BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17350
         (528 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WLJ|A Chain A, Human Isg20
          Length = 189

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 367 LDCEMCKTS-NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLA---P 422
           +DCEM     + ++ L R +LV+    V+Y+  ++P   IT+Y T  SG+T   +    P
Sbjct: 10  MDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATP 69

Query: 423 VAT-RLEHVQKILSELLPPDAILVGQSLNCDLHALKM-MHPYVI-DTS---VIFNTTGI- 475
            A  RLE +Q      L    ++VG  L  D  ALK  M  Y I DTS   +++    + 
Sbjct: 70  FAVARLEILQ------LLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123

Query: 476 RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
              +  L++L+   L   IQN   GH S EDA A + L ++
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164


>pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 11/76 (14%)

Query: 386 LVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLP--PDAI 443
           +VDE     Y +L+KP   I+   +  +GIT+ +L    +    ++++L E L    D+I
Sbjct: 44  IVDE-----YHTLIKPSREISRKSSEITGITQEMLENKRS----IEEVLPEFLGFLEDSI 94

Query: 444 LVGQSLNCDLHALKMM 459
           +V  + N D   L++ 
Sbjct: 95  IVAHNANFDYRFLRLW 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,914,598
Number of Sequences: 62578
Number of extensions: 471813
Number of successful extensions: 1069
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 5
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)