Query psy17351
Match_columns 162
No_of_seqs 199 out of 1122
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:05:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0924|consensus 100.0 4.4E-30 9.6E-35 237.1 7.9 141 1-145 863-1033(1042)
2 KOG0922|consensus 99.8 9.3E-21 2E-25 174.6 5.8 87 1-87 557-671 (674)
3 KOG0925|consensus 99.8 2.1E-20 4.5E-25 168.7 7.8 90 1-90 554-674 (699)
4 KOG0923|consensus 99.7 3.1E-18 6.8E-23 158.5 2.9 90 1-90 773-890 (902)
5 PF07717 OB_NTP_bind: Oligonuc 99.7 3E-17 6.4E-22 120.4 5.3 73 9-81 1-114 (114)
6 PRK11131 ATP-dependent RNA hel 99.7 2.6E-17 5.7E-22 161.7 5.9 88 1-88 587-702 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 99.4 6.8E-13 1.5E-17 131.1 6.1 85 1-85 578-689 (1283)
8 KOG0926|consensus 98.4 2.1E-07 4.5E-12 89.0 4.4 82 1-82 902-1022(1172)
9 COG1643 HrpA HrpA-like helicas 96.4 0.0011 2.3E-08 64.4 1.1 86 1-86 569-717 (845)
10 KOG0920|consensus 94.3 0.06 1.3E-06 53.0 4.7 86 1-86 718-852 (924)
11 PRK11664 ATP-dependent RNA hel 82.3 0.72 1.6E-05 45.0 1.6 39 47-85 532-573 (812)
12 KOG2477|consensus 65.8 4.9 0.00011 37.8 2.5 49 31-83 469-520 (628)
13 PF07841 DM4_12: DM4/DM12 fami 38.5 49 0.0011 22.7 3.4 46 5-57 2-47 (82)
14 PF01863 DUF45: Protein of unk 32.7 4.7 0.0001 31.7 -2.8 26 48-73 165-195 (205)
No 1
>KOG0924|consensus
Probab=99.96 E-value=4.4e-30 Score=237.10 Aligned_cols=141 Identities=50% Similarity=0.898 Sum_probs=122.8
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh------------------------------cCCCCCCEE
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF------------------------------GMGFTPDYV 50 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf------------------------------~~~~~P~~V 50 (162)
|++|++||.||++|++.+++++.|| +|||.|+||||+++| +. +.|+||
T Consensus 863 L~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~-y~p~Yi 940 (1042)
T KOG0924|consen 863 LKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGL-YTPDYI 940 (1042)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcC-CCCCee
Confidence 5789999999999999999999999 899999999999665 23 699999
Q ss_pred EehhhhhccccccccceeechhhHHHhcccceeccCCCCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17351 51 VYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQV 130 (162)
Q Consensus 51 VY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
|||||++|+++||+|||+|+|+||.|++|.||++++...+ +.+....++...||++|..++.....++.+...+..+.
T Consensus 941 vyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1042)
T KOG0924|consen 941 VYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDMEEEMFKAARDLVGRRLESKKASDKN 1018 (1042)
T ss_pred eehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchhhhhHHHHHHHHHHhhccchhccccc
Confidence 9999999999999999999999999999999999988877 67777888899999999998887777766665554233
Q ss_pred ccCcceeecCCCCCC
Q psy17351 131 SSRVGEILTPGLKET 145 (162)
Q Consensus 131 ~~~~~~i~~~g~~~~ 145 (162)
..+..+|.+||.+++
T Consensus 1019 ~~~~~k~~~~~~~~e 1033 (1042)
T KOG0924|consen 1019 YKRSTKINEPGEKKE 1033 (1042)
T ss_pred hhhhhhhcCcccccc
Confidence 334689999999975
No 2
>KOG0922|consensus
Probab=99.82 E-value=9.3e-21 Score=174.61 Aligned_cols=87 Identities=43% Similarity=0.886 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY 52 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY 52 (162)
|++|.+||+||..||.+++++..||+.|.+.|+||||+|+| +++.+|+||||
T Consensus 557 l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy 636 (674)
T KOG0922|consen 557 LKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIY 636 (674)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEE
Confidence 67899999999999999999999999999999999999877 24567999999
Q ss_pred hhhhhccccccccceeechhhHHHhcccceeccCC
Q psy17351 53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKET 87 (162)
Q Consensus 53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~ 87 (162)
|||++|+|.|||+||.|+++||.++||+||+....
T Consensus 637 ~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~~ 671 (674)
T KOG0922|consen 637 HELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSDE 671 (674)
T ss_pred EEEeecchHhHhheeecCHHHHHHhCchHhhcccc
Confidence 99999999999999999999999999999876553
No 3
>KOG0925|consensus
Probab=99.82 E-value=2.1e-20 Score=168.69 Aligned_cols=90 Identities=29% Similarity=0.595 Sum_probs=81.7
Q ss_pred CccHHHHHHHHHHHHHHcCCccccc----CcchhhhHHHHHhhhh---------------------------cCCCCCCE
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSC----GTDWDVIRKCICSALF---------------------------GMGFTPDY 49 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~----~~d~d~IrKcL~s~lf---------------------------~~~~~P~~ 49 (162)
|..|.+||.||.+||+++++++.+. .+++.+|||||+||+| ++..+|+|
T Consensus 554 l~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeW 633 (699)
T KOG0925|consen 554 LKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEW 633 (699)
T ss_pred HHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCe
Confidence 5689999999999999999998764 3457899999999988 24679999
Q ss_pred EEehhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351 50 VVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90 (162)
Q Consensus 50 VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~ 90 (162)
|+|||+|.|+++|+|.||.|.|+||.++||+||+..+++.+
T Consensus 634 VlyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsNfp~~ 674 (699)
T KOG0925|consen 634 VLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSNFPPS 674 (699)
T ss_pred EEEeeEEeeccceeeeecccCHHHHHHhchhhcccccCCch
Confidence 99999999999999999999999999999999999998876
No 4
>KOG0923|consensus
Probab=99.71 E-value=3.1e-18 Score=158.54 Aligned_cols=90 Identities=37% Similarity=0.709 Sum_probs=82.6
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY 52 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY 52 (162)
|.+|++||.||..++.+..+...||..+.+.||+||.+|+| +++..|+||||
T Consensus 773 m~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy 852 (902)
T KOG0923|consen 773 MKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVY 852 (902)
T ss_pred HHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEE
Confidence 67899999999999999999999999999999999999776 23567999999
Q ss_pred hhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351 53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90 (162)
Q Consensus 53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~ 90 (162)
||||+|+++|||.|+.|+++||.|+|||||+.++....
T Consensus 853 ~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~ 890 (902)
T KOG0923|consen 853 HELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDA 890 (902)
T ss_pred eehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhcccc
Confidence 99999999999999999999999999999998876644
No 5
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.69 E-value=3e-17 Score=120.45 Aligned_cols=73 Identities=37% Similarity=0.688 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCccccc-------------CcchhhhHHHHHhhhh----------------------------cCCCCC
Q psy17351 9 TQLKEILIQQKMKLVSC-------------GTDWDVIRKCICSALF----------------------------GMGFTP 47 (162)
Q Consensus 9 ~QL~~i~~r~~l~~~s~-------------~~d~d~IrKcL~s~lf----------------------------~~~~~P 47 (162)
+||.+||+++|+...+. .++++.|++|||+||| ..+.+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 59999999998765443 1456889999999887 246789
Q ss_pred CEEEehhhhhccccccccceeechhhHHHhcccc
Q psy17351 48 DYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMF 81 (162)
Q Consensus 48 ~~VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~ 81 (162)
+||||+|++.|+|.||++||+|+|+||.++||+|
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999986
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.68 E-value=2.6e-17 Score=161.72 Aligned_cols=88 Identities=17% Similarity=0.349 Sum_probs=79.6
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY 52 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY 52 (162)
|+.|.+|+.||..+|+++|++..++.++++.|++|||+||| +++.+|+||||
T Consensus 587 l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~ 666 (1294)
T PRK11131 587 VREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMV 666 (1294)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEE
Confidence 57899999999999999999999988899999999999877 13467999999
Q ss_pred hhhhhccccccccceeechhhHHHhcccceeccCCC
Q psy17351 53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETG 88 (162)
Q Consensus 53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~ 88 (162)
+|+|.|++.|||+||.|+|+||.+++|+||+...++
T Consensus 667 ~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~~~y~e 702 (1294)
T PRK11131 667 AELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSE 702 (1294)
T ss_pred EeeeccChhhhhhhcccCHHHHHHHHHHhccccCCC
Confidence 999999999999999999999999999998666543
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.36 E-value=6.8e-13 Score=131.08 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=75.6
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh---------------------------cCCCCCCEEEeh
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF---------------------------GMGFTPDYVVYH 53 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf---------------------------~~~~~P~~VVY~ 53 (162)
|+.+.+|+.||..++++++++..++.++++.|.+|||+||| +.+.+|+||||+
T Consensus 578 l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~ 657 (1283)
T TIGR01967 578 VREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAA 657 (1283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEe
Confidence 45788999999999999999888777788889999999776 124569999999
Q ss_pred hhhhccccccccceeechhhHHHhcccceecc
Q psy17351 54 ELIMTSKEYMQCVTAVDGQWLAELGPMFFSVK 85 (162)
Q Consensus 54 ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~ 85 (162)
|++.|++.||++|++|+|+||.+++|++|...
T Consensus 658 elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~ 689 (1283)
T TIGR01967 658 ELVETSKLYARLVAKIEPEWVEPVAGHLIKKN 689 (1283)
T ss_pred eecccchheEeeeccCCHHHHHHHhHHHhEec
Confidence 99999999999999999999999999998766
No 8
>KOG0926|consensus
Probab=98.42 E-value=2.1e-07 Score=88.99 Aligned_cols=82 Identities=30% Similarity=0.553 Sum_probs=60.9
Q ss_pred CccHHHHHHHHHHHHHHcCCcc-------ccc-Ccc--hhhhHHHHHhhhh----------------------------c
Q psy17351 1 MRKVREVRTQLKEILIQQKMKL-------VSC-GTD--WDVIRKCICSALF----------------------------G 42 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~-------~s~-~~d--~d~IrKcL~s~lf----------------------------~ 42 (162)
|..++++|.||..|....++.. ... .++ ...++..||+|+. .
T Consensus 902 m~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl 981 (1172)
T KOG0926|consen 902 MEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVL 981 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhh
Confidence 4568899999999987554322 111 122 3357899999532 2
Q ss_pred CCCCCCEEEehhhhhcccccccc-ceeechhhHHHhcccce
Q psy17351 43 MGFTPDYVVYHELIMTSKEYMQC-VTAVDGQWLAELGPMFF 82 (162)
Q Consensus 43 ~~~~P~~VVY~ELv~TsK~YmR~-VT~Idp~WL~e~aP~~f 82 (162)
.+..|+||+|.||+.|+..||.+ ||+|+|+||...++.|.
T Consensus 982 ~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slc 1022 (1172)
T KOG0926|consen 982 INSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLC 1022 (1172)
T ss_pred hccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhc
Confidence 46789999999999999888765 99999999999888543
No 9
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.0011 Score=64.41 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=65.0
Q ss_pred CccHHHHHHHHHHHHHH-cCCcccccCc------------------chhhhHHHHHhhhh--------------------
Q psy17351 1 MRKVREVRTQLKEILIQ-QKMKLVSCGT------------------DWDVIRKCICSALF-------------------- 41 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r-~~l~~~s~~~------------------d~d~IrKcL~s~lf-------------------- 41 (162)
|.++..|+.|+...+.+ .+..+.++.. .||.+++|++++++
T Consensus 569 L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 648 (845)
T COG1643 569 LSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNT 648 (845)
T ss_pred HHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCc
Confidence 45677888898888877 5544433332 26889999999433
Q ss_pred ----------cCCCCCCEEEehhhhhccccccc-----------cceeechhhHHHhcc---cceeccC
Q psy17351 42 ----------GMGFTPDYVVYHELIMTSKEYMQ-----------CVTAVDGQWLAELGP---MFFSVKE 86 (162)
Q Consensus 42 ----------~~~~~P~~VVY~ELv~TsK~YmR-----------~VT~Idp~WL~e~aP---~~f~~~~ 86 (162)
.....++|++|++++.|++.|++ +|+++.+.||.+.++ +|++...
T Consensus 649 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~~~~~~~~~~ 717 (845)
T COG1643 649 PVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTK 717 (845)
T ss_pred eeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccccchhhhhhh
Confidence 22457899999999999999999 699999999999988 5554443
No 10
>KOG0920|consensus
Probab=94.30 E-value=0.06 Score=52.97 Aligned_cols=86 Identities=20% Similarity=0.404 Sum_probs=64.8
Q ss_pred CccHHHHHHHHHHHHHHcCCcccc------------cCcchhhhHHHHHhhhhc--------------------------
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVS------------CGTDWDVIRKCICSALFG-------------------------- 42 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s------------~~~d~d~IrKcL~s~lf~-------------------------- 42 (162)
|+...+.+.|+...+...++--.+ ...+++.|+.+||++||-
T Consensus 718 l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~ 797 (924)
T KOG0920|consen 718 LQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVI 797 (924)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEE
Confidence 456678899999999988743221 134678899999997760
Q ss_pred ----------CCCCCCEEEehhhhhccc-cccccceeechhhHHHhcccceeccC
Q psy17351 43 ----------MGFTPDYVVYHELIMTSK-EYMQCVTAVDGQWLAELGPMFFSVKE 86 (162)
Q Consensus 43 ----------~~~~P~~VVY~ELv~TsK-~YmR~VT~Idp~WL~e~aP~~f~~~~ 86 (162)
.+....|++|+|-+.|++ .|+|++|.|.+.=+.-++...+.+..
T Consensus 798 i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~ 852 (924)
T KOG0920|consen 798 IHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRM 852 (924)
T ss_pred EecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecC
Confidence 122223999999999999 99999999999988888886664433
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=82.35 E-value=0.72 Score=44.95 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCEEEehhhhhcc-ccc--cccceeechhhHHHhcccceecc
Q psy17351 47 PDYVVYHELIMTS-KEY--MQCVTAVDGQWLAELGPMFFSVK 85 (162)
Q Consensus 47 P~~VVY~ELv~Ts-K~Y--mR~VT~Idp~WL~e~aP~~f~~~ 85 (162)
.+|+|++|++.++ +.+ |+.+++|+++||.+++|++|...
T Consensus 532 ~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~ 573 (812)
T PRK11664 532 HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQS 573 (812)
T ss_pred CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceee
Confidence 5799999998774 444 66899999999999999876544
No 12
>KOG2477|consensus
Probab=65.76 E-value=4.9 Score=37.77 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=32.3
Q ss_pred hhHHHHHhhhhcCCCCCCEEEehhhhhccccccccc---eeechhhHHHhccccee
Q psy17351 31 VIRKCICSALFGMGFTPDYVVYHELIMTSKEYMQCV---TAVDGQWLAELGPMFFS 83 (162)
Q Consensus 31 ~IrKcL~s~lf~~~~~P~~VVY~ELv~TsK~YmR~V---T~Idp~WL~e~aP~~f~ 83 (162)
+++|||+..+-..+ .=|||.|.+..-..|+++. -.| |.=+.+.||.||.
T Consensus 469 nfrKcL~~Mfas~n---~dviFyE~a~~l~rrpH~~IeCIPv-pqeig~map~YFK 520 (628)
T KOG2477|consen 469 NFRKCLALMFASMN---LDVIFYENAPSLQRRPHTAIECIPV-PQEIGSMAPAYFK 520 (628)
T ss_pred HHHHHHHHHHHhcC---CCeEEEeccCccccCCceeEEEeec-hHHhhhhhhHHHH
Confidence 67899986554332 2378888887755566643 233 4556789999993
No 13
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=38.48 E-value=49 Score=22.65 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhhcCCCCCCEEEehhhhh
Q psy17351 5 REVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYHELIM 57 (162)
Q Consensus 5 ~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf~~~~~P~~VVY~ELv~ 57 (162)
+.+.++|.+++.++|++-.+| |.|+||...=.. ..+..=|+.|++.
T Consensus 2 ~~lY~~lE~~l~~~G~~g~~C------llRaICE~~~~~-~~~~~gl~~ell~ 47 (82)
T PF07841_consen 2 RDLYKKLEDMLQRMGFDGRAC------LLRAICEAAQRP-LPEHNGLLGELLH 47 (82)
T ss_pred HHHHHHHHHHHHHcCCCchhh------HHHHHHHHhhcc-ccccCcHHHHHHH
Confidence 357889999999999865554 789999743210 1134445555543
No 14
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=32.75 E-value=4.7 Score=31.68 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=20.3
Q ss_pred CEEEehhhhhc-----cccccccceeechhh
Q psy17351 48 DYVVYHELIMT-----SKEYMQCVTAVDGQW 73 (162)
Q Consensus 48 ~~VVY~ELv~T-----sK~YmR~VT~Idp~W 73 (162)
||||.|||... ++.|=..|..+.|+|
T Consensus 165 dYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~ 195 (205)
T PF01863_consen 165 DYVVVHELCHLRHPNHSKRFWALVEKYMPDY 195 (205)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHCcCH
Confidence 59999999997 566777777777766
Done!