Query psy1735
Match_columns 335
No_of_seqs 122 out of 225
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:03:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04802 SMK-1: Component of I 100.0 4.9E-59 1.1E-63 421.3 10.2 157 174-332 1-193 (193)
2 KOG2175|consensus 100.0 2.7E-46 5.8E-51 370.3 12.3 174 161-334 3-211 (458)
3 cd00835 RanBD Ran-binding doma 99.0 2.2E-09 4.8E-14 90.6 11.1 97 14-110 16-122 (122)
4 PF00638 Ran_BP1: RanBP1 domai 98.7 9.4E-08 2E-12 80.2 9.6 97 14-110 15-121 (122)
5 smart00160 RanBD Ran-binding d 98.3 7.7E-06 1.7E-10 70.0 10.4 93 14-106 25-128 (130)
6 PF00568 WH1: WH1 domain; Int 98.2 2.7E-05 5.8E-10 64.7 11.4 95 13-108 13-110 (111)
7 cd00837 EVH1 EVH1 (Enabled, Va 98.1 4.7E-05 1E-09 62.7 11.6 93 14-107 7-102 (104)
8 smart00461 WH1 WASP homology r 96.8 0.014 3.1E-07 48.2 9.7 91 15-107 12-104 (106)
9 cd01207 Ena-Vasp Enabled-VASP- 95.9 0.097 2.1E-06 43.9 9.9 92 14-107 7-105 (111)
10 PF06058 DCP1: Dcp1-like decap 93.9 0.79 1.7E-05 38.9 10.3 94 13-108 26-121 (122)
11 cd01205 WASP WASP-type EVH1 do 91.9 3.7 8E-05 34.1 11.2 91 15-106 11-102 (105)
12 COG5171 YRB1 Ran GTPase-activa 90.6 0.24 5.3E-06 44.6 3.2 98 13-110 94-202 (211)
13 KOG2724|consensus 89.4 0.54 1.2E-05 47.6 4.9 94 13-108 385-485 (487)
14 cd01206 Homer Homer type EVH1 88.1 4.3 9.4E-05 34.0 8.6 95 14-109 9-107 (111)
15 KOG0864|consensus 68.0 2.3 5.1E-05 39.4 0.9 60 13-72 61-123 (215)
16 COG3479 Phenolic acid decarbox 56.8 7.7 0.00017 33.9 2.0 22 77-98 65-86 (175)
17 KOG3671|consensus 50.1 16 0.00035 38.1 3.4 90 16-106 45-136 (569)
18 KOG2085|consensus 48.6 36 0.00078 34.9 5.5 104 148-252 147-264 (457)
19 PF06334 Orthopox_A47: Orthopo 42.2 39 0.00084 30.9 4.2 85 152-236 68-179 (244)
20 PF08926 DUF1908: Domain of un 36.5 1.2E+02 0.0025 29.6 6.7 48 181-239 194-241 (282)
21 PF04499 SAPS: SIT4 phosphatas 23.9 78 0.0017 33.0 3.5 68 162-232 46-125 (475)
22 PF02471 OspE: Borrelia outer 21.6 1.1E+02 0.0024 25.2 3.1 20 16-35 6-25 (108)
No 1
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=4.9e-59 Score=421.29 Aligned_cols=157 Identities=55% Similarity=1.048 Sum_probs=154.3
Q ss_pred HhchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCCcchhhHHhccceeeeeeeecccCCCCCCCc-chhHhhhc
Q psy1735 174 IESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPALTSPK-RHRHYLRT 252 (335)
Q Consensus 174 i~~~~Yi~kL~~lF~~cEd~ed~~~L~~l~~Ivk~il~lNd~~l~E~llsDe~~~~vvG~LEYDp~~~~~k-~HR~fL~~ 252 (335)
|++++||+||+++|++||+++|+++||+||+|+|+|+++|+++|+|.|++|+++|+|||||||||++|++| +||+||++
T Consensus 1 ~~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~ 80 (193)
T PF04802_consen 1 IENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKE 80 (193)
T ss_pred CcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCcceeeecCChhHHHhhhhhhccceeeeeecCCCCCccchhhhhHHHHHHhcHHHHHHHHH-----------------
Q psy1735 253 NSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQ----------------- 315 (335)
Q Consensus 253 ~a~FkeVvpi~d~~l~~kIHqtyRlqYLKDvvL~~~~~lDd~~~s~LnS~I~~N~~eIv~~l~----------------- 315 (335)
+++|||||||+|+++++|||||||+||||||||| |++||+++|+|||+|||||++||++||
T Consensus 81 ~~~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~--r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~ 158 (193)
T PF04802_consen 81 KAKFKEVIPIPDPELLSKIHQTYRLQYLKDVVLP--RFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPS 158 (193)
T ss_pred CCCCceeeecCCHHHHHHHHHHHhHHHHHHHHcc--cccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999 799999999999999999999999999
Q ss_pred ------------------hhccCCchhHHHHhhcc
Q psy1735 316 ------------------FSQNLQPQAKENFYKTR 332 (335)
Q Consensus 316 ------------------~s~~lq~~~r~~~~~~l 332 (335)
+||+|||++|.+||++|
T Consensus 159 ~~~~~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 159 TSDERRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 99999999999999997
No 2
>KOG2175|consensus
Probab=100.00 E-value=2.7e-46 Score=370.26 Aligned_cols=174 Identities=54% Similarity=0.992 Sum_probs=170.5
Q ss_pred cCChhHHHHHHHHHhchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCCcchhhHHhccceeeeeeeecccCCCC
Q psy1735 161 LASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPAL 240 (335)
Q Consensus 161 ~~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEd~ed~~~L~~l~~Ivk~il~lNd~~l~E~llsDe~~~~vvG~LEYDp~~ 240 (335)
++++..|++++.+|.+++||++|+++|+.||++++.++||++|+|+|+|+++|...|+|.||+|+++|+++|||||||++
T Consensus 3 ~~~~~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~ 82 (458)
T KOG2175|consen 3 LQTDQRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAV 82 (458)
T ss_pred CccHHHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHhhhcCCCcceeeecCChhHHHhhhhhhccceeeeeecCCCCCccchhhhhHHHHHHhcHHHHHHHHH-----
Q psy1735 241 TSPKRHRHYLRTNSKFKEVVPISNSDLLGKIHQTYRIQYIQDVVLPTPSLFEDNILSTVSSFIYFNKIEIVTLIQ----- 315 (335)
Q Consensus 241 ~~~k~HR~fL~~~a~FkeVvpi~d~~l~~kIHqtyRlqYLKDvvL~~~~~lDd~~~s~LnS~I~~N~~eIv~~l~----- 315 (335)
|++|+||+|+..+++|||||||.||.++.|||||||+|||||+|||+|+++|+++++++||+||+|+++||++||
T Consensus 83 ~~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~ 162 (458)
T KOG2175|consen 83 PQSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKF 162 (458)
T ss_pred CChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------hhccCCchhHHHHhhcccc
Q psy1735 316 ------------------------------FSQNLQPQAKENFYKTRDV 334 (335)
Q Consensus 316 ------------------------------~s~~lq~~~r~~~~~~l~~ 334 (335)
|+++||++.|++||+||+.
T Consensus 163 l~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~ 211 (458)
T KOG2175|consen 163 LIELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVN 211 (458)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Confidence 9999999999999999973
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=99.04 E-value=2.2e-09 Score=90.55 Aligned_cols=97 Identities=26% Similarity=0.437 Sum_probs=84.9
Q ss_pred CcEEEEEeCCC-CCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceec--cEEEEEecCCC-----
Q psy1735 14 RRVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWSERDN----- 85 (335)
Q Consensus 14 ~RVKvY~L~~~-~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQq--eTlIvW~e~~~----- 85 (335)
.|+|||.+.++ +.|.++|+|.+......+.+...|++|.+..+.++|++.|.++-.|+.++ +.-++|+-.+.
T Consensus 16 ~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~ 95 (122)
T cd00835 16 VRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEP 95 (122)
T ss_pred EEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCC
Confidence 58999999753 79999999999888777678899999999999999999999999999999 88999963222
Q ss_pred --CceeeeccCccchHHHHHHHHHHhc
Q psy1735 86 --YDLALSFQEKAGCDEIWEKICQVQG 110 (335)
Q Consensus 86 --~dlALSFQe~~GC~~iW~~I~~vQ~ 110 (335)
.-++|.|..++.|+++++.|.++|.
T Consensus 96 ~~~~~~lrfk~~~~a~~f~~~~~~~~~ 122 (122)
T cd00835 96 KPETFAIRFKTEEIADEFKEAIEEAKK 122 (122)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHhhC
Confidence 3489999999999999999988773
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=98.71 E-value=9.4e-08 Score=80.20 Aligned_cols=97 Identities=22% Similarity=0.494 Sum_probs=78.3
Q ss_pred CcEEEEEeCC-CCCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceec--cEEEEEe-----cCC-
Q psy1735 14 RRVKLYALNA-DRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWS-----ERD- 84 (335)
Q Consensus 14 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQq--eTlIvW~-----e~~- 84 (335)
.|+|+|.+.. ++.|.++|+|.+......+.+...|++|.+..+.++|+++|.++-.|+..+ +.-++|+ |.+
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSS
T ss_pred EEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCC
Confidence 6899999864 579999999999888776667899999999999999999999999998766 4578883 222
Q ss_pred -CCceeeeccCccchHHHHHHHHHHhc
Q psy1735 85 -NYDLALSFQEKAGCDEIWEKICQVQG 110 (335)
Q Consensus 85 -~~dlALSFQe~~GC~~iW~~I~~vQ~ 110 (335)
-.-+++.|.+++-++++...|.+.|.
T Consensus 95 ~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 95 KPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 25679999999999999999988774
No 5
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=98.28 E-value=7.7e-06 Score=70.02 Aligned_cols=93 Identities=16% Similarity=0.337 Sum_probs=76.2
Q ss_pred CcEEEEEeCC-CCCceeeceEEEEEEEecCC-CceEEEEEecCCCCeeEEeeecCCcccceecc--EEEEEecCC-----
Q psy1735 14 RRVKLYALNA-DRQWDDKGTGHVSSIYVEKH-KGMSLLVRAEADGTLLLESKIQTDTAYQKQQD--TLIVWSERD----- 84 (335)
Q Consensus 14 ~RVKvY~L~~-~~~W~D~GTG~~s~~~~e~~-~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqe--TlIvW~e~~----- 84 (335)
.|+|+|++.. ++.|.++|+|.+-....... +...|+.|.+..+.++|++.|.++-.|+.... ...+|+-.+
T Consensus 25 ~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~ 104 (130)
T smart00160 25 ARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDI 104 (130)
T ss_pred EEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCC
Confidence 6999999974 47999999999877665544 67899999999999999999999999987653 566784221
Q ss_pred --CCceeeeccCccchHHHHHHHH
Q psy1735 85 --NYDLALSFQEKAGCDEIWEKIC 106 (335)
Q Consensus 85 --~~dlALSFQe~~GC~~iW~~I~ 106 (335)
-.-+++-|-.++.++.+++.|.
T Consensus 105 ~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 105 PKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred CceEEEEEEeCCHHHHHHHHHHHH
Confidence 2448999999999999988774
No 6
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.18 E-value=2.7e-05 Score=64.71 Aligned_cols=95 Identities=20% Similarity=0.388 Sum_probs=78.9
Q ss_pred CCcEEEEEeCC--CCCcee-eceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCcee
Q psy1735 13 RRRVKLYALNA--DRQWDD-KGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLA 89 (335)
Q Consensus 13 ~~RVKvY~L~~--~~~W~D-~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlA 89 (335)
.-+|.||..++ +++|.- .|+|-++...+...+...|.+..-.+++++++..|.++-.|+++..+..+|.+.+. -++
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~~-~~G 91 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDDC-VYG 91 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETTC-EEE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCCe-EEE
Confidence 35789999843 335999 99999988776654555666666669999999999999999999999999998865 889
Q ss_pred eeccCccchHHHHHHHHHH
Q psy1735 90 LSFQEKAGCDEIWEKICQV 108 (335)
Q Consensus 90 LSFQe~~GC~~iW~~I~~v 108 (335)
|+|++.+-+....+.+.+.
T Consensus 92 LnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 92 LNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 7
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.12 E-value=4.7e-05 Score=62.68 Aligned_cols=93 Identities=15% Similarity=0.300 Sum_probs=80.5
Q ss_pred CcEEEEEeCCC-CCceee--ceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceee
Q psy1735 14 RRVKLYALNAD-RQWDDK--GTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLAL 90 (335)
Q Consensus 14 ~RVKvY~L~~~-~~W~D~--GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlAL 90 (335)
-||.||.-+++ +.|.-. |+|.+....+...+..+|.+....+..++++..|..+-.|.+...+..+|.+.+ .-++|
T Consensus 7 ~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~-~~~GL 85 (104)
T cd00837 7 AVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN-CVYGL 85 (104)
T ss_pred EEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC-cEEEE
Confidence 58999998653 899999 899988877665566777778888899999999999999999999999999884 56999
Q ss_pred eccCccchHHHHHHHHH
Q psy1735 91 SFQEKAGCDEIWEKICQ 107 (335)
Q Consensus 91 SFQe~~GC~~iW~~I~~ 107 (335)
+|++.+.+....+.+++
T Consensus 86 ~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 86 NFASEEEAAQFRKKVLE 102 (104)
T ss_pred eeCCHHHHHHHHHHHHh
Confidence 99999999998887764
No 8
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=96.77 E-value=0.014 Score=48.17 Aligned_cols=91 Identities=14% Similarity=0.397 Sum_probs=68.5
Q ss_pred cEEEEEeCCCCCceeeceE-EEEEEEecCCCceEE-EEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceeeec
Q psy1735 15 RVKLYALNADRQWDDKGTG-HVSSIYVEKHKGMSL-LVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSF 92 (335)
Q Consensus 15 RVKvY~L~~~~~W~D~GTG-~~s~~~~e~~~~~~l-~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSF 92 (335)
-|-+|.=.. +.|.-.|+| -+.....-....-.+ +|.......++++..|..+-.|.+.-.+.-+|.+. +.-+.|+|
T Consensus 12 vV~~y~~~~-~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~-~~~~GLnF 89 (106)
T smart00461 12 VVQLYDADT-KKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADD-KCVYGLNF 89 (106)
T ss_pred EEEEEeCCC-CCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeC-CeEEEeec
Confidence 466777644 479999999 444444333333344 33334334899999999999999999999999984 56799999
Q ss_pred cCccchHHHHHHHHH
Q psy1735 93 QEKAGCDEIWEKICQ 107 (335)
Q Consensus 93 Qe~~GC~~iW~~I~~ 107 (335)
++.+.+....+.+++
T Consensus 90 ~se~EA~~F~~~v~~ 104 (106)
T smart00461 90 ASEEEAKKFRKKVLK 104 (106)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999888765
No 9
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=95.87 E-value=0.097 Score=43.89 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=71.2
Q ss_pred CcEEEEEeCC-CCCceeeceE-----EEEEEEecCCCceEEEEEec-CCCCeeEEeeecCCcccceeccEEEEEecCCCC
Q psy1735 14 RRVKLYALNA-DRQWDDKGTG-----HVSSIYVEKHKGMSLLVRAE-ADGTLLLESKIQTDTAYQKQQDTLIVWSERDNY 86 (335)
Q Consensus 14 ~RVKvY~L~~-~~~W~D~GTG-----~~s~~~~e~~~~~~l~V~sE-~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~ 86 (335)
-|+.|..-++ .+.|.--|.| .|+..+.. ..+.+.+|-.. .++.+++++.|.++-.|.+.--+...|.+.+ +
T Consensus 7 ~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~-~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~-~ 84 (111)
T cd01207 7 ARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHP-RNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDAR-Q 84 (111)
T ss_pred EEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcC-CCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeeecCC-e
Confidence 3566666655 4689998885 45554443 45566555543 4789999999999999999999999999885 7
Q ss_pred ceeeeccCccchHHHHHHHHH
Q psy1735 87 DLALSFQEKAGCDEIWEKICQ 107 (335)
Q Consensus 87 dlALSFQe~~GC~~iW~~I~~ 107 (335)
-+.|+|+.++.+...-+.|.+
T Consensus 85 v~GLnF~Se~eA~~F~~~v~~ 105 (111)
T cd01207 85 VYGLNFGSKEDATMFASAMLS 105 (111)
T ss_pred EEeeccCCHHHHHHHHHHHHH
Confidence 999999999999987776654
No 10
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=93.92 E-value=0.79 Score=38.94 Aligned_cols=94 Identities=12% Similarity=0.265 Sum_probs=63.0
Q ss_pred CCcEEEEEeCC-CCCceeeceE-EEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceee
Q psy1735 13 RRRVKLYALNA-DRQWDDKGTG-HVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLAL 90 (335)
Q Consensus 13 ~~RVKvY~L~~-~~~W~D~GTG-~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlAL 90 (335)
.--|=||.++. .+.|+..|.. -....-....+...++|-+-.+.+-+.. .|.++..++.|++ .+.+....+.-+++
T Consensus 26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~-~i~~~~~~e~~~~-~l~~r~~~~~I~Gi 103 (122)
T PF06058_consen 26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVE-PITPDLDFELQDP-YLIYRNDNQEIYGI 103 (122)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEE-EE-SGGGEEEETT-EEEEEETTTEEEEE
T ss_pred CCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceee-ecCCCcEEEEeCC-EEEEEcCCceEEEE
Confidence 34588999874 5799998753 1111112334455666666555444443 4999999998777 56666666688899
Q ss_pred eccCccchHHHHHHHHHH
Q psy1735 91 SFQEKAGCDEIWEKICQV 108 (335)
Q Consensus 91 SFQe~~GC~~iW~~I~~v 108 (335)
-|-+.+-|..|.+.+..+
T Consensus 104 Wf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 104 WFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp EESSHHHHHHHHHHHHHH
T ss_pred EEEeHHHHHHHHHHHHhc
Confidence 999999999999987653
No 11
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=91.92 E-value=3.7 Score=34.15 Aligned_cols=91 Identities=19% Similarity=0.319 Sum_probs=72.8
Q ss_pred cEEEEEeCCC-CCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceeeecc
Q psy1735 15 RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQ 93 (335)
Q Consensus 15 RVKvY~L~~~-~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQ 93 (335)
=|.||.-.++ +.|.-+++|-+....+-..+..+|-+-.-..+.++.+..|-.+-.|+.+.....++.. +..-++|+|-
T Consensus 11 VvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~-d~c~~GL~Fa 89 (105)
T cd01205 11 VVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEG-DDCVVGLNFA 89 (105)
T ss_pred EEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEec-cCcEEEEEEC
Confidence 3789997544 7999999999987766544555664555445899999999999999999999999974 4678899999
Q ss_pred CccchHHHHHHHH
Q psy1735 94 EKAGCDEIWEKIC 106 (335)
Q Consensus 94 e~~GC~~iW~~I~ 106 (335)
+..-+......+.
T Consensus 90 de~EA~~F~k~v~ 102 (105)
T cd01205 90 DETEAAEFRKKVL 102 (105)
T ss_pred CHHHHHHHHHHHH
Confidence 9998888877653
No 12
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=90.63 E-value=0.24 Score=44.57 Aligned_cols=98 Identities=20% Similarity=0.375 Sum_probs=72.3
Q ss_pred CCcEEEEEeCCC-CCceeeceEEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceec--cEEEEEe--------
Q psy1735 13 RRRVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ--DTLIVWS-------- 81 (335)
Q Consensus 13 ~~RVKvY~L~~~-~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQq--eTlIvW~-------- 81 (335)
.-|+|+|...++ ..|.++|||-|.......++-+.|+.+-+.-..+..++-|.++---|--. +.--||.
T Consensus 94 K~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~Pe~kl~PnvgsdrsWvw~~taD~~Eg 173 (211)
T COG5171 94 KARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNVGSDRSWVWMSTADTVEG 173 (211)
T ss_pred hhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCcceeccCCCCcccceEEEeecccccC
Confidence 369999999864 59999999999988887788899999988888877777777765444443 3456663
Q ss_pred cCCCCceeeeccCccchHHHHHHHHHHhc
Q psy1735 82 ERDNYDLALSFQEKAGCDEIWEKICQVQG 110 (335)
Q Consensus 82 e~~~~dlALSFQe~~GC~~iW~~I~~vQ~ 110 (335)
|+.-.-+|+.|-..+...-.=+..-..|.
T Consensus 174 ea~a~tFairF~s~Ena~~FkEefek~qe 202 (211)
T COG5171 174 EAKAQTFAIRFYSEENAKRFKEEFEKGQE 202 (211)
T ss_pred cceeeEEEEeeccHHHHHHHHHHHHHHHH
Confidence 22345679999888877766665555443
No 13
>KOG2724|consensus
Probab=89.36 E-value=0.54 Score=47.64 Aligned_cols=94 Identities=23% Similarity=0.431 Sum_probs=75.9
Q ss_pred CCcEEEEEeCCCCCceeeceEEEEEEEecCCCceEEEEEecCC-CCeeEEeeecCCcccceec--cEEEEEecCC----C
Q psy1735 13 RRRVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEAD-GTLLLESKIQTDTAYQKQQ--DTLIVWSERD----N 85 (335)
Q Consensus 13 ~~RVKvY~L~~~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~-~~~LL~s~I~~~~~YqrQq--eTlIvW~e~~----~ 85 (335)
.+||||+-..+ .+..|+|+|-.......+ +-..|+||...+ |.+||++-+.++-..+||+ .-+|+..-+. -
T Consensus 385 sKkckvfykKd-KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~e~t~p 462 (487)
T KOG2724|consen 385 SKKCKVFYKKD-KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPSESTEP 462 (487)
T ss_pred ccccceEEEec-ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCcccccc
Confidence 47888888864 688999999766665555 567899998765 8999999999999999998 4578886543 3
Q ss_pred CceeeeccCccchHHHHHHHHHH
Q psy1735 86 YDLALSFQEKAGCDEIWEKICQV 108 (335)
Q Consensus 86 ~dlALSFQe~~GC~~iW~~I~~v 108 (335)
.-|-|.|-..+|.+++-+.|.++
T Consensus 463 ~TmLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 463 ATMLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred eeEEEEecccchHHHHHHHHHhh
Confidence 56689999999999999999775
No 14
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=88.10 E-value=4.3 Score=34.02 Aligned_cols=95 Identities=15% Similarity=0.361 Sum_probs=73.3
Q ss_pred CcEEEEEeCCC--CCceeeceEEEEEEEe-cCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCC-CCcee
Q psy1735 14 RRVKLYALNAD--RQWDDKGTGHVSSIYV-EKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERD-NYDLA 89 (335)
Q Consensus 14 ~RVKvY~L~~~--~~W~D~GTG~~s~~~~-e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~-~~dlA 89 (335)
-|+.|+..++. ..|.--|.|-+...+- +...+.+=+|- -.+...++++.|.++-.|-+=-.+.=+|.|+. +.-+-
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~-~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~tVyG 87 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIIS-VGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYG 87 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEE-ecCcEEEEeccccCCcceeecccccccccccccceeee
Confidence 68889998874 3899999986554443 33344444443 34568999999999999999999999999997 79999
Q ss_pred eeccCccchHHHHHHHHHHh
Q psy1735 90 LSFQEKAGCDEIWEKICQVQ 109 (335)
Q Consensus 90 LSFQe~~GC~~iW~~I~~vQ 109 (335)
|+|-.+++-+..=+.+.++-
T Consensus 88 LnF~Sk~ea~~F~~~f~~~~ 107 (111)
T cd01206 88 LGFSSEQQLTKFAEKFQEVK 107 (111)
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 99999998887666655543
No 15
>KOG0864|consensus
Probab=68.03 E-value=2.3 Score=39.45 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=42.8
Q ss_pred CCcE-EEEEeCC-CCCceeeceEEEEEEEecCCCceEEEEEecCC-CCeeEEeeecCCcccce
Q psy1735 13 RRRV-KLYALNA-DRQWDDKGTGHVSSIYVEKHKGMSLLVRAEAD-GTLLLESKIQTDTAYQK 72 (335)
Q Consensus 13 ~~RV-KvY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~l~V~sE~~-~~~LL~s~I~~~~~Yqr 72 (335)
..|+ |+|.+.. ..+|..+|||.|-.....+.+...++-+.... ..++..+.|.+.-.++-
T Consensus 61 ~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~~~~p 123 (215)
T KOG0864|consen 61 DQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSFKLEP 123 (215)
T ss_pred hhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcccccC
Confidence 3565 8888664 46999999999988877766665665555555 56777777777766653
No 16
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.77 E-value=7.7 Score=33.89 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEecCCCCceeeeccCccch
Q psy1735 77 LIVWSERDNYDLALSFQEKAGC 98 (335)
Q Consensus 77 lIvW~e~~~~dlALSFQe~~GC 98 (335)
=+.|+||.|+|.||.|.-.++-
T Consensus 65 kvsWtEPTGTdVaL~f~pne~~ 86 (175)
T COG3479 65 KVSWTEPTGTDVALTFNPNEYV 86 (175)
T ss_pred EEEeeCCCCceEEEEeccccce
Confidence 3789999999999999876653
No 17
>KOG3671|consensus
Probab=50.15 E-value=16 Score=38.11 Aligned_cols=90 Identities=17% Similarity=0.380 Sum_probs=63.7
Q ss_pred EEEEEeCCC-CCceeece-EEEEEEEecCCCceEEEEEecCCCCeeEEeeecCCcccceeccEEEEEecCCCCceeeecc
Q psy1735 16 VKLYALNAD-RQWDDKGT-GHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQDTLIVWSERDNYDLALSFQ 93 (335)
Q Consensus 16 VKvY~L~~~-~~W~D~GT-G~~s~~~~e~~~~~~l~V~sE~~~~~LL~s~I~~~~~YqrQqeTlIvW~e~~~~dlALSFQ 93 (335)
|++|.-..+ +.|.-+|+ |.++.+++-..+..+|-.-.=.++++|-+..+-.+=.|+.-+--+.++ |.+.+-..|+|=
T Consensus 45 VqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r~ffhtF-egddc~aGLnF~ 123 (569)
T KOG3671|consen 45 VQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPRTFFHTF-EGDDCQAGLNFA 123 (569)
T ss_pred HHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecCceeeehHHhhhhceeccCccceeee-ccccceeeeccc
Confidence 778886544 49999999 988777654333333322333455688899999998888866444444 455568899999
Q ss_pred CccchHHHHHHHH
Q psy1735 94 EKAGCDEIWEKIC 106 (335)
Q Consensus 94 e~~GC~~iW~~I~ 106 (335)
+-+-|+++.+.+.
T Consensus 124 ~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 124 SEEEAQKFRKKVQ 136 (569)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887654
No 18
>KOG2085|consensus
Probab=48.61 E-value=36 Score=34.92 Aligned_cols=104 Identities=19% Similarity=0.328 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHhcCChhHHHHHHHHHhchhHHHHHHHHHHHHHhcCCh----hhHHHHHHH---HHHHHhcCCcchhhH
Q psy1735 148 NRLEEIKELMQTCLASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENL----PGLHCLYDI---LKSIFLLNKTQLLDI 220 (335)
Q Consensus 148 ~nL~eI~~~l~~~~~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEd~ed~----~~L~~l~~I---vk~il~lNd~~l~E~ 220 (335)
..|....+++-..+.||...-.+|+-..+..++-||++||+. ||-.-- ..||.+|-= .|..+...-+.||=.
T Consensus 147 phLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~ 225 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLR 225 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhh
Confidence 368888888877777888777888878899999999999953 222222 235555441 122222222233222
Q ss_pred -Hhccce------eeeeeeecccCCCCCCCcchhHhhhc
Q psy1735 221 -LFSDDI------ILDVVGCLEYDPALTSPKRHRHYLRT 252 (335)
Q Consensus 221 -llsDe~------~~~vvG~LEYDp~~~~~k~HR~fL~~ 252 (335)
++.-+. +++++|+..-.-++|-...|.-||.+
T Consensus 226 FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r 264 (457)
T KOG2085|consen 226 FIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR 264 (457)
T ss_pred hcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH
Confidence 222222 56778888887788876689999964
No 19
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=42.16 E-value=39 Score=30.88 Aligned_cols=85 Identities=25% Similarity=0.421 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCChh-HHHHHHH----HHhchhHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q psy1735 152 EIKELMQTCLASPV-RKEKLAE----AIESEGYIRKLVGIFHMCED--------------------LENLPGLHCLYDIL 206 (335)
Q Consensus 152 eI~~~l~~~~~s~~-~re~l~~----~i~~~~Yi~kL~~lF~~cEd--------------------~ed~~~L~~l~~Iv 206 (335)
+|.+++..+.+... .|-++.- .+.++=-++.|++-.+..|. ..+.....-+-+.+
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 55666665433333 4444432 22345556666665544442 22334466778899
Q ss_pred HHHHhcC--CcchhhHHhccceeeeeeeeccc
Q psy1735 207 KSIFLLN--KTQLLDILFSDDIILDVVGCLEY 236 (335)
Q Consensus 207 k~il~lN--d~~l~E~llsDe~~~~vvG~LEY 236 (335)
|++++|| ...|+|+..+.+....-+.|+||
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEY 179 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEY 179 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHH
Confidence 9999999 55889999999998899999999
No 20
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=36.54 E-value=1.2e+02 Score=29.56 Aligned_cols=48 Identities=15% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCCcchhhHHhccceeeeeeeecccCCC
Q psy1735 181 RKLVGIFHMCEDLENLPGLHCLYDILKSIFLLNKTQLLDILFSDDIILDVVGCLEYDPA 239 (335)
Q Consensus 181 ~kL~~lF~~cEd~ed~~~L~~l~~Ivk~il~lNd~~l~E~llsDe~~~~vvG~LEYDp~ 239 (335)
.+|-.|.+.|.+-..-+....+-.+||.|+. +++-+ -.++.|||+||+
T Consensus 194 EnLekLl~ea~erS~~~~~~~~~~lvrklL~---------IisRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 194 ENLEKLLQEAHERSESEEVAFVTQLVRKLLI---------IISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH---------HHSS---------------
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHH---------Hhcch--hhhhhhhccChH
Confidence 4567777888888778889999999999874 23322 245668888887
No 21
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.94 E-value=78 Score=32.96 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHhchhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcC------------CcchhhHHhccceeee
Q psy1735 162 ASPVRKEKLAEAIESEGYIRKLVGIFHMCEDLENLPGLHCLYDILKSIFLLN------------KTQLLDILFSDDIILD 229 (335)
Q Consensus 162 ~s~~~re~l~~~i~~~~Yi~kL~~lF~~cEd~ed~~~L~~l~~Ivk~il~lN------------d~~l~E~llsDe~~~~ 229 (335)
..+..+..+..++.+.+.|.+|++++. ...+.+.-...+.++|.|+... .+.|...|.|.+++..
T Consensus 46 d~~~~~~~ilewL~~q~LI~~Li~~L~---p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~ 122 (475)
T PF04499_consen 46 DKPESPTGILEWLAEQNLIPRLIDLLS---PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEK 122 (475)
T ss_pred CcccchHHHHHHHHHhCHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHH
Confidence 345678889999999999999999996 3344555556778888887762 1567777777777555
Q ss_pred eee
Q psy1735 230 VVG 232 (335)
Q Consensus 230 vvG 232 (335)
+++
T Consensus 123 Ll~ 125 (475)
T PF04499_consen 123 LLD 125 (475)
T ss_pred HHH
Confidence 544
No 22
>PF02471 OspE: Borrelia outer surface protein E; InterPro: IPR003483 This is a family of outer surface proteins (Osp) from the Borrelia spp. spirochete []. The family includes OspE, OspF, and OspEF-related proteins (Erp) []. These proteins are coded for on different circular plasmids in the Borrelia genome.
Probab=21.59 E-value=1.1e+02 Score=25.18 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=12.6
Q ss_pred EEEEEeCCCCCceeeceEEE
Q psy1735 16 VKLYALNADRQWDDKGTGHV 35 (335)
Q Consensus 16 VKvY~L~~~~~W~D~GTG~~ 35 (335)
||+=-=...++|.|-||=.+
T Consensus 6 VkIKnKdn~~nW~dLGtLvv 25 (108)
T PF02471_consen 6 VKIKNKDNSGNWTDLGTLVV 25 (108)
T ss_pred EEEeccCCCCCceeeeeEEE
Confidence 44433334679999998443
Done!