RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1735
         (335 letters)



>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score =  102 bits (257), Expect = 7e-28
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 15  RVKLYALNADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQQ 74
            V+LYA + +  W  K +G    +     +   L +    DG LL E ++  +  Y   +
Sbjct: 17  VVQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPR 76

Query: 75  DTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQGK 111
                +   D   +AL+F  +    +  + +  + G+
Sbjct: 77  GYFHTF-AGDTCQVALNFANEEEAKKFRKAVTDLLGR 112


>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score = 62.3 bits (151), Expect = 7e-13
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 15  RVKLYALN-ADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 73
           RVKL+  +    QW ++G G++  +  E +  + +L+R E    +     I T    +  
Sbjct: 8   RVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPL 67

Query: 74  Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 109
              D   +W   D  D       LA  F+     +E  +K  + Q
Sbjct: 68  SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQ 112


>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 13  RRRVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMS------LLVRAEADGTLLLESKIQ 65
             R  +   +   ++W   GTG  +   V+ +   +      +  + + D  +++   I 
Sbjct: 8   SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIV 67

Query: 66  TDTAYQKQQDTLIVWSERDNYDLALSFQEKAGCDEIWEKICQVQ 109
               Y +       W +       L+F  K    +    +    
Sbjct: 68  RGVKYNQATPNFHQWRD-ARQVWGLNFGSKEDAAQFAAGMASAL 110


>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 15  RVKLYALNAD-RQWDDKGTGHVSSIYVEKH----KGMSLLVRAEADGTLLLESKIQTDTA 69
           + KL+  +   + W ++G G +    +           L++R +    L+L +K+     
Sbjct: 26  QCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQ 85

Query: 70  YQKQQDTLIVWSERDNYD-----LALSFQEKAGCD---EIWEKICQVQGK 111
             K  +  I  +  D  D       +S   K        +  +I  ++ +
Sbjct: 86  IDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSR 135


>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 15  RVKLYALNAD-RQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQKQ 73
           R KL+  + + ++W ++G G+V  +  +    + LL+R E    +     I  D      
Sbjct: 28  RAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPN 87

Query: 74  Q--DTLIVWSERDNYD-------LALSFQEKAGCDEIWEKICQVQ 109
              D   VW   D  D       LA+ F+          K  + Q
Sbjct: 88  AGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ 132


>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 146

 Score = 34.1 bits (78), Expect = 0.007
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 13/108 (12%)

Query: 15  RVKLYAL---NADRQWDDKGTGHVSSIYVEKHKGMSLLVRAEADGTLLLESKIQTDTAYQ 71
           R KL+     N   +W ++GTG V  +  ++   + LL+R +    +     I      +
Sbjct: 31  RAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELK 90

Query: 72  KQ--QDTLIVWSERDNYD--------LALSFQEKAGCDEIWEKICQVQ 109
                D   VW+   ++         LA+ F       +   K  + +
Sbjct: 91  PNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECR 138


>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
           1406]}
          Length = 447

 Score = 26.3 bits (57), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 260 VPISNSDLLGKIHQTYRIQYIQD 282
             I++  + GK+    RI Y+Q 
Sbjct: 354 ACINDEVVNGKVQDDRRISYMQQ 376


>d2fs6a1 b.60.1.2 (A:2-137) Cellular retinoic-acid-binding protein
           (CRABP) {Human (Homo sapiens), CRABP-II [TaxId: 9606]}
          Length = 136

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 82  ERDNYDLALSFQEKAGCDEIWEKICQVQGKDPSVEITQD 120
             +N++      +  G + +  KI       P+VEI Q+
Sbjct: 10  RSENFE---ELLKVLGVNVMLRKIAVAAASKPAVEIKQE 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,642
Number of extensions: 60757
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 14
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)