAAIPAQAGADWTAAPAPAAGGWDT---AAAPAPGWE 288
Query: 212 --YNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGP 266
Sbjct: 289 QG-- 346
Query: 267 V--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV 305
Sbjct: 347 -------- 379
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 44.4 bits (106), Expect = 4e-05
Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 50/219 (22%)
Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
P S + I R H ++ + H V
Sbjct: 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR-------HARQINTLNHGEVVCA------ 56
Query: 179 QNAHNLISISNDGRL---CS------WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-P 228
++ISN R W + P + + ++ + S P
Sbjct: 57 ------VTISNPTRHVYTGGKGCVKVWDIS---HPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 229 QNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH--L 284
D +VG E + + L+ S
Sbjct: 108 --DGCTLIVGGEASTLSIWDLAAPTPRIKAE--LTSSAPACYALA---------ISPDSK 154
Query: 285 YLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
S D ++ +W++ V F D + S
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Score = 37.1 bits (87), Expect = 0.008
Identities = 34/199 (17%), Positives = 51/199 (25%), Gaps = 66/199 (33%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL--------- 193
I +WD HT C I ISNDG
Sbjct: 165 IAVWDL----HNQTLVRQFQ--GHTDGASC------------IDISNDGTKLWTGGLDNT 206
Query: 194 -CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVYSACRHG 251
SW L ++ + + + + SL + P VG E NV
Sbjct: 207 VRSWDLR---EGRQLQQHDFTS------QIFSLGYCP--TGEWLAVGMESSNV------- 248
Query: 252 NK-----AGNVECYEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENK 303
+ + HE V+ L F++ + S D + W
Sbjct: 249 -EVLHVNKPDKYQLHLHESCVLSLK---------FAYCGKWFVSTGKDNLLNAWRTPYGA 298
Query: 304 PVHSFNEFRDYVMDVQWSP 322
+ E V+ S
Sbjct: 299 SIFQSKE-SSSVLSCDISV 316
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 44.0 bits (105), Expect = 4e-05
Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 48/275 (17%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVI 176
V P +IL + I++W TR + + + L H+H V V+
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVS--DVV 93
Query: 177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236
+ + +S S DG L W L + TR + K VLS+AF + N +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTK-----DVLSVAFSSD--NRQI 143
Query: 237 V-GCEDG-----NVYSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTS 288
V G D N C++ + E H V V S + S+ + S
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQ------DESHSEWVSCVRFSP-------NSSNPIIVS 190
Query: 289 -SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR---VDLWNLNL 344
+D VK+WN+ K + Y+ V SP + +L A+ G+ LW+LN
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCAS---GGKDGQAMLWDLNE 246
Query: 345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379
+ ++G ++ + ++PN LC
Sbjct: 247 GKHL----YTLDGGDIINALCFSPNRYWLCAATGP 277
Score = 31.3 bits (72), Expect = 0.54
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFR---------DYVMDVQWSP 322
+L ++ S+K+W+++ V + + WS
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 44.2 bits (105), Expect = 5e-05
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 261 EGHEGPVVGLS-SHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKP--VHSFNEFRDYVM 316
GHEGPV + +H G I L S SYD V +W + + + V
Sbjct: 52 TGHEGPVWRVDWAHPKFGTI------LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105
Query: 317 DVQWSP 322
VQW+P
Sbjct: 106 SVQWAP 111
Score = 43.1 bits (102), Expect = 1e-04
Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 42/271 (15%)
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
+++ V+ +T L+ H PV+ + + L S S DG++ W E
Sbjct: 37 IFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----- 87
Query: 205 QETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGN 256
Q A V S+ + P +V DG V +G +
Sbjct: 88 --NGRWS----QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141
Query: 257 VECYEGHEG--------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP---- 304
+ + H P G + +T D VK+W +
Sbjct: 142 I--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVL 198
Query: 305 VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP-A 360
+ D+V DV WSP + + A+V +W + + T E P
Sbjct: 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258
Query: 361 LSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391
L R +W+ +G L + +T++ G
Sbjct: 259 LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289
Score = 31.1 bits (71), Expect = 0.55
Identities = 35/256 (13%), Positives = 65/256 (25%), Gaps = 55/256 (21%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFA--KFNPYLILGGTYSGQIV-------- 144
DG + K TT V S +A GT +
Sbjct: 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 145 --LWDTRVQKKTPVHRTPLSVMAHTHPVFCMS-----VIGTQNAHNLISISNDGRLCSWS 197
+W +T V + L H+ V ++ ++ + L S+S D W+
Sbjct: 184 VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSY----LASVSQDRTCIIWT 237
Query: 198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVYSACR--HGNKA 254
+ P + L+ + ++ N + D V N
Sbjct: 238 QDNEQGPWKKTLLKEEKFPD---VLWRASWSL--SGNVLALSGGDNKV----TLWKENLE 288
Query: 255 GNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
G E E H+G + + K ++ + +
Sbjct: 289 GKWEPAGEVHQGGGG------------------SGGGGATSKEFDGPCQNEIDLLFSECN 330
Query: 314 YVMDVQWSPINPALFA 329
+D + F
Sbjct: 331 DEIDNAKLIMKERRFT 346
Score = 29.2 bits (66), Expect = 2.8
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIKEN--KPVHSFNEFRDYV 315
H + H A + L T S D ++K++ ++ K + + V
Sbjct: 8 NAHNELI-----HDAV----LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 58
Query: 316 MDVQWSP 322
V W+
Sbjct: 59 WRVDWAH 65
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 43.8 bits (104), Expect = 6e-05
Identities = 6/70 (8%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 261 EGHEGPVVGLSSHRAQGH------IDFSHL--YLTSSYDWSVKLWNIKENKPVHSFNEFR 312
E E +++ G +++ ++ ++ ++ I E P
Sbjct: 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH 247
Query: 313 DYVMDVQWSP 322
+ ++++
Sbjct: 248 GPISVLEFND 257
Score = 42.3 bits (100), Expect = 2e-04
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH +V S + + ++ S D SV+LW++K+N + +
Sbjct: 286 YGHSQSIVSAS---------WVGDDKV-ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335
Query: 318 VQWSP 322
+ S
Sbjct: 336 GRISQ 340
Score = 41.5 bits (98), Expect = 3e-04
Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 50/205 (24%)
Query: 137 GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW 196
G +G++ LW+ KT L+ H P+ SV ++ ++IS+ + W
Sbjct: 126 GVENGELRLWN-----KTGALLNVLN--FHRAPIV--SVKWNKDGTHIISMDVENVTILW 176
Query: 197 SLEMLSSPQETRDLQYNNKQTKNLA----------VLSLAFPQNDVNNFVVGCEDGNVY- 245
++ S + + ++ + + + + + FV+ G ++
Sbjct: 177 NVI---SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFV 231
Query: 246 -----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLW 297
GH GP+ L F+ L L++S D ++++W
Sbjct: 232 YQITEKTPTG--------KLIGHHGPISVLE---------FNDTNKLLLSASDDGTLRIW 274
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSP 322
+ + F ++ W
Sbjct: 275 HGGNGNSQNCFYGHSQSIVSASWVG 299
Score = 34.6 bits (80), Expect = 0.048
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 12/68 (17%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
H P+V + ++ ++ + LWN+ + F
Sbjct: 146 NFHRAPIVSVK---------WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 318 VQWSPINP 325
+ +
Sbjct: 197 INAENHSG 204
Score = 34.2 bits (79), Expect = 0.073
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 13/66 (19%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPV-HSFNEFRDYVM 316
P+ S Y + D V ++++K+ S RD ++
Sbjct: 327 IVDGVPIFAGR---------ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377
Query: 317 DVQWSP 322
+ P
Sbjct: 378 NPLPIP 383
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 6e-05
Identities = 53/377 (14%), Positives = 98/377 (25%), Gaps = 129/377 (34%)
Query: 41 MTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQH-PELLLA-----SYHRNKEAPNE 94
+ G K+ L C + + + + +++ + PE +L Y + +
Sbjct: 158 VLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 95 PDGV-------------------------CLI-----WNTKFKKTTPEFEFFCQSPVLSC 124
D CL+ N K F C+ + +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTR 273
Query: 125 CFAKFNPYLILGGTYSGQIVLWD-----TRVQKK--------TPVHRTPLSVMAHTHPVF 171
+ L + I L T + K P V+ T+P
Sbjct: 274 FKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNP-R 328
Query: 172 CMSVIGTQNAHNLISISNDGRLCSW--------------SLEMLSSPQETRDLQYNNKQT 217
+S+I L + N W SL +L P E R + +
Sbjct: 329 RLSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVL-EPAEYRKM-F----- 375
Query: 218 KNLAVLSLAFPQN------------------DVNNFVVGCEDGNVYSACRHGNKAGNVEC 259
L+V FP + DV V YS K +
Sbjct: 376 DRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISI 428
Query: 260 YEGHEGPVVGLSSHRAQGH---IDFSHLYLTSSYDWS--VKLWN-----------IKENK 303
+ + + H +D H + ++D + + +K +
Sbjct: 429 PSIYL-ELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 304 PVHSFNEFRDYVMDVQW 320
FR +D ++
Sbjct: 486 HPERMTLFRMVFLDFRF 502
Score = 32.5 bits (73), Expect = 0.29
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 24/162 (14%)
Query: 206 ETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCED--GNVYSA--CRHGNKAGNVECY 260
ET + QY K L+V AF N D + +D ++ S H + +
Sbjct: 10 ETGEHQYQYKDI--LSVFEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAV-- 61
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
G L S + + F L +Y + + ++ +P + + D +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLY 120
Query: 321 SPINPALFATVEVAGRVDLWNL-----NLDTEVPATSAIVEG 357
+ + +FA V+ L L PA + +++G
Sbjct: 121 N--DNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDG 157
Score = 27.9 bits (61), Expect = 7.2
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 32/96 (33%)
Query: 18 LQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVT----YMDW 73
L W + + D+ + K S L EK K ++ Y++
Sbjct: 392 LSLIWFDV-------IKSDVMVVVNKLHKYS--LV-------EKQPKESTISIPSIYLEL 435
Query: 74 STQ-------HPELL-----LASYHRNKEAPNEPDG 97
+ H ++ ++ + P D
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 43.1 bits (102), Expect = 1e-04
Identities = 34/287 (11%), Positives = 79/287 (27%), Gaps = 49/287 (17%)
Query: 143 IVLWD--TRVQKKTPVHRTPLSVMA-HTHPVFCMS----VIGTQNAHNLISISNDGRLCS 195
+ LW+ ++ + L + ++ + +G + L + NDG L
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK----LACLGNDGILRL 138
Query: 196 WSLEMLSSPQETRDLQYNNKQTKNL--------AVLSLAF--PQNDVNNFVVGCEDGNV- 244
+ P + R ++ + L++ + V + +
Sbjct: 139 YDA---LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195
Query: 245 --YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS-------HLYLTSSYDWSVK 295
K GH+ + +S ++ L T D ++
Sbjct: 196 YQRGK---DGKLHVAAKLPGHKSLIRSIS---------WAPSIGRWYQLIATGCKDGRIR 243
Query: 296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV 355
++ I E + E S + + A + +
Sbjct: 244 IFKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302
Query: 356 EG-APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG-IACLKFITS 400
+ + V+W GT L + G + ++ C+ IT+
Sbjct: 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349
Score = 42.7 bits (101), Expect = 1e-04
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 261 EGHEGPVVGLS-SHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEF------- 311
H+ +V + + G I + S SYD +VKLW ++ S +
Sbjct: 54 RAHDSSIVAIDWASPEYGRI------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107
Query: 312 --RDYVMDVQWSP 322
+ + V+++P
Sbjct: 108 DSKGSLYSVKFAP 120
Score = 40.4 bits (95), Expect = 6e-04
Identities = 24/221 (10%), Positives = 57/221 (25%), Gaps = 31/221 (14%)
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
++ AH + + + + S S D + W + P
Sbjct: 37 VFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED----P 90
Query: 205 QETRDLQYNNKQTKNL-----AVLSLAF-PQNDVNNFVVGCEDGNV-----------YSA 247
+ + L ++ S+ F P + DG + S
Sbjct: 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150
Query: 248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--V 305
H LS ++ + S+ + ++ K+ K
Sbjct: 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE---KLAVSALEQAIIYQRGKDGKLHVA 207
Query: 306 HSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLN 343
+ + + W+P + + GR+ ++ +
Sbjct: 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248
Score = 31.1 bits (71), Expect = 0.56
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 287 TSSYDWSVKLWNIKENKPVHSFNE-FR---DYVMDVQWSP 322
T S D +K++ + ++ ++ +R ++ + W+
Sbjct: 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 42.5 bits (101), Expect = 1e-04
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
GH G + I +TSS D + LW+I+ + +F VM +
Sbjct: 140 AGHTGYLSCCRFLD---DNQI------VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 319 QWSP 322
+P
Sbjct: 191 SLAP 194
Score = 41.0 bits (97), Expect = 4e-04
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH G V+ LS + L+++ + D S KLW+++E +F +
Sbjct: 181 TGHTGDVMSLS---------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 318 VQWSP 322
+ + P
Sbjct: 232 ICFFP 236
Score = 38.3 bits (90), Expect = 0.003
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
GH + + + D L L++S D + +W+ VH+ +VM
Sbjct: 52 RGHLAKIYAMHWGT-------DSRLL-LSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 319 QWSP 322
++P
Sbjct: 104 AYAP 107
Score = 37.1 bits (87), Expect = 0.007
Identities = 40/243 (16%), Positives = 75/243 (30%), Gaps = 54/243 (22%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSP-------VLSCCFA---KFNPYLILGGTYSGQIVL 145
D +C I+N K T E + C F + I+ + L
Sbjct: 118 DNICSIYNLK----TREGNVRVSRELAGHTGYLSCCRFLDDNQ-----IVTSSGDTTCAL 168
Query: 146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ 205
WD +T T + HT V MS+ + +S + D W +
Sbjct: 169 WDI----ETGQQTTTFT--GHTGDV--MSLSLAPDTRLFVSGACDASAKLWDVR---EGM 217
Query: 206 ETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEG 262
+ + + ++ F P + N F G +D + +A
Sbjct: 218 CRQTFTGHES-----DINAICFFP--NGNAFATGSDDATCRLFDL-----RADQELMTYS 265
Query: 263 HEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
H+ + G++S + FS L L D++ +W+ + + V +
Sbjct: 266 HDNIICGITS------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 320 WSP 322
+
Sbjct: 320 VTD 322
Score = 30.2 bits (69), Expect = 1.1
Identities = 6/69 (8%), Positives = 18/69 (26%), Gaps = 16/69 (23%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIK----ENKPVHSFNEFRD 313
V+ + ++ Y+ D ++N+K +
Sbjct: 94 PLRSSWVMTCA---------YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 314 YVMDVQWSP 322
Y+ ++
Sbjct: 145 YLSCCRFLD 153
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/265 (10%), Positives = 63/265 (23%), Gaps = 75/265 (28%)
Query: 133 LILGGTYSGQIVLWDT----RVQKKTPVHRTPLSVMAHTHPVFCMSV---IGTQNAHNLI 185
L+ ++SG ++ + +K L H + + +H L+
Sbjct: 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142
Query: 186 SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN--------FVV 237
+ G W + + L ++ V S P +
Sbjct: 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIAT 202
Query: 238 GCEDGNVY----SACRHGNKAGNVECYEGHEGPV-------------------------- 267
G +G V S R + + +
Sbjct: 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 262
Query: 268 -----------------VGLSSHRAQGH------IDFSH--LYLTS-SYDWSVKLWNIKE 301
+S H + F+ L S +D ++ W++K
Sbjct: 263 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
Query: 302 NKPVHSFNEFRDYVMD----VQWSP 322
+ + + N D + +
Sbjct: 323 KERITTLNMHCDDIEIEEDILAVDE 347
Score = 30.1 bits (68), Expect = 1.3
Identities = 21/223 (9%), Positives = 48/223 (21%), Gaps = 60/223 (26%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
+ + S N + + G + +WD K ++H V +
Sbjct: 16 DADIFSVSAC--NSFTVSCS-GDGYLKVWDN---KLLDNENPKDKS--YSHFVHKSGLHH 67
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
+ + + L V + +F D+ + +
Sbjct: 68 VDVLQAIERDAFELCL----------------------------VATTSF-SGDLLFYRI 98
Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW 297
ED + + + H + A SH + + + +W
Sbjct: 99 TREDETKKVIFEKLDLLDSDM--KKHSFWALKWG---ASNDRLLSHRLVATDVKGTTYIW 153
Query: 298 NIKENKPVHSFNEFR------------------DYVMDVQWSP 322
+ + V S
Sbjct: 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196
Score = 29.7 bits (67), Expect = 1.8
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHS 307
+ H+ + +S + + S S D +K+W+ K +
Sbjct: 9 ANAGKAHDADIFSVS---------ACNSFTVSCSGDGYLKVWDNKLLDNENP 51
Score = 29.7 bits (67), Expect = 2.0
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA--LFATVEVAGRVDLW 340
Y + D + K+ K + + + + S +V G +W
Sbjct: 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153
Query: 341 NLN 343
+
Sbjct: 154 KFH 156
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 41.7 bits (99), Expect = 3e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH V+ ++ F + S S D SVK+W++ VH+F + +D V
Sbjct: 245 SGHASWVLNVA---------FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295
Query: 318 VQWSP 322
V+++
Sbjct: 296 VKYNG 300
Score = 40.5 bits (96), Expect = 6e-04
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 41/156 (26%)
Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLSLAFPQN---DVNNFVV 237
H+ S + + + + Q +++ A+ S+A+ N + V
Sbjct: 3 HHHHHSSRENLYFQGTNQ---YGILFKQEQAHDD------AIWSVAWGTNKKENSETVVT 53
Query: 238 GCEDG-----NVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHIDFSH---LYL 286
G D ++ EGH+ VV +D SH +
Sbjct: 54 GSLDDLVKVWKWRD--------ERLDLQWSLEGHQLGVVS---------VDISHTLPIAA 96
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
+SS D ++LW+++ K + S + + +SP
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
EGH P+ L+ FS L +T+S D +K+++++ + + +V++
Sbjct: 203 EGHAMPIRSLT---------FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Query: 318 VQWSP 322
V + P
Sbjct: 254 VAFCP 258
Score = 39.4 bits (93), Expect = 0.001
Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 49/241 (20%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFA---KFNPYLILGGTYSGQIVLWDTRV 150
+ + + F+ + S + K N ++ G+ + +W R
Sbjct: 11 ENLYFQGTNQ---YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD 67
Query: 151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL 210
++ L H V + + + S S D + W LE + ++ + +
Sbjct: 68 ERLDLQW--SLE--GHQLGVVSVDI--SHTLPIAASSSLDAHIRLWDLE---NGKQIKSI 118
Query: 211 QYNNKQTKNLAVLSLAFPQNDVNNFVV-GCEDG-----NVYSACRHGNKAGNVECYEGHE 264
+LAF + + ++ G G V S G K +
Sbjct: 119 DAGPV-----DAWTLAFSPD--SQYLATGTHVGKVNIFGVES----GKK---EYSLDTRG 164
Query: 265 GPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
++ ++ +S YL S + D + +++I K +H+ + + +S
Sbjct: 165 KFILSIA---------YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 322 P 322
P
Sbjct: 216 P 216
Score = 39.0 bits (92), Expect = 0.002
Identities = 20/206 (9%), Positives = 59/206 (28%), Gaps = 49/206 (23%)
Query: 132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM--SVIGTQNAHNLISISN 189
+ + + + AH ++ + +N+ +++ S
Sbjct: 3 HHHHHSSRENLYFQGTNQ----YGILFKQEQ--AHDDAIWSVAWGTNKKENSETVVTGSL 56
Query: 190 DGRLCSWSLEMLSSPQETRDLQYNNKQT---KNLAVLSLAF-PQNDVNNFVVGCEDG--- 242
D + W + + + + L V+S+ + D
Sbjct: 57 DDLVKVWKWR-------DE--RLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHIR 105
Query: 243 --NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKL 296
++ + + L+ FS YL + ++ V +
Sbjct: 106 LWDLENGKQIK--------SIDAGPVDAWTLA---------FSPDSQYLATGTHVGKVNI 148
Query: 297 WNIKENKPVHSFNEFRDYVMDVQWSP 322
+ ++ K +S + +++ + +SP
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSP 174
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 41.4 bits (98), Expect = 3e-04
Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 35/202 (17%)
Query: 136 GGTYSGQIVLWDTRV-QKKTPVHRTPLSVMA-------HTHPVFCMSVIGTQNAHNLISI 187
G + L D + Q V VM H + V CM ++ ++S
Sbjct: 25 GKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW--CKDKRRIVSS 82
Query: 188 SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV-- 244
S DG++ W + + + V++ A+ P G D
Sbjct: 83 SQDGKVIVWDSF---TTNKEHAVTMPCT-----WVMACAYAP--SGCAIACGGLDNKCSV 132
Query: 245 --YSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300
+ ++ N A + H + ++ + LT+S D + LW+++
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-------SDMQI-LTASGDGTCALWDVE 184
Query: 301 ENKPVHSFNEFRDYVMDVQWSP 322
+ + SF+ V+ + +P
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAP 206
Score = 39.1 bits (92), Expect = 0.002
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS-----HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV 315
GH V+ L + + +++ D +W+++ + V +F V
Sbjct: 193 HGHGADVLCLD---------LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243
Query: 316 MDVQWSP 322
V++ P
Sbjct: 244 NSVRYYP 250
Score = 38.3 bits (90), Expect = 0.003
Identities = 46/262 (17%), Positives = 80/262 (30%), Gaps = 88/262 (33%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIV----------LWDTRVQKKTPVHRTPLSVMAHT 167
+ V++C +A P SG + ++ K + SV HT
Sbjct: 106 CTWVMACAYA---P--------SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154
Query: 168 HPVFCMSVI--GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225
+ + S Q +++ S DG W +E S Q + + VL L
Sbjct: 155 NYLSACSFTNSDMQ----ILTASGDGTCALWDVE---SGQLLQSFHGHGA-----DVLCL 202
Query: 226 AF-PQNDVNNFVVGCEDG-----NVYS-ACRHGNKAGNVECYEGHEGPVVG--------- 269
P N FV G D ++ S C V+ +E HE V
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQC--------VQAFETHESDVNSVRYYPSGDA 254
Query: 270 --------------------LSSHRAQGHID------FS---HLYLTSSYDWSVKLWNIK 300
++ + + I FS L D+++ +W++
Sbjct: 255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314
Query: 301 ENKPVHSFNEFRDYVMDVQWSP 322
+ V + V ++ SP
Sbjct: 315 KGSRVSILFGHENRVSTLRVSP 336
Score = 31.7 bits (73), Expect = 0.33
Identities = 21/178 (11%), Positives = 51/178 (28%), Gaps = 41/178 (23%)
Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL-QYNNKQTKNL---- 220
S+ A +L + R +E+ + L Q+ K + L
Sbjct: 7 LHENETLASL--KSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHG 64
Query: 221 -AVLSLAF-PQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSH 273
VL + + D V +DG + ++ NK V+ +
Sbjct: 65 NKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFT----TNK---EHAVTMPCTWVMACA-- 113
Query: 274 RAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFR------DYVMDVQWSP 322
++ + D ++ + +K + + + +Y+ ++
Sbjct: 114 -------YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 40.9 bits (97), Expect = 5e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
GH V V S + L +SS D +K+W + K + + + + DV
Sbjct: 20 AGHTKAVSSVKFSP-------NGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 319 QWSP 322
WS
Sbjct: 72 AWSS 75
Score = 39.7 bits (94), Expect = 0.001
Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 46/217 (21%)
Query: 118 QSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
+ V C F NP LI+ G++ + +WD V+ + L AH+ PV +V
Sbjct: 107 SNYVFCCNF---NPQSNLIVSGSFDESVRIWD--VKTGKCLK--TLP--AHSDPV--SAV 155
Query: 176 IGTQNAHNLISISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDV 232
++ ++S S DG R+ W S Q + L N V + F P +
Sbjct: 156 HFNRDGSLIVSSSYDGLCRI--WDTA---SGQCLKTLI----DDDNPPVSFVKFSP--NG 204
Query: 233 NNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYL 286
+ D + YS + ++ Y GH+ + + G ++
Sbjct: 205 KYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSVTGGK------WI 252
Query: 287 TS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
S S D V +WN++ + V D V+ P
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Score = 37.8 bits (89), Expect = 0.005
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH+ + ++ +S L S S D ++K+W++ K + + +YV
Sbjct: 62 SGHKLGISDVA---------WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 112
Query: 318 VQWSP 322
++P
Sbjct: 113 CNFNP 117
Score = 36.7 bits (86), Expect = 0.010
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+GH V + F+ + S S+D SV++W++K K + + D V
Sbjct: 104 KGHSNYVFCCN---------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 318 VQWSP 322
V ++
Sbjct: 155 VHFNR 159
Score = 34.0 bits (79), Expect = 0.061
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+ PV + FS L ++ D ++KLW+ + K + ++ ++
Sbjct: 189 DDDNPPV---------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 318 VQWSPINP 325
+ +
Sbjct: 240 IFANFSVT 247
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 40.3 bits (95), Expect = 7e-04
Identities = 24/204 (11%), Positives = 57/204 (27%), Gaps = 47/204 (23%)
Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI-----GTQNAHNLISIS 188
+L + + + + V+ ++ V G+ L
Sbjct: 20 VLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSH----LYKAR 75
Query: 189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY-- 245
DG ++ ++ L+ + + F++G +G++
Sbjct: 76 LDGHDFLFNTI---IRDGSKMLKRAD------YTAVDTAKL--QMRRFILGTTEGDIKVL 124
Query: 246 ----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWN 298
+ E + H + L F ++SS D +K+W+
Sbjct: 125 DSNFNLQ--------REIDQAHVSEITKLK---------FFPSGEALISSSQDMQLKIWS 167
Query: 299 IKENKPVHSFNEFRDYVMDVQWSP 322
+K+ + R V D+
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIID 191
Score = 35.3 bits (82), Expect = 0.033
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH 278
+ SL N+ N G E+G + G P+ +
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--LINEGTPINNVY------- 342
Query: 279 IDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
F+ L+++S +D S+KL I + + EF V
Sbjct: 343 --FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386
Score = 32.2 bits (74), Expect = 0.32
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 34/130 (26%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH V ++ L++S D +++LW +H+FN +
Sbjct: 178 IGHRATVTDIA---------IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228
Query: 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD 377
V + L+ +++ + + + G + G
Sbjct: 229 VN----------------SIALFVGTDRQLHEISTSKK------NNLEFGTYGKYVIAGH 266
Query: 378 EKGAITMFDV 387
G IT+ +V
Sbjct: 267 VSGVITVHNV 276
Score = 31.4 bits (72), Expect = 0.44
Identities = 7/82 (8%), Positives = 20/82 (24%), Gaps = 21/82 (25%)
Query: 261 EGHEGPVVGLSS---------HRAQGHID------FS----HLYLTSSYDWSVKLWNIKE 301
E P G++S + F ++ + + + N+
Sbjct: 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFS 278
Query: 302 NKPV-HSFNEFRDYVMDVQWSP 322
+ ++F +
Sbjct: 279 KEQTIQLPSKFTCSCNSLTVDG 300
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 40.2 bits (95), Expect = 8e-04
Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 36/207 (17%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
Q V S F +++ G++ +W L AH V+ V+
Sbjct: 104 QGNVCSLSF---QDGVVISGSWDKTAKVWKEGSLVYN------LQ--AHNASVWDAKVV- 151
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
+ + + ++ S D + W + + + + V LA + +F+
Sbjct: 152 SFSENKFLTASADKTIKLWQND-----KVIKTFSGIHND----VVRHLAVVDD--GHFIS 200
Query: 238 GCEDGNVYSACRHGN-KAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK 295
DG + + + G+ + YEGHE V + G I ++ D +V+
Sbjct: 201 CSNDGLI----KLVDMHTGDVLRTYEGHESFVYCIKLLP-NGDI------VSCGEDRTVR 249
Query: 296 LWNIKENKPVHSFNEFRDYVMDVQWSP 322
+W+ + + V
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCMS 276
Score = 35.6 bits (83), Expect = 0.023
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
+GH+ V + + +D S + + S D +V+LW+ + + ++ V +
Sbjct: 15 KGHDQDVRDVVA------VDDSKV-ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY 67
Query: 321 SP 322
Sbjct: 68 DS 69
Score = 32.1 bits (74), Expect = 0.29
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
GH+G V LS F + S S+D + K+W V++ V D +
Sbjct: 101 IGHQGNVCSLS---------FQDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAK 149
Query: 320 WSPINPALFAT 330
+ F T
Sbjct: 150 VVSFSENKFLT 160
Score = 29.8 bits (68), Expect = 1.7
Identities = 23/212 (10%), Positives = 47/212 (22%), Gaps = 75/212 (35%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
+ V F+ L + I LW KT H V
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG-------IHNDVVRH----- 189
Query: 178 TQNAHNLISISNDGRLCS---------WSLEMLSSPQETRDLQYNNKQTKNL-----AVL 223
+++ +DG S + + V
Sbjct: 190 -------LAVVDDGHFISCSNDGLIKLVDMH-------------TGDVLRTYEGHESFVY 229
Query: 224 SLAF-PQNDVNNFVVGCEDGNVY------SACRHGNKAGNVECYEGHEGPVVGLSSHRAQ 276
+ P D+ V ED V + + + +
Sbjct: 230 CIKLLPNGDI---VSCGEDRTVRIWSKENGSL--------KQVITLPAISIWSVD----- 273
Query: 277 GHIDFSH--LYLTSSYDWSVKLWNIKENKPVH 306
+ S D V++++ ++++
Sbjct: 274 ----CMSNGDIIVGSSDNLVRIFSQEKSRWAS 301
Score = 27.5 bits (62), Expect = 9.2
Identities = 7/72 (9%), Positives = 19/72 (26%), Gaps = 15/72 (20%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVK---LWNIKENKPVHSFNE 310
+G + + + L L D + L+ P+++
Sbjct: 52 GTVVYTGQGFLNSVC---------YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG 102
Query: 311 FRDYVMDVQWSP 322
+ V + +
Sbjct: 103 HQGNVCSLSFQD 114
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 39.9 bits (94), Expect = 0.001
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVM 316
GH+ V G+ F ++ S + D ++++W+ K + + + N +V
Sbjct: 334 LVGHDNWVRGVL---------FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 317 DVQWSP 322
+ +
Sbjct: 385 SLDFHK 390
Score = 39.5 bits (93), Expect = 0.001
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH+ V +S +++S D ++K+W ++ V +F R++V
Sbjct: 189 HGHDHNVSSVS---------IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 318 VQWSP 322
V+ +
Sbjct: 240 VRPNQ 244
Score = 39.5 bits (93), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
GH PV V FS + +++S D ++K+W+ + + D V D+
Sbjct: 105 SGHRSPVTRVIFHP-------VFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 319 QWSP 322
+
Sbjct: 157 SFDH 160
Score = 38.3 bits (90), Expect = 0.003
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+GH V I F H L S S D ++KLW+ + + + + + V
Sbjct: 147 KGHTDSVQD---------ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS 197
Query: 318 VQWSP 322
V P
Sbjct: 198 VSIMP 202
Score = 38.3 bits (90), Expect = 0.003
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
GH V R + + L + S D +V++W + + E R V
Sbjct: 231 TGHREWV------RM---VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 318 VQWSP 322
+ W+P
Sbjct: 282 ISWAP 286
Score = 35.3 bits (82), Expect = 0.034
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 261 EGHEGPV-----------VGLSSHRAQGHIDFSHL--YL-TSSYDWSVKLWNIKENKPVH 306
H V +S +L + S D ++K+W++ +
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 307 SFNEFRDYVMDVQWSP 322
+ ++V V +
Sbjct: 333 TLVGHDNWVRGVLFHS 348
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
V+ L S + +F+ K W + ++ + R V V + P
Sbjct: 65 VMELESKLNEAKEEFTSG-GPLGQKRDPKEWIPR-PPEKYALSGHRSPVTRVIFHP 118
Score = 27.6 bits (62), Expect = 9.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300
HE V L H+ ++ +T S D +VK+W +
Sbjct: 377 NAHEHFVTSLDFHKTAPYV------VTGSVDQTVKVWECR 410
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 38.7 bits (91), Expect = 0.003
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYL-TSSYDWSVKLWNI---KENKPVHSFNEFRDY 314
EGHE V ++ ++ L T S D SV +W + E + V N
Sbjct: 102 EGHENEVKSVA---------WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152
Query: 315 VMDVQWSP 322
V V W P
Sbjct: 153 VKHVVWHP 160
Score = 34.1 bits (79), Expect = 0.066
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSP 322
+ D +++W + + + V V WSP
Sbjct: 33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Score = 31.8 bits (73), Expect = 0.32
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIK--ENKPVHSFNEFRDYV 315
EGH+ V ++ +S YL ++S+D + +W + + V + + V
Sbjct: 58 EGHQRTVRKVA---------WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV 108
Query: 316 MDVQWSP 322
V W+P
Sbjct: 109 KSVAWAP 115
Score = 31.8 bits (73), Expect = 0.35
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 287 TSSYDWSVKLWNIKENKPV---------HSFNEFRDYVMDVQWSPINPALFAT 330
T+ D +++++ N H V V W+P P L A+
Sbjct: 269 TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Score = 31.4 bits (72), Expect = 0.46
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPV--HSFNEFRDYV 315
H V H+ + L ++SYD +VKL+ +E+ V + V
Sbjct: 147 NSHTQDVK---------HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197
Query: 316 MDVQWSP 322
+ + P
Sbjct: 198 WSLAFDP 204
Score = 27.5 bits (62), Expect = 8.3
Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 31/184 (16%)
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
+ L+ ++ V L H V+ ++ + L S S+D + W +
Sbjct: 174 VKLYR--EEEDDWVCCATLE--GHESTVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPG 227
Query: 203 SPQETRDLQYNN--KQTKNL------AVLSLAF-PQNDVNNFVVGCEDGNV-------YS 246
+ Q + K L + +A+ C D + S
Sbjct: 228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ--LTGALATACGDDAIRVFQEDPNS 285
Query: 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPV 305
+ + ++ H V ++ + + + L S S D V W + + +
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL------LASCSDDGEVAFWKYQRPEGL 339
Query: 306 HSFN 309
H +
Sbjct: 340 HHHH 343
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 38.4 bits (90), Expect = 0.003
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVM 316
G V G+ FS + S+D +V L + + V + ++
Sbjct: 198 SSSSCGWVHGVC---------FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248
Query: 317 DVQWSP 322
V +
Sbjct: 249 AVTFIT 254
Score = 35.7 bits (83), Expect = 0.024
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 27/124 (21%)
Query: 270 LSSHRAQGHID------FSH---LYLTSSYDWSVKLWNIKENKP--VHSFNEFRDYVMDV 318
++ H ++ ++ + V ++ NK VH E V V
Sbjct: 1 MAYH--SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV 58
Query: 319 QWSPINPALFATVEVAGRVD----LWNLNLDTEVPATSAIVEG--APALSRVTWTPNGTQ 372
W+P + T D +W L T P + ++ A V W PN +
Sbjct: 59 DWAP-DSNRIVT----CGTDRNAYVWTLKGRTWKP--TLVILRINRAARC-VRWAPNEKK 110
Query: 373 LCVG 376
VG
Sbjct: 111 FAVG 114
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 38.0 bits (89), Expect = 0.004
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
GH V + LS + ++SS+D +++LW+++ F + V V
Sbjct: 73 TGHNHFVSDLALSQ-------ENCFA-ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV 124
Query: 319 QWSP 322
+SP
Sbjct: 125 AFSP 128
Score = 36.8 bits (86), Expect = 0.009
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 12/65 (18%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+ HE V LS S T D + +W+I + +
Sbjct: 210 KAHESNVNHLS---------ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ 260
Query: 318 VQWSP 322
+ ++P
Sbjct: 261 IAFNP 265
Score = 31.4 bits (72), Expect = 0.55
Identities = 6/77 (7%), Positives = 17/77 (22%), Gaps = 24/77 (31%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFR------ 312
+ ++ F+ ++ D VK++N+
Sbjct: 252 FDAGSTINQIA---------FNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302
Query: 313 -------DYVMDVQWSP 322
+ W+
Sbjct: 303 EGQKGKNPQCTSLAWNA 319
Score = 29.1 bits (66), Expect = 2.5
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 33/102 (32%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPV-------HSFNE 310
GH+ V ++ FS + S + +KLWNI HS
Sbjct: 115 VGHQSEVYSVA---------FSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS--- 162
Query: 311 FRDYVMDVQWSPINPALFATVEVAGRV-----D----LWNLN 343
D+V V++SPI + A D +WN N
Sbjct: 163 --DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 37.6 bits (88), Expect = 0.005
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKEN----KPVHSFNEFRDYV 315
+ ++ + FS L T S D +KL ++K + V + +
Sbjct: 11 KLYKEKIWSFD---------FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI 61
Query: 316 MDVQWSP 322
V W P
Sbjct: 62 RSVAWRP 68
Score = 35.3 bits (82), Expect = 0.032
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH----LYLTS-SYDWSVKLWNIKENKPVHS-------- 307
GHEG V F L S S D +V++W +
Sbjct: 194 NGHEGTVWSSD---------FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244
Query: 308 -FNEFRDYVMDVQWSP 322
+ + V +V W
Sbjct: 245 LPDVHKRQVYNVAWGF 260
Score = 32.6 bits (75), Expect = 0.21
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 26/130 (20%)
Query: 265 GPVVGLSSHRAQGHID------FSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEF---- 311
+ H + L S+D +V +W +E+ +
Sbjct: 44 DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103
Query: 312 ---RDYVMDVQWSPINPALFATVEVAGR---VDLWNLNLDTEVPATSAIVEG--APALSR 363
+ V V WS + AT R V +W + E ++++
Sbjct: 104 EGHENEVKGVAWSN-DGYYLAT---CSRDKSVWIWETDESGEEYECISVLQEHSQDVKH- 158
Query: 364 VTWTPNGTQL 373
V W P+ L
Sbjct: 159 VIWHPSEALL 168
Score = 30.6 bits (70), Expect = 0.92
Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 23/115 (20%)
Query: 222 VLSLAF-PQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVEC--YEGHEGPVVGLSSH 273
V S F V G +D + E + H+ V
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN---- 255
Query: 274 RAQGHIDFSH--LYLTSSYDWSVKLWNIK----ENKPVHSFNEFRDYVMDVQWSP 322
+ + L + D + ++ + + + V+W
Sbjct: 256 -----VAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 37.3 bits (87), Expect = 0.007
Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 41/201 (20%)
Query: 125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNL 184
C ++ I+ G I +WD T + L+ HT V C+ +
Sbjct: 138 CLQ-YDDQKIVSGLRDNTIKIWDK----NTLECKRILT--GHTGSVLCLQYDERV----I 186
Query: 185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-- 242
I+ S+D + W + + + L ++ + AVL L F + V +D
Sbjct: 187 ITGSSDSTVRVWDVN---TGEMLNTLIHHCE-----AVLHLRF---NNGMMVTCSKDRSI 235
Query: 243 ---NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWN 298
++ S GH V +DF Y+ S S D ++K+WN
Sbjct: 236 AVWDMAS----PTDITLRRVLVGHRAAV------NV---VDFDDKYIVSASGDRTIKVWN 282
Query: 299 IKENKPVHSFNEFRDYVMDVQ 319
+ V + N + + +Q
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQ 303
Score = 31.9 bits (73), Expect = 0.42
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 30/163 (18%)
Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225
H + C+ ++S S+D + W +E R L+ + + V +
Sbjct: 295 HKRGIACLQYRDRL----VVSGSSDNTIRLWDIE---CGACLRVLEGHEE-----LVRCI 342
Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID----- 280
F D V G DG + K ++ P L H
Sbjct: 343 RF---DNKRIVSGAYDGKI--------KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391
Query: 281 -FSHLYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
F + +SS+D ++ +W+ + + S
Sbjct: 392 QFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 35.7 bits (83), Expect = 0.024
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVM 316
Y GH+ V+ ++ + Y+ S S D V W+ K P+ R+ V+
Sbjct: 306 YIGHKDFVLSVA---------TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 317 DVQWSPINP 325
V + +
Sbjct: 357 SVAVANGSS 365
Score = 34.5 bits (80), Expect = 0.059
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 261 EGHEGPVV---GLSSHRAQGHID------FSH--LYLTS-SYDWSVKLWNIKENKPVHSF 308
L++ + FS +L + + D +++W+I+ K V
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 161
Query: 309 NEFRDYVMDVQWSP 322
+ + + P
Sbjct: 162 QGHEQDIYSLDYFP 175
Score = 33.0 bits (76), Expect = 0.19
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
+GHE + L + L S S D +V++W+++ + + D V
Sbjct: 162 QGHEQDIYSLD---------YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTT 211
Query: 318 VQWSPIN 324
V SP +
Sbjct: 212 VAVSPGD 218
Score = 32.2 bits (74), Expect = 0.25
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 261 EGHEGPVVGLS-SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304
+GH V+ ++ ++ + +++ T S D ++W K+ P
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKYKKIAP 392
Score = 29.5 bits (67), Expect = 2.1
Identities = 10/121 (8%), Positives = 34/121 (28%), Gaps = 19/121 (15%)
Query: 221 AVLSLAF-PQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
+ D + + +Y+ + H V
Sbjct: 17 PIPPFLLDL--DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV---CC-- 69
Query: 275 AQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE 332
+ FS+ YL + + + +++ + + V ++ D + + + + +
Sbjct: 70 ----VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 333 V 333
+
Sbjct: 126 I 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 34.5 bits (79), Expect = 0.059
Identities = 14/113 (12%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 280 DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL 339
+ + L+++ +V ++++K + + + + + PI ++ + ++ + +
Sbjct: 179 EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISV 238
Query: 340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392
+ E+ T G P + + +G +L + + G +GI
Sbjct: 239 IDRKTKLEIRKTD--KIGLPR--GLLLSKDGKELYIAQFSASNQESGGGRLGI 287
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 33.6 bits (76), Expect = 0.12
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 296 LWNIKENKPVHSFNEF------RDYVMDVQ---------WSPINPALFATVEVAGRVDLW 340
L+++KE P+ N+ ++ +++ Q SPI+ A + G V ++
Sbjct: 55 LFHVKE-FPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVF 112
Query: 341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF 397
N + + W P + + VG+E G + F + + +F
Sbjct: 113 KDNKMLTNLDSKGNLSSR-TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF 168
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 32.8 bits (74), Expect = 0.20
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 14/120 (11%)
Query: 280 DFSHLYLTSSYDWSVKLWNIKENKPVHSF-----NEFRDYVMDVQWSPINPALFATVEVA 334
Y T + S+ ++ + + E + SP L
Sbjct: 44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPV 103
Query: 335 GRVDLWNLNLDTEV----PATSAIVEGAPA---LSRVTWTPNGTQLCVGDEKGAITMFDV 387
T V T + + A ++ + W +G++L + + D
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDP 161
Score = 29.0 bits (64), Expect = 2.8
Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 287 TSSYDWSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
++Y + +++ + + + +P F ++ + D
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG---AYNVLESF----D 266
Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
E A+ V + V + +G+ + +G G + +D
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 31.1 bits (70), Expect = 0.63
Identities = 35/310 (11%), Positives = 73/310 (23%), Gaps = 82/310 (26%)
Query: 95 PDGVCL---------IWNTK-FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144
D CL I+N + + Y+ +
Sbjct: 29 QDQSCLILSTLKSFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVKEVVH 84
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
+WD KK V R + PV + I +S + +
Sbjct: 85 IWDD--VKKQDVSR-----IKVDAPVK-----DLFLSREFIVVSYGDVISVFKFGNPWKR 132
Query: 205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE 264
+ L + + + + SA
Sbjct: 133 ITDDI---RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA----IL 185
Query: 265 GPVVGLSSHRAQ-GHIDFSH---LYLTSSYDWS-VKLWNIKENKPVHSFNEFRDYVMDVQ 319
G V + +H + + + T S D + ++++ ++ V F
Sbjct: 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR--------- 236
Query: 320 WSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379
A V + W+ +G++L V +K
Sbjct: 237 -----------------------------GLDRADV------VDMKWSTDGSKLAVVSDK 261
Query: 380 GAITMFDVGE 389
+ +F++
Sbjct: 262 WTLHVFEIFN 271
Score = 28.5 bits (63), Expect = 4.0
Identities = 29/260 (11%), Positives = 65/260 (25%), Gaps = 66/260 (25%)
Query: 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF---------------------------- 126
V IW+ K+ + +PV
Sbjct: 79 VKEVVHIWDDVKKQDVSRIKV--DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136
Query: 127 -------AKFNPYLIL-GGTYSGQIVLWD----------TRVQKKTPVHRTPLSVMAHTH 168
N L+ GQI + + ++ + + + AHT+
Sbjct: 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN 196
Query: 169 PVFCMSVIGTQNAHNLISISNDGRLCS-WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF 227
P+ + + + + + + S DG + + E +E R + V+ + +
Sbjct: 197 PIKMVRL--NRKSDMVATCSQDGTIIRVFKTEDGVLVREFR------RGLDRADVVDMKW 248
Query: 228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR--AQGHIDFSHLY 285
D + V + ++ ++ +G S +
Sbjct: 249 -STDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM-KYFQSEWSLCNFKLSVDKHV 306
Query: 286 L-----TSSYDWSVKLWNIK 300
S V +W
Sbjct: 307 RGCKIAWISESSLVVVWPHT 326
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A
{Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C*
3rrm_C*
Length = 388
Score = 30.8 bits (69), Expect = 0.71
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT 351
+S+ L + E + V SF + V + + +L +
Sbjct: 109 YSLDLEELSEFRTVTSFEK------PVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA 162
Query: 352 SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
+ ++ +QL V + + F
Sbjct: 163 QNVT---------SFDVTNSQLAVLLKDRSFQSF 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 300 KEN-KPVHSFNEFRDYVMDVQWSPINPALF--ATVE 332
K+ K + + + Y D S PAL AT+E
Sbjct: 19 KQALKKLQA--SLKLYADD---SA--PALAIKATME 47
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H
helix, HHH motif, three helix bundle, methanopyrus
kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP:
a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB:
2csd_A
Length = 519
Score = 28.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA 353
V V+ +P+ PAL+ + GRVDL + +D EVP A
Sbjct: 130 VRAVKRNPLQPALYRILVRYGRVDLMPVTVD-EVPPEMA 167
>3lml_A LIN1278 protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, LKR115; 3.30A {Listeria innocua}
Length = 460
Score = 28.6 bits (63), Expect = 3.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 59 DEKWSKNRNVTYMD-----WSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
K+ KN+ +D + + N + P + +GV I +
Sbjct: 346 SSKFRKNKISRILDGINNDTRRNILDAIKERKDANTDIPADENGVQFILS 395
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 28.5 bits (63), Expect = 3.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA 353
V V+ +P+ PAL+ + GRVDL + +D EVP A
Sbjct: 130 VRAVKRNPLQPALYRILVRYGRVDLMPVTVD-EVPPEMA 167
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle
protein; 2.00A {Acanthamoeba castellanii} SCOP:
d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Length = 125
Score = 27.3 bits (60), Expect = 4.6
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233
+++GT + DG + S +P + L + V+
Sbjct: 9 NLVGTGAVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDL--AGVH 66
Query: 234 NFVVGCEDGNVYSACRHGN 252
+ +D ++Y
Sbjct: 67 YVTLRADDRSIYGKKGSSG 85
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 28.3 bits (63), Expect = 5.8
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 12/71 (16%)
Query: 317 DVQWSPINPALFATVE-------VAGRVDLWNLNLDTEVPATSAIV-----EGAPALSRV 364
D P ++ E R L + LD A + V + ++
Sbjct: 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193
Query: 365 TWTPNGTQLCV 375
+P+G Q
Sbjct: 194 RLSPDGRQAVW 204
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 27.9 bits (62), Expect = 6.5
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDT------EVPATSAIVEGAPALSRVTWTP 368
SP + A +E A L ++ E+P+ A++ + + P
Sbjct: 197 FSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 255
Query: 369 NGTQLCVGDEKGAITMFDVGEV 390
+G V +G +F GE
Sbjct: 256 DGRLAVVARREGRSAVFIDGER 277
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 27.7 bits (62), Expect = 7.5
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 336 RVDLWNLNLDTEVPATSAIVEGAPA---LSRVTWTPNGTQLCV 375
V + +L T T + G P L+ ++W+P+ L V
Sbjct: 234 HVTVGIYHLAT--GKTVYLQTGEPKEKFLTNLSWSPDENILYV 274
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 8.6
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 18/73 (24%)
Query: 22 WNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL 81
W EE L +L D S ++W + +W+ + E +
Sbjct: 90 WREEQRKRLQEL----------DAASKVME--------QEWREKAKKDLEEWNQRQSEQV 131
Query: 82 LASYHRNKEAPNE 94
+ N+ A
Sbjct: 132 EKNKINNRIADKA 144
>1kzq_A Major surface antigen P30; SAG1, parasite invasion, MAD, immune
system; 1.70A {Toxoplasma gondii} SCOP: b.6.2.1 b.6.2.1
PDB: 1ynt_F
Length = 289
Score = 27.4 bits (60), Expect = 9.8
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACR 249
T D + L V FP FVVGC G+ +C
Sbjct: 78 EDSWWTGDSASLDTAGIKLTVPIEKFPVTTQT-FVVGCIKGDDAQSCM 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.428
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,119,788
Number of extensions: 347876
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 267
Length of query: 401
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 305
Effective length of database: 4,021,377
Effective search space: 1226519985
Effective search space used: 1226519985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)