BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1735
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 15 RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTL------------LLE 61
R KL+ +AD ++W ++GTG + +K + +L+R D TL L+
Sbjct: 80 RAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMR--RDKTLKICANHIIAPEYTLK 137
Query: 62 SKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 109
+ +D ++ I E + + A+ F K D+ E+ + Q
Sbjct: 138 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQ 185
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 15 RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTL------------LLE 61
R KL+ +AD ++W ++GTG + +K + +L+R D TL L+
Sbjct: 30 RAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMR--RDKTLKICANHIIAPEYTLK 87
Query: 62 SKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 109
+ +D ++ I E + + A+ F K D+ E+ + Q
Sbjct: 88 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQ 135
>pdb|3BGH|A Chain A, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
pdb|3BGH|B Chain B, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
Length = 236
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 57 TLLLESKIQTDT----AYQKQQDT-----LIVWSERDNYDLALSFQEKAGC-DEIWEKIC 106
+L+E KI+ + +YQK+ + L + ER Y ++ F++ + +I EK
Sbjct: 39 VVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVS-QFKDASEIPQDIKEKAL 97
Query: 107 QVQGKDPSVEITQDIIEESE---DERFDDMSDG 136
V D +V I +DI+EES+ +E+ DMS G
Sbjct: 98 LVLRMDGNVAILEDIVEESDALSEEKVIDMSSG 130
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 15 RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTL------------LLE 61
R KL+ + D ++W ++GTG + +K + +L+R D TL L+
Sbjct: 29 RAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMR--RDKTLKICANHIIAPEYTLK 86
Query: 62 SKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 109
+ +D ++ I E + + A+ F K D+ E+ + Q
Sbjct: 87 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQ 134
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 117 ITQDIIEESEDERFDDMSD--GSPPIELPPCEINRLEEIKELMQTCLASPVRKEKLAEAI 174
I +DI+ E++D RF D+SD SP + + C +RL ++ E + K A I
Sbjct: 2 IIKDILRENQDFRFRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNI 61
Query: 175 ESEGYIR 181
+G IR
Sbjct: 62 VDDGVIR 68
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 15 RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTL------------LLE 61
R KL+ + D ++W ++GTG + +K + +L+R D TL L+
Sbjct: 29 RAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMR--RDKTLKICANHIIAPEYTLK 86
Query: 62 SKIQTDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 109
+ +D ++ I E + + A+ F K D+ E+ + Q
Sbjct: 87 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQ 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,584,791
Number of Sequences: 62578
Number of extensions: 376456
Number of successful extensions: 974
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 8
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)