RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17350
(528 letters)
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein,
ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 88.5 bits (218), Expect = 4e-21
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 367 LDCEMCKTSNDQNE-LTRVTLVDEQENVVYESLVKPYNPITNYLTAYSGITRALLAPVAT 425
+DCEM + L R +LV+ V+Y+ ++P IT+Y T SG+T +
Sbjct: 5 MDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATP 64
Query: 426 RLEHVQKILSELLPPDAILVGQSLNCDLHALK------MMHPYVIDTSVIFNTTGIRTHK 479
+IL ++VG L D ALK ++ D + +
Sbjct: 65 FAVARLEILQL--LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRR 122
Query: 480 PKLKMLTSHFLGLDIQNQDGGHCSKEDAIAALRLVKLKL 518
L++L+ L IQN GH S EDA A + L ++
Sbjct: 123 VSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQ 161
Score = 55.4 bits (132), Expect = 1e-09
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 48 NEADKQMMHPYVIDTSVIFNTTGIRTHKPKLKMLTSHFLGLDIQNQDGGHCSKEDAIAAL 107
+ ++ D + + L++L+ L IQN GH S EDA A +
Sbjct: 95 EDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATM 154
Query: 108 RLVKLKL 114
L ++
Sbjct: 155 ELYQISQ 161
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 226
Score = 35.7 bits (81), Expect = 0.007
Identities = 16/151 (10%), Positives = 38/151 (25%), Gaps = 28/151 (18%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALLA-----PVATRLEHVQKILSELLPPDAILVGQSL 449
+ P + + +G+++A L L + + + P LV +
Sbjct: 59 LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNG 118
Query: 450 NCDLHALKMMHPYVIDTSVIFNTTGIRTH--------------------KPKLKMLTSHF 489
+ L + T + T L + +
Sbjct: 119 DRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 178
Query: 490 LGLDIQNQDGGHCSKEDAIAALRLVKLKLSK 520
+ H ++ D + L + + K
Sbjct: 179 YWQAPTD---SHTAEGDVLTLLSICQWKPQA 206
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 229
Score = 30.7 bits (68), Expect = 0.30
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 426 RLEHVQKILSELLPPDAILV---GQSLNCDLHALKMMHPYVIDTSVIFNTTG 474
+ V ++ DAI G S + L M + TS +F T G
Sbjct: 4 QFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMG 55
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 30.2 bits (67), Expect = 0.42
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 421 APVATRLEHVQKILSELLPPDAILV---GQSLNCDLHALKMMHPYVIDTSVIFNTTG 474
AP+ + + + LL P+ ++ G S + +K+ + ++ + + G
Sbjct: 1 APL--VNAEIARQVEALLTPNTTVIAETGDS-WFNAQRMKLPNGARVEYEMQWGHIG 54
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 28.8 bits (63), Expect = 1.4
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 22/143 (15%)
Query: 395 YESLVKPYNPITNYLTAYSGITRALL--APVATRLEHVQKILSEL---LPPDAILVGQS- 448
+ P P T + +G++ L A V + L LV +
Sbjct: 60 LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNG 119
Query: 449 -------LNCDLHALKMMHP---YVIDTSVIF------NTTGIRTHKPKLKMLTSHFLGL 492
L +L L P +DT ++ G R + L S F
Sbjct: 120 FDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY 179
Query: 493 DIQNQDGGHCSKEDAIAALRLVK 515
H ++ D L +
Sbjct: 180 FRAEPSAAHSAEGDVHTLLLIFL 202
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 28.3 bits (63), Expect = 1.5
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 53 QMMHPYVIDTSVIFNTTGIRTH-----KPKLKMLTSH----FLGLDIQNQDGGHCSKEDA 103
+ +D + R K L L L +D + G + A
Sbjct: 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA 136
Query: 104 IAALRLVKLKLSKGDLCSTKPAHHTVNLGFS-LNDYLMFAHELPGLRDRFVKMEVIPPS 161
+ A ++K L++G+L +G + L++Y + + L RF K+ V PS
Sbjct: 137 MDAGNMLKPALARGELHC---------VGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 27.6 bits (60), Expect = 3.2
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 428 EHVQKILSELLPPDAILVGQSLNC--DLHALKMMHPYVIDTSVIFNTTG 474
E+ + L + P I++ L++ ++ + G
Sbjct: 8 ENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIG 56
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 27.2 bits (59), Expect = 3.6
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 119 LCSTKPAHHTVNLGFSLNDYLMFAHELPGLRDRFVKMEVIPPSSYTTS 166
+ + +G+ + L A E+ L ++ P SY S
Sbjct: 135 IGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWS 182
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 26.6 bits (58), Expect = 3.8
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 84 HFLGLDIQNQDGGHCSKEDAIAALRLVKLKLSKGDLCSTKPAH 126
+ L + DG + + AA L+ + + L P
Sbjct: 60 YIWELSDADCDG-ALTLPEFCAAFHLIVARKNGYPLPEGLPPT 101
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 208
Score = 27.1 bits (59), Expect = 3.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 428 EHVQKILSELLPPDAILV 445
++ K+L EL AI+
Sbjct: 6 QYAIKVLDELTDGKAIIS 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.351
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,670,441
Number of extensions: 71107
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.7 bits)