Query psy17351
Match_columns 162
No_of_seqs 199 out of 1122
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 20:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17351.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17351hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1in1a_ c.15.1.2 (A:) DNA liga 21.8 16 0.0011 23.2 1.2 45 28-78 30-79 (88)
2 d6paxa2 a.4.1.5 (A:69-133) Pax 21.3 17 0.0012 22.4 1.2 24 2-25 26-51 (65)
3 d1k78a2 a.4.1.5 (A:82-142) Pax 20.3 9.1 0.00066 23.4 -0.2 23 2-24 28-52 (61)
4 d1kgsa2 c.23.1.1 (A:2-123) Pho 13.5 95 0.0069 19.4 3.8 27 6-32 12-38 (122)
5 d1ys7a2 c.23.1.1 (A:7-127) Tra 10.2 1.4E+02 0.01 18.7 3.8 27 6-32 12-38 (121)
6 d1mvoa_ c.23.1.1 (A:) PhoP rec 10.1 1.1E+02 0.0078 19.1 3.1 27 6-32 13-39 (121)
7 d1xhfa1 c.23.1.1 (A:2-122) Aer 10.1 1.2E+02 0.009 18.9 3.5 41 6-53 13-53 (121)
8 d1krwa_ c.23.1.1 (A:) NTRC rec 10.0 1.7E+02 0.013 18.1 4.3 41 6-53 14-54 (123)
9 d1hyua3 c.47.1.2 (A:1-102) Alk 9.4 61 0.0044 20.9 1.6 18 5-22 4-21 (102)
10 d1wyha2 g.39.1.3 (A:8-34) Four 8.9 44 0.0032 16.8 0.5 10 135-144 5-14 (27)
No 1
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.79 E-value=16 Score=23.18 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=26.3
Q ss_pred chhhhHHHHHh--hhhc---CCCCCCEEEehhhhhccccccccceeechhhHHHhc
Q psy17351 28 DWDVIRKCICS--ALFG---MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELG 78 (162)
Q Consensus 28 d~d~IrKcL~s--~lf~---~~~~P~~VVY~ELv~TsK~YmR~VT~Idp~WL~e~a 78 (162)
+.+.+++.|.+ |-|. ....-.+||-. +..-..+..|.|+|+.+-.
T Consensus 30 ~~~~L~r~i~a~GG~~~~~~~~~~vTHvI~~------~~~~~~~~iV~p~Wi~dci 79 (88)
T d1in1a_ 30 DFSRLRRYFVAFDGDLVQEFDMTSATHVLGS------RDKNPAAQQVSPEWIWACI 79 (88)
T ss_dssp THHHHHHHHHHHTCBCCCTTCCTTCCCEESC------CTTCTTSCEECHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEeeeccCCCceEEEEc------CCCCCCcEEEehHHHHHHH
Confidence 46677787776 3221 12234566643 3333456789999998743
No 2
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.28 E-value=17 Score=22.38 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHH--HHHHcCCccccc
Q psy17351 2 RKVREVRTQLKE--ILIQQKMKLVSC 25 (162)
Q Consensus 2 ~~A~~IR~QL~~--i~~r~~l~~~s~ 25 (162)
.+|.+||++|.. +|.+.++|-.|+
T Consensus 26 iFaWEIRd~Li~egiC~~~~vPSvSs 51 (65)
T d6paxa2 26 IFAWEIRDRLLSEGVCTNDNIPSVSS 51 (65)
T ss_dssp CCHHHHHHHHHHTTSSCTTTCCCHHH
T ss_pred cchHHHHHHHHHcCCCCCCCCCchHH
Confidence 368899999975 676666665553
No 3
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.28 E-value=9.1 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHH--HHHHcCCcccc
Q psy17351 2 RKVREVRTQLKE--ILIQQKMKLVS 24 (162)
Q Consensus 2 ~~A~~IR~QL~~--i~~r~~l~~~s 24 (162)
.+|.+||++|.. +|.+.++|-.|
T Consensus 28 iFaWEIRd~Li~egiC~~~nvPSvS 52 (61)
T d1k78a2 28 MFAWEIRDRLLAERVCDNDTVPSVS 52 (61)
T ss_dssp CCHHHHHHHHHHTTSSCTTTSCCHH
T ss_pred ccHHHHHHHHHHcCCCCCCCCCchH
Confidence 468899999965 66666666544
No 4
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.45 E-value=95 Score=19.43 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCcccccCcchhhh
Q psy17351 6 EVRTQLKEILIQQKMKLVSCGTDWDVI 32 (162)
Q Consensus 6 ~IR~QL~~i~~r~~l~~~s~~~d~d~I 32 (162)
.++..|..+++..|..+..+.+..+.+
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a~~~~~al 38 (122)
T d1kgsa2 12 DLADLITEALKKEMFTVDVCYDGEEGM 38 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEcchHHHH
Confidence 478889999999998887766544444
No 5
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.23 E-value=1.4e+02 Score=18.65 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCcccccCcchhhh
Q psy17351 6 EVRTQLKEILIQQKMKLVSCGTDWDVI 32 (162)
Q Consensus 6 ~IR~QL~~i~~r~~l~~~s~~~d~d~I 32 (162)
.++..|..+++..|..+..+.+..+.+
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a~~~~eal 38 (121)
T d1ys7a2 12 DVLASLERGLRLSGFEVATAVDGAEAL 38 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 478889999999998877665544444
No 6
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.12 E-value=1.1e+02 Score=19.09 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCcccccCcchhhh
Q psy17351 6 EVRTQLKEILIQQKMKLVSCGTDWDVI 32 (162)
Q Consensus 6 ~IR~QL~~i~~r~~l~~~s~~~d~d~I 32 (162)
.++..|..++++.|..+..+.+..+.+
T Consensus 13 ~~~~~l~~~L~~~g~~v~~a~~~~~al 39 (121)
T d1mvoa_ 13 SIVTLLQYNLERSGYDVITASDGEEAL 39 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 478889999999998877665544444
No 7
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.10 E-value=1.2e+02 Score=18.88 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhhcCCCCCCEEEeh
Q psy17351 6 EVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYH 53 (162)
Q Consensus 6 ~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf~~~~~P~~VVY~ 53 (162)
.++..|..++...|..+..+.+..+.+...- ...||.||-.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~-------~~~~dlii~D 53 (121)
T d1xhfa1 13 VTRNTLKSIFEAEGYDVFEATDGAEMHQILS-------EYDINLVIMD 53 (121)
T ss_dssp HHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------HSCCSEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEECChHHHHHHHH-------hcCCCEEEee
Confidence 4688899999999988877665555443221 2467766543
No 8
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.01 E-value=1.7e+02 Score=18.08 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCcccccCcchhhhHHHHHhhhhcCCCCCCEEEeh
Q psy17351 6 EVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGMGFTPDYVVYH 53 (162)
Q Consensus 6 ~IR~QL~~i~~r~~l~~~s~~~d~d~IrKcL~s~lf~~~~~P~~VVY~ 53 (162)
.++..|..++...|..+..+.+..+.+. .+ ....||.|+-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~a~~~~~a~~-~l------~~~~~dlii~D 54 (123)
T d1krwa_ 14 SIRWVLERALAGAGLTCTTFENGNEVLA-AL------ASKTPDVLLSD 54 (123)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSSHHHHH-HH------TTCCCSEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEeCCHHHHHH-HH------HhCCCCEEEeh
Confidence 4788889999999988776654444432 22 24577766643
No 9
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.44 E-value=61 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCcc
Q psy17351 5 REVRTQLKEILIQQKMKL 22 (162)
Q Consensus 5 ~~IR~QL~~i~~r~~l~~ 22 (162)
.+|++||..++.++.-++
T Consensus 4 ~~ik~QLk~~f~~l~~~V 21 (102)
T d1hyua3 4 TNMKTQLRAYLEKLTKPV 21 (102)
T ss_dssp HHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHHHhCCCCE
Confidence 369999999999886554
No 10
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.87 E-value=44 Score=16.81 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=7.8
Q ss_pred ceeecCCCCC
Q psy17351 135 GEILTPGLKE 144 (162)
Q Consensus 135 ~~i~~~g~~~ 144 (162)
.++++||.++
T Consensus 5 ~ktiMPGsrK 14 (27)
T d1wyha2 5 GETVMPGSRK 14 (27)
T ss_dssp CCBCCSSSCE
T ss_pred cceecCCccc
Confidence 4678999875
Done!