BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17353
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex
With Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 138 bits (348), Expect = 7e-34, Method: Composition-based stats.
Identities = 64/92 (69%), Positives = 79/92 (85%)
Query: 1 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFN 60
MADLEAVLADVSYLMAMEKSK TPAARASKKI+LP+PS+RSVM KYLE + EV F+KIF+
Sbjct: 1 MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFS 60
Query: 61 QVIGYILFKDFCENCCDEPVPQLKFYEEVRTH 92
Q +GY+LF+DFC N +E P ++FYEE++ +
Sbjct: 61 QKLGYLLFRDFCLNHLEEARPLVEFYEEIKKY 92
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Co-Crystal)
Length = 688
Score = 136 bits (342), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/91 (69%), Positives = 78/91 (85%)
Query: 2 ADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQ 61
ADLEAVLADVSYLMAMEKSK TPAARASKKI+LP+PS+RSVM KYLE + EV F+KIF+Q
Sbjct: 1 ADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFSQ 60
Query: 62 VIGYILFKDFCENCCDEPVPQLKFYEEVRTH 92
+GY+LF+DFC N +E P ++FYEE++ +
Sbjct: 61 KLGYLLFRDFCLNHLEEARPLVEFYEEIKKY 91
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G
Protein-Coupled Receptor Kinase 2 And Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 135 bits (341), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/92 (68%), Positives = 78/92 (84%)
Query: 1 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFN 60
MADLEAVLADVSYLMAMEKSK TPAARASKKI+LP+PS+RSVM KYLE + EV F+KIF+
Sbjct: 1 MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFS 60
Query: 61 QVIGYILFKDFCENCCDEPVPQLKFYEEVRTH 92
Q +GY+LF+DFC +E P ++FYEE++ +
Sbjct: 61 QKLGYLLFRDFCLKHLEEAKPLVEFYEEIKKY 92
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 135 bits (341), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/92 (68%), Positives = 78/92 (84%)
Query: 1 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFN 60
MADLEAVLADVSYLMAMEKSK TPAARASKKI+LP+PS+RSVM KYLE + EV F+KIF+
Sbjct: 1 MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFS 60
Query: 61 QVIGYILFKDFCENCCDEPVPQLKFYEEVRTH 92
Q +GY+LF+DFC +E P ++FYEE++ +
Sbjct: 61 QKLGYLLFRDFCLKHLEEAKPLVEFYEEIKKY 92
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 83 LKFYEEVRTHSIK----------KKSSFTAVFISIVDKTIFPFRCWVNTSTPE 125
LK YEE + H++ K+ T FI +++TI W N TP+
Sbjct: 68 LKDYEEXKAHNVGLEXIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPD 120
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 64 GYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIV 108
G ++F + ++ P PQ +Y E+ H K K + F+S V
Sbjct: 452 GMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKV 496
>pdb|2I9I|A Chain A, Crystal Structure Of Helicobacter Pylori Protein Hp0492
Length = 254
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 38 SVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE 73
S S++H+YLEK E KI N++ ++ K E
Sbjct: 184 SSNSIIHEYLEKNKEDAIHKILNRMYAVVMKKAVTE 219
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase
From Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase
From Sunflower
Length = 440
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 AVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGY 65
+V D ++A +S A R K PD + V+ +EK N +N ++ + V+G
Sbjct: 29 SVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTN-INPAEVGDIVVGS 87
Query: 66 IL 67
+L
Sbjct: 88 VL 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,420,754
Number of Sequences: 62578
Number of extensions: 120547
Number of successful extensions: 233
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 8
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)