BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17350
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 128/204 (62%), Gaps = 9/204 (4%)
Query: 319 TMLLLSALQMIEEDYPIPLRGELSAKFSKYINTKEVYAEVTPTSPLYGLDCEMCKTSNDQ 378
T LL+ +M + Y PL+G L + ++ TK VT SPL+GLDCEMC TS +
Sbjct: 190 TRCLLTKEEM--KTYHFPLQGFLDCE--NFVPTK-CNGSVTDNSPLFGLDCEMCLTSKGR 244
Query: 379 NELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELL 438
ELTR++LV E V + LVKP N I +YLT++SGIT+ +L PV T+L+ VQ+ L LL
Sbjct: 245 -ELTRISLVAEGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRRLKILL 303
Query: 439 PPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQD 498
PPDA+LVG SL+ DL ALKM+HPYVIDTS+++ R + KLK L LG DIQ D
Sbjct: 304 PPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGR--RFKLKFLAKAILGKDIQCPD 361
Query: 499 G-GHCSKEDAIAALRLVKLKLSKG 521
GH + EDA L L + L G
Sbjct: 362 RLGHDATEDARTTLELARYFLKYG 385
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+M+HPYVIDTS+++ R + KLK L LG DIQ D GH + EDA L L +
Sbjct: 322 KMIHPYVIDTSLLYVREQGR--RFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELAR 379
Query: 112 LKLSKG 117
L G
Sbjct: 380 YFLKYG 385
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 108/165 (65%), Gaps = 4/165 (2%)
Query: 358 VTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITR 417
+ SPL+GLDCEMC TS + ELTR++LV E V + LVKP N I +YLT++SGIT+
Sbjct: 222 IADNSPLFGLDCEMCLTSKGR-ELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITK 280
Query: 418 ALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRT 477
+L PV T+L+ VQ+ L LLPPDA+LVG SL+ DL ALKM+HPYVIDTS+++ R
Sbjct: 281 KILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRR 340
Query: 478 HKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVKLKLSKG 521
KLK L LG DIQ D GH + EDA L L + L G
Sbjct: 341 F--KLKFLAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHG 383
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+M+HPYVIDTS+++ R KLK L LG DIQ D GH + EDA L L +
Sbjct: 320 KMIHPYVIDTSLLYVREQGRRF--KLKFLAKVILGKDIQCPDRLGHDATEDARTILELAR 377
Query: 112 LKLSKG 117
L G
Sbjct: 378 YFLKHG 383
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 108/167 (64%), Gaps = 4/167 (2%)
Query: 356 AEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGI 415
+ SPL+GLDCEMC TS + ELTR++LV E V + LVKP N I +YLT++SGI
Sbjct: 220 GSIADNSPLFGLDCEMCLTSKGR-ELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGI 278
Query: 416 TRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGI 475
T+ +L PV T+L+ VQ+ L LLPPDA+LVG SL+ DL ALKM+HPYVIDTS+++
Sbjct: 279 TKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQG 338
Query: 476 RTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVKLKLSKG 521
R KLK L LG DIQ D GH + EDA L L + L G
Sbjct: 339 RRF--KLKFLAKAILGKDIQCPDRLGHDATEDARIILELAQYFLKYG 383
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+M+HPYVIDTS+++ R KLK L LG DIQ D GH + EDA L L +
Sbjct: 320 KMIHPYVIDTSLLYVREQGRRF--KLKFLAKAILGKDIQCPDRLGHDATEDARIILELAQ 377
Query: 112 LKLSKG 117
L G
Sbjct: 378 YFLKYG 383
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 111/165 (67%), Gaps = 4/165 (2%)
Query: 358 VTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITR 417
+T +SPL+GLDCE+C TS + ELTR++LV E + + LVKP I +YLT++SGIT+
Sbjct: 216 ITDSSPLFGLDCEVCLTSMGK-ELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITK 274
Query: 418 ALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRT 477
+L PV T+L+ VQK+L ELLPPDA+LVG L+ DL LK++HPYVIDTS+++ G +
Sbjct: 275 EILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLY--IGKQG 332
Query: 478 HKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVKLKLSKG 521
+ KL L LG DIQ + GH EDA AL LV+ L G
Sbjct: 333 RRFKLTFLAKVILGKDIQCPNKLGHDGIEDARTALELVQYFLKYG 377
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+++HPYVIDTS+++ G + + KL L LG DIQ + GH EDA AL LV+
Sbjct: 314 KIIHPYVIDTSLLY--IGKQGRRFKLTFLAKVILGKDIQCPNKLGHDGIEDARTALELVQ 371
Query: 112 LKLSKG 117
L G
Sbjct: 372 YFLKYG 377
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 15/234 (6%)
Query: 306 SSESKSVEDKFPRTM--------LLLSALQMIEEDYPI---PLRGELSAKFSKYINTKEV 354
S+E K DK R M L+S IE++YP+ ++GE + S ++ +
Sbjct: 207 SNEQKKKRDKETRAMASFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPSGWVASAGD 266
Query: 355 YAEVTPTSP-LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYS 413
+ P +P + +DCEM +T N E+ RVT+VD + V+Y+ VKP +P+T+Y+T YS
Sbjct: 267 F-HSPPINPKILAIDCEMVRTENGL-EIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYS 324
Query: 414 GITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTT 473
GIT L V T L VQ L + + + +L+G SLN DL+ LK HP++IDT+ I+N T
Sbjct: 325 GITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHT 384
Query: 474 GIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVKLKLSKGDLIGL 526
KP LK L + +L +IQ GH S EDA+A + L+KLK+ G GL
Sbjct: 385 RGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPAFGL 438
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+ HP++IDT+ I+N T KP LK L + +L +IQ GH S EDA+A + L+K
Sbjct: 368 KFTHPHIIDTANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLK 427
Query: 112 LKLSKGDLCSTKPAHHTVNLGF 133
LK+ G PA N F
Sbjct: 428 LKVKNG------PAFGLFNQDF 443
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 107/178 (60%), Gaps = 10/178 (5%)
Query: 357 EVTPTSP---------LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITN 407
E+TPT P + LDCEMC T + ELTRVTLVD Q V+ + LV P NPIT+
Sbjct: 199 ELTPTLPAPSGSCPPEIVALDCEMCIT-KEGLELTRVTLVDIQGQVLLDKLVMPTNPITD 257
Query: 408 YLTAYSGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTS 467
Y T YSGIT ++ V T L+ +Q+ +L+ + ILVG SL DL +LK+ H VIDT+
Sbjct: 258 YNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTA 317
Query: 468 VIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIG 525
V++ R++K KL++L FL +IQ + GH S EDA AA+ L LK+ G G
Sbjct: 318 VLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFG 375
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
++ H VIDT+V++ R++K KL++L FL +IQ + GH S EDA AA+ L L
Sbjct: 307 KISHNLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALL 366
Query: 113 KLSKG 117
K+ G
Sbjct: 367 KIKHG 371
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 321 LLLSALQMIEEDYPIPLRGELSAKFSKYINTKEVYAEVTPTSPLYGLDCEMCKTSNDQNE 380
L+LS Q++ DYP+ G+ + + ++ T + S ++ LDCEMC S
Sbjct: 187 LVLSEQQLVANDYPLD-SGDTNFD-TDWVQTVDF---THGGSHIFALDCEMC-LSEQGLV 240
Query: 381 LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATR-LEHVQKILSELLP 439
LTR++LV+ V+YE LVKP PI +YLT YSGIT L A + L VQK L +++
Sbjct: 241 LTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTLREVQKDLLKIIS 300
Query: 440 PDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG 499
IL+G SL DL +K+ HP V+DT++I++ KP LK L+ FL IQN G
Sbjct: 301 RSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSETFLNKSIQN--G 358
Query: 500 GHCSKEDAIAALRLVKLKLSKGDLIGLKL 528
H S EDA A L L KLK+ G G+ +
Sbjct: 359 EHDSVEDARACLELTKLKILNGLAFGIGI 387
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
++ HP V+DT++I++ KP LK L+ FL IQN G H S EDA A L L KL
Sbjct: 318 KLKHPLVVDTAIIYHHKAGDPFKPSLKYLSETFLNKSIQN--GEHDSVEDARACLELTKL 375
Query: 113 KLSKG 117
K+ G
Sbjct: 376 KILNG 380
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+Y LDCEMC T++ ELTRVT+VD VVY++ VKP N I +Y T +SG+T A +A
Sbjct: 407 IYALDCEMCYTTHGL-ELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 465
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
+ L VQ IL IL+G SL DL ALK++H V+DT+V+F +K L+
Sbjct: 466 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKRSLR 525
Query: 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
L + +LG IQ+ GH S EDA A L+LV K+
Sbjct: 526 NLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKV 560
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H V+DT+V+F +K L+ L + +LG IQ+ GH S EDA A L+LV
Sbjct: 499 KLIHSTVLDTAVLFPHYLGFPYKRSLRNLAADYLGQIIQDSQDGHNSSEDANACLQLVMW 558
Query: 113 KL 114
K+
Sbjct: 559 KV 560
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+Y LDCEMC T++ ELTRVT+VD VVY++ VKP N I +Y T +SG+T A +A
Sbjct: 501 IYALDCEMCYTTHGL-ELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
+ L VQ IL IL+G SL DL ALK++H V+DT+V+F +K L+
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLR 619
Query: 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
L + +L IQ+ GH S EDA A L+LV K+
Sbjct: 620 NLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKV 654
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H V+DT+V+F +K L+ L + +L IQ+ GH S EDA A L+LV
Sbjct: 593 KLIHSTVVDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMW 652
Query: 113 KL 114
K+
Sbjct: 653 KV 654
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+Y LDCEMC T++ ELTRVT+VD VVY++ VKP N I +Y T +SG+T A +A
Sbjct: 409 IYALDCEMCYTTHGL-ELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 467
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
+ L VQ IL IL+G SL DL ALK++H V+DT+V+F +K L+
Sbjct: 468 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLR 527
Query: 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
L + +L IQ+ GH S EDA A L+LV K+
Sbjct: 528 NLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKV 562
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H V+DT+V+F +K L+ L + +L IQ+ GH S EDA A L+LV
Sbjct: 501 KLIHSTVVDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMW 560
Query: 113 KL 114
K+
Sbjct: 561 KV 562
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
++ LDCEM T+ ELTRVT+VD VVY++ VKP N + +Y T +SG+T A L
Sbjct: 1052 VFALDCEMSYTTYGL-ELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDT 1110
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
+ L VQ +L + D IL+G SL DL ALK++H V+DTSV+F +K L+
Sbjct: 1111 SITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLR 1170
Query: 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
L + +L IQ+ GH S EDA A + LV K+
Sbjct: 1171 NLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKI 1205
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H V+DTSV+F +K L+ L + +L IQ+ GH S EDA A + LV
Sbjct: 1144 KVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIW 1203
Query: 113 KL 114
K+
Sbjct: 1204 KI 1205
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 344 KFSKYINT--KEVYAEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKP 401
+ ++ T KE+ + P +Y LDCEM T+ ELTRVT+VD +VVY++ VKP
Sbjct: 1040 RLEGFVKTFEKELSGDTHPG--IYALDCEMSYTTYGL-ELTRVTVVDTDVHVVYDTFVKP 1096
Query: 402 YNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP 461
N I +Y T +SG+T A LA + L VQ +L + D IL+G SL DL ALK++H
Sbjct: 1097 DNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHS 1156
Query: 462 YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
V+DTSV+F +K L+ L + +L IQ+ GH S EDA A + LV K+
Sbjct: 1157 TVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKV 1213
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H V+DTSV+F +K L+ L + +L IQ+ GH S EDA A + LV
Sbjct: 1152 KVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIW 1211
Query: 113 KL 114
K+
Sbjct: 1212 KV 1213
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 332 DYPIPLRGELSAKFSKYINTKEVYAEVTPTS-PLYGLDCEMCKTSNDQNELTRVTLVDEQ 390
DY P E ++ T ++ PT + +DCEM + + RV VD
Sbjct: 115 DYLFPSNAE------DWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVDRD 168
Query: 391 ENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLN 450
V+ + VKP P+ +Y T +G+T L + +Q+ L + D ILVGQSLN
Sbjct: 169 LKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLN 228
Query: 451 CDLHALKMMHPYVIDTSVIF--NTTG----IRTHKPKLKMLTSHFLGLDIQNQDGGHCSK 504
DL LK+ H VIDTS++F N G +R +P L L LG ++Q + H
Sbjct: 229 HDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCV 288
Query: 505 EDAIAALRLVKLKLSKG 521
DA AA++LV L G
Sbjct: 289 HDAEAAMKLVLAILDNG 305
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 1/167 (0%)
Query: 356 AEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGI 415
++V ++ + +DCEM + L RV VD VV + VKP P+ +Y T +G+
Sbjct: 137 SKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGV 196
Query: 416 TRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFN-TTG 474
T L + +QK L L ILVG L+ DL L++ H VIDTS +F
Sbjct: 197 TAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDA 256
Query: 475 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 521
+T +P L L LG +++ H DA AA++LV + KG
Sbjct: 257 PKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 303
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 HPYVIDTSVIFN-TTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 114
H VIDTS +F +T +P L L LG +++ H DA AA++LV +
Sbjct: 241 HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300
Query: 115 SKG 117
KG
Sbjct: 301 EKG 303
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 357 EVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGIT 416
+V ++ + +DCEM + L RV +VD V+ + VKP P+ +Y T +GIT
Sbjct: 133 KVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGIT 192
Query: 417 RALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIF---NTT 473
+ + + +Q+ L L ILVG SLN DL LK+ HP VIDT+++F NT
Sbjct: 193 AEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTR 252
Query: 474 GIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513
+R +P L L LG +++ H DA AA++L
Sbjct: 253 KLR--RPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 56 HPYVIDTSVIF---NTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
HP VIDT+++F NT +R +P L L LG +++ H DA AA++L
Sbjct: 236 HPKVIDTALVFKYPNTRKLR--RPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALA 293
Query: 113 KLSKGDLCSTKPAHHTVNLGFSLNDYLMFAHELP 146
+ K + KP+ + + +F H++P
Sbjct: 294 VVEKRVDTTIKPSKEML----EVEKAKLFLHKIP 323
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+Y LDCEM T L R+T+VD Q N V + VKP + + T +SG+T +
Sbjct: 1478 VYALDCEMVYTIAGP-ALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQINSA 1536
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
L+ + L + + D IL+G SL DL A++++H VIDT+++F +T R K LK
Sbjct: 1537 PDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFRST--RDTKVALK 1594
Query: 484 MLTSHFLGLDIQ--NQDG-GHCSKEDAIAALRLVKLKLSKGDLIGLK 527
+L++ L +IQ N+D GH S EDA+ + L+ L + I ++
Sbjct: 1595 VLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIFYGLRNPESIAIR 1641
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQ--NQDG-GHCSKEDAIAALRL 109
+++H VIDT+++F +T R K LK+L++ L +IQ N+D GH S EDA+ + L
Sbjct: 1570 RVVHKNVIDTAILFRST--RDTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDL 1627
Query: 110 V 110
+
Sbjct: 1628 I 1628
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 367 LDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
LDCEM +++ RV++V++ VY+ VKP P+T+Y TA SGI L
Sbjct: 246 LDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK-QG 304
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVI--FNTTGIRTHKP 480
LE VQK ++E+L ILVG +L+ DL L + HP + DT F + +++ +P
Sbjct: 305 EELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQ-VKSGRP 362
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513
L++L+ LGL +Q + HCS +DA AA+RL
Sbjct: 363 SLRLLSEKILGLQVQQAE--HCSIQDAQAAMRL 393
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 71 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 109
+++ +P L++L+ LGL +Q + HCS +DA AA+RL
Sbjct: 357 VKSGRPSLRLLSEKILGLQVQQAE--HCSIQDAQAAMRL 393
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 359 TPTSPL---YGLDCEMCKTS---NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAY 412
+PT+ + +DCEM ++ + L RV++V+ VY+S V+P IT++ T
Sbjct: 108 SPTAEIGKYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHV 167
Query: 413 SGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIF 470
SGI+ +A A LE VQK ++E+L ILVG +++ DL AL + HP + DTS
Sbjct: 168 SGISPKHMAE-ARSLEQVQKDVAEIL-DGRILVGHAVSNDLDALLLGHPKRDIRDTSKHP 225
Query: 471 NTTGIR-THKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
I P+LK+L S FLGL+I QDG H S EDA A + L +
Sbjct: 226 PYRKIAGGGSPRLKILASEFLGLNI--QDGAHSSVEDAKATMLLYR 269
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 76 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 111
P+LK+L S FLGL+I QDG H S EDA A + L +
Sbjct: 236 PRLKILASEFLGLNI--QDGAHSSVEDAKATMLLYR 269
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
LDCEM E RV++V++ VY+ VKP P+T+Y TA SGI L
Sbjct: 256 LDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK-QG 314
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVI--FNTTGIRTHKP 480
E V+K ++E+L ILVG +L+ DL L + HP + DT F + +++ +P
Sbjct: 315 EEFEVVKKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSR-VKSGRP 372
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513
LK L+ LG+ +Q + HCS +DA AA+RL
Sbjct: 373 SLKRLSEKILGIRVQQAE--HCSIQDAQAAMRL 403
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 71 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 109
+++ +P LK L+ LG+ +Q + HCS +DA AA+RL
Sbjct: 367 VKSGRPSLKRLSEKILGIRVQQAE--HCSIQDAQAAMRL 403
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 5/153 (3%)
Query: 366 GLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVAT 425
LDCE+C T+N EL R+T+V +E+++ + +KP I + T +SGI A
Sbjct: 384 ALDCELCYTTNGM-ELARLTVV-AKESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGI 441
Query: 426 RLEHVQKILSEL-LPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKM 484
++ + + EL + + IL+G L DL+A++++H VIDT+++F + LK
Sbjct: 442 TMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKY 501
Query: 485 LTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLK 517
LT +LG IQ H S+EDA++AL+LV K
Sbjct: 502 LTKKYLGTTIQTST--HDSEEDAVSALQLVFYK 532
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H VIDT+++F + LK LT +LG IQ H S+EDA++AL+LV
Sbjct: 474 RLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTST--HDSEEDAVSALQLVFY 531
Query: 113 K 113
K
Sbjct: 532 K 532
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 348 YINTKEVYAEVTPTSP--LYGLDCEMCKTSNDQNELTRVTLVDE-QENVVYESLVKPYNP 404
Y TKE++ + S + G+DCEM T+ EL R+T +D V + +KP
Sbjct: 223 YQFTKELFTTTSTKSKSRVLGIDCEMGFTTKG-FELMRITAIDYFTSKTVLDIFIKPIGE 281
Query: 405 ITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI 464
I ++ T YSGI L E + L E++ + IL+G L D++A++++H +I
Sbjct: 282 IVDFNTRYSGIHE--LTDDFLSWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENII 339
Query: 465 DTSVIF---NTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520
DTS++F TG T + LK L FL IQ G H S ED+IAA+ +VK + K
Sbjct: 340 DTSILFPNKWKTG-PTRRWSLKDLAFEFLSRRIQT--GEHDSCEDSIAAIDIVKYFVKK 395
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 53 QMMHPYVIDTSVIF---NTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 109
+++H +IDTS++F TG T + LK L FL IQ G H S ED+IAA+ +
Sbjct: 332 RLIHENIIDTSILFPNKWKTG-PTRRWSLKDLAFEFLSRRIQT--GEHDSCEDSIAAIDI 388
Query: 110 VKLKLSK 116
VK + K
Sbjct: 389 VKYFVKK 395
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM +E L RV++VD +Y+S VKP +TN+ TA SGI++ + A
Sbjct: 136 IDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMR-FA 194
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIFNTTGIRTH---- 478
E VQ + +LL ILVG L DL AL + HP + DT+ +G + +
Sbjct: 195 RDFEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKF---SGFKKYANGR 250
Query: 479 KPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
KP L++L LG++IQ G H S EDA A + L +
Sbjct: 251 KPSLRVLAQQLLGVEIQG--GEHSSIEDARATMLLFR 285
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCE D + L RV++V+ NVV + V+P P+T++ T SGI +A
Sbjct: 122 MDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANAV 181
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTS--VIFNTTGIRTHKP 480
T+ E QK +S +L ILVG S++ DL AL + HP + DTS + F P
Sbjct: 182 TQ-EDCQKQVSNVLKG-RILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTP 239
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
LK LT L LDI QDG H S EDA A + L K
Sbjct: 240 SLKKLTKEILQLDI--QDGEHSSIEDARATMLLYK 272
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 76 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 111
P LK LT L LDIQ DG H S EDA A + L K
Sbjct: 239 PSLKKLTKEILQLDIQ--DGEHSSIEDARATMLLYK 272
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 366 GLDCEMCKTSNDQNELTRVTLVD-EQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
LDCEM TS E+ R+T+VD VVY+ ++KP I + + +SGI + A
Sbjct: 322 ALDCEMAFTSKGY-EMIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHH--IDDTA 378
Query: 425 TRLEHVQK--ILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKL 482
+ +K I ++ ++IL+G L+ DL ++++H VIDT+V++ +K L
Sbjct: 379 PTIHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYPAG---KYKSSL 435
Query: 483 KMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLS 519
K L+ L IQ G H S EDAIAA+ ++K KLS
Sbjct: 436 KNLSFEILSRRIQG--GEHDSSEDAIAAMDVIKKKLS 470
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H VIDT+V++ +K LK L+ L IQ G H S EDAIAA+ ++K
Sbjct: 413 RIVHDKVIDTAVLYPAG---KYKSSLKNLSFEILSRRIQG--GEHDSSEDAIAAMDVIKK 467
Query: 113 KLS 115
KLS
Sbjct: 468 KLS 470
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+ +DCEM TS EL RVT +D + +V+P I +Y T +SGI+ + P+
Sbjct: 597 VVAVDCEMLYTSLGM-ELCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGIS-DINEPI 654
Query: 424 ATR---------LEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTG 474
T E +++ +L+ ILVG L DL A++++H +IDTS+++
Sbjct: 655 ITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILYPDFN 714
Query: 475 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
R +K LK L +L IQ G H S EDA+AAL +VK L
Sbjct: 715 PR-YKTALKTLALKYLKRTIQT--GEHDSMEDALAALDVVKCHL 755
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H +IDTS+++ R +K LK L +L IQ G H S EDA+AAL +VK
Sbjct: 697 RLIHDRIIDTSILYPDFNPR-YKTALKTLALKYLKRTIQT--GEHDSMEDALAALDVVKC 753
Query: 113 KL 114
L
Sbjct: 754 HL 755
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 366 GLDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+DCE + + L RV+LV+ NVV + VKP +T++ T SGIT +
Sbjct: 97 AMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN- 155
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTS--VIFNTTGIRTHK 479
A + Q+ LS++L D ILVG ++ DL AL + HP VIDT+ + F +
Sbjct: 156 AVSFKQAQQQLSDIL-KDKILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKGKS 214
Query: 480 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
P LK L L +DIQ+ G H S EDA A + + K
Sbjct: 215 PSLKKLAKEILNMDIQS--GQHSSVEDARATMLIYK 248
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 366 GLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVAT 425
+DCEM ++D + L RV++V+ +VVY++ V+P +T++ T SG+ ++ A
Sbjct: 95 AMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGV-KSFHMRDAP 153
Query: 426 RLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVIFNTTGI-RTHKPKL 482
E VQ ++++L + +LVG +++ DL L + HP + DTS + + P L
Sbjct: 154 SFEKVQAEVAKIL-DNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGL 212
Query: 483 KMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
K L LG DIQ+ G H S +DA A + L K
Sbjct: 213 KKLAEVILGRDIQS--GQHSSVQDAQATMELYK 243
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 367 LDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM T +EL R ++V NV+Y+ ++P PI +Y T +SGITR + A
Sbjct: 113 IDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMR-KA 171
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIFN---TTGIRTH- 478
+ QK + +LL ++VG +L+ D ALK +HP DT+ + N G+ T
Sbjct: 172 VPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRA 230
Query: 479 KPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
+ LK L L IQ GH S EDA A+ L +L
Sbjct: 231 RVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 366 GLDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+DCE + E L RV++V+ + V++ VKP +T++ T SG+T +
Sbjct: 101 AMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNE- 159
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVIFNTTGIRTHK-P 480
A + Q S+LL ILVG +++ DL AL + HP + DTS I K P
Sbjct: 160 AISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTP 218
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
LK L+SHFL +DIQ H S EDA A + L +L
Sbjct: 219 SLKKLSSHFLKIDIQG--SAHSSVEDARATMLLFRL 252
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 76 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
P LK L+SHFL +DIQ H S EDA A + L +L
Sbjct: 218 PSLKKLSSHFLKIDIQG--SAHSSVEDARATMLLFRL 252
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 367 LDCEMCKT--SNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM T S + L R ++VD + +Y+S V+P +T++ T SGI++ +A A
Sbjct: 219 IDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHMA-SA 277
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIFNTTGIRTH---- 478
E VQ ++ LL ILVG + DL L HP+ + DT+ +G R +
Sbjct: 278 RSFESVQATVAALL-KGRILVGHDVKHDLEVLGFEHPHRDIRDTA---KYSGFRKYGHGP 333
Query: 479 KPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
KP L++L LG++I G H S EDA A+ L +
Sbjct: 334 KPSLRVLAKEVLGIEIHQ--GQHSSVEDARVAMLLFR 368
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM D E L RV++V+ VY+ VKP +T+Y TA SGI R
Sbjct: 237 MDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGI-RPEDVKKG 295
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVI--FNTTGIRTHKP 480
+ VQK +SE+L LVG +++ DL L + HP + DT F +++ +P
Sbjct: 296 EPFKVVQKEVSEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQK-VKSGRP 353
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513
LK+L L + +Q G HCS +DA AA+RL
Sbjct: 354 SLKLLCEKILNVKVQT--GEHCSVQDAQAAMRL 384
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 71 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 109
+++ +P LK+L L + +Q G HCS +DA AA+RL
Sbjct: 348 VKSGRPSLKLLCEKILNVKVQT--GEHCSVQDAQAAMRL 384
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 343 AKFSKYINTKEVYAEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQEN-VVYESLVKP 401
+K + NT+ V E + LDCEM TS EL R+T+V+ N V+++ +V+P
Sbjct: 206 SKLLPFRNTRGVEGETN----VLALDCEMAYTSCGY-ELIRLTVVEFWTNAVLFDEIVQP 260
Query: 402 YNPITNYLTAYSGITRALLAPVATRLEHVQKILS-ELLPPDAILVGQSLNCDLHALKMMH 460
I + T +SG+ A T E + LS ++ ++IL+G L DL+ L+++H
Sbjct: 261 LGEIIDLNTQFSGVHEIDRAVAKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIH 320
Query: 461 PYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLS 519
+IDT++++ K L+ L F L + Q G H S EDAIAA+ +VK KL
Sbjct: 321 DKIIDTAILYPNGKF---KSSLRNLA--FQELSRRIQTGEHDSSEDAIAAMDVVKHKLG 374
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
+++H +IDT++++ K L+ L F L + Q G H S EDAIAA+ +VK
Sbjct: 317 RIIHDKIIDTAILYPNGKF---KSSLRNLA--FQELSRRIQTGEHDSSEDAIAAMDVVKH 371
Query: 113 KLS 115
KL
Sbjct: 372 KLG 374
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 367 LDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM T +EL R ++V +V+Y+ ++P PI +Y T +SGITR + A
Sbjct: 108 IDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH-KA 166
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVIFN----TTGIRTH 478
+ QK + +LL ++VG +L+ D ALK +HP + DT+ + N + +
Sbjct: 167 IPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSSLTRA 225
Query: 479 KPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
+ LK L + L IQ GH S EDA+ A+ L +L
Sbjct: 226 RVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMELYQL 263
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM + +E L RV++V+ +Y+ V+P +T+Y T SG+ L A
Sbjct: 138 IDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKG-A 196
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGI-RTHKPK 481
VQ ++ L+ +LVG ++ DL AL + HP V+ DT+ + +T P
Sbjct: 197 PSFSQVQGEVANLIK-GKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKYPS 255
Query: 482 LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGD 522
LK L LG+DIQ + H S EDA A + + + + K D
Sbjct: 256 LKKLAKLVLGIDIQLEGESHSSVEDARATMAVFRSQKPKWD 296
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 54 MMHPYVI--DTSVIFNTTGI-RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLV 110
+ HP V+ DT+ + +T P LK L LG+DIQ + H S EDA A + +
Sbjct: 229 LSHPKVLIRDTATFQPLRDLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAVF 288
Query: 111 KLKLSKGD 118
+ + K D
Sbjct: 289 RSQKPKWD 296
>sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX3 PE=1 SV=1
Length = 404
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 337 LRGELS---AKFSKYINTKEVYAEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDE-QEN 392
RGE K SK+ +T ++ + LDCEM TS E+ R+T+VD
Sbjct: 217 FRGESYDELCKISKFSSTDDI----DGVENVLSLDCEMAFTSLGY-EMIRLTIVDFFTGK 271
Query: 393 VVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSE-LLPPDAILVGQSLNC 451
+++ +++P I + + +SG+ T E + LSE L+ ++IL+G L
Sbjct: 272 TLFDHVIQPIGDIVDLNSDFSGVHEIDRTNCPTYKEALDVFLSENLINKNSILIGHGLEN 331
Query: 452 DLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAAL 511
DL+ +++ H VIDT+++++ T K LK L L IQN G H S +DAIA +
Sbjct: 332 DLNVMRLFHNKVIDTAILYSRTKF---KVSLKNLAFEVLSRKIQN--GEHDSSQDAIATM 386
Query: 512 RLVKLKLS 519
+VK+K+
Sbjct: 387 DVVKVKIG 394
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
++ H VIDT+++++ T K LK L L IQN G H S +DAIA + +VK+
Sbjct: 337 RLFHNKVIDTAILYSRTKF---KVSLKNLAFEVLSRKIQN--GEHDSSQDAIATMDVVKV 391
Query: 113 KLS 115
K+
Sbjct: 392 KIG 394
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Query: 338 RGELSAKFSKYINTKEVYAEVTPTSPLYGLDCEMCKTSNDQNE--LTRVTLVDEQENVVY 395
+G L K S + +V +DCE D E L RV++V+ V
Sbjct: 87 KGALEEKISVDMAQSGKAGKVGSVGKFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVL 146
Query: 396 ESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHA 455
+ V+P +T++ T SGIT A + T LE Q+ ++ +L + +L+G L+ DL
Sbjct: 147 DLYVRPKEKVTDWRTWVSGITPAHMKQAVT-LEEAQRRVAAML-KNRVLIGHGLHHDLEM 204
Query: 456 LKMMHP--YVIDTSVI--FNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAAL 511
L + HP + DTS+ F P LK L L +DIQ ++ H S EDA AAL
Sbjct: 205 LMVSHPKAQIRDTSMHGPFREKYGAGKTPSLKKLAREVLNIDIQGKE--HSSVEDARAAL 262
Query: 512 RLVK 515
L K
Sbjct: 263 LLYK 266
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 367 LDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM T +EL R ++V +V+Y+ ++P PI +Y T +SGITR + A
Sbjct: 112 IDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH-KA 170
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIFN-----TTGIRT 477
+ QK + +LL ++VG +L+ D ALK +HP DT+ + N ++ IRT
Sbjct: 171 IPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSSLIRT 229
Query: 478 HKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
+ LK L + L IQ GH S EDA+ A+ L +L
Sbjct: 230 -RVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQL 267
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
Query: 367 LDCEMCKTSND--QNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM + +N L RV++V+ V+ ++ V+P P+T+Y T SG+ ++ L A
Sbjct: 135 IDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG-A 193
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGI-RTHKPK 481
+ + V K ++ LL D IL+G +++ DL L + HP + DT I + +P
Sbjct: 194 PQFDEVNKQVANLL-HDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRPG 252
Query: 482 LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
LK L+ LG+ IQ G H S DA A+ L +L
Sbjct: 253 LKKLSELLLGVQIQT--GAHSSVVDARVAMALYRL 285
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
Query: 367 LDCEMCKTSND--QNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM + +N L RV++V+ V+ ++ V+P P+T+Y T SG+ ++ L A
Sbjct: 135 IDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG-A 193
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGI-RTHKPK 481
+ + V K ++ LL D IL+G +++ DL L + HP + DT I + +P
Sbjct: 194 PQFDEVNKQVANLL-HDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRPG 252
Query: 482 LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
LK L+ LG+ IQ G H S DA A+ L +L
Sbjct: 253 LKKLSELLLGVQIQT--GAHSSVVDARVAMALYRL 285
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 367 LDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM T +EL R ++V +V+Y+ ++P PI +Y T +SGITR + A
Sbjct: 113 IDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMC-KA 171
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPY--VIDTSVIFN-----TTGIRT 477
+ QK + +LL ++VG +L+ D ALK +HP DT+ + N + IR
Sbjct: 172 IPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPSLHIRA 230
Query: 478 HKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
+ LK L L IQ GH S EDA A+ L +L
Sbjct: 231 -RVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 367 LDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
+DCEM D E L RV++V+ VY+ V+P +T+Y TA SGI R
Sbjct: 231 MDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGI-RPDDIKNG 289
Query: 425 TRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVI--FNTTGIRTHKP 480
+ VQ ++E+L LVG +++ DL L + HP + DT F +++ +P
Sbjct: 290 EAFKDVQAEVAEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEK-VKSGRP 347
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513
LK+L L + +Q G HCS +DA AA+RL
Sbjct: 348 SLKLLCEKILNVKVQT--GEHCSVQDAQAAMRL 378
Score = 36.2 bits (82), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 71 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 109
+++ +P LK+L L + +Q G HCS +DA AA+RL
Sbjct: 342 VKSGRPSLKLLCEKILNVKVQT--GEHCSVQDAQAAMRL 378
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 364 LYGLDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLA 421
+ +DCEM T + L R ++V+ +V+Y+ ++P I +Y T +SGI + +
Sbjct: 195 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHMV 254
Query: 422 ---PVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGIR 476
P T + KILS ++VG +++ D AL+ HP + DTS I +
Sbjct: 255 NATPFKTARSQILKILS-----GKVVVGHAIHNDYKALQYFHPKSLTRDTSQI-PLLNRK 308
Query: 477 THKPK-----LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
P+ LK LT L DIQ GH S EDA A L L KL
Sbjct: 309 ADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYKL 353
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 19/35 (54%)
Query: 78 LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
LK LT L DIQ GH S EDA A L L KL
Sbjct: 319 LKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYKL 353
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 364 LYGLDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLA 421
+ +DCEM T + L R ++V+ +V+Y+ V P I NY T +SGI + +
Sbjct: 194 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMV 253
Query: 422 ---PVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGIR 476
P T + KILS +++G +++ D AL+ HP + DTS I +
Sbjct: 254 NATPFKTARSQILKILS-----GKVVIGHAIHNDYKALQYFHPKSLTRDTSRI-PLLNRK 307
Query: 477 THKPK-----LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
P+ LK LT L DIQ + GH S EDA A + L KL
Sbjct: 308 ADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELYKL 352
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+ LDCEM + + RV VD V+ + VKP+ P+ +Y TA +G+T +
Sbjct: 75 MLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQKA 134
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRT-HKPKL 482
L +Q+ L L AIL+ HP VIDTS++F R +P L
Sbjct: 135 TLSLVDIQEKLRPFLSAGAILID-------------HPIVIDTSLVFKYPNSRKLRRPSL 181
Query: 483 KMLTSHFLGLDIQNQDGGH 501
L LG ++Q H
Sbjct: 182 NTLCMSVLGYEVQKAGVSH 200
>sp|Q4WYA1|REXO3_ASPFU RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1
Length = 645
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 356 AEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVD-EQENVVYESLVKPYNPITNYLTAYSG 414
A+ P P+ DCEM T+ EL R+T V Q ++ + LV+P I + + +SG
Sbjct: 415 ADKGPQQPVC-FDCEMGYTTLGL-ELIRLTAVSWPQGKLLLDILVRPMGEILDLNSRFSG 472
Query: 415 I------------------------TRALLAPVATRLEHVQKILSELLPPDAILVGQSLN 450
+ + + +P A R +L + L PD L+G +++
Sbjct: 473 VFPEHYQKAIPYKSTSSPSTTGDGALQVVESPAAAR-----ALLFKFLQPDTPLIGHAID 527
Query: 451 CDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIA 509
DL+A +++HP +IDT +++ + LK L +L DIQ + GH SKEDAIA
Sbjct: 528 NDLNACRIIHPTIIDTVLLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIA 587
Query: 510 ALRLVKLKLSK 520
LV++K ++
Sbjct: 588 TGDLVRVKAAE 598
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-GHCSKEDAIAALRLVK 111
+++HP +IDT +++ + LK L +L DIQ + GH SKEDAIA LV+
Sbjct: 534 RIIHPTIIDTVLLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIATGDLVR 593
Query: 112 LKLSK 116
+K ++
Sbjct: 594 VKAAE 598
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 20/185 (10%)
Query: 346 SKYINTKEVYAEVTPTSP--LYGLDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKP 401
S + +++ Y+ V+ P + +DCEM T + L R ++V+ +V+Y+ + P
Sbjct: 155 STHTHSENKYSGVSQKIPGKMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILP 214
Query: 402 YNPITNYLTAYSGITRALLA---PVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKM 458
I +Y T +SGI + + P + KIL+ I+VG +++ D AL+
Sbjct: 215 PCHIVDYRTRWSGIRKQHMVNATPFKIARNQILKILA-----GKIVVGHAIHNDFKALQY 269
Query: 459 MHPYVI--DTSVIFNTTGIRTHKPK-----LKMLTSHFLGLDIQNQDGGHCSKEDAIAAL 511
+HP + DTS I + P+ LK LT L DIQ GH S EDA A +
Sbjct: 270 IHPKSLTRDTSHI-PLLNRKADCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATM 328
Query: 512 RLVKL 516
L KL
Sbjct: 329 ELYKL 333
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 78 LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 112
LK LT L DIQ GH S EDA A + L KL
Sbjct: 299 LKSLTKKLLNRDIQAGKSGHSSVEDAQATMELYKL 333
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 366 GLDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+DCE + E L R+++V+ +VV + VKP + + T SGI +
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNA 182
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTS--VIFNTTGIRTHK 479
T + QK +++L ILVG +L DL AL + HP + DTS + F +
Sbjct: 183 IT-FKEAQKKTADIL-EGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKT 240
Query: 480 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVK 515
P LK LT L + I Q+G H S EDA A + L K
Sbjct: 241 PSLKKLTREVLKISI--QEGEHSSVEDARATMLLYK 274
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 366 GLDCEMCKTSNDQNELTRVTLVDE-QENVVYESLVKPYNPITNYLTAYSGITRALLAPVA 424
LDCEM T+ E+ R+T+VD +Y+ +++P + + T +SG+ +
Sbjct: 241 ALDCEMGFTTMGY-EMVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDILYAK 299
Query: 425 TRLEHVQKIL-SELLPPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLK 483
+ ++ +L ++++ ++IL+G L DL+ +++ H ++DT+++++ + K LK
Sbjct: 300 DYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMYS---VGRFKNSLK 356
Query: 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLK 517
L+ L IQ G H S +DAIAA+ ++K K
Sbjct: 357 NLSFEILSRKIQL--GEHDSSQDAIAAMDIIKAK 388
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 364 LYGLDCEMCKTS--NDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLA 421
+ +DCEM T + L R ++V+ +V+Y+ + P I +Y T +SGI + +
Sbjct: 179 MVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 238
Query: 422 ---PVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHPYVI--DTSVIFNTTGIR 476
P + KIL+ I+VG +++ D AL+ HP + DTS I +
Sbjct: 239 NATPFKIARGQILKILT-----GKIVVGHAIHNDFKALQYFHPKSLTRDTSHI-PPLNRK 292
Query: 477 THKPK-----LKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
P+ LK LT L DIQ GH S EDA A + L KL
Sbjct: 293 ADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKL 337
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 366 GLDCEMCKTSNDQNE--LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPV 423
+DCE D E L R+++++ V+ ++ V+P +T++ T SGI +
Sbjct: 118 AIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQD- 176
Query: 424 ATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVIFNTTGIRTHK-P 480
A + Q EL+ + ILVG ++N DL L + HP + DT I K P
Sbjct: 177 AIDFKTAQLKTMELI-NNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIAGGKSP 235
Query: 481 KLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKL 516
LK L HF+ +DI Q G H S EDA A + L +L
Sbjct: 236 SLKKLIKHFIQVDI--QIGQHSSVEDARATMLLFRL 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,513,213
Number of Sequences: 539616
Number of extensions: 6690178
Number of successful extensions: 21289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 495
Number of HSP's that attempted gapping in prelim test: 19791
Number of HSP's gapped (non-prelim): 1704
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)