Query psy17351
Match_columns 162
No_of_seqs 199 out of 1122
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:05:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 99.8 7.4E-22 2.5E-26 165.1 7.2 89 1-89 138-254 (270)
2 2xau_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.6E-20 142.2 8.2 90 1-90 613-734 (773)
3 1oef_A Apolipoprotein E; glyco 35.4 26 0.00089 18.5 2.1 15 4-18 7-21 (26)
4 1oeg_A Apolipoprotein E; siali 34.6 12 0.00039 20.5 0.6 17 4-20 3-19 (26)
5 4g5a_A Uncharacterized protein 18.3 19 0.00065 25.0 -0.7 19 58-76 7-25 (99)
6 2qfa_C Inner centromere protei 13.9 28 0.00096 21.5 -0.6 18 60-77 20-37 (47)
7 1d02_A Type II restriction enz 11.7 1.3E+02 0.0046 23.6 2.5 52 31-87 129-183 (202)
8 2nte_A BARD-1, BRCA1-associate 11.0 1.9E+02 0.0064 21.5 3.2 17 64-80 186-202 (210)
9 1iio_A Conserved hypothetical 9.1 1.7E+02 0.0058 20.0 2.0 21 4-24 9-29 (84)
10 2ebw_A DNA repair protein REV1 8.7 98 0.0033 20.2 0.6 29 48-76 52-80 (97)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.4e-22 Score=165.14 Aligned_cols=89 Identities=42% Similarity=0.813 Sum_probs=79.3
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhh----------------------------cCCCCCCEEEe
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALF----------------------------GMGFTPDYVVY 52 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf----------------------------~~~~~P~~VVY 52 (162)
|++|.+||.||.++|.+.++++.+|+.+++.|++|||+||| +++.+|+||||
T Consensus 138 l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy 217 (270)
T 3i4u_A 138 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVY 217 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEE
Confidence 56899999999999999999999999999999999999887 13567999999
Q ss_pred hhhhhccccccccceeechhhHHHhcccceeccCCCC
Q psy17351 53 HELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGK 89 (162)
Q Consensus 53 ~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~ 89 (162)
+|+|.|+|.|||+||+|+|+||.+++|+||+.++...
T Consensus 218 ~Elv~Tsk~y~r~vt~I~p~wL~~~ap~~~~~~~~~~ 254 (270)
T 3i4u_A 218 HELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVDL 254 (270)
T ss_dssp EEEEESSSEEEEEEEECCHHHHHHHCTTTEECC----
T ss_pred EehhhhhHhHHHhccccCHHHHHHHhHHHhccccccc
Confidence 9999999999999999999999999999999887653
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.59 E-value=1.3e-15 Score=142.19 Aligned_cols=90 Identities=29% Similarity=0.655 Sum_probs=78.0
Q ss_pred CccHHHHHHHHHHHHHHcCCcccccC----cchhhhHHHHHhhhhc----------------------------CCCCCC
Q psy17351 1 MRKVREVRTQLKEILIQQKMKLVSCG----TDWDVIRKCICSALFG----------------------------MGFTPD 48 (162)
Q Consensus 1 L~~A~~IR~QL~~i~~r~~l~~~s~~----~d~d~IrKcL~s~lf~----------------------------~~~~P~ 48 (162)
|+.|.+||.||.++|.+++++..++. ++++.|++|||+|||. +...|+
T Consensus 613 l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~ 692 (773)
T 2xau_A 613 LSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAE 692 (773)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCC
Confidence 45799999999999999999887654 3568899999998771 233699
Q ss_pred EEEehhhhhccccccccceeechhhHHHhcccceeccCCCCC
Q psy17351 49 YVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKS 90 (162)
Q Consensus 49 ~VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~~~~ 90 (162)
||||+|++.|++.|||+||+|+|+||.+++|+||...+.+.+
T Consensus 693 ~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 734 (773)
T 2xau_A 693 WVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKG 734 (773)
T ss_dssp EEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSCGGGCCSS
T ss_pred EEEEEEeeccchhheeecccCCHHHHHHHHHHheeeccCCch
Confidence 999999999999999999999999999999999988887644
No 3
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=35.36 E-value=26 Score=18.46 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHc
Q psy17351 4 VREVRTQLKEILIQQ 18 (162)
Q Consensus 4 A~~IR~QL~~i~~r~ 18 (162)
|.+||.||..|+..+
T Consensus 7 ~e~ik~q~~~i~e~i 21 (26)
T 1oef_A 7 VEDMQRQWAGLVEKV 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999998764
No 4
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=34.60 E-value=12 Score=20.47 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy17351 4 VREVRTQLKEILIQQKM 20 (162)
Q Consensus 4 A~~IR~QL~~i~~r~~l 20 (162)
|.+||.|+..++++++-
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999988753
No 5
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=18.28 E-value=19 Score=24.96 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=12.9
Q ss_pred ccccccccceeechhhHHH
Q psy17351 58 TSKEYMQCVTAVDGQWLAE 76 (162)
Q Consensus 58 TsK~YmR~VT~Idp~WL~e 76 (162)
|.-.+.-.-|.|||+||.-
T Consensus 7 ~k~dw~~qrt~vdpewlkv 25 (99)
T 4g5a_A 7 TKSDWVIQRTPVDPEWLKV 25 (99)
T ss_dssp EEEECGGGGSCCCTTSEEE
T ss_pred chhceEEecccCChHHeEE
Confidence 3344555668999999853
No 6
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=13.91 E-value=28 Score=21.46 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.7
Q ss_pred ccccccceeechhhHHHh
Q psy17351 60 KEYMQCVTAVDGQWLAEL 77 (162)
Q Consensus 60 K~YmR~VT~Idp~WL~e~ 77 (162)
.+|+++|.-++--||.|+
T Consensus 20 ~eF~~~vdnk~mvWL~EI 37 (47)
T 2qfa_C 20 MEFLCNMDNKDLVWLEEI 37 (47)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHH
Confidence 578999999999999886
No 7
>1d02_A Type II restriction enzyme MUNI; alpha/beta protein, protein-DNA complex, distorted double HE hydrolase-DNA complex; HET: DNA; 1.70A {Mycoplasma} SCOP: c.52.1.8
Probab=11.73 E-value=1.3e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=36.4
Q ss_pred hhHHHHHhhhhcC---CCCCCEEEehhhhhccccccccceeechhhHHHhcccceeccCC
Q psy17351 31 VIRKCICSALFGM---GFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKET 87 (162)
Q Consensus 31 ~IrKcL~s~lf~~---~~~P~~VVY~ELv~TsK~YmR~VT~Idp~WL~e~aP~~f~~~~~ 87 (162)
.+.+.+++ ++.. ..-|=||||.+-+-+.-.|.|.+ +-|..++..|||-=...
T Consensus 129 gl~k~~r~-~~~i~~~~~lPFw~V~~gdItrdpkr~rei----tfwfd~y~~~yF~Wr~~ 183 (202)
T 1d02_A 129 GLLKAYRT-IGGINDEEILPFWVVFEGDITRDPKRVREI----TFWYDHYQDNYFMWRPN 183 (202)
T ss_dssp HHHHHHHH-HHCCCCTTSCSEEEEEESGGGGCHHHHHHH----HHHHTTCTTSEEEECTT
T ss_pred HHHHHHHH-HcCCCCCCcCceeEEEecccccCccceeee----eEEecccCccEEEeeCC
Confidence 45566553 3333 45678999999988876666655 47999999999865543
No 8
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=11.00 E-value=1.9e+02 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=12.8
Q ss_pred ccceeechhhHHHhccc
Q psy17351 64 QCVTAVDGQWLAELGPM 80 (162)
Q Consensus 64 R~VT~Idp~WL~e~aP~ 80 (162)
..|..|.++||.+-...
T Consensus 186 ~~v~~V~~~Wl~dcI~~ 202 (210)
T 2nte_A 186 GKVWKAPSSWFIDCVMS 202 (210)
T ss_dssp TTEEEEEHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHh
Confidence 45678999999986543
No 9
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=9.07 E-value=1.7e+02 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHcCCcccc
Q psy17351 4 VREVRTQLKEILIQQKMKLVS 24 (162)
Q Consensus 4 A~~IR~QL~~i~~r~~l~~~s 24 (162)
-.+|++||.+.++.-+.|+.+
T Consensus 9 ~~ei~~qi~~a~~~a~FPI~s 29 (84)
T 1iio_A 9 KEDIRGQIIGALAGADFPINS 29 (84)
T ss_dssp HHHHHHHHHHHHTTSSSTTBH
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 348999999999888888755
No 10
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=8.70 E-value=98 Score=20.16 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=0.0
Q ss_pred CEEEehhhhhccccccccceeechhhHHH
Q psy17351 48 DYVVYHELIMTSKEYMQCVTAVDGQWLAE 76 (162)
Q Consensus 48 ~~VVY~ELv~TsK~YmR~VT~Idp~WL~e 76 (162)
..||-...-...-..++++-.|.|+||.+
T Consensus 52 THlI~~~~~~~k~~~~~~~~iV~p~Wl~d 80 (97)
T 2ebw_A 52 THIIATNLPNAKIKELKGEKVIRPEWIVE 80 (97)
T ss_dssp CEEECSCCCTTHHHHTSSSCCBCTHHHHH
T ss_pred EEEEecCCChHHHHHhcCCCEeChHHHHH
Done!