RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17351
         (162 letters)



>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 25.9 bits (56), Expect = 1.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 88  GKSGSTKRRKALEHLHEMEDQMKQAQDEIQARKEE 122
           G SGS+ +RK  E L  ++    Q Q   +   ++
Sbjct: 1   GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQK 35


>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
           SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 129

 Score = 25.9 bits (57), Expect = 1.5
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 99  LEHLHEMEDQMKQAQDEIQARKEEEERRQAQVSSRVGEIL 138
           L  +  ++ ++ + +DE     +++E+    V S + + +
Sbjct: 90  LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFV 129


>d2j0na1 a.250.1.1 (A:144-314) Invasin IpaD {Shigella flexneri
           [TaxId: 623]}
          Length = 171

 Score = 25.2 bits (55), Expect = 3.8
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 72  QWLAELGPMFFSVKETGKSG 91
           +WL ELG     V +     
Sbjct: 82  KWLTELGGTIGKVSQKNGGY 101


>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 184

 Score = 24.9 bits (54), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 4/27 (14%)

Query: 95  RRKALEHLHEM----EDQMKQAQDEIQ 117
           RR+A E + E+    ED+ K+A + +Q
Sbjct: 134 RREAKEMIEELEGISEDEKKRALERLQ 160


>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 183

 Score = 24.5 bits (53), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RRKA+E LH +       ED++ +A+ ++ 
Sbjct: 131 RRKAMEELHRIRKEGEAGEDEVGRAEKDLD 160


>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
           maritima [TaxId: 2336]}
          Length = 184

 Score = 24.6 bits (53), Expect = 5.7
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR+ L+ + E        ED  K+ ++EIQ
Sbjct: 131 RREILKKIKEDQKEGLIPEDDAKRLENEIQ 160


>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 185

 Score = 24.1 bits (52), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR A   L  +       ED+ ++AQ+EIQ
Sbjct: 132 RRDANNDLKALLKDKEISEDEDRKAQEEIQ 161


>d2sici_ d.84.1.1 (I:) Subtilisin inhibitor {Streptomyces
          albogriseolus, s-3253 [TaxId: 1887]}
          Length = 107

 Score = 23.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 37 CSALFGMGFTPDYVVYHELIMTSKEYMQCVTAVDGQW 73
          C+ L  +G   + +   E +M    Y   +  VDG W
Sbjct: 44 CADLAAVGGDLNALTRGEDVMCPMVYDPVLLTVDGVW 80


>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
           thermophilus [TaxId: 274]}
          Length = 185

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 7/30 (23%)

Query: 95  RRKALEHLHEM-------EDQMKQAQDEIQ 117
           RR+AL+ L ++       ED+ K+A+ EIQ
Sbjct: 133 RREALDKLKKLAKELHLSEDETKRAEAEIQ 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,141
Number of extensions: 27685
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 35
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)