RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17350
(528 letters)
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET:
U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Length = 189
Score = 198 bits (505), Expect = 4e-61
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 358 VTPTSPLYGLDCEMCKTSNDQ-NELTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGIT 416
+ + + +DCEM + + L R +LV+ V+Y+ ++P IT+Y T SG+T
Sbjct: 1 MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60
Query: 417 RALLAPVATRLEHVQKILSELLPPDAILVGQSLNCDLHALKMMHP--YVIDTSVI----F 470
+ AT + + +LL ++VG L D ALK + DTS
Sbjct: 61 PQHMVG-ATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWR 118
Query: 471 NTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
+ L++L+ L IQN GH S EDA A + L ++
Sbjct: 119 EAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQ 166
Score = 77.4 bits (191), Expect = 1e-16
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 53 QMMHP--YVIDTSVI----FNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAA 106
+ + DTS + L++L+ L IQN GH S EDA A
Sbjct: 99 KEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARAT 158
Query: 107 LRLVKLKL 114
+ L ++
Sbjct: 159 MELYQISQ 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 5e-16
Identities = 102/603 (16%), Positives = 172/603 (28%), Gaps = 259/603 (42%)
Query: 121 STKP---AHHTVNLGFSL--NDYLMFAHELPGLRDRFVKMEVIP---------PSS---- 162
ST+P +H ++ + + A +L +++F K+ P P++
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFF-IASQL---QEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 163 ------YTTSLVHELVMSSR---------------------HMEAQDMTPSKETSLP--- 192
Y +SLV + H A + +T+L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 193 ------------SNVTNSTHSPSQTIKSA-------FPI-GTQ----------------- 215
+ S S ++ I G Q
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 216 -PV------RSANT-ESLSATSQNTK---SQSQNIESAFQNTKSQ--SQYIESAFQNTKS 262
+ SA T L T+ + + +Q NI +N + Y+ S S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PIS 237
Query: 263 QPQN--IQLAS------QSTKSKSEIPLNDESKSATPQNTESQSVASAKRKSSESKSVED 314
P IQLA + E L K AT SQ + +A +E+ S E
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGAT---GHSQGLVTA-VAIAETDSWES 291
Query: 315 ---------------------KFPRTMLLLSALQMIE---EDYPIP---LRGELSAKFSK 347
+P T L S L+ E P P + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 348 YI---NT-----KEVYAE---------VT-PTSPLYGLDCEMCK----TSNDQNELTRVT 385
Y+ N+ K+V V+ P LYGL+ + K + DQ +R+
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ---SRIP 408
Query: 386 LVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVATRLEHVQKILSELLPP--DAI 443
+ + + P+ +P H S LL P D I
Sbjct: 409 FSERKLKFSNR-----FLPVA--------------SPF-----H-----SHLLVPASDLI 439
Query: 444 ---LVGQSLNCDLHALKMMHPYVIDTSVIFNTTG--IRTHKPKL-----KMLT------- 486
LV +++ + +++ P V DT G +R + +
Sbjct: 440 NKDLVKNNVSFNAKDIQI--P-VYDT-----FDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 487 -------SHFL-----------GLDIQNQDG-GHCSKEDAIAALRLV---KLKLSKGDLI 524
+H L L +N+DG G +R++ L ++ D
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG----------VRVIVAGTLDINPDDDY 541
Query: 525 GLK 527
G K
Sbjct: 542 GFK 544
Score = 44.7 bits (105), Expect = 9e-05
Identities = 48/296 (16%), Positives = 86/296 (29%), Gaps = 88/296 (29%)
Query: 45 KTLNEADKQMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQ------------- 91
N AD Y F+ I + P LT HF G +
Sbjct: 1644 DVWNRADNHFKDTYG------FSILDIVINNP--VNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 92 NQDGGHCSK---EDAIAALRLVKLKLSKGDLCSTK---PAHHTVNLGFSLNDYLMFAHEL 145
DG ++ ++ + KG L +T+ PA + F
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME-------KAAFED-- 1746
Query: 146 PGLRDRFVKMEVIPPSSYT--------TSLVH-----------ELVMSSRHMEAQDMTPS 186
L+ + +IP + +L E+V R M Q P
Sbjct: 1747 --LKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVV-FYRGMTMQVAVPR 1799
Query: 187 KETSLPSNVTNSTHSPSQTIKSAFPIGTQPVRSANTESLSATSQNTKSQS-QNIESA-FQ 244
E SN +P + S + E+L + ++ +E +
Sbjct: 1800 DELG-RSNYGMIAINPGRV-----------AASFSQEALQYVVERVGKRTGWLVEIVNY- 1846
Query: 245 NTKSQSQYIESAFQNTKSQPQNIQLASQ---STKSKSEIPLNDESKSATPQNTESQ 297
N ++Q QY+ + + + + K + I + + KS + + E
Sbjct: 1847 NVENQ-QYVAAG------DLRALDTVTNVLNFIKLQK-IDIIELQKSLSLEEVEGH 1894
Score = 42.7 bits (100), Expect = 3e-04
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 296 SQSVASAK---RKSSESKSV---EDKFPRTMLLLSALQMIEEDYPIPLRGELSAKFSKYI 349
SQ + S ++ V D + S L ++ + P+ L + K I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRI 1684
Query: 350 NTKEVYAEVTPTSPLYGLDCEMCKTSNDQNE-LTRVTLVDEQENVVYESLVKPYNPITNY 408
+E Y+ + + + G + K + NE T T E+ L
Sbjct: 1685 --RENYSAMIFETIVDG-KLKTEKIFKEINEHSTSYTFRSEKG-----LL---------S 1727
Query: 409 LTAYSGIT-RALLAPVATRLEHVQKILSE-LLPPDAILVGQSL 449
T + T AL + + S+ L+P DA G SL
Sbjct: 1728 ATQF---TQPALTL---MEKAAFEDLKSKGLIPADATFAGHSL 1764
Score = 37.0 bits (85), Expect = 0.020
Identities = 56/367 (15%), Positives = 94/367 (25%), Gaps = 141/367 (38%)
Query: 115 SKG---DLCSTKPA----------HHTVNLGFSLNDYLMFAHELPGLRDRFVKMEVIPPS 161
+G DL T A H GFS+ D V P
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--------------IVINN---PV 1670
Query: 162 SYTTSLVHELVMSSRHMEAQDMTPSKETSLPSNVTNSTHSPSQTIKSAFPIGTQPVRSAN 221
+ T +H + + ET + + S
Sbjct: 1671 NLT---IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----- 1722
Query: 222 TESLSATSQNTKSQSQNIESAFQNTKSQSQYIESAFQNTKSQPQNIQLASQST----KSK 277
LSAT Q T QP + L ++ KSK
Sbjct: 1723 KGLLSAT-QFT------------------------------QPA-LTLMEKAAFEDLKSK 1750
Query: 278 SEIPLNDESKSATPQNTESQSVA-------SAKRKSSESKSVEDKFPRTMLLLSALQMIE 330
IP + + A +A ++ S+E ++++
Sbjct: 1751 GLIPADA-------------TFAGHSLGEYAALASLADVMSIES----------LVEVVF 1787
Query: 331 EDYPIPLRGELSAKFSKYINT-KEVY--AEVTPTSPLYGLDCEMCKTSNDQNELTRVTLV 387
RG + Y + P + + + + V V
Sbjct: 1788 ------YRGMTMQVAVPRDELGRSNYGMIAINPGR--------VAASFSQEALQYVVERV 1833
Query: 388 DEQENVVYESLVKPYNPITNYLTA---Y--SGITRAL--LAPVATRLEHVQKI----LSE 436
++ + E I NY Y +G RAL + V ++ +QKI L +
Sbjct: 1834 GKRTGWLVE--------IVNYNVENQQYVAAGDLRALDTVTNVLNFIK-LQKIDIIELQK 1884
Query: 437 LLPPDAI 443
L + +
Sbjct: 1885 SLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 95/564 (16%), Positives = 157/564 (27%), Gaps = 190/564 (33%)
Query: 99 SKEDAIAALRLVKLKLSKGDLCSTKPAHHTVNLGFSLN-DYLM--FAHEL--PGL----- 148
SK+ LRL LSK + V +N +LM E P +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 149 ---RDR-------FVKMEVIPPSSYTTSLVHELVMSSRHMEA---QDMTPSKETSLPSNV 195
RDR F K V Y + + ++ R + + S +T + +V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 196 TNSTHSPSQTIKSAFPIG---------TQPVR------------SANTESLSATSQNTKS 234
S ++ P N S S S N K
Sbjct: 171 CLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 235 QSQNIESAFQNTKSQSQYIES--------------AFQNTKSQ----PQNIQLASQ-STK 275
+ +I++ + Y AF N + + Q+ S
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAA 284
Query: 276 SKSEIPLNDESKSATPQNTESQSVASAK----RKSSESKSVEDKFPRTMLLLSAL----- 326
+ + I L+ S + TP +S K R + V PR + +++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 327 ---------------QMIE----------------------EDYPIPLR----------- 338
+IE IP
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 339 ---GELSAKFSKY----INTKEVYAEVTPTSPLYGLDCEMCKTSNDQNELTRVTLVDE-- 389
+ K KY KE T + + E+ ++ L R ++VD
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKE------STISIPSIYLELKVKLENEYALHR-SIVDHYN 454
Query: 390 -QENVVYESLVKPYNPITNYLTAYSG--ITRALLAPVATRLEHV--------QKILSELL 438
+ + L+ P + Y ++ G + T V QKI +
Sbjct: 455 IPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 439 PPDAILVGQSLNCDLHALKMMHPYVIDTSVIFNTTGIRTHKPKLKMLTS---HFLGLDIQ 495
+A G LN L LK PY+ D + PK + L + FL +
Sbjct: 513 AWNA--SGSILN-TLQQLKFYKPYICD------------NDPKYERLVNAILDFL---PK 554
Query: 496 NQDGGHCSKEDAIAALRLVKLKLS 519
++ CSK L+++ L
Sbjct: 555 IEENLICSKY-----TDLLRIALM 573
Score = 46.0 bits (108), Expect = 3e-05
Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 58/232 (25%)
Query: 344 KFSKYINTKEVYAEVTPTSPLYGLDC-EMCKTSNDQNELTRV--TLVDEQENVVY----E 396
F + K+V + P S L + + + + + R+ TL+ +QE +V E
Sbjct: 28 AFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 397 SLVKPYN----PITNYLTAYSGITRA-------------LLAP--VATRLEHVQKI---L 434
L Y PI S +TR + A V +RL+ K+ L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQAL 144
Query: 435 SELLPPDAILV------GQS-LNCDLHALKMMHPYVIDTSVIFN----TTGIRTHKPK-- 481
EL P +L+ G++ + AL + Y + + F + P+
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETV 198
Query: 482 LKMLTSHFLGLDIQNQDGGHCSK------EDAIAALR-LVKLKLSKGDLIGL 526
L+ML +D S A LR L+K K + L+ L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Score = 39.8 bits (92), Expect = 0.002
Identities = 66/475 (13%), Positives = 123/475 (25%), Gaps = 145/475 (30%)
Query: 4 SLEVLGLNPGGV-----------------LLNAYFKMNARQIKRLENKKRKMDALVEIKT 46
S +V + L ++++ R ++ + I+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 47 -LNEADKQMMHPY-------VIDTSVI--FNTTGIRTHKPKLKMLTSHFLGL--DIQNQD 94
L K + V + FN + +LT+ F + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKI------LLTTRFKQVTDFLSAAT 285
Query: 95 GGHCSKEDAIAALR-------LVK-LKLSKGDL----CSTKPAHHTVNLGFSLNDYL--- 139
H S + L L+K L DL +T P ++ + S+ D L
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATW 344
Query: 140 ----------------MFAHEL-PG-LRDRFVKMEVIPPSSYTTSLVHELVMSSRHMEAQ 181
+ L P R F ++ V PPS++ +++ L + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKS 402
Query: 182 DMTPSKETSLPSNVTNSTHSPSQTIKSAFPIGTQPVRSANTESLSATSQNTKSQSQNIES 241
D V N H SL
Sbjct: 403 D---------VMVVVNKLHK---------------------YSL---------------- 416
Query: 242 AFQNTKSQSQYIESAFQNTKSQPQNIQLASQSTKSKSEIPLNDESKSATPQNTES---QS 298
+ K + I S + K + +N +S IP +S P +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 299 VA---SAKRKSSESKSVEDKFPRTMLLLSALQ--MIEEDYPIPLRGELSA------KFSK 347
+ F L L+ + + G + +
Sbjct: 477 IGHHLKNIEHPER----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 348 YINTKE-VYAEVTPT----SPLYGLDCEMCKTSNDQNELTRVTLVDEQENVVYES 397
YI + Y + P + K ++ L R+ L+ E E + E+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTD----LLRIALMAEDEAIFEEA 583
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline
type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus
musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A*
3b6p_A* 2o4i_A 2oa8_A
Length = 242
Score = 35.4 bits (81), Expect = 0.033
Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 28/146 (19%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALLA--PVATRLEHVQKILSELL---PPDAILVGQS- 448
+ P + + +G+++A L +++ +L L P LV +
Sbjct: 67 LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNG 126
Query: 449 -------LNCDLHALKMMHP----YVIDTSVIF--------NTTGIRTHKPKLKMLTSHF 489
L +L L P + +D+ + L + +
Sbjct: 127 DRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186
Query: 490 LGLDIQNQDGGHCSKEDAIAALRLVK 515
+ H ++ D + L + +
Sbjct: 187 YWQAPTD---SHTAEGDDLTLLSICQ 209
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo
sapiens} SCOP: c.55.3.5
Length = 238
Score = 34.5 bits (79), Expect = 0.058
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALL--APVATRLEHVQKILS---ELLPPDAILVG 446
+ P P T + +G++ L A V + L LV
Sbjct: 62 LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVA 118
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease,
homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus
musculus} PDB: 3u6f_B*
Length = 314
Score = 32.4 bits (73), Expect = 0.34
Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 28/151 (18%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALLA--PVATRLEHVQKILSELL---PPDAILVGQS- 448
+ P + + +G+++A L +++ +L L P LV +
Sbjct: 67 LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNG 126
Query: 449 -------LNCDLHALKMMHP----YVIDTSVIF--------NTTGIRTHKPKLKMLTSHF 489
L +L L P + +D+ + L + +
Sbjct: 127 DRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186
Query: 490 LGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520
+ H ++ + L + + K
Sbjct: 187 YWQAPTD---SHTAEGHVLTLLSICQWKPQA 214
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein,
pisum sativum L., SEED storage protein, storage protein,
plant protein; 2.61A {Pisum sativum}
Length = 496
Score = 30.3 bits (67), Expect = 1.6
Identities = 15/125 (12%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Query: 194 NVTNSTHSPSQTIKSAFPIGTQPVRSANTESLSATSQNTKSQSQNIESAFQNTKSQSQYI 253
++ +S + Q + + G + Q +++ NI S F + ++
Sbjct: 145 DIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGF-----KRDFL 199
Query: 254 ESAFQNTKSQPQNIQLASQSTKSKSEIPLNDESKSATPQNTESQSVASAKRKSSESKSVE 313
E AF + +Q ++ + + + + +P +++ ++++ E + +
Sbjct: 200 EDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRGSRQEEDEDEEKQ 259
Query: 314 DKFPR 318
+ R
Sbjct: 260 PRHQR 264
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics,
exonuclease, PSI-2, protein structure initiative; HET:
DNA; 2.50A {Thermotoga maritima MSB8}
Length = 186
Score = 29.8 bits (68), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALL--APVATRLEHVQKILSELLPPDAILVG 446
Y +L+KP I+ + +GIT+ +L +E V L D+I+V
Sbjct: 48 YHTLIKPSREISRKSSEITGITQEMLENKR---SIEEVLPEFLGFL-EDSIIVA 97
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form,
hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A
2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Length = 208
Score = 29.0 bits (65), Expect = 3.4
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 426 RLEHVQKILSELLP-PDAILVGQSLNCDLHALKMMHP----YVIDTSVIFNTTGIRTHKP 480
+ + L LL G + D L ++ + + N
Sbjct: 80 SMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETW 139
Query: 481 KLKMLTSHFLGLDI 494
L L H LG +
Sbjct: 140 SLNGLVKHVLGKQL 153
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 29.2 bits (66), Expect = 3.4
Identities = 5/61 (8%), Positives = 19/61 (31%)
Query: 219 SANTESLSATSQNTKSQSQNIESAFQNTKSQSQYIESAFQNTKSQPQNIQLASQSTKSKS 278
+A E +A + + + + + + Q + + + Q+ +
Sbjct: 239 AAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENV 298
Query: 279 E 279
+
Sbjct: 299 Q 299
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 29.0 bits (66), Expect = 4.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 127 HTVNLGFSLNDYLMF------AHELPG-LRDRFVKMEVIPPSSYT 164
H + F L+ ++F +PG LRDR ME+I + YT
Sbjct: 214 HYIEETFDLSK-VLFIATANNLATIPGPLRDR---MEIINIAGYT 254
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 27.6 bits (61), Expect = 9.6
Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 16/140 (11%)
Query: 89 DIQNQDGGHC-SKEDAIAALRLVK--LKLSKGDLCSTKPAHHTVNLGFSLNDYLMFAHEL 145
DI E + L V+ L + C K V + + +L
Sbjct: 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFC-VK-----VLAPYMPDVL----EKL 196
Query: 146 PGLRDRFVKMEVIPPSSYTTSLVHEL-VMSSRHMEAQDMTPSKETSLPSNVTNSTHSPSQ 204
L+ RF + P S ++ HE+ +S L + T +
Sbjct: 197 ELLQRRFGGTVIRNPLSRNST--HEMYYVSGARSNVTFTVNQTSRLLMRRMRRPTGKVTL 254
Query: 205 TIKSAFPIGTQPVRSANTES 224
PIGT+ V S++
Sbjct: 255 EADVILPIGTRSVGSSSHHH 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.351
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,061,615
Number of extensions: 396524
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 23
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)