Query psy17350
Match_columns 528
No_of_seqs 378 out of 1811
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 6.3E-31 2.2E-35 249.2 13.2 159 361-521 4-169 (189)
2 2p1j_A POLIII, DNA polymerase 99.9 2.9E-27 9.9E-32 223.3 15.0 158 361-525 11-180 (186)
3 2gui_A DNA polymerase III epsi 99.9 7.3E-26 2.5E-30 214.0 13.3 156 362-522 9-186 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 99.9 2.2E-25 7.5E-30 211.8 11.3 161 362-527 10-201 (204)
5 3mxm_B Three prime repair exon 99.9 2.5E-25 8.5E-30 219.5 5.3 156 361-520 11-214 (242)
6 1y97_A Three prime repair exon 99.9 1.4E-24 4.8E-29 211.4 9.8 157 360-520 8-209 (238)
7 2xri_A ERI1 exoribonuclease 3; 99.9 4.4E-24 1.5E-28 207.5 11.8 161 362-527 31-220 (224)
8 2igi_A Oligoribonuclease; RNAs 99.9 7.3E-24 2.5E-28 198.1 11.3 144 362-520 5-176 (180)
9 1zbh_A 3'-5' exonuclease ERI1; 99.9 1.9E-23 6.5E-28 211.8 13.7 161 362-526 78-268 (299)
10 2f96_A Ribonuclease T; RNAse, 99.9 1.8E-23 6.3E-28 202.5 10.5 158 361-524 28-216 (224)
11 3u3y_B Three prime repair exon 99.9 6.1E-24 2.1E-28 217.7 6.4 156 361-520 11-214 (314)
12 2gbz_A Oligoribonuclease; ORN, 99.9 3.5E-23 1.2E-27 197.0 8.9 145 360-520 7-180 (194)
13 3cg7_A CRN-4, cell death-relat 99.9 4.1E-23 1.4E-27 210.7 7.9 159 362-525 19-213 (308)
14 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 9.4E-23 3.2E-27 211.6 9.9 161 362-526 128-318 (349)
15 3v9w_A Ribonuclease T; DEDD nu 99.9 4.7E-22 1.6E-26 193.7 12.4 155 361-521 36-221 (235)
16 2qxf_A Exodeoxyribonuclease I; 99.8 3.9E-21 1.3E-25 207.1 9.7 157 361-521 8-201 (482)
17 3tr8_A Oligoribonuclease; tran 99.8 4.3E-21 1.5E-25 183.1 8.5 147 360-521 7-181 (186)
18 1wlj_A Interferon stimulated g 99.1 4E-11 1.4E-15 113.2 3.0 109 4-117 53-169 (189)
19 2kfn_A Klenow fragment of DNA 98.7 1.3E-07 4.5E-12 104.3 15.5 145 362-522 26-194 (605)
20 4hec_A Putative uncharacterize 98.7 8.4E-08 2.9E-12 91.8 11.4 147 364-519 24-180 (190)
21 1x9m_A DNA polymerase; DNA plo 98.6 3.5E-08 1.2E-12 110.7 6.2 138 364-526 1-188 (698)
22 2p1j_A POLIII, DNA polymerase 98.1 5E-07 1.7E-11 84.7 0.8 103 5-117 63-176 (186)
23 2gui_A DNA polymerase III epsi 98.0 2.1E-06 7.2E-11 80.5 2.4 108 5-120 66-188 (194)
24 4dfk_A DNA polymerase I, therm 97.9 1.6E-05 5.5E-10 86.9 8.1 118 363-521 11-128 (540)
25 3saf_A Exosome component 10; e 97.9 4.4E-05 1.5E-09 81.2 10.2 131 361-520 128-276 (428)
26 1y97_A Three prime repair exon 97.7 9.9E-06 3.4E-10 78.3 1.2 109 5-116 77-209 (238)
27 1w0h_A 3'-5' exonuclease ERI1; 97.6 2.8E-05 9.7E-10 73.1 4.3 111 5-122 69-200 (204)
28 2igi_A Oligoribonuclease; RNAs 97.6 1.6E-05 5.4E-10 73.6 2.4 95 5-116 65-176 (180)
29 2f96_A Ribonuclease T; RNAse, 97.6 1.3E-05 4.5E-10 77.0 1.0 105 5-116 87-212 (224)
30 2xri_A ERI1 exoribonuclease 3; 97.6 1.9E-05 6.7E-10 76.1 2.0 110 5-122 88-219 (224)
31 1vk0_A Hypothetical protein; h 97.5 0.00031 1E-08 67.7 9.8 86 434-519 100-205 (206)
32 2e6m_A Werner syndrome ATP-dep 97.5 0.00024 8.1E-09 67.2 8.2 90 433-522 87-196 (208)
33 1zbh_A 3'-5' exonuclease ERI1; 97.4 8.6E-05 2.9E-09 74.9 4.3 111 5-121 137-267 (299)
34 3mxm_B Three prime repair exon 97.3 3.8E-05 1.3E-09 75.3 0.7 112 5-120 82-218 (242)
35 1qht_A Protein (DNA polymerase 97.3 0.00037 1.3E-08 79.1 8.0 141 361-518 134-327 (775)
36 3v9w_A Ribonuclease T; DEDD nu 97.3 0.00011 3.9E-09 70.9 3.2 105 5-116 95-220 (235)
37 1zbu_A ERI-1 homolog, 3'-5' ex 97.3 0.00015 5E-09 75.2 4.2 111 5-121 187-317 (349)
38 4gmj_B CCR4-NOT transcription 97.2 0.0043 1.5E-07 62.7 14.3 155 360-519 32-243 (285)
39 1noy_A Protein (DNA polymerase 97.2 0.0032 1.1E-07 65.7 13.6 149 362-516 106-334 (388)
40 2gbz_A Oligoribonuclease; ORN, 97.2 0.0001 3.4E-09 69.5 1.5 92 6-116 70-180 (194)
41 3u3y_B Three prime repair exon 97.1 0.00011 3.8E-09 75.2 1.7 112 5-120 82-218 (314)
42 1yt3_A Ribonuclease D, RNAse D 97.0 0.0034 1.2E-07 65.0 11.6 130 362-520 22-169 (375)
43 2hbj_A Exosome complex exonucl 96.9 0.0017 5.7E-08 68.6 8.2 85 434-520 151-253 (410)
44 3pv8_A DNA polymerase I; DNA p 96.8 0.00049 1.7E-08 76.0 3.3 129 364-520 31-180 (592)
45 3cg7_A CRN-4, cell death-relat 96.8 0.00019 6.6E-09 72.9 0.1 109 5-121 79-213 (308)
46 1s5j_A DNA polymerase I; repli 96.4 0.026 8.9E-07 64.7 13.8 149 360-514 188-386 (847)
47 2qxf_A Exodeoxyribonuclease I; 96.3 0.0019 6.4E-08 69.7 3.6 106 5-116 64-200 (482)
48 2p51_A SPCC18.06C protein; DED 96.1 0.082 2.8E-06 54.4 14.2 156 359-519 42-254 (333)
49 2d5r_A CCR4-NOT transcription 96.0 0.09 3.1E-06 52.2 14.0 155 361-520 23-234 (252)
50 3iay_A DNA polymerase delta ca 95.9 0.022 7.6E-07 65.9 10.3 146 360-517 247-465 (919)
51 3cym_A Uncharacterized protein 95.9 0.048 1.6E-06 58.0 12.0 86 432-520 85-186 (440)
52 3k59_A POL II, DNA polymerase 95.7 0.066 2.3E-06 61.0 12.9 139 359-517 150-349 (786)
53 3tr8_A Oligoribonuclease; tran 95.6 0.0045 1.5E-07 58.6 2.5 94 6-116 70-180 (186)
54 3qex_A DNA polymerase, GP43; d 95.6 0.035 1.2E-06 64.1 10.2 156 361-516 107-337 (903)
55 1uoc_A POP2; hydrolase, DEDD n 95.5 0.28 9.6E-06 49.6 15.2 158 359-519 35-263 (289)
56 2a1r_A Poly(A)-specific ribonu 95.1 0.069 2.4E-06 56.7 9.7 99 418-520 262-396 (430)
57 3d45_A Poly(A)-specific ribonu 94.7 0.048 1.6E-06 59.0 7.4 97 418-519 257-390 (507)
58 2gv9_A DNA polymerase; polymer 94.0 0.32 1.1E-05 57.8 12.8 156 360-517 318-550 (1193)
59 1vk0_A Hypothetical protein; h 91.3 0.046 1.6E-06 52.5 0.6 61 30-90 99-167 (206)
60 2e6m_A Werner syndrome ATP-dep 85.5 0.47 1.6E-05 44.3 3.3 87 29-116 86-194 (208)
61 3saf_A Exosome component 10; e 81.4 1.3 4.6E-05 46.8 5.0 84 29-114 172-274 (428)
62 2kfn_A Klenow fragment of DNA 71.9 3.6 0.00012 45.1 5.3 92 25-116 76-192 (605)
63 2py5_A DNA polymerase; protein 69.9 8.1 0.00028 42.3 7.5 65 362-456 6-70 (575)
64 2hbj_A Exosome complex exonucl 67.0 4.3 0.00015 42.5 4.4 84 30-115 150-252 (410)
65 1yt3_A Ribonuclease D, RNAse D 64.1 9.1 0.00031 39.2 6.1 86 29-115 64-168 (375)
66 1x9m_A DNA polymerase; DNA plo 52.0 4.3 0.00015 45.4 1.2 94 27-121 42-187 (698)
67 3q7c_A Nucleoprotein; deddh ex 47.2 14 0.00049 35.7 3.8 138 363-509 58-210 (243)
68 3pv8_A DNA polymerase I; DNA p 38.8 10 0.00035 41.7 1.6 87 28-114 70-178 (592)
69 3mwp_A Nucleoprotein; structur 35.0 26 0.0009 37.3 3.8 138 363-509 392-544 (577)
70 4dfk_A DNA polymerase I, therm 32.9 5.9 0.0002 43.1 -1.5 79 28-116 47-127 (540)
71 3cym_A Uncharacterized protein 26.1 56 0.0019 34.3 4.6 83 29-115 85-185 (440)
72 1bgx_T TAQ DNA polymerase; DNA 25.5 85 0.0029 35.9 6.3 77 432-520 340-419 (832)
73 3ikm_A DNA polymerase subunit 22.3 13 0.00043 43.9 -1.4 30 440-469 193-228 (1172)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=6.3e-31 Score=249.24 Aligned_cols=159 Identities=29% Similarity=0.401 Sum_probs=137.2
Q ss_pred CCCeEEEeeceecCCCCc-CcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCC
Q psy17350 361 TSPLYGLDCEMCKTSNDQ-NELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLP 439 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~-~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~ 439 (528)
..+|++|||||||+++.. .+|++|++|+.+|+++|++||+|..+|+++++++||||++||++ +|++++|+++|.++++
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~-a~~~~~v~~~~~~~l~ 82 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG-ATPFAVARLEILQLLK 82 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTT-CEEHHHHHHHHHHHHT
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcC-CCCHHHHHHHHHHHHC
Confidence 457999999999998764 58899999999999999999999999999999999999999999 5999999999999998
Q ss_pred CCcEEEEcCchhhHHHHcccCCC--Eeeehhhchhc---CC-CCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHH
Q psy17350 440 PDAILVGQSLNCDLHALKMMHPY--VIDTSVIFNTT---GI-RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRL 513 (528)
Q Consensus 440 ~d~ILVGHnL~fDL~~L~~~hp~--vIDTs~L~~~~---~~-~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL 513 (528)
+++|||||+.||+++|+..+|+ ++||..++... .. ...+++|+.||+.|||++++.+..+|+|++||+||++|
T Consensus 83 -~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l 161 (189)
T 1wlj_A 83 -GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161 (189)
T ss_dssp -TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHH
T ss_pred -CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHH
Confidence 9999999999999999998885 89999885421 22 23578999999987899987632379999999999999
Q ss_pred HHHHHHcC
Q psy17350 514 VKLKLSKG 521 (528)
Q Consensus 514 ~~~~L~~g 521 (528)
|+++++.-
T Consensus 162 ~~~l~~~~ 169 (189)
T 1wlj_A 162 YQISQRIR 169 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.95 E-value=2.9e-27 Score=223.32 Aligned_cols=158 Identities=22% Similarity=0.278 Sum_probs=135.3
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEe-CCcEE--EEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhc
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDE-QENVV--YESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSEL 437 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~-~G~vi--~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~ 437 (528)
..++++|||||||+++..++|++|++|.. +|+++ |++||+|..+|+++.+++||||+++|+++ +++.+|+++|.++
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENK-RSIEEVLPEFLGF 89 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTC-CBHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcC-CCHHHHHHHHHHH
Confidence 45899999999999987789999999986 78876 99999999999999999999999999994 9999999999999
Q ss_pred CCCCcEEEEcCchhhHHHHccc---------CCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHH
Q psy17350 438 LPPDAILVGQSLNCDLHALKMM---------HPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAI 508 (528)
Q Consensus 438 i~~d~ILVGHnL~fDL~~L~~~---------hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~ 508 (528)
++ +.+|||||+.||+.+|+.. +.+++||..+++... ...+++|+.||+. +|++... +|+|++||+
T Consensus 90 l~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~~~-~gi~~~~---~H~Al~Da~ 163 (186)
T 2p1j_A 90 LE-DSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVVEK-LGLGPFR---HHRALDDAR 163 (186)
T ss_dssp SS-SCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHHHH-TTCCSTT---CCHHHHHHH
T ss_pred HC-CCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHHHH-cCCCCCC---CcCHHHHHH
Confidence 98 8999999999999999632 346899999887644 4457899999986 6888653 799999999
Q ss_pred HHHHHHHHHHHcCCcCC
Q psy17350 509 AALRLVKLKLSKGDLIG 525 (528)
Q Consensus 509 AT~eL~~~~L~~g~~fg 525 (528)
+|++||+++++++..=|
T Consensus 164 ~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 164 VTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999998888765544
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.93 E-value=7.3e-26 Score=214.03 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=130.6
Q ss_pred CCeEEEeeceecCCC-----CcCcEEEEEEEEe-CCcEE---EEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHH
Q psy17350 362 SPLYGLDCEMCKTSN-----DQNELTRVTLVDE-QENVV---YESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQK 432 (528)
Q Consensus 362 ~~~vALDcEmtgt~~-----g~~eLirIs~Vd~-~G~vi---~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~ 432 (528)
.++++|||||||+++ ..++|++|++|.. +|+++ |++||+|..+|+++.+++||||++||+++ |++.+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~ 87 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDK-PTFAEVAD 87 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTS-CCHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCC-CCHHHHHH
Confidence 479999999999988 3489999999998 56653 99999999999999999999999999995 99999999
Q ss_pred HHHhcCCCCcEEEEcCchhhHHHHccc-------C------CCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCC
Q psy17350 433 ILSELLPPDAILVGQSLNCDLHALKMM-------H------PYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG 499 (528)
Q Consensus 433 ~L~~~i~~d~ILVGHnL~fDL~~L~~~-------h------p~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~ 499 (528)
+|.++++ +.+|||||+.||+.+|+.. . ..++||..+++...+ ..+++|+.||+. +|++... ..
T Consensus 88 ~~~~~l~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p-~~~~~L~~l~~~-~gi~~~~-~~ 163 (194)
T 2gui_A 88 EFMDYIR-GAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCAR-YEIDNSK-RT 163 (194)
T ss_dssp HHHHHHT-TSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHHH-TTCCCTT-CS
T ss_pred HHHHHHC-CCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcC-CCCCCHHHHHHH-cCcCCCC-CC
Confidence 9999998 8999999999999999642 1 258999888765432 235799999986 6887653 13
Q ss_pred CCChHHHHHHHHHHHHHHHHcCC
Q psy17350 500 GHCSKEDAIAALRLVKLKLSKGD 522 (528)
Q Consensus 500 ~HdAlEDA~AT~eL~~~~L~~g~ 522 (528)
+|+|++||++|++||++++++..
T Consensus 164 ~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 164 LHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp SCCHHHHHHHHHHHHHHHTC---
T ss_pred CCChHHHHHHHHHHHHHHHhccc
Confidence 79999999999999998776543
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.92 E-value=2.2e-25 Score=211.77 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=135.1
Q ss_pred CCeEEEeeceecCCC----CcCcEEEEEEEEe---CCcEE--EEEEEcCCC--CCCCCceeecCCChhhhcccCCCHHHH
Q psy17350 362 SPLYGLDCEMCKTSN----DQNELTRVTLVDE---QENVV--YESLVKPYN--PITNYLTAYSGITRALLAPVATRLEHV 430 (528)
Q Consensus 362 ~~~vALDcEmtgt~~----g~~eLirIs~Vd~---~G~vi--~d~LVkP~~--~I~dy~T~isGIT~e~L~~a~p~l~dV 430 (528)
..|++|||||||.++ ..++|++|++|.. +|+++ |++||+|.. +|+++.+++||||++||++ +|++.+|
T Consensus 10 ~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~-~~~~~~v 88 (204)
T 1w0h_A 10 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDR-ADTFPQV 88 (204)
T ss_dssp SEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHT-SBCHHHH
T ss_pred CEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhC-CCCHHHH
Confidence 468999999999986 4589999998876 68887 999999998 8999999999999999999 5999999
Q ss_pred HHHHHhcCCCCc-------EEEEcCchhhHH-HHcc-------cCC----CEeeehhhchhcCC-CCCCCCHHHHHHHhh
Q psy17350 431 QKILSELLPPDA-------ILVGQSLNCDLH-ALKM-------MHP----YVIDTSVIFNTTGI-RTHKPKLKMLTSHFL 490 (528)
Q Consensus 431 ~~~L~~~i~~d~-------ILVGHnL~fDL~-~L~~-------~hp----~vIDTs~L~~~~~~-~~~k~sLk~La~~~L 490 (528)
+++|.+|+. +. +|||||+.||++ +|+. ..| .++||..+++...+ +...++|..||+. +
T Consensus 89 ~~~~~~~l~-~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~ 166 (204)
T 1w0h_A 89 LKKVIDWMK-LKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 166 (204)
T ss_dssp HHHHHHHHH-HTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-T
T ss_pred HHHHHHHHH-hcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-c
Confidence 999999998 44 599999999997 9863 233 48999998864321 1235799999986 6
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17350 491 GLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIGLK 527 (528)
Q Consensus 491 g~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~fg~~ 527 (528)
|++... .+|+|++||++|++||.++++++..+..+
T Consensus 167 gi~~~~--~~H~Al~Da~~ta~l~~~l~~~~~~~~i~ 201 (204)
T 1w0h_A 167 GMDYDG--RPHCGLDDSKNIARIAVRMLQDGCELRIN 201 (204)
T ss_dssp TCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCC--CccCcHHHHHHHHHHHHHHHHCCCeeeec
Confidence 888753 26999999999999999999998776543
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.91 E-value=2.5e-25 Score=219.52 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=130.1
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEe-CC-------------------cE--EEEEEEcCCCCCCCCceeecCCChh
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDE-QE-------------------NV--VYESLVKPYNPITNYLTAYSGITRA 418 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~-~G-------------------~v--i~d~LVkP~~~I~dy~T~isGIT~e 418 (528)
-..||+|||||||+++..++|++|++|.. +| ++ .|++||+|..+|+...+++||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 34699999999999988899999999987 33 34 5899999999999999999999999
Q ss_pred hhcccC-CCHH-HHHHHHHhcCCCC----cEEEEcCc-hhhHHHHccc----------CC-CEeeehhhchhc----C--
Q psy17350 419 LLAPVA-TRLE-HVQKILSELLPPD----AILVGQSL-NCDLHALKMM----------HP-YVIDTSVIFNTT----G-- 474 (528)
Q Consensus 419 ~L~~a~-p~l~-dV~~~L~~~i~~d----~ILVGHnL-~fDL~~L~~~----------hp-~vIDTs~L~~~~----~-- 474 (528)
||++++ |+|+ +|+++|.+|++ + .+|||||. .||+.+|+.. .+ .++||..+++.. .
T Consensus 91 ~l~~~g~p~~~~ev~~~~~~fl~-~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 91 ELEVQGRQRFDDNLAILLRAFLQ-RQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHH-TSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHhcCCCchhHHHHHHHHHHHh-cCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 999954 7896 99999999998 7 89999995 9999999632 11 489998886531 1
Q ss_pred --CCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 475 --IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 475 --~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
+...+++|..||++|+|++... +|+|++||+||++||+++.+.
T Consensus 170 ~~~~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp -----CCCSHHHHHHHHHSSCCSS---TTSHHHHHHHHHHHHTSSHHH
T ss_pred ccCCCCCcCHHHHHHHHhCCCCCC---CcChHHHHHHHHHHHHHHHHH
Confidence 2245789999998878998753 799999999999999876544
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.91 E-value=1.4e-24 Score=211.44 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=126.2
Q ss_pred CCCCeEEEeeceecCCCCcCcEEEEEEEEeCC-----------------cEE--EEEEEcCCCCCCCCceeecCCChhhh
Q psy17350 360 PTSPLYGLDCEMCKTSNDQNELTRVTLVDEQE-----------------NVV--YESLVKPYNPITNYLTAYSGITRALL 420 (528)
Q Consensus 360 ~~~~~vALDcEmtgt~~g~~eLirIs~Vd~~G-----------------~vi--~d~LVkP~~~I~dy~T~isGIT~e~L 420 (528)
...+|++|||||||+++..++|++|++|..++ +++ |++||+|..+|+++.+++||||++||
T Consensus 8 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l 87 (238)
T 1y97_A 8 RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGL 87 (238)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHH
T ss_pred ccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHH
Confidence 34579999999999988778999999998742 554 99999999999999999999999999
Q ss_pred c--ccCCCH-HHHHHHHHhcCCC---CcEEEEcCc-hhhHHHHccc-------C---CCEeeehhhchhcC---------
Q psy17350 421 A--PVATRL-EHVQKILSELLPP---DAILVGQSL-NCDLHALKMM-------H---PYVIDTSVIFNTTG--------- 474 (528)
Q Consensus 421 ~--~a~p~l-~dV~~~L~~~i~~---d~ILVGHnL-~fDL~~L~~~-------h---p~vIDTs~L~~~~~--------- 474 (528)
. + .|+| ++|.++|.+|+.. +.+|||||+ .||+.+|+.. . ..++||..+++...
T Consensus 88 ~~~~-~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~ 166 (238)
T 1y97_A 88 ARCR-KAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRA 166 (238)
T ss_dssp HHTT-CCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC------
T ss_pred hhcC-CCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccC
Confidence 4 5 4888 5899999998873 289999999 9999999642 1 24899988876432
Q ss_pred CCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 475 IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 475 ~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
+...+++|..|+++++|++... +|+|++||++|++||+++++.
T Consensus 167 p~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 167 RGRQGYSLGSLFHRYFRAEPSA---AHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp ----CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCHHHHHHHHhCCCCcc---CccHHHHHHHHHHHHHHHHHH
Confidence 2235789999999767888653 799999999999999987654
No 7
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.90 E-value=4.4e-24 Score=207.47 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=131.5
Q ss_pred CCeEEEeeceecCCCCcC--cEEEEEEEEeC---CcEE--EEEEEcCCC--CCCCCceeecCCChhhhcccCCCHHHHHH
Q psy17350 362 SPLYGLDCEMCKTSNDQN--ELTRVTLVDEQ---ENVV--YESLVKPYN--PITNYLTAYSGITRALLAPVATRLEHVQK 432 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~--eLirIs~Vd~~---G~vi--~d~LVkP~~--~I~dy~T~isGIT~e~L~~a~p~l~dV~~ 432 (528)
..|++|||||||.++..+ +|++|++|..+ |+++ |++||+|.. +|+++.+++||||++||++ +|++++|++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~-a~~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDG-QPSLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTT-CCCHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcC-CCCHHHHHH
Confidence 469999999999998754 99999999773 3666 999999998 8999999999999999999 599999999
Q ss_pred HHHhcCCCCcEEEEcCc--------hhhHHH-Hcc-------cCC----CEeeehhhchhcCCCCCCCCHHHHHHHhhCC
Q psy17350 433 ILSELLPPDAILVGQSL--------NCDLHA-LKM-------MHP----YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGL 492 (528)
Q Consensus 433 ~L~~~i~~d~ILVGHnL--------~fDL~~-L~~-------~hp----~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~ 492 (528)
+|.++++ +.+|||||+ .||+++ |+. ..| .++|+...+...+....+++|..|++. +|+
T Consensus 110 ~f~~~l~-~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~-~gi 187 (224)
T 2xri_A 110 RVDEWMA-KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKG-LSL 187 (224)
T ss_dssp HHHHHHH-HTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHH-TTC
T ss_pred HHHHHHh-hcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHH-cCC
Confidence 9999998 899999999 999997 632 223 589965554322111224799999985 688
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCC
Q psy17350 493 DIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIGLK 527 (528)
Q Consensus 493 ~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~fg~~ 527 (528)
+... .+|+|++||++|++||.+++++|..|..+
T Consensus 188 ~~~~--~~H~Al~DA~~ta~l~~~l~~~g~~~~it 220 (224)
T 2xri_A 188 QHIG--RPHSGIDDCKNIANIMKTLAYRGFIFKQT 220 (224)
T ss_dssp CCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCC--CCcChHHHHHHHHHHHHHHHHcCCEEeec
Confidence 7643 37999999999999999999998877654
No 8
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.90 E-value=7.3e-24 Score=198.07 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=113.4
Q ss_pred CCeEEEeeceecCCCCcCcEEEEEEEEe--CCcEE---EEEEEcCCCCCCCCc-------eeecCCChhhhcccCCCHHH
Q psy17350 362 SPLYGLDCEMCKTSNDQNELTRVTLVDE--QENVV---YESLVKPYNPITNYL-------TAYSGITRALLAPVATRLEH 429 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~eLirIs~Vd~--~G~vi---~d~LVkP~~~I~dy~-------T~isGIT~e~L~~a~p~l~d 429 (528)
.+|++|||||||+++..++|++|++|.. +|+++ |++||+|..+|+++. +.+||||++|+++ +|++++
T Consensus 5 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~-~~~~~~ 83 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAS-TMGDRE 83 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHC-CCCHHH
T ss_pred CcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhc-CCCHHH
Confidence 4799999999999998899999999976 45565 899999998876554 5679999999999 599999
Q ss_pred HHHHHHhcCCC-----CcEEEEcCchhhHHHHcccC--------CCEee--ehh-hchhcCCCCCCCCHHHHHHHhhCCc
Q psy17350 430 VQKILSELLPP-----DAILVGQSLNCDLHALKMMH--------PYVID--TSV-IFNTTGIRTHKPKLKMLTSHFLGLD 493 (528)
Q Consensus 430 V~~~L~~~i~~-----d~ILVGHnL~fDL~~L~~~h--------p~vID--Ts~-L~~~~~~~~~k~sLk~La~~~Lg~~ 493 (528)
|+++|.+|++. +.+|||||+.||+.+|+..+ .+++| |.. +.+... +.+ + .|++
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~-----p~~---~---~~i~ 152 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWK-----PEI---L---DGFT 152 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHC-----GGG---G---GGSC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhC-----hHh---h---hCCC
Confidence 99999999984 37999999999999998543 35788 442 333221 111 1 1333
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 494 IQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 494 Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
. ..+|+|++||+||++||++++++
T Consensus 153 --~-~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 153 --K-QGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp --C-CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred --C-cCCcCcHHHHHHHHHHHHHHHHH
Confidence 2 24899999999999999988775
No 9
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=211.84 Aligned_cols=161 Identities=16% Similarity=0.252 Sum_probs=134.4
Q ss_pred CCeEEEeeceecCC----CCcCcEEEEEEEEeC---CcEE--EEEEEcCCC--CCCCCceeecCCChhhhcccCCCHHHH
Q psy17350 362 SPLYGLDCEMCKTS----NDQNELTRVTLVDEQ---ENVV--YESLVKPYN--PITNYLTAYSGITRALLAPVATRLEHV 430 (528)
Q Consensus 362 ~~~vALDcEmtgt~----~g~~eLirIs~Vd~~---G~vi--~d~LVkP~~--~I~dy~T~isGIT~e~L~~a~p~l~dV 430 (528)
..|++|||||||.+ +..++|++|++|..+ |+++ |++||+|.. +|+++.+++||||++||+++ +++.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~a-p~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcC-CCHHHH
Confidence 47899999999996 345899999999873 5776 999999998 89999999999999999995 999999
Q ss_pred HHHHHhcCCCC------cEEEEcCchhhHH-HHcc-------cCC----CEeeehhhchhc-CCCCCCCCHHHHHHHhhC
Q psy17350 431 QKILSELLPPD------AILVGQSLNCDLH-ALKM-------MHP----YVIDTSVIFNTT-GIRTHKPKLKMLTSHFLG 491 (528)
Q Consensus 431 ~~~L~~~i~~d------~ILVGHnL~fDL~-~L~~-------~hp----~vIDTs~L~~~~-~~~~~k~sLk~La~~~Lg 491 (528)
+.+|.+|+... .++||||+.||+. +|+. ..| .++||..+|+.. +.+...++|..||+. +|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cC
Confidence 99999999833 4999999999999 9964 223 489998888643 222224899999986 68
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHcCCcCCC
Q psy17350 492 LDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIGL 526 (528)
Q Consensus 492 ~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~fg~ 526 (528)
++... .+|+|++||+||++||+++++++..+..
T Consensus 236 i~~~g--~~H~Al~DA~ata~l~~~l~~~~~~~~~ 268 (299)
T 1zbh_A 236 MDYDG--RPNCGLDDSKNIARIAVRMLQDGCELRI 268 (299)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHHhCCcCCh
Confidence 88753 2699999999999999999998766554
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.89 E-value=1.8e-23 Score=202.49 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=130.3
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEe----CCcE----EEEEEEcC--CCCCCCCceeecCCChh-hhcccCCCHHH
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDE----QENV----VYESLVKP--YNPITNYLTAYSGITRA-LLAPVATRLEH 429 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~----~G~v----i~d~LVkP--~~~I~dy~T~isGIT~e-~L~~a~p~l~d 429 (528)
...|++|||||||+++..++|++|++|.. +|++ .|++||+| ..+|+++.+++||||++ ++++ ++++.+
T Consensus 28 ~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~-~~~~~~ 106 (224)
T 2f96_A 28 GYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRM-AVQEEA 106 (224)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCC-CBCHHH
T ss_pred CCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhc-CCCHHH
Confidence 45789999999999988789999999987 5875 38999999 57899999999999997 5888 599999
Q ss_pred HHHHHHhcCC--------CCcEEEEcCchhhHHHHccc-----C---C----CEeeehhhchhcCCCCCCCCHHHHHHHh
Q psy17350 430 VQKILSELLP--------PDAILVGQSLNCDLHALKMM-----H---P----YVIDTSVIFNTTGIRTHKPKLKMLTSHF 489 (528)
Q Consensus 430 V~~~L~~~i~--------~d~ILVGHnL~fDL~~L~~~-----h---p----~vIDTs~L~~~~~~~~~k~sLk~La~~~ 489 (528)
|+++|.+++. .+.+|||||+.||+.+|+.. . | .++||..+++...+ +++|+.||+.
T Consensus 107 v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~~- 182 (224)
T 2f96_A 107 ALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLAKACQA- 182 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHHHHHHH-
Confidence 9999998874 37999999999999999631 1 2 47999998875332 3699999986
Q ss_pred hCCcccCCCCCCChHHHHHHHHHHHHHHHHcCCcC
Q psy17350 490 LGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLI 524 (528)
Q Consensus 490 Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~f 524 (528)
+|+++.. ..+|+|++||++|++||.+++++....
T Consensus 183 ~gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~~~~~ 216 (224)
T 2f96_A 183 AGMEFDN-REAHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp TTCCCCT-TSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCC-CCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 6888642 247999999999999999888764433
No 11
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.89 E-value=6.1e-24 Score=217.68 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=129.4
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEeC-C-------------------cE--EEEEEEcCCCCCCCCceeecCCChh
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDEQ-E-------------------NV--VYESLVKPYNPITNYLTAYSGITRA 418 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~~-G-------------------~v--i~d~LVkP~~~I~dy~T~isGIT~e 418 (528)
-..||+|||||||+++.+++|++|++|..+ | ++ -|++||+|..+|+...+++||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 346999999999999888999999999873 3 12 4899999999999999999999999
Q ss_pred hhcccC-CCH-HHHHHHHHhcCCCC----cEEEEcC-chhhHHHHccc-------CC----CEeeehhhch-hcC-----
Q psy17350 419 LLAPVA-TRL-EHVQKILSELLPPD----AILVGQS-LNCDLHALKMM-------HP----YVIDTSVIFN-TTG----- 474 (528)
Q Consensus 419 ~L~~a~-p~l-~dV~~~L~~~i~~d----~ILVGHn-L~fDL~~L~~~-------hp----~vIDTs~L~~-~~~----- 474 (528)
||++++ |+| ++|+++|.+|++ + .+||||| +.||+.+|+.. .+ .++||..+++ ..+
T Consensus 91 ~l~~aG~P~f~~ev~~~l~~fL~-~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 91 ELEVQGRQRFDDNLAILLRAFLQ-RQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHTTCCBSCHHHHHHHHHHHH-TSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHhCCCCCcHHHHHHHHHHHHh-cCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 999943 789 799999999998 7 8999999 99999999642 11 3899988654 111
Q ss_pred --CCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 475 --IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 475 --~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
....+++|..||++|+|++... +|+|++||+||++||+++.++
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~~---aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCSC---SSSHHHHHHHHHHHHHSSHHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 1236789999999878998754 799999999999999876654
No 12
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.5e-23 Score=196.95 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=114.7
Q ss_pred CCCCeEEEeeceecCCCCcCcEEEEEEEEeCCc--EE---EEEEEcCCCCC----CCCceee---cCCChhhhcccCCCH
Q psy17350 360 PTSPLYGLDCEMCKTSNDQNELTRVTLVDEQEN--VV---YESLVKPYNPI----TNYLTAY---SGITRALLAPVATRL 427 (528)
Q Consensus 360 ~~~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~--vi---~d~LVkP~~~I----~dy~T~i---sGIT~e~L~~a~p~l 427 (528)
...+|++|||||||+++..++|++|++|..+|+ ++ |+++|+|..+| ++|.+++ ||||++|+++ +|++
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~-~p~~ 85 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDS-QVTH 85 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHC-CCCH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhc-CCCH
Confidence 345799999999999998899999999988666 44 77899999876 6666666 9999999999 5999
Q ss_pred HHHHHHHHhcCCCCcE------EEEcCchhhHHHHcccCC--------CEeeehhhchhcCCCCCCCCHHHHHHHhhC--
Q psy17350 428 EHVQKILSELLPPDAI------LVGQSLNCDLHALKMMHP--------YVIDTSVIFNTTGIRTHKPKLKMLTSHFLG-- 491 (528)
Q Consensus 428 ~dV~~~L~~~i~~d~I------LVGHnL~fDL~~L~~~hp--------~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg-- 491 (528)
++|+++|.+|++ +.+ |||||+.||+.+|+..++ +.+|+..| +.|++.++.
T Consensus 86 ~ev~~~~~~~l~-~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l-------------~~l~~~~~p~~ 151 (194)
T 2gbz_A 86 AQAEAQTVAFLG-EWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTI-------------KELARRWAPAV 151 (194)
T ss_dssp HHHHHHHHHHHT-TTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHH-------------HHHHHHHCGGG
T ss_pred HHHHHHHHHHHH-HhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHH-------------HHHHHHhCHHH
Confidence 999999999998 777 999999999999986543 45666543 334443320
Q ss_pred -CcccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 492 -LDIQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 492 -~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
..+.. ..+|+|++||+||++||+++.++
T Consensus 152 ~~~i~~-~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 152 ASGFAK-SSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp GTTCCC-CSCCSHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCC-CCCcccHHHHHHHHHHHHHHHHH
Confidence 01322 24799999999999999988765
No 13
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.87 E-value=4.1e-23 Score=210.68 Aligned_cols=159 Identities=17% Similarity=0.262 Sum_probs=131.7
Q ss_pred CCeEEEeeceecCCCCcC---cEEEEEEEEe---CCcEE----EEEEEcCCCC--CCCCceeecCCChhhhcccCCCHHH
Q psy17350 362 SPLYGLDCEMCKTSNDQN---ELTRVTLVDE---QENVV----YESLVKPYNP--ITNYLTAYSGITRALLAPVATRLEH 429 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~---eLirIs~Vd~---~G~vi----~d~LVkP~~~--I~dy~T~isGIT~e~L~~a~p~l~d 429 (528)
..|++|||||||.++..+ +|++|++|.. +|+++ |++||+|... |+++.+++||||++||++ +|++++
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~-ap~~~e 97 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDT-ADTFDV 97 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHT-SCBHHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhc-CCCHHH
Confidence 468999999999988755 9999999976 56664 8999999985 999999999999999999 599999
Q ss_pred HHHHHHhcCCCCcEEEEcCc------hhhH-HHHcc-------cCC----CEeeehhhchhcC--CC----CCCCCHHHH
Q psy17350 430 VQKILSELLPPDAILVGQSL------NCDL-HALKM-------MHP----YVIDTSVIFNTTG--IR----THKPKLKML 485 (528)
Q Consensus 430 V~~~L~~~i~~d~ILVGHnL------~fDL-~~L~~-------~hp----~vIDTs~L~~~~~--~~----~~k~sLk~L 485 (528)
|+++|.+++. +.++||||+ .||+ .+|+. ..| +++||..+++... .. ..+++|..|
T Consensus 98 vl~~f~~~l~-~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 98 VYEQFQQWLI-TLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHHH-HHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHHH-hCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 9999999998 888999999 9999 68852 233 4799998876321 11 125789999
Q ss_pred HHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHcCCcCC
Q psy17350 486 TSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIG 525 (528)
Q Consensus 486 a~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~fg 525 (528)
++. +|+++.. .+|+|++||++|++||+++++.+..+.
T Consensus 177 ~~~-~gi~~~~--~~HrAl~DA~ata~l~~~l~~~~~~~~ 213 (308)
T 3cg7_A 177 NEY-YDLPTIG--RAHDAMDDCLNIATILQRMINMGAKVT 213 (308)
T ss_dssp HHH-TTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHH-cCCCCCC--CCcCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 975 7888754 259999999999999999998876543
No 14
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.87 E-value=9.4e-23 Score=211.64 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=133.8
Q ss_pred CCeEEEeeceecCC----CCcCcEEEEEEEEeC---CcEE--EEEEEcCCC--CCCCCceeecCCChhhhcccCCCHHHH
Q psy17350 362 SPLYGLDCEMCKTS----NDQNELTRVTLVDEQ---ENVV--YESLVKPYN--PITNYLTAYSGITRALLAPVATRLEHV 430 (528)
Q Consensus 362 ~~~vALDcEmtgt~----~g~~eLirIs~Vd~~---G~vi--~d~LVkP~~--~I~dy~T~isGIT~e~L~~a~p~l~dV 430 (528)
..||+|||||||.+ +..++|++|++|.++ |+++ |++||+|.. +|+++.+++||||++||+++ ++|.+|
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~a-p~~~eV 206 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 206 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTS-EEHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCC-CCHHHH
Confidence 57899999999995 345899999999873 5666 899999998 89999999999999999995 999999
Q ss_pred HHHHHhcCCCC------cEEEEcCchhhHH-HHcc-------cCC----CEeeehhhchhc-CCCCCCCCHHHHHHHhhC
Q psy17350 431 QKILSELLPPD------AILVGQSLNCDLH-ALKM-------MHP----YVIDTSVIFNTT-GIRTHKPKLKMLTSHFLG 491 (528)
Q Consensus 431 ~~~L~~~i~~d------~ILVGHnL~fDL~-~L~~-------~hp----~vIDTs~L~~~~-~~~~~k~sLk~La~~~Lg 491 (528)
+.+|.+|+... .+|||||+.||+. +|+. ..| .++||..+|+.. +.+...++|..|+++ +|
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cC
Confidence 99999999733 5999999999999 9964 234 489998888653 222224899999986 68
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHcCCcCCC
Q psy17350 492 LDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLIGL 526 (528)
Q Consensus 492 ~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g~~fg~ 526 (528)
++... .+|+|++||+||++||.++++.+..+.+
T Consensus 286 i~~~g--~~HrAl~DA~ata~ll~~ll~~~~~~~i 318 (349)
T 1zbu_A 286 MDYDG--RPHCGLDDSKNIARIAVRMLQDGCELRI 318 (349)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 88753 2699999999999999999988766544
No 15
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.87 E-value=4.7e-22 Score=193.70 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=129.8
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEe----CCcE----EEEEEEcC--CCCCCCCceeecCCChh-hhcccCCCHHH
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDE----QENV----VYESLVKP--YNPITNYLTAYSGITRA-LLAPVATRLEH 429 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~----~G~v----i~d~LVkP--~~~I~dy~T~isGIT~e-~L~~a~p~l~d 429 (528)
...|++|||||||+++..++|++|++|.. +|++ .|+.||+| ..+|+.+.+++||||++ ++++ ++++.+
T Consensus 36 ~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~-~~~~~~ 114 (235)
T 3v9w_A 36 GFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRG-AVSGYE 114 (235)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGC-CBCHHH
T ss_pred CCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhc-CCCHHH
Confidence 45799999999999988899999999985 5765 28899999 56899999999999999 9998 599999
Q ss_pred HHHHHHhcCC--------CCcEEEEcCchhhHHHHccc-------C-C----CEeeehhhchhcCCCCCCCCHHHHHHHh
Q psy17350 430 VQKILSELLP--------PDAILVGQSLNCDLHALKMM-------H-P----YVIDTSVIFNTTGIRTHKPKLKMLTSHF 489 (528)
Q Consensus 430 V~~~L~~~i~--------~d~ILVGHnL~fDL~~L~~~-------h-p----~vIDTs~L~~~~~~~~~k~sLk~La~~~ 489 (528)
|+++|.+++. ++.++||||+.||+.+|+.. . | .++||..+++...+ .++|..||+.
T Consensus 115 vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~~- 190 (235)
T 3v9w_A 115 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVLSKACQT- 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCHHHHHHH-
Confidence 9999999984 38999999999999999632 1 2 37899998765332 3699999996
Q ss_pred hCCcccCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy17350 490 LGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 521 (528)
Q Consensus 490 Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g 521 (528)
+|+++.. ...|+|++||++|++||.+++++.
T Consensus 191 ~gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 191 AGMDFDS-TQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp HTCCCCT-TTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCC-CCCcChHHHHHHHHHHHHHHHHHH
Confidence 5888753 147999999999999999887654
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.83 E-value=3.9e-21 Score=207.10 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=126.3
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEe--CCcEE---EEEEEcCCCCC--CCCceeecCCChhhhcccCCCHHHHHHH
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDE--QENVV---YESLVKPYNPI--TNYLTAYSGITRALLAPVATRLEHVQKI 433 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~--~G~vi---~d~LVkP~~~I--~dy~T~isGIT~e~L~~a~p~l~dV~~~ 433 (528)
...|++|||||||+++..++|++|++|.. +|+++ |+.||+|..+| ....+.+||||++||.++++.+.+|..+
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 35799999999999998899999999987 57776 99999999987 4567899999999999875666999999
Q ss_pred HHhcCC-CCcEEEEcC-chhhHHHHccc------C---------CCEeeehhhchhc---C------C----CCCCCCHH
Q psy17350 434 LSELLP-PDAILVGQS-LNCDLHALKMM------H---------PYVIDTSVIFNTT---G------I----RTHKPKLK 483 (528)
Q Consensus 434 L~~~i~-~d~ILVGHn-L~fDL~~L~~~------h---------p~vIDTs~L~~~~---~------~----~~~k~sLk 483 (528)
|.++++ ++++||||| +.||+.+|+.. . ..++||..+++.. . + ...+++|.
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 999997 689999999 99999999632 1 2368887765421 1 0 22467999
Q ss_pred HHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy17350 484 MLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 521 (528)
Q Consensus 484 ~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g 521 (528)
.||+. +|++... +|+|++||+||++||++..++.
T Consensus 168 ~L~~~-~Gi~~~~---aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 168 HLTKA-NGIEHSN---AHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp HHHHH-TTCCCC------CTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHH-cCCCCCC---CCCHHHHHHHHHHHHHHHHHhC
Confidence 99985 6887643 7999999999999998876543
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.83 E-value=4.3e-21 Score=183.09 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=112.1
Q ss_pred CCCCeEEEeeceecCCCCcCcEEEEEEEEeCC--cEE---EEEEEcCCC----CCCCCce---eecCCChhhhcccCCCH
Q psy17350 360 PTSPLYGLDCEMCKTSNDQNELTRVTLVDEQE--NVV---YESLVKPYN----PITNYLT---AYSGITRALLAPVATRL 427 (528)
Q Consensus 360 ~~~~~vALDcEmtgt~~g~~eLirIs~Vd~~G--~vi---~d~LVkP~~----~I~dy~T---~isGIT~e~L~~a~p~l 427 (528)
...+||++||||||+++..++|++|++|-.+| +++ ++.+|+|+. .++++.+ .+||||++|+++ +|++
T Consensus 7 ~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~-~p~~ 85 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNS-SVDE 85 (186)
T ss_dssp CTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTC-CCCH
T ss_pred CCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhc-CCCH
Confidence 45689999999999999889999999996566 444 345686443 2355544 456999999999 5999
Q ss_pred HHHHHHHHhcCC-----CCcEEEEcCchhhHHHHccc--------CCCEee--ehh-hchhcCCCCCCCCHHHHHHHhhC
Q psy17350 428 EHVQKILSELLP-----PDAILVGQSLNCDLHALKMM--------HPYVID--TSV-IFNTTGIRTHKPKLKMLTSHFLG 491 (528)
Q Consensus 428 ~dV~~~L~~~i~-----~d~ILVGHnL~fDL~~L~~~--------hp~vID--Ts~-L~~~~~~~~~k~sLk~La~~~Lg 491 (528)
++|.++|.+|+. .+++|||||+.||++||+.. |.+++| |.. |.+... +.+.. |
T Consensus 86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~-----P~~~~------~ 154 (186)
T 3tr8_A 86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWA-----PQIAA------A 154 (186)
T ss_dssp HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHC-----HHHHT------T
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHC-----ccccc------c
Confidence 999999999992 38999999999999999753 446899 554 544322 12211 4
Q ss_pred CcccCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy17350 492 LDIQNQDGGHCSKEDAIAALRLVKLKLSKG 521 (528)
Q Consensus 492 ~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g 521 (528)
++.. ..|+|++||+||.++++++.++-
T Consensus 155 ~~~~---~~HrAl~Da~ati~~l~~y~~~~ 181 (186)
T 3tr8_A 155 HIKE---SQHLALQDIRDSIEELRYYRAHL 181 (186)
T ss_dssp SCCC---CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC---CCcChHHHHHHHHHHHHHHHHHh
Confidence 4432 47999999999999999998763
No 18
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.06 E-value=4e-11 Score=113.20 Aligned_cols=109 Identities=23% Similarity=0.145 Sum_probs=85.8
Q ss_pred cceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEeccCCcC--cccccCCc--EeecccccCCCC--CC--CCC
Q psy17350 4 SLEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKTLNEA--DKQMMHPY--VIDTSVIFNTTG--IR--THK 75 (528)
Q Consensus 4 ~~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~l~~D--aL~l~Hp~--i~DTa~~~~~~~--~~--~~~ 75 (528)
.++++||+++++ .++. .+++|..++.+.+. +++||||....| .|+..+|. ++||..++++.+ +. ..+
T Consensus 53 ~~~i~GIt~~~l-~~a~--~~~~v~~~~~~~l~--~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~ 127 (189)
T 1wlj_A 53 RTRVSGVTPQHM-VGAT--PFAVARLEILQLLK--GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRR 127 (189)
T ss_dssp CHHHHCCCHHHH-TTCE--EHHHHHHHHHHHHT--TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----
T ss_pred ccCCCCCCHHHH-cCCC--CHHHHHHHHHHHHC--CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCC
Confidence 467899999965 4443 35568899999887 689999999999 88888884 899998865322 21 257
Q ss_pred ccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcC
Q psy17350 76 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 117 (528)
Q Consensus 76 ~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g 117 (528)
.||+.|++.+||.+++.++..|++.+||+||++||+..++++
T Consensus 128 ~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 128 VSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999875447999999999999999877653
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.71 E-value=1.3e-07 Score=104.32 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCCC
Q psy17350 362 SPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPD 441 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~d 441 (528)
.+++++|+||++.++...+++.|+++-.+|+.. ||.+.. .+ + |+ .+ .+.++++.+.|.+++...
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---~~---~-~~-----~~-~l~~~~vl~~L~~~L~d~ 89 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---DY---L-DA-----PD-QISRERALELLKPLLEDE 89 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---CS---T-TC-----CC-CCCHHHHHHHHHHHHTCT
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---cc---c-cc-----cc-ccCHHHHHHHHHHHHcCC
Confidence 378999999999987667899998885566654 342211 01 1 22 23 356899999999999832
Q ss_pred -cEEEEcCchhhHHHHccc---CC-CEeeehhhchhcCCCCCCCCHHHHHHHhhCCccc-------CCCC----------
Q psy17350 442 -AILVGQSLNCDLHALKMM---HP-YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQ-------NQDG---------- 499 (528)
Q Consensus 442 -~ILVGHnL~fDL~~L~~~---hp-~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq-------~~~~---------- 499 (528)
.++||||+.||+.+|+.. .+ .++||..+.....+...+++|+.||+.|||...- .+..
T Consensus 90 ~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le 169 (605)
T 2kfn_A 90 KALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE 169 (605)
T ss_dssp TSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHH
T ss_pred CCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHH
Confidence 389999999999999642 23 3899998866544434478999999999876531 1110
Q ss_pred --CCChHHHHHHHHHHHHHHHHcCC
Q psy17350 500 --GHCSKEDAIAALRLVKLKLSKGD 522 (528)
Q Consensus 500 --~HdAlEDA~AT~eL~~~~L~~g~ 522 (528)
.|.|.+||.+|++|+..+.++..
T Consensus 170 ~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 170 EAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14488999999999987766543
No 20
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.69 E-value=8.4e-08 Score=91.82 Aligned_cols=147 Identities=18% Similarity=0.124 Sum_probs=94.2
Q ss_pred eEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEE--cCCCCCCCCce--eecCCChhhhcccCCCHHHHHHHHHhcCC
Q psy17350 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLV--KPYNPITNYLT--AYSGITRALLAPVATRLEHVQKILSELLP 439 (528)
Q Consensus 364 ~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LV--kP~~~I~dy~T--~isGIT~e~L~~a~p~l~dV~~~L~~~i~ 439 (528)
-+.+|||+++.... .+|++|++|.++|+..|...- .|. .+.+|.. -+.++...-... ..++.+++.+|.+|+.
T Consensus 24 r~FlDTEFt~d~~~-~eLISIGlV~EdGrEFYav~~d~d~~-~~~~wVr~~Vlp~L~~~~~~~-~~s~~~i~~~L~~FL~ 100 (190)
T 4hec_A 24 RYFYDTEFIEDGHT-IELISIGVVAEDGREYYAVSTEFDPE-RAGSWVRTHVLPKLPPPASQL-WRSRQQIRLDLEEFLR 100 (190)
T ss_dssp EEEEEEEEEECSSC-EEEEEEEEEETTSCEEEEEETTSCGG-GCCHHHHHHTGGGSCCTTSTT-EECHHHHHHHHHHHTT
T ss_pred EEEEeeeecCCCCC-CCEEEEEEEcCCCCEEEEEecCCChh-hCcHHHHhccccCCCCCcccc-cCCHHHHHHHHHHHHH
Confidence 37899999985555 799999999999997665542 232 3344432 246665444433 2589999999999996
Q ss_pred CC----cEEEEcCchhhHHHHcccCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCc-ccC-CCCCCChHHHHHHHHHH
Q psy17350 440 PD----AILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLD-IQN-QDGGHCSKEDAIAALRL 513 (528)
Q Consensus 440 ~d----~ILVGHnL~fDL~~L~~~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~-Iq~-~~~~HdAlEDA~AT~eL 513 (528)
.. ..|+|+...+|..+|...-....+. . ...+.....|+.+... +|.. +.. .+..|+||.||++.+..
T Consensus 101 ~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~l---P--~~~p~~~~dlr~~~~~-~g~~~lp~~~~~~H~AL~DAR~n~~~ 174 (190)
T 4hec_A 101 IDGTDSIELWAWVGAYDHVALCQLWGPMTAL---P--PTVPRFTRELRQLWED-RGCPRMPPRPRDVHDALVDARDQLRR 174 (190)
T ss_dssp TTSSCEEEEEESSCHHHHHHHHTTTSSGGGS---C--TTSCSSCEEHHHHHHH-TTCCCCCC-----CCHHHHHHHHHHH
T ss_pred hcCCCCCEEEEecccccHHHHHHHhcccccC---C--cccchhhHHHHHHHHH-cCCCCCCCCCCCCcCcHHHHHHHHHH
Confidence 32 2599999999999996532221111 0 1112223457777654 3432 221 12479999999999999
Q ss_pred HHHHHH
Q psy17350 514 VKLKLS 519 (528)
Q Consensus 514 ~~~~L~ 519 (528)
|+.+..
T Consensus 175 ~~~~~~ 180 (190)
T 4hec_A 175 FRLITS 180 (190)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 986543
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.58 E-value=3.5e-08 Score=110.68 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=95.3
Q ss_pred eEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCCCcE
Q psy17350 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDAI 443 (528)
Q Consensus 364 ~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~d~I 443 (528)
+||+|+||+|+++..++|.-|.+++..+..++ ++.|. .++++++.|.+++.++.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~--~~~p~-----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SYRPS-----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EECGG-----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE--EEChH-----------------------HHHHHHHHHHHHHhcCCe
Confidence 58999999999987688888888875432222 22221 123455666666644789
Q ss_pred EEEcCc-hhhHHHHccc----------CC--CEeeehhhchhcCCCCCCCCHHHHHHHhh-------CCcc-----c---
Q psy17350 444 LVGQSL-NCDLHALKMM----------HP--YVIDTSVIFNTTGIRTHKPKLKMLTSHFL-------GLDI-----Q--- 495 (528)
Q Consensus 444 LVGHnL-~fDL~~L~~~----------hp--~vIDTs~L~~~~~~~~~k~sLk~La~~~L-------g~~I-----q--- 495 (528)
+||||+ .||+.+|... .+ .++||........+...+++|+.||+.|| |... .
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~ 135 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKD 135 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHH
Confidence 999999 9999998532 23 58999998765444344788999998886 4221 1
Q ss_pred --------CCCC--------------CCChHHHHHHHHHHHHHHHHcCCcCCC
Q psy17350 496 --------NQDG--------------GHCSKEDAIAALRLVKLKLSKGDLIGL 526 (528)
Q Consensus 496 --------~~~~--------------~HdAlEDA~AT~eL~~~~L~~g~~fg~ 526 (528)
.+.. .|.|.+||.+|++|+..+.++...+|+
T Consensus 136 ~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 136 DFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred HhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1111 356889999999999988887666665
No 22
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.10 E-value=5e-07 Score=84.70 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=75.6
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEeccCCcC--ccc-------c--cCCcEeecccccCCCCCCC
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKTLNEA--DKQ-------M--MHPYVIDTSVIFNTTGIRT 73 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~l~~D--aL~-------l--~Hp~i~DTa~~~~~~~~~~ 73 (528)
++++||+++++ .++. .+.+|..++.+.+. +.+||||....| .|+ + .+..++||..++..-. ..
T Consensus 63 ~~i~GIt~~~l-~~~~--~~~~v~~~~~~~l~--~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~ 136 (186)
T 2p1j_A 63 SEITGITQEML-ENKR--SIEEVLPEFLGFLE--DSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KL 136 (186)
T ss_dssp HHHHCCCHHHH-TTCC--BHHHHHHHHHHHSS--SCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CC
T ss_pred hhhcCCCHHHH-hcCC--CHHHHHHHHHHHHC--CCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hc
Confidence 46789999954 4442 35568888888887 579999999888 443 2 2447899987654221 23
Q ss_pred CCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcC
Q psy17350 74 HKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 117 (528)
Q Consensus 74 ~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g 117 (528)
.+.+|+.|++. +|.+... .|+..+||++|++||+..++++
T Consensus 137 ~~~~L~~l~~~-~gi~~~~---~H~Al~Da~~t~~l~~~l~~~~ 176 (186)
T 2p1j_A 137 RSYSLDSVVEK-LGLGPFR---HHRALDDARVTAQVFLRFVEMM 176 (186)
T ss_dssp SCCSHHHHHHH-TTCCSTT---CCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHH-cCCCCCC---CcCHHHHHHHHHHHHHHHHHHH
Confidence 47899999986 5766543 6999999999999999876653
No 23
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.97 E-value=2.1e-06 Score=80.50 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=73.0
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEeccCCcC--ccc-------ccCC------cEeecccccCCC
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKTLNEA--DKQ-------MMHP------YVIDTSVIFNTT 69 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~l~~D--aL~-------l~Hp------~i~DTa~~~~~~ 69 (528)
++++||+++++ .++. .+.+|..++.+.+. +++||||....| .|+ +..| .++||..+....
T Consensus 66 ~~i~GIt~~~l-~~~~--~~~~v~~~~~~~l~--~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~ 140 (194)
T 2gui_A 66 FGVHGIADEFL-LDKP--TFAEVADEFMDYIR--GAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM 140 (194)
T ss_dssp HHHHCCCHHHH-TTSC--CHHHHHHHHHHHHT--TSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH
T ss_pred HHhhCcCHHHH-hCCC--CHHHHHHHHHHHHC--CCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH
Confidence 56789999955 4443 34568889999887 579999998888 332 3322 579997653211
Q ss_pred CCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q psy17350 70 GIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLC 120 (528)
Q Consensus 70 ~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~ 120 (528)
. +..+.+|+.|++. +|.+.... ..|+..+||++|++||+..+++++.+
T Consensus 141 ~-p~~~~~L~~l~~~-~gi~~~~~-~~H~Al~Da~~ta~l~~~l~~~~~~~ 188 (194)
T 2gui_A 141 F-PGKRNSLDALCAR-YEIDNSKR-TLHGALLDAQILAEVYLAMTGGQTSM 188 (194)
T ss_dssp S-TTSCCSHHHHHHH-TTCCCTTC-SSCCHHHHHHHHHHHHHHHTC-----
T ss_pred c-CCCCCCHHHHHHH-cCcCCCCC-CCCChHHHHHHHHHHHHHHHhccchh
Confidence 0 1235699999987 57665431 27999999999999998776654443
No 24
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.91 E-value=1.6e-05 Score=86.90 Aligned_cols=118 Identities=12% Similarity=-0.031 Sum_probs=89.4
Q ss_pred CeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCCCc
Q psy17350 363 PLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPDA 442 (528)
Q Consensus 363 ~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~d~ 442 (528)
+.+|+|+|+.+.+.-..+++.|++-. .|+. | +| . ++...|.+|+. +.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a-~--~i----------------~------------~~l~~l~~~l~-d~ 57 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRV-H--RA----------------P------------EPYKALRDLKE-AR 57 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEE-E--EC----------------S------------SHHHHHTTCSS-BC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEE-E--Ee----------------h------------hhHHHHHHHHc-CC
Confidence 56999999999998777888877763 4432 3 11 0 25577899998 68
Q ss_pred EEEEcCchhhHHHHcccCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy17350 443 ILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKG 521 (528)
Q Consensus 443 ILVGHnL~fDL~~L~~~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~g 521 (528)
.+||||+.||+...++..+.++||........+. +++|..||++|++. + +|.+.+||.++..|+..+.++.
T Consensus 58 ~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~p~--~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 58 GLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPS--NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp STTHHHHHHHHHHTTCCCCBCCCHHHHHHHHCTT--CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeccHHHHHHcCCCCCcceeHHHHHHHhCCC--CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHHH
Confidence 8999999999993333333578998876654433 78999999999876 2 4789999999999998777654
No 25
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=97.86 E-value=4.4e-05 Score=81.23 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=83.8
Q ss_pred CCCeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCC-
Q psy17350 361 TSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLP- 439 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~- 439 (528)
....+|+|+|++........++-|.+-..++. .+|.|... ..++ ..|.+++.
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~----~lidpl~l------------~~~l-----------~~L~~lL~d 180 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQISTRTED----FIIDTLEL------------RSDM-----------YILNESLTD 180 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEEEECSSCE----EEEETTTT------------GGGG-----------GGGHHHHTC
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE----EEEEeccc------------hhhH-----------HHHHHHHcC
Confidence 35789999999987765455544444433322 23433321 0111 12334343
Q ss_pred CCcEEEEcCchhhHHHHc----ccCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCC-------------CC
Q psy17350 440 PDAILVGQSLNCDLHALK----MMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGG-------------HC 502 (528)
Q Consensus 440 ~d~ILVGHnL~fDL~~L~----~~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~-------------Hd 502 (528)
++-+-||||+.+|+.+|. +....++||.......+.. +++|..|++.|||+.+..+... +-
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~Y 258 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSY 258 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHH
Confidence 355679999999999995 2223589998876554432 4799999999999988653211 22
Q ss_pred hHHHHHHHHHHHHHHHHc
Q psy17350 503 SKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 503 AlEDA~AT~eL~~~~L~~ 520 (528)
|.+||.++++||..+..+
T Consensus 259 AA~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 259 ARDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568999999999866543
No 26
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=97.65 E-value=9.9e-06 Score=78.28 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=70.7
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcC--CcEEEeccC-CcC--ccc-------ccCC---cEeecccccCCC
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKM--DALVEIKTL-NEA--DKQ-------MMHP---YVIDTSVIFNTT 69 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~--~~IlvGH~l-~~D--aL~-------l~Hp---~i~DTa~~~~~~ 69 (528)
++++||+++++.....+.+.++|...+.+.++.. +.+||||.. ..| .|+ +..| .++||..++..-
T Consensus 77 ~~i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~ 156 (238)
T 1y97_A 77 SEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGL 156 (238)
T ss_dssp HHHHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHH
T ss_pred HHHhCCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHH
Confidence 4678999985421111222134777888888753 279999987 888 332 2222 479997653211
Q ss_pred --------CCC-CCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 70 --------GIR-THKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 70 --------~~~-~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
..+ ....+|..|+++++|.+... .|+..+||+++++|++..+++
T Consensus 157 ~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 157 DRAHSHGTRARGRQGYSLGSLFHRYFRAEPSA---AHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp HHHC----------CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHHH
T ss_pred HhccCccccCCCCCCCCHHHHHHHHhCCCCcc---CccHHHHHHHHHHHHHHHHHH
Confidence 011 24789999999888987654 699999999999999876654
No 27
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.65 E-value=2.8e-05 Score=73.10 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=79.2
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCC-----cEEEeccCCcC-c--c-------cccCC----cEeecccc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMD-----ALVEIKTLNEA-D--K-------QMMHP----YVIDTSVI 65 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~-----~IlvGH~l~~D-a--L-------~l~Hp----~i~DTa~~ 65 (528)
+++.||+++++ .++. .+.+|..++.+.+.+.. .++|||....| . | ++..| ..+||..+
T Consensus 69 ~~i~GIt~~~l-~~~~--~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l 145 (204)
T 1w0h_A 69 ISLTGITQDQV-DRAD--TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKS 145 (204)
T ss_dssp HHHHCCCHHHH-HTSB--CHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHH
T ss_pred HHHhCCCHHHH-hCCC--CHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHH
Confidence 56789999954 4442 35568888888887532 36999998888 3 3 24455 47999877
Q ss_pred cCC--CCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCC
Q psy17350 66 FNT--TGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCST 122 (528)
Q Consensus 66 ~~~--~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~~~ 122 (528)
+.. +.+ ....+|..|++. +|.+.+.. .|+..+||++|++||+..++++..+..
T Consensus 146 ~~~~~~~~-~~~~~L~~l~~~-~gi~~~~~--~H~Al~Da~~ta~l~~~l~~~~~~~~i 200 (204)
T 1w0h_A 146 YGNFYKVP-RSQTKLTIMLEK-LGMDYDGR--PHCGLDDSKNIARIAVRMLQDGCELRI 200 (204)
T ss_dssp HHHHHTCC-GGGCSHHHHHHH-TTCCCCSC--TTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHhCCC-CccchHHHHHHH-cCCCCCCC--ccCcHHHHHHHHHHHHHHHHCCCeeee
Confidence 642 211 124789999987 57766532 699999999999999998888766553
No 28
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.64 E-value=1.6e-05 Score=73.63 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=64.2
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcC----CcEEEeccCCcC--cccccC--------CcEeecccccCCCC
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKM----DALVEIKTLNEA--DKQMMH--------PYVIDTSVIFNTTG 70 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~----~~IlvGH~l~~D--aL~l~H--------p~i~DTa~~~~~~~ 70 (528)
+.++||++++ +.++. .+++|..++.+.+++. +.+||||....| .|+-.. ..++|++
T Consensus 65 ~~itGIt~~~-l~~~~--~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~------- 134 (180)
T 2igi_A 65 HTASGLVERV-KASTM--GDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVS------- 134 (180)
T ss_dssp HHHTTHHHHH-HHCCC--CHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETH-------
T ss_pred HHHcCCCHHH-HhcCC--CHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHH-------
Confidence 3458999995 44443 3456888999888742 369999999888 555332 2345521
Q ss_pred CCCCCccHHHHHHHHhCc---cccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 71 IRTHKPKLKMLTSHFLGL---DIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 71 ~~~~~~SLk~La~~~L~~---~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
+|+.|++.++.. .|.. ...|+..+||+||++|++..+++
T Consensus 135 ------tl~~l~~~~~p~~~~~i~~-~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 135 ------TLKELARRWKPEILDGFTK-QGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp ------HHHHHHHHHCGGGGGGSCC-CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhChHhhhCCCC-cCCcCcHHHHHHHHHHHHHHHHH
Confidence 455566655421 3432 24899999999999999988765
No 29
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.58 E-value=1.3e-05 Score=77.02 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=69.9
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhc-------CCcEEEeccCCcC--ccc-------ccC-C----cEeecc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRK-------MDALVEIKTLNEA--DKQ-------MMH-P----YVIDTS 63 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~-------~~~IlvGH~l~~D--aL~-------l~H-p----~i~DTa 63 (528)
+++.||+++++..++.. +.+|...+.+.++. .+.+||||....| .|+ +.. | .++||.
T Consensus 87 ~~ihGIt~e~~v~~~~~--~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~ 164 (224)
T 2f96_A 87 LEFTGIKLDHPLRMAVQ--EEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTA 164 (224)
T ss_dssp HHHHTCCTTCTTCCCBC--HHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHH
T ss_pred HHHhCCCHHHHHhcCCC--HHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHH
Confidence 46789999865555432 33455555554431 2579999998778 332 321 2 479998
Q ss_pred cccCCCCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 64 VIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 64 ~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
.++....+ +.+|+.|++. +|.++.. ...|+..+||++|++||+..+++
T Consensus 165 ~l~~~~~~---~~~L~~l~~~-~gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 165 TLAGLAYG---QTVLAKACQA-AGMEFDN-REAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp HHHHHHHS---CCSHHHHHHH-TTCCCCT-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CCCHHHHHHH-cCCCcCC-CCCCChHHHHHHHHHHHHHHHHH
Confidence 76542111 3589999987 5777642 13799999999999999876654
No 30
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=97.57 E-value=1.9e-05 Score=76.10 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=76.8
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEeccC--------CcC--c-cc-------ccCC----cEeec
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKTL--------NEA--D-KQ-------MMHP----YVIDT 62 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~l--------~~D--a-L~-------l~Hp----~i~DT 62 (528)
++++||+++++ .++. .+++|..++.+.+++ .+||||.. ..| . |+ +..| ..+|+
T Consensus 88 ~~ltGIt~~~v-~~a~--~~~~v~~~f~~~l~~--~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~ 162 (224)
T 2xri_A 88 TELTGIIQAMV-DGQP--SLQQVLERVDEWMAK--EGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINL 162 (224)
T ss_dssp HHHHCCCHHHH-TTCC--CHHHHHHHHHHHHHH--TTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEH
T ss_pred HHHhCcCHHHH-cCCC--CHHHHHHHHHHHHhh--cccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeH
Confidence 56789999954 4443 355688888888874 68899988 778 3 42 3444 47896
Q ss_pred ccccCCCCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCC
Q psy17350 63 SVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCST 122 (528)
Q Consensus 63 a~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~~~ 122 (528)
...+...++...+.+|..|++ .+|.+.+. ..|+..+||++|++|++..+++|..+..
T Consensus 163 ~~~~~~~~~~~p~~~L~~l~~-~~gi~~~~--~~H~Al~DA~~ta~l~~~l~~~g~~~~i 219 (224)
T 2xri_A 163 KKAYSFAMGCWPKNGLLDMNK-GLSLQHIG--RPHSGIDDCKNIANIMKTLAYRGFIFKQ 219 (224)
T ss_dssp HHHHHHHHTSCCTTTHHHHHH-HTTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhccCCCCCHHHHHH-HcCCCCCC--CCcChHHHHHHHHHHHHHHHHcCCEEee
Confidence 544432222112479999998 56766643 2699999999999999998888766553
No 31
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.53 E-value=0.00031 Score=67.69 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHhcCC-CCcEEEEcCchhhHHHHcccC----CCEeeehhhchh-cCCC-CCCCCHHHHHHHhhCCcc-cC------C--
Q psy17350 434 LSELLP-PDAILVGQSLNCDLHALKMMH----PYVIDTSVIFNT-TGIR-THKPKLKMLTSHFLGLDI-QN------Q-- 497 (528)
Q Consensus 434 L~~~i~-~d~ILVGHnL~fDL~~L~~~h----p~vIDTs~L~~~-~~~~-~~k~sLk~La~~~Lg~~I-q~------~-- 497 (528)
|.+|+. ++-+-|||++.+|+..|+..+ ..++|+..++.. .+.+ ....+|+.|++++||+++ .. .
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 344443 466789999999999996543 369999877643 2321 346899999999999999 21 0
Q ss_pred ----CCCCChHHHHHHHHHHHHHHHH
Q psy17350 498 ----DGGHCSKEDAIAALRLVKLKLS 519 (528)
Q Consensus 498 ----~~~HdAlEDA~AT~eL~~~~L~ 519 (528)
++-+-|..||.++.+||....+
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0234578999999999986543
No 32
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.48 E-value=0.00024 Score=67.23 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=59.5
Q ss_pred HHHhcCC-CCcEEEEcCchhhHHHHcc----cCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCC---------C
Q psy17350 433 ILSELLP-PDAILVGQSLNCDLHALKM----MHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQ---------D 498 (528)
Q Consensus 433 ~L~~~i~-~d~ILVGHnL~fDL~~L~~----~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~---------~ 498 (528)
.|.+++. ++.+.||||+.+|+.+|.. ....++|...++...-.+...++|+.|++.|||..+..+ .
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~ 166 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSN 166 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTS
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCC
Confidence 4555555 3457899999999999964 223489944443322223457899999999988776221 0
Q ss_pred ------CCCChHHHHHHHHHHHHHHHHcCC
Q psy17350 499 ------GGHCSKEDAIAALRLVKLKLSKGD 522 (528)
Q Consensus 499 ------~~HdAlEDA~AT~eL~~~~L~~g~ 522 (528)
..+-|..||.++.+|+..+.++..
T Consensus 167 ~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 167 FPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011256899999999987766554
No 33
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.40 E-value=8.6e-05 Score=74.89 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=79.2
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCC-----cEEEeccCCcC-c--c-------cccCC----cEeecccc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMD-----ALVEIKTLNEA-D--K-------QMMHP----YVIDTSVI 65 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~-----~IlvGH~l~~D-a--L-------~l~Hp----~i~DTa~~ 65 (528)
+++.||+++++ .++. .+.+|...+.+.+.+.. +++|||....| . | ++..| .++||..+
T Consensus 137 ~~ihGIt~e~v-~~ap--~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l 213 (299)
T 1zbh_A 137 ISLTGITQDQV-DRAD--TFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKS 213 (299)
T ss_dssp HHHHCCCHHHH-HTSB--CHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHH
T ss_pred HHHhCCCHHHH-hcCC--CHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHH
Confidence 56789999954 4442 35568888888887631 59999998888 3 2 34455 47999877
Q ss_pred cCCCCC-CCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCCC
Q psy17350 66 FNTTGI-RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCS 121 (528)
Q Consensus 66 ~~~~~~-~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~~ 121 (528)
++.-.+ +....+|..|++. +|...+.. .|+..+||+||++||+..++++..+.
T Consensus 214 ~~~~~~~~~~~~~L~~l~~~-~gi~~~g~--~H~Al~DA~ata~l~~~l~~~~~~~~ 267 (299)
T 1zbh_A 214 YGNFYKVPRSQTKLTIMLEK-LGMDYDGR--PNCGLDDSKNIARIAVRMLQDGCELR 267 (299)
T ss_dssp HHHHHTCCGGGCSHHHHHHH-TTCCCCSC--TTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCCccHHHHHHH-cCCCCCCC--CCChHHHHHHHHHHHHHHHHhCCcCC
Confidence 653211 1224799999986 57665532 69999999999999998888765443
No 34
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.34 E-value=3.8e-05 Score=75.29 Aligned_cols=112 Identities=9% Similarity=0.024 Sum_probs=76.0
Q ss_pred ceeeccCCCCCCchhh-hhhHHHHHHHHHHHHhcC--CcEEEecc-CCcC--cc-------ccc---CC-cEeecccccC
Q psy17350 5 LEVLGLNPGGVLLNAY-FKMNARQIKRLENKKRKM--DALVEIKT-LNEA--DK-------QMM---HP-YVIDTSVIFN 67 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~-~~~~~~v~~~l~~l~~~~--~~IlvGH~-l~~D--aL-------~l~---Hp-~i~DTa~~~~ 67 (528)
++++||+++++ .++- +.+.++|..++.+.+.+. .++||||. +..| .| ++. .+ .++||..++.
T Consensus 82 ~~i~GIt~~~l-~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r 160 (242)
T 3mxm_B 82 SEITGLSKAEL-EVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALK 160 (242)
T ss_dssp HHHHCCCHHHH-HHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHH
T ss_pred HHhcCCCHHHH-HhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHH
Confidence 56899999954 3331 111125778888888742 17999998 6888 22 222 22 5799987643
Q ss_pred C------CC--CCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q psy17350 68 T------TG--IRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLC 120 (528)
Q Consensus 68 ~------~~--~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~ 120 (528)
. +. ....+.+|..|+++++|..... .|+...||+||.+|+++..+.-..|
T Consensus 161 ~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~ata~l~~~~~~~~~~~ 218 (242)
T 3mxm_B 161 ALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGDDLTLLSICQWKPQALLQW 218 (242)
T ss_dssp HHHHHHCC------CCCSHHHHHHHHHSSCCSS---TTSHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC---CcChHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1235789999999999998754 5999999999999998665544444
No 35
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.27 E-value=0.00037 Score=79.12 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCeEEEeeceec---CCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhc
Q psy17350 361 TSPLYGLDCEMCK---TSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSEL 437 (528)
Q Consensus 361 ~~~~vALDcEmtg---t~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~ 437 (528)
..+++++|+||++ .++..++|+.|++++.++..++. .+ .|..+.+... ++-.++...+.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t--~~-------------~i~~~~v~~~-~~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT--WK-------------KIDLPYVDVV-STEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE--SS-------------CCCCSSEEEC-SCHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe--ec-------------cccccceEEc-CCHHHHHHHHHHH
Confidence 4689999999998 45567899999988765543321 01 1222234442 5666777777776
Q ss_pred CCC--CcEEEEcCc-hhhHHHHcc-------cC-----------------------CC-EeeehhhchhcCCCCCCCCHH
Q psy17350 438 LPP--DAILVGQSL-NCDLHALKM-------MH-----------------------PY-VIDTSVIFNTTGIRTHKPKLK 483 (528)
Q Consensus 438 i~~--d~ILVGHnL-~fDL~~L~~-------~h-----------------------p~-vIDTs~L~~~~~~~~~k~sLk 483 (528)
+.. -+||||||. .||+.+|.. .. .+ ++|+..+.+... ....++|+
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~sysL~ 276 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLPTYTLE 276 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCSCCCHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcCcCCHH
Confidence 642 359999997 789987731 11 01 456666554322 23478999
Q ss_pred HHHHHhhCCcccCC---------CCC-------CChHHHHHHHHHHHHHHH
Q psy17350 484 MLTSHFLGLDIQNQ---------DGG-------HCSKEDAIAALRLVKLKL 518 (528)
Q Consensus 484 ~La~~~Lg~~Iq~~---------~~~-------HdAlEDA~AT~eL~~~~L 518 (528)
.+|+++||..-..= ..+ .-.+.||..|+.|+.+.+
T Consensus 277 ~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 277 AVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999853210 001 113679999999876543
No 36
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.27 E-value=0.00011 Score=70.87 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=71.1
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhc-------CCcEEEeccCCcC--cc-------cccC-C----cEeecc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRK-------MDALVEIKTLNEA--DK-------QMMH-P----YVIDTS 63 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~-------~~~IlvGH~l~~D--aL-------~l~H-p----~i~DTa 63 (528)
+++.||+++++..++.. +.+|..++...++. .+.++|||....| .| ++.. | .++||.
T Consensus 95 ~~i~GIt~e~~v~~~~~--~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~ 172 (235)
T 3v9w_A 95 LAFNGIDPNDPDRGAVS--GYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTA 172 (235)
T ss_dssp HHHHCCCTTCGGGCCBC--HHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHH
T ss_pred HHHhCCCHHHHHhcCCC--HHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhH
Confidence 45789999844444432 34466677666642 3689999998888 43 3322 2 478998
Q ss_pred cccCCCCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 64 VIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 64 ~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
.+...-.+ ..+|..|++.+ |.++..+ ..|+..+||++|++||...+++
T Consensus 173 ~la~~~~p---~~~L~~l~~~~-gi~~~~~-~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 173 ALAGLALG---QTVLSKACQTA-GMDFDST-QAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp HHHHHHHS---CCSHHHHHHHH-TCCCCTT-TTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHc-CCCCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 77542111 25999999975 6666431 3799999999999999876653
No 37
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.26 E-value=0.00015 Score=75.21 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=79.5
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCC-----cEEEeccCCcC-c--c-------cccCC----cEeecccc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMD-----ALVEIKTLNEA-D--K-------QMMHP----YVIDTSVI 65 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~-----~IlvGH~l~~D-a--L-------~l~Hp----~i~DTa~~ 65 (528)
+++.||+++++ .++. .+.+|...+.+.+.+.. .++|||....| . | ++..| .++||..+
T Consensus 187 t~ihGIT~e~v-~~ap--~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l 263 (349)
T 1zbu_A 187 ISLTGITQDQV-DRAD--TFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKS 263 (349)
T ss_dssp HHHHCCCHHHH-HTSE--EHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHH
T ss_pred HHHhCCCHHHH-hCCC--CHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHH
Confidence 56789999954 4442 35568888888887531 59999998888 3 2 34455 47999887
Q ss_pred cCCCCC-CCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCCC
Q psy17350 66 FNTTGI-RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCS 121 (528)
Q Consensus 66 ~~~~~~-~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~~ 121 (528)
++.-.+ +....+|..|++. +|...+.. .|+.+.||+||++||+..++++..+.
T Consensus 264 ~~~~~~~~~~~~~L~~l~~~-~gi~~~g~--~HrAl~DA~ata~ll~~ll~~~~~~~ 317 (349)
T 1zbu_A 264 YGNFYKVPRSQTKLTIMLEK-LGMDYDGR--PHCGLDDSKNIARIAVRMLQDGCELR 317 (349)
T ss_dssp HHHHHTCCGGGGSHHHHHHH-TTCCCCSC--TTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCCCCCHHHHHHH-cCCCCCCC--CCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 653211 1224799999986 57766532 69999999999999998888764443
No 38
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=97.22 E-value=0.0043 Score=62.66 Aligned_cols=155 Identities=13% Similarity=0.093 Sum_probs=98.0
Q ss_pred CCCCeEEEeeceecCCCC---------------------cCcEEEEEEE--EeCCcE-----E--EEEEEcCCCCCCCC-
Q psy17350 360 PTSPLYGLDCEMCKTSND---------------------QNELTRVTLV--DEQENV-----V--YESLVKPYNPITNY- 408 (528)
Q Consensus 360 ~~~~~vALDcEmtgt~~g---------------------~~eLirIs~V--d~~G~v-----i--~d~LVkP~~~I~dy- 408 (528)
+..+|||||+|++|+... ...|+++++. +.+|+. + |+-.+.|...+-.-
T Consensus 32 ~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~ 111 (285)
T 4gmj_B 32 RKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQD 111 (285)
T ss_dssp HHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHH
T ss_pred hcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHH
Confidence 356899999999997432 0136666654 555542 2 44445554432111
Q ss_pred ce---eecCCChhhhcccCCCHHHHHHHHHh---cCCCCcEEEEcCchhhHHHHc--------------------ccCCC
Q psy17350 409 LT---AYSGITRALLAPVATRLEHVQKILSE---LLPPDAILVGQSLNCDLHALK--------------------MMHPY 462 (528)
Q Consensus 409 ~T---~isGIT~e~L~~a~p~l~dV~~~L~~---~i~~d~ILVGHnL~fDL~~L~--------------------~~hp~ 462 (528)
.. +-+||.-......+-...+..+.+.. .+.++...|.|+-.+|+.+|- ...|.
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~ 191 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSC
T ss_pred HHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCch
Confidence 11 22777766665445555544444443 445566777776679997662 12367
Q ss_pred EeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHH
Q psy17350 463 VIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLS 519 (528)
Q Consensus 463 vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~ 519 (528)
+.||..|...-. ..+.+|..||+. ||++- .+ ..|.|-.||..|+..|.++.+
T Consensus 192 vYD~K~l~~~~~--~l~ggL~~lA~~-L~v~r-~g-~~HqAGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 192 IYDVKYLMKSCK--NLKGGLQEVAEQ-LELER-IG-PQHQAGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp EEEHHHHGGGST--TCCSCHHHHHHH-TTCCC-CS-CTTSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcc--ccCChHHHHHHh-CCCCC-CC-CCCcchhHHHHHHHHHHHHHH
Confidence 899988876532 235689999997 67763 22 479999999999999986653
No 39
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.20 E-value=0.0032 Score=65.67 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCeEEEeeceecC---CC--CcCcEEEEEEEEeCCcE--EEEEEEcC-CCCCCCCce-------eec--CCChh---hh-
Q psy17350 362 SPLYGLDCEMCKT---SN--DQNELTRVTLVDEQENV--VYESLVKP-YNPITNYLT-------AYS--GITRA---LL- 420 (528)
Q Consensus 362 ~~~vALDcEmtgt---~~--g~~eLirIs~Vd~~G~v--i~d~LVkP-~~~I~dy~T-------~is--GIT~e---~L- 420 (528)
.+++++|+||++. ++ ..++|+.|++++..+.. +| .+|++ .....++.. .++ .-.+. .+
T Consensus 106 l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 106 VRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp CCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred eEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEE-EEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 5799999999971 11 14699999999875553 23 23433 222111110 000 00111 11
Q ss_pred -cccCCCHHHHHHHHHhcCC--CCcEEEEcCc-hhhHHHH--------cc--c-----CC--------------------
Q psy17350 421 -APVATRLEHVQKILSELLP--PDAILVGQSL-NCDLHAL--------KM--M-----HP-------------------- 461 (528)
Q Consensus 421 -~~a~p~l~dV~~~L~~~i~--~d~ILVGHnL-~fDL~~L--------~~--~-----hp-------------------- 461 (528)
... .+-.++...+.+++. .-.||||||. .||+.+| ++ . ..
T Consensus 185 v~~~-~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~ 263 (388)
T 1noy_A 185 YMPF-DNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSID 263 (388)
T ss_dssp EEEE-SCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEET
T ss_pred EEEc-CCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEc
Confidence 122 456777777777762 2479999998 7899665 11 0 00
Q ss_pred -C-EeeehhhchhcCCC-CCCCCHHHHHHHhhCCcccCCCCCC-C----------------hHHHHHHHHHHHHH
Q psy17350 462 -Y-VIDTSVIFNTTGIR-THKPKLKMLTSHFLGLDIQNQDGGH-C----------------SKEDAIAALRLVKL 516 (528)
Q Consensus 462 -~-vIDTs~L~~~~~~~-~~k~sLk~La~~~Lg~~Iq~~~~~H-d----------------AlEDA~AT~eL~~~ 516 (528)
+ ++|+..+++..... ...++|+.+|+++||..-. .| . .+.||..|++|+.+
T Consensus 264 GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~----d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 264 GVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL----PYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp TSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC----CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC----CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 45665555542122 4579999999999987522 13 2 47899999999875
No 40
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.16 E-value=0.0001 Score=69.54 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=63.8
Q ss_pred eeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcE------EEeccCCcC--cccccCC--------cEeecccccCCC
Q psy17350 6 EVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDAL------VEIKTLNEA--DKQMMHP--------YVIDTSVIFNTT 69 (528)
Q Consensus 6 ~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~I------lvGH~l~~D--aL~l~Hp--------~i~DTa~~~~~~ 69 (528)
.++||++++ +.++. .+++|..++.+.+++ .+ ||||....| .|+-..+ ..+||
T Consensus 70 ~itGIt~~~-l~~~p--~~~ev~~~~~~~l~~--~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~------- 137 (194)
T 2gbz_A 70 RRSGLWQRV-LDSQV--THAQAEAQTVAFLGE--WIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDV------- 137 (194)
T ss_dssp HHHTHHHHH-HHCCC--CHHHHHHHHHHHHTT--TCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEH-------
T ss_pred HhhCCCHHH-HhcCC--CHHHHHHHHHHHHHH--hCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccH-------
Confidence 349999995 44443 355688888888874 55 999999888 4443322 34444
Q ss_pred CCCCCCccHHHHHHHHhCc---cccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 70 GIRTHKPKLKMLTSHFLGL---DIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 70 ~~~~~~~SLk~La~~~L~~---~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
.+|+.|++.++.. .|... ..|+..+||+||++|+++.+++
T Consensus 138 ------~~l~~l~~~~~p~~~~~i~~~-~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 138 ------STIKELARRWAPAVASGFAKS-SAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp ------HHHHHHHHHHCGGGGTTCCCC-SCCSHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHhCHHHHhCCCCC-CCcccHHHHHHHHHHHHHHHHH
Confidence 2677777776521 24332 3799999999999999988765
No 41
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.14 E-value=0.00011 Score=75.20 Aligned_cols=112 Identities=9% Similarity=0.006 Sum_probs=76.0
Q ss_pred ceeeccCCCCCCchhhhhhH-HHHHHHHHHHHhcCC--cEEEecc-CCcC--cc-------cccCC----cEeecccccC
Q psy17350 5 LEVLGLNPGGVLLNAYFKMN-ARQIKRLENKKRKMD--ALVEIKT-LNEA--DK-------QMMHP----YVIDTSVIFN 67 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~-~~v~~~l~~l~~~~~--~IlvGH~-l~~D--aL-------~l~Hp----~i~DTa~~~~ 67 (528)
+++.||+++++ .++-...+ ++|..++.+.+++.+ ++||||- ...| .| .+.-+ .++||..++.
T Consensus 82 ~~IhGIT~e~l-~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r 160 (314)
T 3u3y_B 82 SEITGLSKAEL-EVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALK 160 (314)
T ss_dssp HHHHSCCHHHH-HHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHH
T ss_pred HHhcCCCHHHH-HhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHH
Confidence 46889999954 33310113 357788888887422 7999999 8888 22 22221 3799976432
Q ss_pred --------CCCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCC
Q psy17350 68 --------TTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLC 120 (528)
Q Consensus 68 --------~~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~ 120 (528)
...+...+.+|..|+++++|..... .|+...||+||.+||++..++-..|
T Consensus 161 ~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~---aHrAl~DA~ata~lf~~l~~~~l~~ 218 (314)
T 3u3y_B 161 ALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGHVLTLLSICQWKPQALLQW 218 (314)
T ss_dssp HHHTTC-------CCCCSHHHHHHHHHSSCCSC---SSSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHhCccccccCCCCCHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111235789999999999998764 5999999999999998766544444
No 42
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.01 E-value=0.0034 Score=64.99 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCC-C
Q psy17350 362 SPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLP-P 440 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~-~ 440 (528)
..++++|+|+.........++-|.+-. .+.+ | ++.|. .+ .. ...|.+++. +
T Consensus 22 ~~~va~D~E~~~~~~~~~~l~liqla~-~~~~-~--lid~~-----------~l-----~~--------~~~L~~ll~d~ 73 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYYPQLGLIQLFD-GEHL-A--LIDPL-----------GI-----TD--------WSPLKAILRDP 73 (375)
T ss_dssp SSEEEEEEEEECCSCSSCEEEEEEEEC-SSCE-E--EECGG-----------GC-----SC--------CHHHHHHHHCT
T ss_pred CCeEEEEeeecCCCcCCCceEEEEEec-CCcE-E--EEeCC-----------CC-----CC--------hHHHHHHHcCC
Confidence 478999999998754323444444332 2222 1 23321 11 01 123445454 3
Q ss_pred CcEEEEcCchhhHHHHcc----cCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCC-------C------CCh
Q psy17350 441 DAILVGQSLNCDLHALKM----MHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-------G------HCS 503 (528)
Q Consensus 441 d~ILVGHnL~fDL~~L~~----~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~-------~------HdA 503 (528)
+.+.||||+.+|+.+|.. ....++||.......+. ...++|..|++.|||..+..+.. . +-|
T Consensus 74 ~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YA 152 (375)
T 1yt3_A 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYA 152 (375)
T ss_dssp TSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTC-CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCC-CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHH
Confidence 456899999999999953 22368999887655443 45789999999999987754311 0 114
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy17350 504 KEDAIAALRLVKLKLSK 520 (528)
Q Consensus 504 lEDA~AT~eL~~~~L~~ 520 (528)
..||.++.+|+..+.++
T Consensus 153 a~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 153 AADVWYLLPITAKLMVE 169 (375)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999998876544
No 43
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=96.91 E-value=0.0017 Score=68.56 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHhcCC-CCcEEEEcCchhhHHHHcc----cCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCC--------
Q psy17350 434 LSELLP-PDAILVGQSLNCDLHALKM----MHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGG-------- 500 (528)
Q Consensus 434 L~~~i~-~d~ILVGHnL~fDL~~L~~----~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~-------- 500 (528)
|.+++. ++.+-|||++.+|+.+|.. ....++||.......+.. +++|..|++.|||..+..+...
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL 228 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--RHSLAYLLENFANFKTSKKYQLADWRIRPL 228 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--CCSHHHHHHHHSCCCCCCTTTTSCTTCSSC
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--ccCHHHHHHHHcCCCCCccccccCCCCCCC
Confidence 444454 3456799999999999954 223499998876554432 6899999999999877542110
Q ss_pred -----CChHHHHHHHHHHHHHHHHc
Q psy17350 501 -----HCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 501 -----HdAlEDA~AT~eL~~~~L~~ 520 (528)
+-|..||.++.+|+..+.++
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11458999999998766544
No 44
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=96.81 E-value=0.00049 Score=75.98 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=85.9
Q ss_pred eEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCC-CCc
Q psy17350 364 LYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLP-PDA 442 (528)
Q Consensus 364 ~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~-~d~ 442 (528)
-.++|+|+.+.++...+++.|++-... +. .||.+.. .++...|.+++. ++.
T Consensus 31 ~~aldtE~~~~~~~~a~Lvgisla~~~-~a---~yIp~~~------------------------~~~l~~Lk~lLed~~i 82 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVGIAVVNEH-GR---FFLRPET------------------------ALADPQFVAWLGDETK 82 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCEEEEEETT-EE---EEECHHH------------------------HTTCHHHHHHHTCTTS
T ss_pred CcEEEEEEcCCccCcccEEEEEEEcCC-ce---EEEccch------------------------hhHHHHHHHHHhCCCC
Confidence 468999999999877888888776533 22 2332110 112244556554 356
Q ss_pred EEEEcCchhhHHHHccc---CC-CEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCC-----CC-----------CCC
Q psy17350 443 ILVGQSLNCDLHALKMM---HP-YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQ-----DG-----------GHC 502 (528)
Q Consensus 443 ILVGHnL~fDL~~L~~~---hp-~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~-----~~-----------~Hd 502 (528)
..||||+.+|+.+|+.. .+ .+.||........+....++|+.||++|||..+... .+ .+.
T Consensus 83 ~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~Y 162 (592)
T 3pv8_A 83 KKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEH 162 (592)
T ss_dssp EEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHH
T ss_pred eEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHH
Confidence 89999999999999642 22 478998875544333346899999999999886421 00 123
Q ss_pred hHHHHHHHHHHHHHHHHc
Q psy17350 503 SKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 503 AlEDA~AT~eL~~~~L~~ 520 (528)
|.+||.++..|+..+.++
T Consensus 163 Aa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 163 LVRKAAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568999999998766543
No 45
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=96.81 E-value=0.00019 Score=72.86 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=74.4
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEeccC------CcCc---c-------cccCC----cEeeccc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKTL------NEAD---K-------QMMHP----YVIDTSV 64 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~l------~~Da---L-------~l~Hp----~i~DTa~ 64 (528)
++++||+++++ .++. .+++|..++.+.+.+ .++|||.. ..|. | ++..| ..+||..
T Consensus 79 ~~ltGIt~e~v-~~ap--~~~evl~~f~~~l~~--~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~ 153 (308)
T 3cg7_A 79 VDFTGIPQRSI-DTAD--TFDVVYEQFQQWLIT--LGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYK 153 (308)
T ss_dssp HHHHCCCHHHH-HTSC--BHHHHHHHHHHHHHH--HCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHH
T ss_pred HHHcCCCHHHH-hcCC--CHHHHHHHHHHHHHh--CCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHH
Confidence 56889999954 4443 355688888888874 55677765 5561 2 34445 3699987
Q ss_pred ccCC--C--C-C-CCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHcCCCCC
Q psy17350 65 IFNT--T--G-I-RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCS 121 (528)
Q Consensus 65 ~~~~--~--~-~-~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~g~~~~ 121 (528)
++.. + . + ...+.+|..|++ ++|...+.. .|+.++||+++++|++..++++....
T Consensus 154 l~~~~~~~~~~~~~~~~~~L~~l~~-~~gi~~~~~--~HrAl~DA~ata~l~~~l~~~~~~~~ 213 (308)
T 3cg7_A 154 IFTNEMDRMGPKELSATTNIGKMNE-YYDLPTIGR--AHDAMDDCLNIATILQRMINMGAKVT 213 (308)
T ss_dssp HHHHHHHHHCCCCCCCCSHHHHHHH-HTTCCCCSC--TTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhccccccccccCcCHHHHHH-HcCCCCCCC--CcCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7532 1 1 0 123679999995 568776543 59999999999999998887764443
No 46
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.38 E-value=0.026 Score=64.71 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=90.2
Q ss_pred CCCCeEEEeece-ecC---CCC----cCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHH
Q psy17350 360 PTSPLYGLDCEM-CKT---SND----QNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQ 431 (528)
Q Consensus 360 ~~~~~vALDcEm-tgt---~~g----~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~ 431 (528)
+..+++++|+|| ++. -|. .++|+.|++++.+|..-+ .+++|... ..-.+.+.| ..+... ++-.++.
T Consensus 188 p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~~---~~v~~~-~~E~~LL 261 (847)
T 1s5j_A 188 PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLDG---ISVERF-NTEYELL 261 (847)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEETT---EEEEEE-SSHHHHH
T ss_pred CCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCCC---CeEEEe-CCHHHHH
Confidence 456899999999 643 121 368999999876664321 24444321 111122222 234443 5788899
Q ss_pred HHHHhcCCCCcEEEEcCc-hhhHHHHcc--c-C-------C--------------CEeeehhhchh-------cCCCCCC
Q psy17350 432 KILSELLPPDAILVGQSL-NCDLHALKM--M-H-------P--------------YVIDTSVIFNT-------TGIRTHK 479 (528)
Q Consensus 432 ~~L~~~i~~d~ILVGHnL-~fDL~~L~~--~-h-------p--------------~vIDTs~L~~~-------~~~~~~k 479 (528)
.++.+++..-.+|||||. .||+.+|.. . | | ..+|....+.. .......
T Consensus 262 ~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~s 341 (847)
T 1s5j_A 262 GRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNE 341 (847)
T ss_dssp HHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSS
T ss_pred HHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccccc
Confidence 999998876679999997 789988731 0 1 1 12454443321 1123357
Q ss_pred CCHHHHHHHhhCCcccC--CCC--------CCChHHHHHHHHHHH
Q psy17350 480 PKLKMLTSHFLGLDIQN--QDG--------GHCSKEDAIAALRLV 514 (528)
Q Consensus 480 ~sLk~La~~~Lg~~Iq~--~~~--------~HdAlEDA~AT~eL~ 514 (528)
++|+.+|+.+||..-.. ..- .+-.+.||..|++|+
T Consensus 342 ysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 342 YNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999875221 000 011367999999985
No 47
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=96.30 E-value=0.0019 Score=69.69 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=68.2
Q ss_pred ceeeccCCCCCCchhhhhhHHHHHHHHHHHHhcCCcEEEecc-CCcC--ccc-------c---cC-----CcEeeccccc
Q psy17350 5 LEVLGLNPGGVLLNAYFKMNARQIKRLENKKRKMDALVEIKT-LNEA--DKQ-------M---MH-----PYVIDTSVIF 66 (528)
Q Consensus 5 ~~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~~~~IlvGH~-l~~D--aL~-------l---~H-----p~i~DTa~~~ 66 (528)
..++||+++++..... ...+|..++.+.+...++++|||. ...| .|+ + .+ ...+||..+.
T Consensus 64 ~~IhGIT~e~l~~ap~--~~~evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~ 141 (482)
T 2qxf_A 64 VLITGITPQEARAKGE--NEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVM 141 (482)
T ss_dssp HHHHCCCHHHHHHHCB--CHHHHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHH
T ss_pred HHHhCCCHHHHhcCCC--CHHHHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHH
Confidence 4689999995433222 335578888888874468999997 8888 432 1 11 2356775542
Q ss_pred ----CCCC-C--------CCCCccHHHHHHHHhCccccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 67 ----NTTG-I--------RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 67 ----~~~~-~--------~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
+... + .....+|..|++. +|.+.. ..|+...||+||++|++...++
T Consensus 142 r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~-~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 142 RACYALRPEGINWPENDDGLPSFRLEHLTKA-NGIEHS---NAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHHCCTTSCCCBCTTSSBCCCHHHHHHH-TTCCCC------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCcccccCCCCCCHHHHHHH-cCCCCC---CCCCHHHHHHHHHHHHHHHHHh
Confidence 2110 0 1135689999886 476653 2699999999999999876654
No 48
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=96.08 E-value=0.082 Score=54.44 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=99.7
Q ss_pred CCCCCeEEEeeceecCCCCc---------------------CcEEEEE--EEEeCCcE-----E--EEEEEcCCCCCCCC
Q psy17350 359 TPTSPLYGLDCEMCKTSNDQ---------------------NELTRVT--LVDEQENV-----V--YESLVKPYNPITNY 408 (528)
Q Consensus 359 ~~~~~~vALDcEmtgt~~g~---------------------~eLirIs--~Vd~~G~v-----i--~d~LVkP~~~I~dy 408 (528)
-+..+|||||+|+.|...+. -.|++++ +.|.+|+. . |+-........-.-
T Consensus 42 i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~ 121 (333)
T 2p51_A 42 IERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAP 121 (333)
T ss_dssp TTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCH
T ss_pred HhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccCH
Confidence 45689999999999986321 1245555 55666653 2 33332222111000
Q ss_pred -c---eeecCCChhhhcccCCCHHHHHHHHHh---cCCCCcEEEEcCchhhHHHHc--------------------ccCC
Q psy17350 409 -L---TAYSGITRALLAPVATRLEHVQKILSE---LLPPDAILVGQSLNCDLHALK--------------------MMHP 461 (528)
Q Consensus 409 -~---T~isGIT~e~L~~a~p~l~dV~~~L~~---~i~~d~ILVGHnL~fDL~~L~--------------------~~hp 461 (528)
. -+-+||.-+.....+-...+..+.+.. .+.++-..|.++-.+|+.+|= ...|
T Consensus 122 ~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP 201 (333)
T 2p51_A 122 ESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP 201 (333)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCc
Confidence 0 133688877666556676666666653 455566788888899987651 1235
Q ss_pred CEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHH
Q psy17350 462 YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLS 519 (528)
Q Consensus 462 ~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~ 519 (528)
.++||-.|..... ..+.+|..||+. ||..-. + ..|.|-.||.-|+..|.++.+
T Consensus 202 ~iYD~K~l~~~~~--~l~ggL~~lA~~-L~v~Ri-g-~~HqAGsDSlLT~~~F~kl~~ 254 (333)
T 2p51_A 202 KNYDIKYIMKSVL--NNSKGLQDIADD-LQIHRI-G-PQHQAGSDALLTARIFFEIRS 254 (333)
T ss_dssp SEEEHHHHHTTTT--CCCCCHHHHHHH-TTCCCC-S-CTTSHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhc--cccCCHHHHHHH-cCCCcc-C-cchhhhhHHHHHHHHHHHHHH
Confidence 6899988876532 235689999986 676532 2 479999999999999986654
No 49
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=96.04 E-value=0.09 Score=52.15 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=98.9
Q ss_pred CCCeEEEeeceecCCCC-----c----------------CcEEEEE--EEEeCCcE-----E--EEEEEcCCCCCCCC-c
Q psy17350 361 TSPLYGLDCEMCKTSND-----Q----------------NELTRVT--LVDEQENV-----V--YESLVKPYNPITNY-L 409 (528)
Q Consensus 361 ~~~~vALDcEmtgt~~g-----~----------------~eLirIs--~Vd~~G~v-----i--~d~LVkP~~~I~dy-~ 409 (528)
..+|||||+|++|...+ . -.|++++ +.|.+|+. . |+-........-.- .
T Consensus 23 ~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~S 102 (252)
T 2d5r_A 23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDS 102 (252)
T ss_dssp HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHH
T ss_pred hCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHH
Confidence 46899999999998532 0 1355555 45656653 2 23332222111000 0
Q ss_pred ---eeecCCChhhhcccCCCHHHHHHHHHh---cCCCCcEEEEcCchhhHHHHc--------------------ccCCCE
Q psy17350 410 ---TAYSGITRALLAPVATRLEHVQKILSE---LLPPDAILVGQSLNCDLHALK--------------------MMHPYV 463 (528)
Q Consensus 410 ---T~isGIT~e~L~~a~p~l~dV~~~L~~---~i~~d~ILVGHnL~fDL~~L~--------------------~~hp~v 463 (528)
-+-+||.-+.....+-+..+..+.+.. .++++-..|.|+-.+|+..|= ...|.+
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~i 182 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVI 182 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCE
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcch
Confidence 134678766666556666666666654 445566788899999987661 123568
Q ss_pred eeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 464 IDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 464 IDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
+||..+..... ..+.+|..||+. ||..- .| ..|.|-.||.-|...|.++.+.
T Consensus 183 yD~K~l~~~~~--~l~~gL~~la~~-L~v~r-~g-~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 183 YDVKYLMKSCK--NLKGGLQEVAEQ-LELER-IG-PQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp EEHHHHGGGCT--TCCSSHHHHHHH-HTCCC-CS-STTSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhc--ccCCCHHHHHHH-cCCCc-cC-cccchhhhHHHHHHHHHHHHHH
Confidence 99988876543 235689999996 67653 22 4799999999999999876543
No 50
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.022 Score=65.89 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCCCeEEEeeceecC-----CCCcCcEEEEEEE-EeCCcE--EEEEE--EcCCCCCCCCceeecCCChhhhcccCCCHHH
Q psy17350 360 PTSPLYGLDCEMCKT-----SNDQNELTRVTLV-DEQENV--VYESL--VKPYNPITNYLTAYSGITRALLAPVATRLEH 429 (528)
Q Consensus 360 ~~~~~vALDcEmtgt-----~~g~~eLirIs~V-d~~G~v--i~d~L--VkP~~~I~dy~T~isGIT~e~L~~a~p~l~d 429 (528)
+..+++++|+||.+. ++..++|+.|+.+ ..+|.. ..... +.+..+ +....+... ++-.+
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~-~sE~e 315 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSH-ATEEE 315 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEE-SSHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEEC-CCHHH
Confidence 446789999999853 3456899999965 445532 11111 122211 122334443 56778
Q ss_pred HHHHHHhcCCC--CcEEEEcCc-hhhHHHHc-------ccCC-----------------------------------C-E
Q psy17350 430 VQKILSELLPP--DAILVGQSL-NCDLHALK-------MMHP-----------------------------------Y-V 463 (528)
Q Consensus 430 V~~~L~~~i~~--d~ILVGHnL-~fDL~~L~-------~~hp-----------------------------------~-v 463 (528)
+...+.+++.. -+||||||. .||+.+|. +... + +
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 88888777641 479999998 78998872 1110 0 3
Q ss_pred eeehhhchhcCCCCCCCCHHHHHHHhhCCcccC-C-C-------CC--------CChHHHHHHHHHHHHHH
Q psy17350 464 IDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQN-Q-D-------GG--------HCSKEDAIAALRLVKLK 517 (528)
Q Consensus 464 IDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~-~-~-------~~--------HdAlEDA~AT~eL~~~~ 517 (528)
+|+..+.... .....|+|..+|+++||..-.. . . .. .-.+.||..+++|+.+.
T Consensus 396 lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444322 2456899999999999965431 0 0 00 11257999999998754
No 51
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=95.89 E-value=0.048 Score=57.98 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=59.7
Q ss_pred HHHHhcCCCCcEEEEcCchhhHHHHc---ccCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCC-------C-
Q psy17350 432 KILSELLPPDAILVGQSLNCDLHALK---MMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-------G- 500 (528)
Q Consensus 432 ~~L~~~i~~d~ILVGHnL~fDL~~L~---~~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~-------~- 500 (528)
..|.+++. +...|||++.+|+.+|+ +..+.++||.......+. . +++|..|++.|||.....+.. .
T Consensus 85 ~~L~~lL~-d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpL 161 (440)
T 3cym_A 85 NDFNRAVG-DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-K-RFGLAAVTEHFLGLTLAKEHSAADWSYRPL 161 (440)
T ss_dssp HHHHHHHT-TCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-S-SCSHHHHHHHHHCEECCCCCTTCCTTCSSC
T ss_pred HHHHHHHC-CCCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-C-CCCHHHHHHHHhCCCcccccccCCCcCCCC
Confidence 34566665 55799999999999995 223468999655443443 3 799999999999976654211 1
Q ss_pred -----CChHHHHHHHHHHHHHHHHc
Q psy17350 501 -----HCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 501 -----HdAlEDA~AT~eL~~~~L~~ 520 (528)
.-|.+||.++.+||..+.++
T Consensus 162 s~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 162 PRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11568999999998866544
No 52
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.72 E-value=0.066 Score=60.95 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=80.4
Q ss_pred CCCCCeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCC--CCCCCceeecCCChhhhcccCCCHHHHHHHHHh
Q psy17350 359 TPTSPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYN--PITNYLTAYSGITRALLAPVATRLEHVQKILSE 436 (528)
Q Consensus 359 ~~~~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~--~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~ 436 (528)
.+..+++++|+|+.+ .| ++..|+.-+..-+.++ .+=.|.. ++.+. .+... +.-.++...+.+
T Consensus 150 ~p~lrilsfDIE~~~--~g--~i~~I~~~~~~~~~v~-~l~~~~~~~~~~~~----------~V~~f-~~E~~lL~~f~~ 213 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG--ELYCIGLEGCGQRIVY-MLGPENGDASSLDF----------ELEYV-ASRPQLLEKLNA 213 (786)
T ss_dssp CCCCCEEEEEEEECT--TS--CEEEEEEEETTEEEEE-EESSCCSCCTTCSS----------EEEEE-SSHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC--CEEEEEecCCCCCeEE-EEecCCCCCCCCCc----------eEEEe-CCHHHHHHHHHH
Confidence 456789999999993 34 7888887653322222 1111211 22221 22222 344556666655
Q ss_pred cCCC--CcEEEEcCc-hhhHHHHc-------ccC--------------------------CC-EeeehhhchhcCCCCCC
Q psy17350 437 LLPP--DAILVGQSL-NCDLHALK-------MMH--------------------------PY-VIDTSVIFNTTGIRTHK 479 (528)
Q Consensus 437 ~i~~--d~ILVGHnL-~fDL~~L~-------~~h--------------------------p~-vIDTs~L~~~~~~~~~k 479 (528)
++.. -+||||||. +||+.+|. +.. .+ ++|...+.+........
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 5542 249999997 68998872 100 01 34544433321224568
Q ss_pred CCHHHHHHHhhCCcccCCCCCCCh----------------------HHHHHHHHHHHHHH
Q psy17350 480 PKLKMLTSHFLGLDIQNQDGGHCS----------------------KEDAIAALRLVKLK 517 (528)
Q Consensus 480 ~sLk~La~~~Lg~~Iq~~~~~HdA----------------------lEDA~AT~eL~~~~ 517 (528)
|+|+++|+++||..-. .|+. +.||..+++|+.+.
T Consensus 294 ysL~~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 294 FSLETVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CSHHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987622 1332 57899999998753
No 53
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=95.64 E-value=0.0045 Score=58.57 Aligned_cols=94 Identities=10% Similarity=0.014 Sum_probs=60.9
Q ss_pred eeeccCCCCCCchhhhhhHHHHHHHHHHHHhc----CCcEEEeccCCcC--ccc--------ccCCcEeecccccCCCCC
Q psy17350 6 EVLGLNPGGVLLNAYFKMNARQIKRLENKKRK----MDALVEIKTLNEA--DKQ--------MMHPYVIDTSVIFNTTGI 71 (528)
Q Consensus 6 ~vSGI~p~~~~~~a~~~~~~~v~~~l~~l~~~----~~~IlvGH~l~~D--aL~--------l~Hp~i~DTa~~~~~~~~ 71 (528)
..+||+.+. +.++. .+++|..++.+.+++ .+++||||....| -|+ ..|.+++|.+.+
T Consensus 70 ~ltGIt~~~-l~~~p--~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl------ 140 (186)
T 3tr8_A 70 TASGLLERV-KNSSV--DEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTL------ 140 (186)
T ss_dssp HHTSHHHHH-HTCCC--CHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHH------
T ss_pred hccCCCHHH-HhcCC--CHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHH------
Confidence 457999873 34443 245688888888841 2689999999888 222 234567884333
Q ss_pred CCCCccHHHHHHHHhC---ccccCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy17350 72 RTHKPKLKMLTSHFLG---LDIQNQDGGHCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 72 ~~~~~SLk~La~~~L~---~~IQ~~~~gHdSvEDA~Aam~L~~~k~~~ 116 (528)
+.||++++- ..|... ..|.-..||+|+.+++++++++
T Consensus 141 -------~elar~~~P~~~~~~~~~-~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 141 -------KILAQRWAPQIAAAHIKE-SQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp -------HHHHHHHCHHHHTTSCCC-CCSCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHCccccccCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 223332221 134332 4899999999999999999886
No 54
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.61 E-value=0.035 Score=64.12 Aligned_cols=156 Identities=12% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCCeEEEeeceecCC------CCcCcEEEEEEEEeCCcE--EEEEEEcCCCCCCCCcee---------ecCCChhhhccc
Q psy17350 361 TSPLYGLDCEMCKTS------NDQNELTRVTLVDEQENV--VYESLVKPYNPITNYLTA---------YSGITRALLAPV 423 (528)
Q Consensus 361 ~~~~vALDcEmtgt~------~g~~eLirIs~Vd~~G~v--i~d~LVkP~~~I~dy~T~---------isGIT~e~L~~a 423 (528)
..++++||+|+..-+ ....+|+.|++.|..+.. +|+-|-.|......|.+. -..+..+.+.++
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 186 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKI 186 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCe
Confidence 357899999996522 125799999999985543 455555554444444331 123444444432
Q ss_pred C----CCHHHHHHHHHhcCC--CCcEEEEcCc-hhhHHHHc--cc--C--------------------------------
Q psy17350 424 A----TRLEHVQKILSELLP--PDAILVGQSL-NCDLHALK--MM--H-------------------------------- 460 (528)
Q Consensus 424 ~----p~l~dV~~~L~~~i~--~d~ILVGHnL-~fDL~~L~--~~--h-------------------------------- 460 (528)
. ++-.++..++.+++. .-.||+|||. .||+.+|. .. |
T Consensus 187 ~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~ 266 (903)
T 3qex_A 187 IYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLF 266 (903)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEe
Confidence 1 356677777777664 2579999998 78986651 00 0
Q ss_pred CC-Eeeehhhchhc-CCCCCCCCHHHHHHHhhCCcccCCCC-------------CCChHHHHHHHHHHHHH
Q psy17350 461 PY-VIDTSVIFNTT-GIRTHKPKLKMLTSHFLGLDIQNQDG-------------GHCSKEDAIAALRLVKL 516 (528)
Q Consensus 461 p~-vIDTs~L~~~~-~~~~~k~sLk~La~~~Lg~~Iq~~~~-------------~HdAlEDA~AT~eL~~~ 516 (528)
.+ ++|+..+++.. ......++|+.+|+++||..-..-.. .+-.+.||..|++|+.+
T Consensus 267 GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 267 GISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp TCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 01 34555555431 22345789999999999886432000 01125799999999875
No 55
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=95.51 E-value=0.28 Score=49.58 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=95.9
Q ss_pred CCCCCeEEEeeceecCCCC---------------------cCcEEEEEEE--EeCCcE------E--EEEEEcCCCCCCC
Q psy17350 359 TPTSPLYGLDCEMCKTSND---------------------QNELTRVTLV--DEQENV------V--YESLVKPYNPITN 407 (528)
Q Consensus 359 ~~~~~~vALDcEmtgt~~g---------------------~~eLirIs~V--d~~G~v------i--~d~LVkP~~~I~d 407 (528)
-+..+|||||+|++|...+ .-.|+++++. |.+|+. . |+-.....+.+-.
T Consensus 35 i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~ 114 (289)
T 1uoc_A 35 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS 114 (289)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC
T ss_pred HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcccccc
Confidence 4568999999999998521 1236666654 555552 2 3333222211100
Q ss_pred C-c---eeecCCChhhhcccCCCHHHHHHHHHh---cCCCCcEEEEcCchhhHHHH-c-------------------ccC
Q psy17350 408 Y-L---TAYSGITRALLAPVATRLEHVQKILSE---LLPPDAILVGQSLNCDLHAL-K-------------------MMH 460 (528)
Q Consensus 408 y-~---T~isGIT~e~L~~a~p~l~dV~~~L~~---~i~~d~ILVGHnL~fDL~~L-~-------------------~~h 460 (528)
- . -+-+||.-+.....+-+..+..+.+.. .+.++-..|.++-.+|+.+| + ...
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F 194 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhC
Confidence 0 0 134788766666545666655555544 34456688888889998765 1 123
Q ss_pred CCEeeehhhchhcC-C------------CCCCCCHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHHHHHH
Q psy17350 461 PYVIDTSVIFNTTG-I------------RTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKLS 519 (528)
Q Consensus 461 p~vIDTs~L~~~~~-~------------~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~AT~eL~~~~L~ 519 (528)
|.+.|+-.+...-. . ..++.+|..||+. ||++.. + ..|.|-.||.-|+..|.++.+
T Consensus 195 P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~-L~v~r~-g-~~HqAGsDSllT~~~F~kl~~ 263 (289)
T 1uoc_A 195 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE-LGLPRF-S-IFTTTGGQSLLMLLSFCQLSK 263 (289)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHHHH-TTCCCC-G-GGGSHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHH-cCCCcc-C-cccccHHHHHHHHHHHHHHHH
Confidence 66899988755311 1 1246789999996 787643 2 479999999999999976653
No 56
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=95.07 E-value=0.069 Score=56.68 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=67.7
Q ss_pred hhhcccCCCHHHHHHHHHhcCCCCcEEEEcCchhhHHHHc-------------------ccCCCEeeehhhchhc--CCC
Q psy17350 418 ALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALK-------------------MMHPYVIDTSVIFNTT--GIR 476 (528)
Q Consensus 418 e~L~~a~p~l~dV~~~L~~~i~~d~ILVGHnL~fDL~~L~-------------------~~hp~vIDTs~L~~~~--~~~ 476 (528)
+.+..+ ..|..|++.|.+ .+++|||||.-.||-++- ...|.++||-.|+... ...
T Consensus 262 ~~l~~~-~Gfr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~ 337 (430)
T 2a1r_A 262 EELNDA-VGFSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDI 337 (430)
T ss_dssp HHHHTT-SBTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTT
T ss_pred HHHHhh-hhHHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhc
Confidence 345553 668888888766 588999999999997652 1237899998887542 112
Q ss_pred CCCCCHHHHHHHhhCCc-----cc----------CCCCCCChHHHHHHHHHHHHHHHHc
Q psy17350 477 THKPKLKMLTSHFLGLD-----IQ----------NQDGGHCSKEDAIAALRLVKLKLSK 520 (528)
Q Consensus 477 ~~k~sLk~La~~~Lg~~-----Iq----------~~~~~HdAlEDA~AT~eL~~~~L~~ 520 (528)
....+|..|...+.... |. ..+..|.|-=||.+|..+|.++...
T Consensus 338 ~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp CSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 23568999977542221 11 0134699999999999999876643
No 57
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.70 E-value=0.048 Score=59.03 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=66.3
Q ss_pred hhhcccCCCHHHHHHHHHhcCCCCcEEEEcCchhhHHHHc-------------------ccCCCEeeehhhchhcC--CC
Q psy17350 418 ALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALK-------------------MMHPYVIDTSVIFNTTG--IR 476 (528)
Q Consensus 418 e~L~~a~p~l~dV~~~L~~~i~~d~ILVGHnL~fDL~~L~-------------------~~hp~vIDTs~L~~~~~--~~ 476 (528)
+.+..+ ..|..|++.|.+ ...+|||||.-.||-+|- ...|.++||-.|..... ..
T Consensus 257 ~~~~~~-~Gfr~v~~~L~~---~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~ 332 (507)
T 3d45_A 257 EELNDA-VGFSRVIHAIAN---SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDI 332 (507)
T ss_dssp HHHHHH-SBTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHH
T ss_pred HHHHhh-hhHHHHHHHHHh---CCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccc
Confidence 444553 567777777765 589999999999997762 12367999998865311 11
Q ss_pred CCCCCHHHHHHHhhCC------cccC----------CCCCCChHHHHHHHHHHHHHHHH
Q psy17350 477 THKPKLKMLTSHFLGL------DIQN----------QDGGHCSKEDAIAALRLVKLKLS 519 (528)
Q Consensus 477 ~~k~sLk~La~~~Lg~------~Iq~----------~~~~HdAlEDA~AT~eL~~~~L~ 519 (528)
....+|..|++. |+. +|.. .+..|.|--||..|..+|.++..
T Consensus 333 ~~~~~L~~l~~~-l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~ 390 (507)
T 3d45_A 333 INNTSLAELEKR-LKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp CCCCCHHHHHHH-TTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 225689999886 442 1110 12369999999999999987654
No 58
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=94.00 E-value=0.32 Score=57.81 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=84.5
Q ss_pred CCCCeEEEeeceecCC--C--------CcCcEEEEEEE-EeCCc-EEEEEEEcCCCC---CCCCce--eecCCChhhhcc
Q psy17350 360 PTSPLYGLDCEMCKTS--N--------DQNELTRVTLV-DEQEN-VVYESLVKPYNP---ITNYLT--AYSGITRALLAP 422 (528)
Q Consensus 360 ~~~~~vALDcEmtgt~--~--------g~~eLirIs~V-d~~G~-vi~d~LVkP~~~---I~dy~T--~isGIT~e~L~~ 422 (528)
+..+++++|+||++.. + ..++|+.||.+ ...|. .....+|-.... +.++.. +-.|+....+..
T Consensus 318 P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 318 PAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp CCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 4567999999998641 1 24789999965 32222 122222221111 111100 000111111333
Q ss_pred cCCCHHHHHHHHHhcCCC--CcEEEEcCc-hhhHHHHc--c--cC----C------------------------------
Q psy17350 423 VATRLEHVQKILSELLPP--DAILVGQSL-NCDLHALK--M--MH----P------------------------------ 461 (528)
Q Consensus 423 a~p~l~dV~~~L~~~i~~--d~ILVGHnL-~fDL~~L~--~--~h----p------------------------------ 461 (528)
. .+-.+++..+.++|.. -+||||||+ .||+.+|. + .| +
T Consensus 398 ~-~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~ 476 (1193)
T 2gv9_A 398 F-DSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193)
T ss_dssp E-SSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEc
Confidence 2 4566777777776642 369999998 78997772 1 01 1
Q ss_pred -C-EeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCC----------C-------CCChHHHHHHHHHHHHHH
Q psy17350 462 -Y-VIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQD----------G-------GHCSKEDAIAALRLVKLK 517 (528)
Q Consensus 462 -~-vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~----------~-------~HdAlEDA~AT~eL~~~~ 517 (528)
+ ++|+..+... ......|+|+.+|+++||..-..-. + .+-.+.||..++.||.+.
T Consensus 477 GRv~lDl~~~~~~-~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 477 GMVNIDMYGIITD-KIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TBEEEEHHHHHTT-TCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEeehHHHHHHH-HhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2344433322 1234579999999999987543200 0 012357889999988754
No 59
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=91.27 E-value=0.046 Score=52.45 Aligned_cols=61 Identities=11% Similarity=-0.098 Sum_probs=44.9
Q ss_pred HHHHHHhcCCcEEEeccCCcC--cccccC---C-cEeecccccCCCCCC--CCCccHHHHHHHHhCccc
Q psy17350 30 RLENKKRKMDALVEIKTLNEA--DKQMMH---P-YVIDTSVIFNTTGIR--THKPKLKMLTSHFLGLDI 90 (528)
Q Consensus 30 ~l~~l~~~~~~IlvGH~l~~D--aL~l~H---p-~i~DTa~~~~~~~~~--~~~~SLk~La~~~L~~~I 90 (528)
.|.+++...+.+.|||+..+| .|+-.+ | .++||..+.....|. ..+.||+.|++.+||.++
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l 167 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL 167 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC
Confidence 477899888889999999999 443222 2 589997654221121 347899999999999999
No 60
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=85.52 E-value=0.47 Score=44.35 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCcEEEeccCCcC--ccc----ccCCcEee-cccccCCCCCCCCCccHHHHHHHHhCccccCCC-------
Q psy17350 29 KRLENKKRKMDALVEIKTLNEA--DKQ----MMHPYVID-TSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQD------- 94 (528)
Q Consensus 29 ~~l~~l~~~~~~IlvGH~l~~D--aL~----l~Hp~i~D-Ta~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~------- 94 (528)
..|..++.+...+.|||+...| +|+ +.-..+.| |...-..- ++..+.||..|++.+||..+-.+.
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll-~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W 164 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKL-KCAETWSLNGLVKHVLGKQLLKDKSIRCSNW 164 (208)
T ss_dssp HHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHT-TCCCCCCHHHHHHHHHSCBCCCCHHHHTSCT
T ss_pred HHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHc-cCCCChhHHHHHHHHcCCCcCCCCCeeeCCC
Confidence 4688889877778999999999 443 33235889 54432211 123578999999999997763321
Q ss_pred --CC------CCcHHHHHHHHHHHHHHHHc
Q psy17350 95 --GG------HCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 95 --~g------HdSvEDA~Aam~L~~~k~~~ 116 (528)
.. +-..+||.++.+||.....+
T Consensus 165 ~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 165 SNFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01 01247888888888766543
No 61
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=81.39 E-value=1.3 Score=46.85 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCcEEEeccCCcC--ccc----ccCCcEeecccccCCCCCCCCCccHHHHHHHHhCccccCCCC----C--
Q psy17350 29 KRLENKKRKMDALVEIKTLNEA--DKQ----MMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG----G-- 96 (528)
Q Consensus 29 ~~l~~l~~~~~~IlvGH~l~~D--aL~----l~Hp~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~----g-- 96 (528)
..|..++.+...+-|||+...| +|. +.-..+.||...-..-+ . .+.||..|++.+||.++-.+.. +
T Consensus 172 ~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~-~-~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~r 249 (428)
T 3saf_A 172 YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN-L-GRHSLDHLLKLYCNVDSNKQYQLADWRIR 249 (428)
T ss_dssp GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTT-C-SCCSHHHHHHHHHCCCCCCTTTTSCTTCS
T ss_pred HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhC-C-CCCCHHHHHHHHcCCCCCccccccccccC
Confidence 4678888887778899999999 553 33235889987644322 1 2479999999999998865421 1
Q ss_pred -------CCcHHHHHHHHHHHHHHH
Q psy17350 97 -------HCSKEDAIAALRLVKLKL 114 (528)
Q Consensus 97 -------HdSvEDA~Aam~L~~~k~ 114 (528)
+-..+||.++++||....
T Consensus 250 pLs~~q~~YAA~DA~~ll~L~~~L~ 274 (428)
T 3saf_A 250 PLPEEMLSYARDDTHYLLYIYDKMR 274 (428)
T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 113588999999986644
No 62
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=71.90 E-value=3.6 Score=45.13 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeccCCcC--cc---cccCC-cEeecccccCCCCCCCCCccHHHHHHHHhCcccc-------
Q psy17350 25 ARQIKRLENKKRKMDALVEIKTLNEA--DK---QMMHP-YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQ------- 91 (528)
Q Consensus 25 ~~v~~~l~~l~~~~~~IlvGH~l~~D--aL---~l~Hp-~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ------- 91 (528)
+.+...+..++.+.+.+.|||....| +| .+.-+ .+.||...-..-.....+.+|..|++.|||...-
T Consensus 76 ~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~g 155 (605)
T 2kfn_A 76 ERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAG 155 (605)
T ss_dssp HHHHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHC
T ss_pred HHHHHHHHHHHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhC
Confidence 44667899999876678999999998 44 33333 3799987643211112368999999999887532
Q ss_pred CCC-----CC-------CCcHHHHHHHHHHHHHHHHc
Q psy17350 92 NQD-----GG-------HCSKEDAIAALRLVKLKLSK 116 (528)
Q Consensus 92 ~~~-----~g-------HdSvEDA~Aam~L~~~k~~~ 116 (528)
.+. .. |...+||.++++||.....+
T Consensus 156 Kg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 156 KGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp SSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 01 23568999999998865554
No 63
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=69.90 E-value=8.1 Score=42.26 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCCCCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCCC
Q psy17350 362 SPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPPD 441 (528)
Q Consensus 362 ~~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~d 441 (528)
.+++++|+||+. ++.+..+..+++.+.++...| .| . ..+.+..+.+.. .+
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~-----------------~~------~---~~l~~fi~~~~~---~~ 55 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEY-----------------KI------G---NSLDEFMAWVLK---VQ 55 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCE-----------------EE------E---SCHHHHHHHHHH---HC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEE-----------------Ee------c---hhHHHHHHHHHH---cC
Confidence 469999999964 444466777777653221111 01 0 124444444433 35
Q ss_pred cEEEEcCchhhHHHH
Q psy17350 442 AILVGQSLNCDLHAL 456 (528)
Q Consensus 442 ~ILVGHnL~fDL~~L 456 (528)
.++++||+.||+.+|
T Consensus 56 ~~i~~hNl~FD~~~l 70 (575)
T 2py5_A 56 ADLYFHNLKFAGAFI 70 (575)
T ss_dssp CEEEETTHHHHHHHH
T ss_pred CEEEEEChhhhHHHH
Confidence 779999999999887
No 64
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=66.96 E-value=4.3 Score=42.46 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=56.2
Q ss_pred HHHHHHhcCCcEEEeccCCcC--ccc----ccCCcEeecccccCCCCCCCCCccHHHHHHHHhCccccCCCC----CC--
Q psy17350 30 RLENKKRKMDALVEIKTLNEA--DKQ----MMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG----GH-- 97 (528)
Q Consensus 30 ~l~~l~~~~~~IlvGH~l~~D--aL~----l~Hp~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~----gH-- 97 (528)
.|..++.+...+-|||+...| +|+ +.-..+.||...-..-+ ++ +.||..|++.+||..+-.+.. +-
T Consensus 150 ~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~-~~-~~~L~~L~~~~lg~~l~K~~~~sdW~~rp 227 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG-LP-RHSLAYLLENFANFKTSKKYQLADWRIRP 227 (410)
T ss_dssp GGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHT-CS-CCSHHHHHHHHSCCCCCCTTTTSCTTCSS
T ss_pred HHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhC-CC-ccCHHHHHHHHcCCCCCccccccCCCCCC
Confidence 578888876778899999999 552 33234899986543221 11 689999999999988743210 00
Q ss_pred -C------cHHHHHHHHHHHHHHHH
Q psy17350 98 -C------SKEDAIAALRLVKLKLS 115 (528)
Q Consensus 98 -d------SvEDA~Aam~L~~~k~~ 115 (528)
. ..+||.+.++||.....
T Consensus 228 L~~~q~~YAa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 228 LSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 14788888888865443
No 65
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=64.10 E-value=9.1 Score=39.18 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCcEEEeccCCcC--ccc----ccCCcEeecccccCCCCCCCCCccHHHHHHHHhCccccCCCC-------
Q psy17350 29 KRLENKKRKMDALVEIKTLNEA--DKQ----MMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG------- 95 (528)
Q Consensus 29 ~~l~~l~~~~~~IlvGH~l~~D--aL~----l~Hp~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~------- 95 (528)
..+..++.+...+.|||+...| +|+ +.-..+.||...-..- +++.+.||..|++.+||..+-.+..
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL-~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~r 142 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 (375)
T ss_dssp HHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHT-TCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSS
T ss_pred HHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHc-CCCCChhHHHHHHHHcCCCCCCCcccCCCCCC
Confidence 3578888876678899999999 553 2222579998764332 2245789999999999987754311
Q ss_pred CCC------cHHHHHHHHHHHHHHHH
Q psy17350 96 GHC------SKEDAIAALRLVKLKLS 115 (528)
Q Consensus 96 gHd------SvEDA~Aam~L~~~k~~ 115 (528)
.-. ..+||.++++||.....
T Consensus 143 pL~~~q~~YAa~Da~~l~~L~~~L~~ 168 (375)
T 1yt3_A 143 PLTERQCEYAAADVWYLLPITAKLMV 168 (375)
T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 24688888888866443
No 66
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=51.97 E-value=4.3 Score=45.37 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCcEEEeccC-CcC--cc----------cccCC--cEeecccccCCCCCCCCCccHHHHHHHHh-----
Q psy17350 27 QIKRLENKKRKMDALVEIKTL-NEA--DK----------QMMHP--YVIDTSVIFNTTGIRTHKPKLKMLTSHFL----- 86 (528)
Q Consensus 27 v~~~l~~l~~~~~~IlvGH~l-~~D--aL----------~l~Hp--~i~DTa~~~~~~~~~~~~~SLk~La~~~L----- 86 (528)
+...|..++. .+.++|||.. ..| +| .+.-+ .+.||...-..-.....+.+|..|++.+|
T Consensus 42 ~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~ 120 (698)
T 1x9m_A 42 YLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALE 120 (698)
T ss_dssp HHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCC
T ss_pred HHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchh
Confidence 4567888887 5788999998 999 55 34333 48999876432111123567888888876
Q ss_pred --Cccc-----c-----------CCCC--------------CCCcHHHHHHHHHHHHHHHHcCCCCC
Q psy17350 87 --GLDI-----Q-----------NQDG--------------GHCSKEDAIAALRLVKLKLSKGDLCS 121 (528)
Q Consensus 87 --~~~I-----Q-----------~~~~--------------gHdSvEDA~Aam~L~~~k~~~g~~~~ 121 (528)
|... . .|.. .|-..+||.++++||.....+-..++
T Consensus 121 ~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 121 AWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred hhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4322 1 1110 24467999999999987766433333
No 67
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=47.24 E-value=14 Score=35.70 Aligned_cols=138 Identities=15% Similarity=0.155 Sum_probs=89.0
Q ss_pred CeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCC--CCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCC
Q psy17350 363 PLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNP--ITNYLTAYSGITRALLAPVATRLEHVQKILSELLPP 440 (528)
Q Consensus 363 ~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~--I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~ 440 (528)
.-..||+|-.-.+ .+++++---...--++-|=+|... +.+-.---|||--.+|.++.|. +...+...+++
T Consensus 58 ~ttWiDIEG~p~D-----PVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPG---L~S~vi~~LP~ 129 (243)
T 3q7c_A 58 AKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPG---LTSAVIDALPR 129 (243)
T ss_dssp SCCEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTT---HHHHHHHHSCT
T ss_pred CCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCc---hHHHHHHhCCc
Confidence 3467999976544 357888876444445566667642 2222345599999999998775 45667888988
Q ss_pred CcEEEEcCchhhHHHHcccCCC----EeeehhhchhcCC--CCCCCCHHHHHHHhhCCcccCC-------CCCCChHHHH
Q psy17350 441 DAILVGQSLNCDLHALKMMHPY----VIDTSVIFNTTGI--RTHKPKLKMLTSHFLGLDIQNQ-------DGGHCSKEDA 507 (528)
Q Consensus 441 d~ILVGHnL~fDL~~L~~~hp~----vIDTs~L~~~~~~--~~~k~sLk~La~~~Lg~~Iq~~-------~~~HdAlEDA 507 (528)
+-||-.++.+ |++-|=-.|.+ +||...-....+. ..-.-+.+.||+.+-|+-+... ...|+||-||
T Consensus 130 nMVlT~QGsD-DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PHCALLDC 208 (243)
T 3q7c_A 130 NMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDC 208 (243)
T ss_dssp TCEEEESSHH-HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEECCCSSSSCCEECCCCHHHHH
T ss_pred CcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEeccccCCCCCCCchHHHHHH
Confidence 9999999866 77666445653 8987543221110 0001245677877777776542 1479999999
Q ss_pred HH
Q psy17350 508 IA 509 (528)
Q Consensus 508 ~A 509 (528)
++
T Consensus 209 IM 210 (243)
T 3q7c_A 209 IM 210 (243)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 68
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=38.80 E-value=10 Score=41.66 Aligned_cols=87 Identities=8% Similarity=-0.129 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCcEEEeccCCcC--cc---cccCC-cEeecccccCCCCCCCCCccHHHHHHHHhCccccCC----CCC-
Q psy17350 28 IKRLENKKRKMDALVEIKTLNEA--DK---QMMHP-YVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQ----DGG- 96 (528)
Q Consensus 28 ~~~l~~l~~~~~~IlvGH~l~~D--aL---~l~Hp-~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~----~~g- 96 (528)
...+..++.+.+...|||.+..| +| .+.-+ .+.||...-..-.......+|..|+++|||.++... +.|
T Consensus 70 l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~ 149 (592)
T 3pv8_A 70 DPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGA 149 (592)
T ss_dssp CHHHHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGG
T ss_pred HHHHHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccc
Confidence 35688888887788999999999 54 23323 367987653321111235799999999999987632 111
Q ss_pred -----------CCcHHHHHHHHHHHHHHH
Q psy17350 97 -----------HCSKEDAIAALRLVKLKL 114 (528)
Q Consensus 97 -----------HdSvEDA~Aam~L~~~k~ 114 (528)
+...+||.++.+|+....
T Consensus 150 ~~~~~~~e~~~~YAa~DA~~l~~L~~~L~ 178 (592)
T 3pv8_A 150 KRAVPDEPVLAEHLVRKAAAIWELERPFL 178 (592)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123578889989886543
No 69
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=34.99 E-value=26 Score=37.31 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=88.7
Q ss_pred CeEEEeeceecCCCCcCcEEEEEEEEeCCcEEEEEEEcCCCC--CCCCceeecCCChhhhcccCCCHHHHHHHHHhcCCC
Q psy17350 363 PLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYESLVKPYNP--ITNYLTAYSGITRALLAPVATRLEHVQKILSELLPP 440 (528)
Q Consensus 363 ~~vALDcEmtgt~~g~~eLirIs~Vd~~G~vi~d~LVkP~~~--I~dy~T~isGIT~e~L~~a~p~l~dV~~~L~~~i~~ 440 (528)
.-..||+|-.-.+ .+++++.-....--++-|=+|... +.+-.-.-|||--.||.++.|.+ ...+...+++
T Consensus 392 ~ttWiDIEG~p~D-----PVE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL---~S~vi~~LP~ 463 (577)
T 3mwp_A 392 AKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGL---TSAVIDALPR 463 (577)
T ss_dssp SCEEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTH---HHHHHHHSCT
T ss_pred CCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCch---HHHHHHhCCc
Confidence 3477899866443 356788776444455666677642 23333455999999999987754 5667788888
Q ss_pred CcEEEEcCchhhHHHHcccCC----CEeeehhhchhcCC--CCCCCCHHHHHHHhhCCcccCC-------CCCCChHHHH
Q psy17350 441 DAILVGQSLNCDLHALKMMHP----YVIDTSVIFNTTGI--RTHKPKLKMLTSHFLGLDIQNQ-------DGGHCSKEDA 507 (528)
Q Consensus 441 d~ILVGHnL~fDL~~L~~~hp----~vIDTs~L~~~~~~--~~~k~sLk~La~~~Lg~~Iq~~-------~~~HdAlEDA 507 (528)
+-||-.++.+ |++-|=-.|. .+||...-....+. ..-.-+.+.||+.+-|+-+... ...|+|+-||
T Consensus 464 ~mV~T~QGsd-DI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW~~~~~LC~~H~GiVv~kKKkg~~~~~~pHCALlDC 542 (577)
T 3mwp_A 464 NMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMDC 542 (577)
T ss_dssp TCEEEESSHH-HHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEECC-----EEECCCCHHHHH
T ss_pred CcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEecccCCCCCCCCchHHHHHH
Confidence 8888888866 7766644565 38887543221110 0001245667777777766542 1479999999
Q ss_pred HH
Q psy17350 508 IA 509 (528)
Q Consensus 508 ~A 509 (528)
++
T Consensus 543 iM 544 (577)
T 3mwp_A 543 IM 544 (577)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 70
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=32.93 E-value=5.9 Score=43.09 Aligned_cols=79 Identities=15% Similarity=0.023 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCcEEEeccCCcC-c-ccccCCcEeecccccCCCCCCCCCccHHHHHHHHhCccccCCCCCCCcHHHHHH
Q psy17350 28 IKRLENKKRKMDALVEIKTLNEA-D-KQMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIA 105 (528)
Q Consensus 28 ~~~l~~l~~~~~~IlvGH~l~~D-a-L~l~Hp~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~gHdSvEDA~A 105 (528)
...+..++.+ ..+|||....| . ..+.-+.+.||...-..-. +. +.+|..||++||+. -||...+||.+
T Consensus 47 l~~l~~~l~d--~~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~-p~-~~~L~~La~~yl~~------~gk~a~~DA~~ 116 (540)
T 4dfk_A 47 YKALRDLKEA--RGLLAKDLSVLALREGLGLPPGDDPMLLAYLLD-PS-NTTPEGVARRYGGE------WTEEAGERAAL 116 (540)
T ss_dssp HHHHTTCSSB--CSTTHHHHHHHHHHTTCCCCBCCCHHHHHHHHC-TT-CCCHHHHHHHHTSC------CCSCHHHHHHH
T ss_pred HHHHHHHHcC--CCEEEeccHHHHHHcCCCCCcceeHHHHHHHhC-CC-CCCHHHHHHHHhhh------hccchHHHHHH
Confidence 3455555553 56799998888 3 2222224678876533211 12 67999999999987 26778899999
Q ss_pred HHHHHHHHHHc
Q psy17350 106 ALRLVKLKLSK 116 (528)
Q Consensus 106 am~L~~~k~~~ 116 (528)
+.+||.....+
T Consensus 117 t~~L~~~L~~~ 127 (540)
T 4dfk_A 117 SERLFANLWGR 127 (540)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999766554
No 71
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=26.11 E-value=56 Score=34.32 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCcEEEeccCCcC--cc---cccCCcEeecccccCCCCCCCCCccHHHHHHHHhCccccCCCC-------C
Q psy17350 29 KRLENKKRKMDALVEIKTLNEA--DK---QMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDG-------G 96 (528)
Q Consensus 29 ~~l~~l~~~~~~IlvGH~l~~D--aL---~l~Hp~i~DTa~~~~~~~~~~~~~SLk~La~~~L~~~IQ~~~~-------g 96 (528)
..|..++.+ ...|||+...| +| .+.-+.+.||...-..-. .. +.+|..|++.+||..+..+.. .
T Consensus 85 ~~L~~lL~d--~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~-~~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rp 160 (440)
T 3cym_A 85 NDFNRAVGD--AVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLG-LK-RFGLAAVTEHFLGLTLAKEHSAADWSYRP 160 (440)
T ss_dssp HHHHHHHTT--CEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTT-CS-SCSHHHHHHHHHCEECCCCCTTCCTTCSS
T ss_pred HHHHHHHCC--CCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhC-CC-CCCHHHHHHHHhCCCcccccccCCCcCCC
Confidence 367888875 36899999888 55 333336799954432222 23 789999999999987765411 1
Q ss_pred CC------cHHHHHHHHHHHHHHHH
Q psy17350 97 HC------SKEDAIAALRLVKLKLS 115 (528)
Q Consensus 97 Hd------SvEDA~Aam~L~~~k~~ 115 (528)
-+ ..+||.+.++||.....
T Consensus 161 Ls~~q~~YAa~Da~~Ll~L~~~L~~ 185 (440)
T 3cym_A 161 LPRDWRNYAALDVELLIELETKMRA 185 (440)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 24788888888865443
No 72
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=25.50 E-value=85 Score=35.85 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=52.9
Q ss_pred HHHHhcCCCCcEEEEcCchhhHHHHcc---cCCCEeeehhhchhcCCCCCCCCHHHHHHHhhCCcccCCCCCCChHHHHH
Q psy17350 432 KILSELLPPDAILVGQSLNCDLHALKM---MHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAI 508 (528)
Q Consensus 432 ~~L~~~i~~d~ILVGHnL~fDL~~L~~---~hp~vIDTs~L~~~~~~~~~k~sLk~La~~~Lg~~Iq~~~~~HdAlEDA~ 508 (528)
+.|.+++....+ |+.+|+.+|.. ....+.||........+ . .++|+.|++.| |.+. .+ . ..+||.
T Consensus 340 ~~Lk~lLed~~i----n~K~d~~~L~~~Gi~~~~~~Dt~laayLl~p-~-~~~l~~l~~~~-gk~~--~~-~--ya~da~ 407 (832)
T 1bgx_T 340 KALRDLKEARGL----LAKDLSVLALREGLGLPPGDDPMLLAYLLDP-S-NTTPEGVARRY-GGEW--TE-E--AGERAA 407 (832)
T ss_dssp HHHHHCSSBCBT----THHHHHHHHHHHTCCCCBCCCHHHHHHHHCT-T-CCSTTHHHHHH-SCCC--CS-S--HHHHHH
T ss_pred HHHHHHHhCCCC----ChHHHHHHHHHcCCccCcccCHHHHHHHcCC-C-CCCHHHHHHHh-CCCc--hH-H--HHHHHH
Confidence 457788874445 99999999953 22346799887554333 2 68999999987 5421 11 1 237999
Q ss_pred HHHHHHHHHHHc
Q psy17350 509 AALRLVKLKLSK 520 (528)
Q Consensus 509 AT~eL~~~~L~~ 520 (528)
+|+.|+....++
T Consensus 408 ~~~~l~~~l~~~ 419 (832)
T 1bgx_T 408 LSERLFANLWGR 419 (832)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876554
No 73
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=22.34 E-value=13 Score=43.88 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCcEEEEcCchhhHHHHccc------CCCEeeehhh
Q psy17350 440 PDAILVGQSLNCDLHALKMM------HPYVIDTSVI 469 (528)
Q Consensus 440 ~d~ILVGHnL~fDL~~L~~~------hp~vIDTs~L 469 (528)
..+||||||+.||-..++-. -.+.+||+.|
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSL 228 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSM 228 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHH
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhh
Confidence 36999999999998666422 2368999886
Done!