RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17351
         (162 letters)



>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
           mRNA processing, splicing, nucleotide-binding, nucleus,
           phosphoprotein, SPLI; 2.10A {Homo sapiens}
          Length = 270

 Score =  140 bits (354), Expect = 6e-42
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 1   MRKVREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFG------------------ 42
           +R+ +++R Q+  I+ + K+ +VSCG     ++K ICS  F                   
Sbjct: 138 LRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQ 197

Query: 43  ----------MGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETGKSGS 92
                         P++VVYHEL++T+KEYM+ VT +D +WL E  P FF V E    G 
Sbjct: 198 VVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVDLQGD 257

Query: 93  TKRRKALEHLHE 104
                      E
Sbjct: 258 HGLSAWSHPQFE 269


>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
           ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
           ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
          Length = 773

 Score =  135 bits (342), Expect = 1e-37
 Identities = 28/159 (17%), Positives = 71/159 (44%), Gaps = 32/159 (20%)

Query: 1   MRKVREVRTQLKEILIQQKMKLVSCGTD----WDVIRKCICSALF--------------- 41
           +     +R+QL+ ++ +  ++L +   +    +D IRK + S  F               
Sbjct: 613 LSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYIT 672

Query: 42  -------------GMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMFFSVKETG 88
                         +G   ++V+Y+E ++TSK Y++ VT+V  +WL E+ P ++ +    
Sbjct: 673 VKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQ 732

Query: 89  KSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQ 127
           K       + ++   +  +++KQ +++ +++  ++    
Sbjct: 733 KGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHH 771


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 42/153 (27%)

Query: 22  LVSCGTDWD----VIRKCICSALFGMGF-----TPDYVVYHELIMTSKE-------YMQC 65
            ++    W+     +RK I + LF +G       P+  +   ++  S E        M  
Sbjct: 282 AIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340

Query: 66  VTAVDGQWLAELGPMFFSVKETGKSGSTKRR------------------KALEHLHEMED 107
           ++ +  + + +       V +T       ++                  ++L  L+    
Sbjct: 341 ISNLTQEQVQDY------VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394

Query: 108 QMKQAQDEIQARKEEEERRQAQVSSRVGEILTP 140
           + K      Q+R    E R+ + S+R   + +P
Sbjct: 395 KAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASP 426



 Score = 28.1 bits (62), Expect = 1.6
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 17/83 (20%)

Query: 33  RKCICSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQWLAELGPMF------FSVKE 86
           RK      F   F P    +H         +   + +  + L +    F        V +
Sbjct: 412 RK----LKFSNRFLPVASPFHS------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461

Query: 87  TGKSGSTKRRKALEHLHEMEDQM 109
           T   GS  R  +      + D +
Sbjct: 462 T-FDGSDLRVLSGSISERIVDCI 483


>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
           eukaryotic regulatory protein, transcription/DNA
           complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
           SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
          Length = 63

 Score = 29.4 bits (66), Expect = 0.12
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 95  RRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSR 133
           R + L+ + ++ED++++   +    + E  R +  V  R
Sbjct: 25  RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER 63


>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
           SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
          Length = 185

 Score = 29.1 bits (66), Expect = 0.45
 Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
            R A + +  +       ED  +++QD++Q
Sbjct: 132 GRDANDKVKALLKDKEISEDDDRRSQDDVQ 161


>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national
           institute of allergy AN infectious diseases; 2.65A
           {Bacillus anthracis}
          Length = 209

 Score = 29.1 bits (66), Expect = 0.47
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR   + L ++       ED ++   ++IQ
Sbjct: 156 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQ 185


>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A
           {Artificial gene}
          Length = 121

 Score = 28.7 bits (65), Expect = 0.47
 Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
            R A   L  +          + QA  EIQ
Sbjct: 60  ARDAANDLAALGKDKEVNWFDISQALWEIQ 89


>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta
           sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1
           PDB: 1t1m_C
          Length = 185

 Score = 29.1 bits (66), Expect = 0.47
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR+ L+ + E        ED  K+ ++EIQ
Sbjct: 132 RREILKKIKEDQKEGLIPEDDAKRLENEIQ 161


>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle,
           protein synthesis, translation; 2.15A {Mycobacterium
           tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
          Length = 185

 Score = 29.0 bits (66), Expect = 0.49
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RRKA+E LH +       ED++ +A+ ++ 
Sbjct: 132 RRKAMEELHRIRKEGEAGEDEVGRAEKDLD 161


>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
           parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
          Length = 185

 Score = 29.1 bits (66), Expect = 0.52
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR A   L  +       ED+ ++AQ+EIQ
Sbjct: 132 RRDANNDLKALLKDKEISEDEDRKAQEEIQ 161


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.0 bits (64), Expect = 0.55
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 106 EDQMK--QAQDEIQARKEEEERRQAQ 129
           E+Q K  Q  D      E+E R +A+
Sbjct: 92  EEQRKRLQELDAASKVMEQEWREKAK 117



 Score = 28.2 bits (62), Expect = 1.1
 Identities = 5/57 (8%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 84  VKETGKSGSTKRRKALEH-LHEMEDQMKQAQDEIQARKEEEERRQAQ-VSSRVGEIL 138
           ++E   +     ++  E    ++E+  ++  ++++  K                +I+
Sbjct: 98  LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154



 Score = 25.1 bits (54), Expect = 9.7
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 106 EDQMKQAQDEIQARKEEEERRQAQ 129
            D++ Q  + I+  +EE+ +R  +
Sbjct: 77  ADRLTQEPESIRKWREEQRKRLQE 100


>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
           {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
           2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
           3j0e_G
          Length = 185

 Score = 28.7 bits (65), Expect = 0.58
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR+AL+ L ++       ED+ K+A+ EIQ
Sbjct: 133 RREALDKLKKLAKELHLSEDETKRAEAEIQ 162


>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
           genomics, seattle structural genomi for infectious
           disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
          Length = 448

 Score = 28.8 bits (65), Expect = 0.77
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 1   MRK-VREVRTQLKEILIQQKMKLVSCGTDWDVIRKCICSALFGM----GFTPDYVVY 52
           M   +  +R+ L   L ++K         WD I   I     GM    G TP++V Y
Sbjct: 353 MSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI-----GMFTFTGLTPEHVDY 404


>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex
           aeolicus} SCOP: d.67.3.1
          Length = 184

 Score = 28.3 bits (64), Expect = 0.98
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 95  RRKALEHLHEM----EDQMKQAQDEIQ 117
           RR+A E + E+    ED+ K+A + +Q
Sbjct: 134 RREAKEMIEELEGISEDEKKRALERLQ 160


>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
           binding, carbohydrate binding, calcium binding,
           endoplasmic reticulu; 2.57A {Mus musculus}
          Length = 332

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)

Query: 103 HEMEDQMKQAQDEIQARKEEEER 125
              E QMK  QDE Q  K E   
Sbjct: 307 KAAEKQMKDKQDEEQRLKLEHHH 329


>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A
           {Artificial gene} PDB: 1y69_8
          Length = 123

 Score = 27.1 bits (61), Expect = 1.4
 Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
            R A +    +          + Q+  ++Q
Sbjct: 70  GRDANDKAAALGKDKEINWFDISQSLWDVQ 99


>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
           transferase, ATP-GTP diphosphotransferase RNA
           processing, RNA degradation; 2.5A {Streptomyces
           antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
           d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
          Length = 757

 Score = 27.9 bits (63), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 82  FSVKETGKSGSTKRR 96
           +SV ETG+ GS KRR
Sbjct: 426 YSVGETGRVGSPKRR 440


>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
           degradation, kinase, transferase; 2.60A {Escherichia
           coli} PDB: 1sro_A
          Length = 723

 Score = 27.5 bits (62), Expect = 2.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 82  FSVKETGKSGSTKRR 96
           +SV ETG  GS KRR
Sbjct: 391 YSVGETGMVGSPKRR 405


>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
           domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
          Length = 630

 Score = 27.1 bits (61), Expect = 2.7
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 82  FSVKETGKSGSTKRR 96
           ++  E GK     RR
Sbjct: 393 YATNEIGKVTGLNRR 407


>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
           cytoplasm, nucleotidyltransferase, RNA- binding,
           transferase, hydrolase; 2.40A {Escherichia coli E24377A}
           PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
          Length = 549

 Score = 27.1 bits (61), Expect = 2.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 82  FSVKETGKSGSTKRR 96
           +SV ETG  GS KRR
Sbjct: 385 YSVGETGMVGSPKRR 399


>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
           complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
           4am3_A
          Length = 726

 Score = 27.1 bits (61), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 82  FSVKETGKSGSTKRR 96
           +SV ETG+ GS  RR
Sbjct: 401 YSVGETGRMGSPGRR 415


>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
           barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
           138}
          Length = 299

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 43  MGFTPDYVVYHELIMTSKEYMQ--CVTAVDGQWLAELGPMFFSVKETGKSGSTKRRKALE 100
           + F  D     ++++ + +      V+  D Q L      F+    +  S + +R + LE
Sbjct: 217 IQFHLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLE 276

Query: 101 HLHE------MEDQMKQAQD 114
             ++      +   ++ AQ 
Sbjct: 277 DFNKGSQNFDINKLIQLAQS 296


>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
           subfragment 2, heavy meromyosin, essential light chain,
           motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
           i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
          Length = 1184

 Score = 26.7 bits (59), Expect = 4.1
 Identities = 11/40 (27%), Positives = 25/40 (62%)

Query: 93  TKRRKALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSS 132
            K+++  E LHEME ++++ ++  Q  + E+++ Q Q+  
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 5.3
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 16/37 (43%)

Query: 121 EEEERRQAQVSSRVGEILTPGLKETAPGTPYTPRRTP 157
           E++  ++ Q S          LK       Y     P
Sbjct: 18  EKQALKKLQAS----------LK------LYADDSAP 38


>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent,
           polym terminus, transferase; 2.00A {Human poliovirus 1}
           SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A*
           2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A
           3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A
           3cdu_A 3cdw_A
          Length = 461

 Score = 26.3 bits (57), Expect = 6.1
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 102 LHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEILTPGL----KETAPGTPYTPRRTP 157
           + E+++ MK+A D    +    +    Q+        T GL      T+ G PY      
Sbjct: 67  ITEVDEYMKEAVDHYAGQLMSLDINTEQMXLEDAMYGTDGLEALDLSTSAGYPYVAMGKK 126

Query: 158 KRF 160
           KR 
Sbjct: 127 KRD 129


>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin,
          amino-acid biosynthesis, FAD, flavoprotein, methionine
          biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia
          coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A*
          2fmn_A* 2fmo_A* 1b5t_A*
          Length = 304

 Score = 26.0 bits (58), Expect = 7.2
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 74 LAELGPMFFSVKET-GKSGSTKRR 96
          L+ L P F SV  T G +   + R
Sbjct: 48 LSSLKPKFVSV--TYGANSGERDR 69


>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like
           nucleotidyl transferase, terminal uridi transferase,
           UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe
           972h-} PDB: 4e7x_A* 4e80_A
          Length = 405

 Score = 25.9 bits (56), Expect = 7.4
 Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 83  SVKETGKSGSTKRRKALEHLH-EMEDQMKQAQDEIQARKEEEERRQA 128
            + +      +   + + + H E      +  +EI+   +E + ++A
Sbjct: 21  EIHKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRA 67


>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
           pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
           cenocepacia} PDB: 2y4n_A*
          Length = 437

 Score = 25.7 bits (57), Expect = 7.7
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 28  DWDVIRKCICSALFGMGFTPDYVVYH 53
           D D     +  ++   G      V+ 
Sbjct: 114 DIDTWANLVARSIRAAGARRGDKVHV 139


>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
           pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
          Length = 443

 Score = 25.7 bits (57), Expect = 8.2
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 28  DWDVIRKCICSALFGMGFTPDYVVYH 53
           D D        ++   G  P   +++
Sbjct: 116 DIDTWANVTARSIRAAGGRPGDTLHN 141


>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT,
           alternative splicing, cell cycle, cell division, coiled
           coil, mitosis; 2.00A {Homo sapiens}
          Length = 58

 Score = 24.1 bits (51), Expect = 8.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 98  ALEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEIL 138
           ++ ++HEME Q+K A ++ Q     +++R+  V   + +I 
Sbjct: 4   SINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIF 44


>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
           structural genomics, joint cente structural genomics,
           JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
           thetaiotaomicron} PDB: 3s89_A*
          Length = 436

 Score = 25.7 bits (57), Expect = 9.4
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 28  DWDVIRKCICSALFGMGFTPDYVVYH 53
           D D     +   L+ +G     V  +
Sbjct: 110 DLDSWANLVARCLYMVGIRKTDVFQN 135


>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase,
          flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB:
          3apy_A* 1v93_A*
          Length = 310

 Score = 25.6 bits (57), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 74 LAELGPMFFSVKET-GKSGSTKRR 96
          L    P F S+  T G  GST+ R
Sbjct: 38 LKAFRPAFVSI--TYGAMGSTRER 59


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,553,268
Number of extensions: 142771
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 93
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)