RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17342
(401 letters)
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 63.3 bits (152), Expect = 1e-11
Identities = 35/256 (13%), Positives = 82/256 (32%), Gaps = 10/256 (3%)
Query: 51 LSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT 110
+ W M ++ Y + + G + +
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196
Query: 111 PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM-AHTHP 169
+ V + + + I G+ + +WD+ + H
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256
Query: 170 VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL----AVLSL 225
V+ + T++ +++S S D + W+L+ ++ +++ + + VLS+
Sbjct: 257 VYSVVF--TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY 285
A QND + G +D V + +GH V+ ++ +++
Sbjct: 315 ATTQND-EYILSGSKDRGVL--FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 286 LTSSYDWSVKLWNIKE 301
T S D ++W K+
Sbjct: 372 ATGSGDCKARIWKYKK 387
Score = 49.8 bits (117), Expect = 3e-07
Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 11/257 (4%)
Query: 95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
PDG L + + + ++ + L + + R +
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
+ S+ + + + + S D + W E + +
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250
Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC-RHGNKAGNVECYEGHEGPVVGLSSH 273
K+ +V S+ F D + V G D +V ++ N + + V +
Sbjct: 251 TGHKD-SVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308
Query: 274 RAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI-----NP 325
+ + L+ S D V W+ K P+ R+ V+ V +
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368
Query: 326 ALFATVEVAGRVDLWNL 342
+FAT + +W
Sbjct: 369 NVFATGSGDCKARIWKY 385
Score = 45.9 bits (107), Expect = 4e-06
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%)
Query: 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA 127
V + ++ ++ S R+ + N + + T E + +
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316
Query: 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHN---- 183
N IL G+ ++ WD + P+ + H + V ++V +
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKK--SGNPLL----MLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 184 LISISNDGRLCSWSLEML 201
+ S D + W + +
Sbjct: 371 FATGSGDCKARIWKYKKI 388
Score = 44.8 bits (104), Expect = 1e-05
Identities = 32/258 (12%), Positives = 69/258 (26%), Gaps = 9/258 (3%)
Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
L + +L++ + ++ V + HT V C+ ++ +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDV--ELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTT 85
Query: 194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
+ + S D NK +NL S + + + + +
Sbjct: 86 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145
Query: 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
+ G S L S D
Sbjct: 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 205
Query: 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP----ALSRVTWTPN 369
V V SP + A + V +W+ V + E ++ V +T +
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265
Query: 370 GTQLCVGDEKGAITMFDV 387
G + G ++ ++++
Sbjct: 266 GQSVVSGSLDRSVKLWNL 283
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 59.4 bits (142), Expect = 2e-10
Identities = 32/308 (10%), Positives = 80/308 (25%), Gaps = 46/308 (14%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK------------------------K 153
+SPV F ++ I +WD
Sbjct: 17 RSPVTRVIFHPVFSVMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-LCSWSLEMLSSPQETRDLQY 212
+ + + ++ G + + +SI +G + S S + E +
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS 272
T + + + P D D V + H V +S
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISW 193
Query: 273 HRAQGHIDFSH--------------LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
+ S L+ S D ++K+W++ + + ++V V
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 319 QWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378
+ + + +W+ + + ++ + + + G
Sbjct: 254 LFHSGGK-FILSCADDKTLRVWDYKNKRCM---KTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 379 KGAITMFD 386
+ +++
Sbjct: 310 DQTVKVWE 317
Score = 54.4 bits (129), Expect = 7e-09
Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 21/290 (7%)
Query: 63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL 122
S++ + D+ T E L + + + + L+ + T ++F +
Sbjct: 36 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 95
Query: 123 SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNA 181
+ N + IV K +T V H + V Q+
Sbjct: 96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 155
Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQY-----------NNKQTKNLAVLSLAFPQN 230
+ S SND + W + E R+ ++ +
Sbjct: 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 215
Query: 231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY 290
+ G D + + GH+ V G+ H I L+ +
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFI------LSCAD 267
Query: 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
D ++++W+ K + + + N +V + + P T V V +W
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW 316
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 51.7 bits (122), Expect = 5e-08
Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
+ ++ F N N F G +D ++ ++ + +S ++ +
Sbjct: 228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL- 285
Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
L D++ +W+ + + V + + + AT + +W
Sbjct: 286 -----LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339
Query: 341 N 341
N
Sbjct: 340 N 340
Score = 51.7 bits (122), Expect = 6e-08
Identities = 37/270 (13%), Positives = 90/270 (33%), Gaps = 25/270 (9%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
+ + + + + L+ G++++WD+ H P+ V+
Sbjct: 55 LAKIYAMHWGTDSRLLVSAS-QDGKLIIWDSYTTN-----------KVHAIPLRSSWVMT 102
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
A + ++ G S+ L + + + ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLSCCRF 151
Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW 297
++ V S+ ++E + + + L+++ + D S KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
+++E +F + + + P N FAT L++L D E+ S
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270
Query: 358 APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
++ V+++ +G L G + ++D
Sbjct: 271 CG-ITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 44.7 bits (104), Expect = 9e-06
Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA 127
+ + + S L ++ + S F+
Sbjct: 229 INAICFFPNGNAFATGSDDAT---------CRLFDLRADQELMTYSHDNIICGITSVSFS 279
Query: 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI 187
K L+ G +WD + V H + V C+ V T + + +
Sbjct: 280 KSGRLLLAGY-DDFNCNVWDALKADRAGVLA------GHDNRVSCLGV--TDDGMAVATG 330
Query: 188 SNDGRLCSWS 197
S D L W+
Sbjct: 331 SWDSFLKIWN 340
Score = 37.0 bits (84), Expect = 0.003
Identities = 16/130 (12%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY--VMD 317
+ GHE + + + + T S D + +L++++ ++ + +++ +
Sbjct: 222 FTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP-ALSRVTWTPNGTQLCVG 376
V +S + L ++W+ ++ G +S + T +G + G
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 377 DEKGAITMFD 386
+ +++
Sbjct: 331 SWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 17/161 (10%)
Query: 85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV 144
D +W+ + F +S + + CF N G+
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFP-NGNAFATGSDDATCR 251
Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
L+D R ++ + SV +++ L++ +D W
Sbjct: 252 LFDLRADQELMTY------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL---KA 302
Query: 205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY 245
L ++ V L +D G D +
Sbjct: 303 DRAGVLAGHDN-----RVSCLGV-TDDGMAVATGSWDSFLK 337
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 47.0 bits (110), Expect = 2e-06
Identities = 27/319 (8%), Positives = 68/319 (21%), Gaps = 36/319 (11%)
Query: 93 NEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK 152
+ + + + A N + + G I D K
Sbjct: 14 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73
Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212
T ++ ++ + + + + N + + + R +
Sbjct: 74 NTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLND----HYVVKPPRLEVF 127
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK------------------- 253
+ + V + +DG++Y A K
Sbjct: 128 STADGLEAKPVRTFPMPRQVY-LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186
Query: 254 -----AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF 308
+ + + D T+ + ++K K
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 246
Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP 368
+ V R+ + D + V +
Sbjct: 247 FAD-LTELYFTGLRSPKDPNQIYGVLNRLAKY----DLKQRKLIKAANLDHTYYCVAFDK 301
Query: 369 NGTQLCVGDEKGAITMFDV 387
G +L +G + +F+
Sbjct: 302 KGDKLYLGGTFNDLAVFNP 320
Score = 38.2 bits (87), Expect = 0.001
Identities = 10/111 (9%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
+ ++Y ++ + ++ + S + +P N + G +
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 341 NLNLDTE---VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG 388
+L+ +S E ++ +P+G ++
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 45.6 bits (106), Expect = 6e-06
Identities = 20/205 (9%), Positives = 54/205 (26%), Gaps = 18/205 (8%)
Query: 116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
F P+ + K + + + ++ +++ K VH + H V +
Sbjct: 5 FLVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVH----ELKEHNGQVTGVDW 59
Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
+++ +++ D W+L+ + L+ N P
Sbjct: 60 --APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV-----RWAPNEKKFAV 112
Query: 236 VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK 295
G ++ + + + V + S L S D+ +
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTV------LSLDWHPNSVLLAAGSCDFKCR 166
Query: 296 LWNIKENKPVHSFNEFRDYVMDVQW 320
+++ +
Sbjct: 167 IFSAYIKEVEERPAPTPWGSKMPFG 191
Score = 37.5 bits (85), Expect = 0.002
Identities = 26/285 (9%), Positives = 65/285 (22%), Gaps = 12/285 (4%)
Query: 62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV 121
K V + + + + +
Sbjct: 84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 143
Query: 122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA 181
+ N L+ G+ + ++ +++ +
Sbjct: 144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203
Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241
+ + S +G +W + D + + + LA ++ V D
Sbjct: 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263
Query: 242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
+ A + G S F +L +S + S
Sbjct: 264 CFPV--LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA--AGAG 319
Query: 302 NKPVHSFNEFRDYVMDVQWSP---INPALFATVEVAGRVDLWNLN 343
+H + V + + F T + G + +W++
Sbjct: 320 LDSLHK-----NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Score = 32.5 bits (72), Expect = 0.078
Identities = 26/340 (7%), Positives = 78/340 (22%), Gaps = 18/340 (5%)
Query: 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCF 126
++ W+ ++ + + I+ K E V +
Sbjct: 10 ISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59
Query: 127 AKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS 186
A + ++ G +W + + P L + V +
Sbjct: 60 APDSNRIVTCG-TDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEKKFAVGSGSR 117
Query: 187 ISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246
+ + + + + + + LA D + V
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177
Query: 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH 306
+ E S+D +V L + + V
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237
Query: 307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN-----LNLDTEVPATSAIVEGAPAL 361
+ ++ V + + + A + + ++ L+ + +
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
Query: 362 SRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITSG 401
+ G + + + ++ + ++ G
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG 337
Score = 30.6 bits (67), Expect = 0.33
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 20/153 (13%)
Query: 53 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
+ + + + + L+A+ H D +++
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGH---------DCFPVLFTYDSAAGKLS 279
Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC 172
F P S G T + D + + H + V
Sbjct: 280 FGGRLDVPKQSSQR---------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 330
Query: 173 MSVI--GTQNAHNLISISNDGRLCSWSLEMLSS 203
+SV+ G + DG + W + L S
Sbjct: 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
Score = 30.2 bits (66), Expect = 0.45
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV 364
HSF + + W+ + A V ++ + + V V
Sbjct: 2 YHSF--LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTG-V 57
Query: 365 TWTPNGTQLCVGDEKGAITMFD 386
W P+ ++ ++
Sbjct: 58 DWAPDSNRIVTCGTDRNAYVWT 79
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 45.2 bits (105), Expect = 8e-06
Identities = 37/312 (11%), Positives = 77/312 (24%), Gaps = 18/312 (5%)
Query: 68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF--EFFCQSPVLSCC 125
++ + LL+ S+ DG ++ + + + P+L C
Sbjct: 14 ISDIKIIPSKSLLLITSW----------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI 185
F I GT G+I+ D + + + + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 186 SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGCEDGNV 244
D R + + + N T + L N+ + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304
+ G + G + S K + + ++
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV 364
V +++SP T G + WNL ++ S V
Sbjct: 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI----KNFAKFNEDSVV 298
Query: 365 TWTPNGTQLCVG 376
+ LC+
Sbjct: 299 KIACSDNILCLA 310
Score = 35.2 bits (79), Expect = 0.012
Identities = 6/76 (7%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI---KENKPVHSFNEFRD 313
V+ + + + + ++ + L +S+D S+ ++ +N + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLL------LITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57
Query: 314 YVMDVQWSPINPALFA 329
++ +
Sbjct: 58 PLLCCNFIDNTDLQIY 73
Score = 30.6 bits (67), Expect = 0.29
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS 362
+ V +DY+ D++ P + +L G + ++ ++ + + L
Sbjct: 2 QIVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 363 RVTWTPNGTQLCV 375
+ N
Sbjct: 61 CCNFIDNTDLQIY 73
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 44.8 bits (104), Expect = 1e-05
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286
Q D + V G D ++ + GH+ G+ ++ +
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK--------DNILV 231
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+ + D +VK+W+IK + + + + V N T G V LW+L
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291
Query: 347 EVPATSAIVEGA--PALSRVTWTPNGTQLCVGDEKG 380
+ + G + R+ + VG G
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
Score = 44.0 bits (102), Expect = 2e-05
Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 44/303 (14%)
Query: 53 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
+ W+ + H + D +W+ + +
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC 172
+ + ++ G Y + +WD + ++ HT+ V+
Sbjct: 133 LMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLH------TLQGHTNRVYS 182
Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV 232
+ + +++S S D + W +E + Q + N
Sbjct: 183 LQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--------LTSGMELKDN-- 228
Query: 233 NNFVVGCEDGNVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291
V G D V + G ++ H+ V L ++ + +TSS D
Sbjct: 229 -ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--------NFVITSSDD 279
Query: 292 WSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPINPALFATVEVAG----RVDLWNL 342
+VKLW++K + + + V ++ S + A G ++ + +
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDF 338
Query: 343 NLD 345
++D
Sbjct: 339 DVD 341
Score = 40.2 bits (92), Expect = 3e-04
Identities = 27/279 (9%), Positives = 73/279 (26%), Gaps = 16/279 (5%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMS 174
V++C +F I+ G+ + +W K H + +
Sbjct: 16 DDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73
Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ----- 229
+ + + L V + Q
Sbjct: 74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133
Query: 230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TS 288
V + + V E + F +++ +
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 193
Query: 289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV 348
S D S+++W+++ +H+ + ++ + + V +W++ +
Sbjct: 194 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCL 250
Query: 349 PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+ A++ + + N D G + ++D+
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVKLWDL 287
Score = 39.0 bits (89), Expect = 8e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
+GH+ V+ ++ S D ++K+W+ K + + V Q
Sbjct: 12 LKGHDDHVITCLQFCGN-------RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64
Query: 320 WSP 322
Sbjct: 65 MRD 67
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.9 bits (99), Expect = 4e-05
Identities = 26/289 (8%), Positives = 70/289 (24%), Gaps = 27/289 (9%)
Query: 96 DGVCLIWNTKFKKTTPEFEFF-------------CQSPVLSCCFAKFNPYLILGGTYSGQ 142
G L + + T + F + + + ++ G
Sbjct: 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147
Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS----- 197
+W T S + + IS G + +
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV 207
Query: 198 -LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN 256
+ LS+ + + + + N + + + + + + + G
Sbjct: 208 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267
Query: 257 VECYEGHEGPVVGL--------SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF 308
S + D ++ +D ++ W++K + + +
Sbjct: 268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 327
Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
N D + + ++ G D+ L + + E
Sbjct: 328 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376
Score = 37.5 bits (85), Expect = 0.002
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---- 312
+ H+ + +S+ + ++ S D +K+W+ K + ++
Sbjct: 7 ANAGKAHDADIFSVSAC--------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58
Query: 313 --------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV 348
D + ++ L AT +G + + + + E
Sbjct: 59 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102
Score = 29.1 bits (63), Expect = 1.0
Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQ 276
+ S++ + V DG + + N + H+ + + +A
Sbjct: 16 DIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 277 GHIDFSHLYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
F + T+S+ + + I + ++D
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 42.9 bits (99), Expect = 5e-05
Identities = 26/307 (8%), Positives = 71/307 (23%), Gaps = 13/307 (4%)
Query: 91 APNEPDGVCLIWNTKFKKTTPEFEFFCQSP-VLSCCFAKFNPYLILGGTYSGQIVLWDTR 149
++ +T+ P + A S +V D
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Query: 150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD 209
+ + + L + RL E+ + D
Sbjct: 65 TGE---TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 210 LQYN---NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV-ECYEGHEG 265
+ + LA+ ++ + +G + + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP 325
L+ ++ + + + + + ++
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 326 ALFATVEVAGRVDLWNLN-----LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380
F+T + + D E A+ V + V + +G+ + +G G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 381 AITMFDV 387
+ +D
Sbjct: 302 DLAAYDA 308
Score = 30.9 bits (68), Expect = 0.26
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 284 LYLTSSYDWSVKLWNIKENKPVHSF--NEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
L + + + + ++ + M +P +ATV + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 342 LNLDTEV 348
L +
Sbjct: 63 LVTGETL 69
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 41.7 bits (96), Expect = 8e-05
Identities = 21/267 (7%), Positives = 54/267 (20%), Gaps = 22/267 (8%)
Query: 96 DGVCLIWNTK---FKKTTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIVL------ 145
G +W+ K + + + + SC LI+GG S +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 146 ----------WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS 195
+ + ++
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG 255
S + D + + L + + + + N
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 256 NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV 315
+ S + ++++ D + W + E V
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSV 309
Query: 316 MDVQWSPINPALFATVEVAGRVDLWNL 342
+ S + T + ++ +
Sbjct: 310 LSCDISV-DDKYIVTGSGDKKATVYEV 335
Score = 30.9 bits (68), Expect = 0.24
Identities = 25/270 (9%), Positives = 60/270 (22%), Gaps = 26/270 (9%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
V + + ++ GG G + +WD + L + + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGG--KGCVKVWDIS-HPGNKSPVSQLDCLNRDNYIRS----- 102
Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
+ DG E + + + +
Sbjct: 103 -------CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL------TSSAPACYALAI 149
Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW 297
+ +S C GN A + G + + I L + +
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
++F + + + P L +E + L D
Sbjct: 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269
Query: 358 APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+ + + G + + +
Sbjct: 270 S-----LKFAYCGKWFVSTGKDNLLNAWRT 294
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 41.4 bits (95), Expect = 1e-04
Identities = 35/293 (11%), Positives = 86/293 (29%), Gaps = 13/293 (4%)
Query: 53 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
+ +D K +V ST ++ + D +W + + P+
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 133
Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC 172
P++ + ++ + + + ++ + C
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193
Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV 232
+ ++ +I + R S M ++ + T + +
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 253
Query: 233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292
V DG++ + + H + +++ +I L S +
Sbjct: 254 KFLVSAAADGSIRGWDANDYS----RKFSYHHTNLSAITTFYVSDNI------LVSGSEN 303
Query: 293 SVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344
++N++ K VH+ + D + V + L A VE G+ L L+
Sbjct: 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDF 354
Score = 37.6 bits (85), Expect = 0.002
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
GH V+ + F Y+ T + D +++++ K + + V ++
Sbjct: 9 RGHMTSVITC--------LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 320 WSP 322
++
Sbjct: 61 YAH 63
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 39.8 bits (91), Expect = 3e-04
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 11/138 (7%)
Query: 62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV 121
W+ + + + Y D +W+ + +
Sbjct: 163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE 218
Query: 122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV---MAHTHPVFCMSVIGT 178
+F+ I+ G Y G+I +WD L + + H+ VF +
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278
Query: 179 QNAHNLISISNDGRLCSW 196
Q ++S S+D + W
Sbjct: 279 Q----IVSSSHDDTILIW 292
Score = 34.1 bits (76), Expect = 0.023
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
+ C V L ++ D ++K+W+ + V+
Sbjct: 8 IHCRSETSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Query: 317 DVQWSPINPA 326
+Q+
Sbjct: 60 CLQYDERVII 69
Score = 32.9 bits (73), Expect = 0.054
Identities = 33/278 (11%), Positives = 84/278 (30%), Gaps = 20/278 (7%)
Query: 125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMSVIGTQNA 181
C ++ I+ G I +WD + + H + + + V +
Sbjct: 20 CLQ-YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR 78
Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241
++ E + + + + +++AV +A P + V+
Sbjct: 79 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 138
Query: 242 GNVYSACRHGNKA------GNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDW 292
V ++ + V + +G L ++ S D
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN 198
Query: 293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS 352
+++LW+I+ + + V+ + + G++ +W+L + A +
Sbjct: 199 TIRLWDIECGACLRV---LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 353 AIVEGAPAL---SRVT-WTPNGTQLCVGDEKGAITMFD 386
+ + RV + Q+ I ++D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 37.9 bits (86), Expect = 0.001
Identities = 22/287 (7%), Positives = 61/287 (21%), Gaps = 13/287 (4%)
Query: 101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160
I++ + K E + + + L +
Sbjct: 70 IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129
Query: 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220
++ + G H + + +E T + ++ +
Sbjct: 130 ITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 188
Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
+L + + N G +
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVS-----KPFVIPLIPGSPNPTKLVPRSMTSE 243
Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
L Y S + + + E + V A + G + +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
Query: 341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
++ + + + + + + + V + G I F +
Sbjct: 304 DVKTRKVTEVKNNL-------TDLRLSADRKTVMVRKDDGKIYTFPL 343
Score = 32.5 bits (72), Expect = 0.079
Identities = 17/261 (6%), Positives = 56/261 (21%), Gaps = 26/261 (9%)
Query: 53 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
+ + S+ +T S + ++ E +++ + +K
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174
Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT-PLSVMAHTHPVF 171
+ + +Y D V + + P +
Sbjct: 175 TTENSHDY---APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231
Query: 172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND 231
++ + S + P
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI-----------------IPLES 274
Query: 232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH---LYLTS 288
G + + + G + Y+ V + ++ + S +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN--LTDLRLSADRKTVMVR 332
Query: 289 SYDWSVKLWNIKENKPVHSFN 309
D + + +++ + +
Sbjct: 333 KDDGKIYTFPLEKPEDERTVE 353
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 37.2 bits (84), Expect = 0.002
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPINPALFATVEVAG 335
S + T D ++++W++ +K V + + + V ++ + G
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 336 RVDLWNL 342
++ + L
Sbjct: 319 TLNFYEL 325
Score = 36.8 bits (83), Expect = 0.003
Identities = 30/281 (10%), Positives = 68/281 (24%), Gaps = 6/281 (2%)
Query: 107 KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166
K+ P ++ + + S + D K PV +
Sbjct: 6 KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF---TGHG 62
Query: 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226
+ V + + + L S G++ W + Q + ++
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286
+ VVG N + E +
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD- 181
Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
+ K + + ++ +V DV++SP + TV ++ ++
Sbjct: 182 --GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239
Query: 347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
+ E + + I ++DV
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 35.3 bits (79), Expect = 0.009
Identities = 24/233 (10%), Positives = 58/233 (24%), Gaps = 8/233 (3%)
Query: 67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF 126
++++ D + + K A DG + + +
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121
Query: 127 AKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS 186
L G +V K + + + +S+ ++
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181
Query: 187 ISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS 246
+ L + + + N + A + + + G D N++
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF- 240
Query: 247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI 299
++ H+ V L ++S D +K WN+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET-------PSTLVSSGADACIKRWNV 286
Score = 33.0 bits (73), Expect = 0.054
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFA 329
+ A L T S D ++ ++++K K + + N +D V ++ W P+
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLV 273
Query: 330 TVEVAGRVDLWN 341
+ + WN
Sbjct: 274 SSGADACIKRWN 285
Score = 32.2 bits (71), Expect = 0.086
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
GH + L+ + L + SYD + W+ HS + ++ +
Sbjct: 10 SGHNKGITALT---------VNPLI-SGSYDGRIMEWSSSSMHQDHS-----NLIVSLDN 54
Query: 321 SP 322
S
Sbjct: 55 SK 56
Score = 26.5 bits (56), Expect = 5.9
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 19/156 (12%)
Query: 165 AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS 224
H + ++V + LIS S DGR+ WS + Q + ++S
Sbjct: 11 GHNKGITALTV------NPLISGSYDGRIMEWSSS-------------SMHQDHSNLIVS 51
Query: 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284
L + + + + V +H + ++G L++ +
Sbjct: 52 LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111
Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW 320
+ S + + ++ + + V
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK 147
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 34.8 bits (78), Expect = 0.016
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 284 LYLTSSYDWSVKLWNIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
+Y+ S + +WN+ + + V + SP L+ V RV +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC 374
+ D +A +L+ ++ G +
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVF 98
Score = 26.3 bits (56), Expect = 7.6
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 235 FVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV 294
++ E ++ + A + G V + D +LY+ ++ V
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRV 61
Query: 295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINP 325
+ I + +F + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDH 92
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.8 bits (75), Expect = 0.026
Identities = 31/288 (10%), Positives = 69/288 (23%), Gaps = 20/288 (6%)
Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR----VQKKTPVHRTPLSVMAHTHPVFCM 173
+ + + L G I WD + VH T ++ + T
Sbjct: 12 NKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233
+V + + + + LSS + + +A +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 234 NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVV--------------GLSSHRAQGHI 279
V + + + + + A +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 280 DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL 339
+ S + F + + AT + V +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
WN+N ++ P +++ V W N T + + I ++V
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297
Score = 32.3 bits (71), Expect = 0.089
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDV 318
GH + LSS + ++ + + W+I F + + +
Sbjct: 8 RYGHNKAITALSSSADGKTL------FSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 319 QW 320
+
Sbjct: 62 KT 63
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 34.1 bits (76), Expect = 0.027
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSF---NEFRDYVMDVQWSPINPALFATVEVAGRVD 338
++S D ++K+WN+ K + D + + W+ ++ G ++
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFIN 306
Query: 339 LWNL 342
N
Sbjct: 307 FVNP 310
Score = 29.5 bits (64), Expect = 0.68
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
D IWN K + + ++ + +G I +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALVSISANGFINFVN 309
Score = 28.7 bits (62), Expect = 1.1
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF 328
+ SV + + E + SP
Sbjct: 31 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Score = 27.2 bits (58), Expect = 3.7
Identities = 13/149 (8%), Positives = 31/149 (20%), Gaps = 9/149 (6%)
Query: 53 FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
F + + + + +
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229
Query: 113 FEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV 170
+ S ++P I + I +W+ K + +
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-------VEKTIPVGTRI 282
Query: 171 FCMSVIGTQNAHNLISISNDGRLCSWSLE 199
+ L+SIS +G + + E
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 33.7 bits (75), Expect = 0.028
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
+ Y+ +S ++ + ++ NK + M SP ++ + V + +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIID 60
Query: 342 LN 343
Sbjct: 61 TA 62
Score = 28.3 bits (61), Expect = 1.6
Identities = 9/87 (10%), Positives = 20/87 (22%), Gaps = 4/87 (4%)
Query: 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---- 282
+ + V E Y G + I +
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256
Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFN 309
+Y+ S+ +V + + N +
Sbjct: 257 KVYVALSFCNTVSVIDTATNTITATMA 283
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 381
Score = 32.2 bits (73), Expect = 0.12
Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV 337
+ F + S ++ +++E + F V ++ + +V +
Sbjct: 91 FVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSAL 150
Query: 338 DLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD 377
DL + ++ L+ V Q
Sbjct: 151 DLRTKSTKQLAQNVTSFDVTNSQLA-VLLKDRSFQSFAWR 189
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 32.1 bits (72), Expect = 0.14
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 20/167 (11%)
Query: 254 AGNVECYEGHEGPVVG-LSSHRAQGHIDFS----HLYLTSSYDWSVKLWNIKENKP---- 304
AG + +G + L + A S +L+ D V + ++ +P
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLF-VIGRDGKVNMIDLWMKEPTTVA 99
Query: 305 -VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV--------PATSAIV 355
+ +E R + A + + +
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 356 EGAPALSRVTWTPNGTQLCV-GDEKGAITMFDVGEVGIACLKFITSG 401
P ++ + + + V E G I + D ++ I++
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206
Score = 29.8 bits (66), Expect = 0.69
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD 386
T+ AG++ L + + +++ A+ + +G L V G + M D
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIK----TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMID 89
Query: 387 V 387
+
Sbjct: 90 L 90
>d2oc6a1 d.198.4.1 (A:1-123) Uncharacterized protein YdhG {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 29.9 bits (67), Expect = 0.23
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 259 CYEGHEGPVVGLSSHRAQ--------GHIDFSHLYLTSSYDWSVKLWNIKENKPV 305
+ H ++G S + + + YD++ +L I N PV
Sbjct: 44 MFTDHGTFIIGFSVSKKHLAVAPEKVTIAHVEDDIVKAGYDYTEQLIRIPWNGPV 98
>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 212
Score = 30.5 bits (69), Expect = 0.27
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG----RVDLWNLNLDTEV 348
LW + ++ P + I P F T+E AG VD+ NLN+ +
Sbjct: 94 LWFMGDDIPHVPNKRGGGLCL---GGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVI 147
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 29.9 bits (66), Expect = 0.54
Identities = 13/228 (5%), Positives = 38/228 (16%), Gaps = 26/228 (11%)
Query: 93 NEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK 152
+ + + G+ + D
Sbjct: 142 LFGSSAAAGLSVPGASDDQLTKSASCFHIHP-----GAAATHYLGSCPASLAASDLAAAP 196
Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212
A + + ++++
Sbjct: 197 AAAGIVGAQCTGAQNCSSQ--AAQANYPGMLVWAVASSILQGDIP--------AAGATMK 246
Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-----AGNVECYEGHEGPV 267
+ F + ++ A N G
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306
Query: 268 VG-LSSHRAQGHIDFS-----HLYLTSSYDWSVKLWNIKENKPVHSFN 309
G +S+ I + Y S+ + +++ ++ S
Sbjct: 307 SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
Score = 27.3 bits (59), Expect = 4.1
Identities = 6/112 (5%), Positives = 14/112 (12%), Gaps = 7/112 (6%)
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR---VD 338
+ L + ++ + P A D
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASD 191
Query: 339 LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390
L + + G +
Sbjct: 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA 243
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain
{Methanopyrus kandleri [TaxId: 2320]}
Length = 291
Score = 28.5 bits (63), Expect = 1.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA 353
V V+ +P+ PAL+ + GRVDL + +D EVP A
Sbjct: 128 VRAVKRNPLQPALYRILVRYGRVDLMPVTVD-EVPPEMA 165
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
{Acanthamoeba castellanii [TaxId: 5755]}
Length = 125
Score = 25.1 bits (55), Expect = 8.7
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233
+++GT + DG + S +P + L + V+
Sbjct: 9 NLVGTGAVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDL--AGVH 66
Query: 234 NFVVGCEDGNVYSACRHGN 252
+ +D ++Y
Sbjct: 67 YVTLRADDRSIYGKKGSSG 85
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 25.8 bits (56), Expect = 9.0
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGR 192
+ ++ N +++ ++GR
Sbjct: 41 EALAGYATEILVRLNEDGSLTVEDNGR 67
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.1 bits (57), Expect = 9.5
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV 348
Y D+ +P L TVE + + NL T +
Sbjct: 473 ARLSTYKRDLALPDRSPILITTVEGQNSISIENLRHKTGL 512
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.428
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,531,585
Number of extensions: 69422
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 84
Length of query: 401
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,213,086
Effective search space: 380909004
Effective search space used: 380909004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)