Query psy17353
Match_columns 125
No_of_seqs 111 out of 156
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 20:07:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0986|consensus 100.0 1.3E-34 2.9E-39 253.7 8.3 108 1-113 1-111 (591)
2 smart00315 RGS Regulator of G 98.7 1.4E-08 3E-13 69.3 4.5 60 54-115 1-61 (118)
3 PF00615 RGS: Regulator of G p 98.1 4.4E-06 9.4E-11 56.1 4.8 58 54-113 1-59 (118)
4 KOG3589|consensus 92.7 0.2 4.3E-06 39.5 4.4 70 50-121 76-149 (221)
5 PF12345 DUF3641: Protein of u 66.4 6.6 0.00014 30.1 2.9 40 45-87 14-56 (134)
6 cd01040 globin Globins are hem 58.8 10 0.00022 26.0 2.5 54 54-109 11-66 (140)
7 COG0563 Adk Adenylate kinase a 45.9 3.6 7.9E-05 31.6 -1.5 37 14-54 6-42 (178)
8 PF09639 YjcQ: YjcQ protein; 31.2 22 0.00047 24.5 0.7 22 70-92 65-86 (88)
9 PF00042 Globin: Globin plant 29.1 35 0.00075 22.7 1.4 55 54-109 8-65 (110)
10 PF10409 PTEN_C2: C2 domain of 27.4 25 0.00055 24.9 0.5 10 114-123 87-96 (134)
11 COG3313 Predicted Fe-S protein 26.4 34 0.00073 23.8 0.9 42 81-122 24-65 (74)
12 PF05664 DUF810: Protein of un 24.5 35 0.00077 32.0 1.0 70 50-119 246-332 (677)
13 PF07606 DUF1569: Protein of u 23.6 72 0.0016 23.9 2.4 59 3-74 11-76 (152)
14 PF06945 DUF1289: Protein of u 22.6 38 0.00082 21.3 0.6 31 79-109 17-47 (51)
15 KOG3330|consensus 21.5 1E+02 0.0022 24.8 2.9 24 62-87 52-75 (183)
No 1
>KOG0986|consensus
Probab=100.00 E-value=1.3e-34 Score=253.70 Aligned_cols=108 Identities=32% Similarity=0.474 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHHhhhhcCCCCcccccccc--ccCCCCcchhhhHHHHHhhhccchhhh-hhhhhHHHHHHHHhhhcCC
Q psy17353 1 MADLEAVLADVSYLMAMEKSKCTPAARASKK--IVLPDPSVRSVMHKYLEKKNEVNFDKI-FNQVIGYILFKDFCENCCD 77 (125)
Q Consensus 1 m~~LE~vvANtayL~Are~~~~~~~~r~sKK--L~LP~iS~c~~mc~~Lr~~~e~~F~sI-~~QPIGr~LFrqFc~t~~e 77 (125)
||+||||||||+||||||+|+|++++|.+|+ |..||||+| ..||++++++|++| ++|||||+||||||+|.|+
T Consensus 1 m~eLEnivAnt~yL~Are~s~~~~k~~skk~~~l~~P~i~~c----~~Lr~~~e~~f~sl~~~QpIGrlLFr~Fc~~~~~ 76 (591)
T KOG0986|consen 1 MMELENVVANTVYLKAREGSGGSPKGRSKKWKVLLQPHISSC----MQLRDSLELTFESLCEKQPIGRLLFRDFCENRPE 76 (591)
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccccccchhccCCCcHHH----HHHHHhhcccHHHHhccCcHHHHHHHHHHhcCch
Confidence 8999999999999999999999986664444 444999997 56999999999999 8899999999999999885
Q ss_pred CCchHhHHHHHHhhcccCCCccchHHHHHhhhhccc
Q psy17353 78 EPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIF 113 (125)
Q Consensus 78 e~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~ 113 (125)
+.+|++|||+|++||+++|+.|.+.|+.|++.++-
T Consensus 77 -~~~~i~Fl~~v~eYE~~~~~~r~~~~~~i~~~~l~ 111 (591)
T KOG0986|consen 77 -LRPAIEFLEEVKEYEKADDDERKDKARQILDAYLM 111 (591)
T ss_pred -hhhHHHHHHHHHHHhcCCcccchhhHHHHHHHHhh
Confidence 99999999999999999999999999999999886
No 2
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=98.74 E-value=1.4e-08 Score=69.28 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=53.0
Q ss_pred chhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-ccchHHHHHhhhhccccc
Q psy17353 54 NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SSFTAVFISIVDKTIFPF 115 (125)
Q Consensus 54 ~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~r~~~~~~i~~~~~~~~ 115 (125)
+|+.|.++|+|+.+|++||++.. ....+.||++|+.|....+ .++...|..|+++-|-|=
T Consensus 1 ~l~~il~d~~~~~~F~~fl~~~~--~~e~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~yi~~~ 61 (118)
T smart00315 1 SLESLLSDPIGRLLFREFLESEF--SEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPN 61 (118)
T ss_pred CHHHHhcChHHHHHHHHHHHHhc--chHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCC
Confidence 47788999999999999999866 3489999999999999887 899999999999988653
No 3
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=98.14 E-value=4.4e-06 Score=56.06 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=50.2
Q ss_pred chhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccC-CCccchHHHHHhhhhccc
Q psy17353 54 NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIK-KKSSFTAVFISIVDKTIF 113 (125)
Q Consensus 54 ~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a-~d~~r~~~~~~i~~~~~~ 113 (125)
+|++|.+.|.|..+|++||++.. ....+.||.+|++|.-. .++.+...++.|+++.|-
T Consensus 1 s~~~il~~~~~~~~F~~Fl~~~~--~~~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~ 59 (118)
T PF00615_consen 1 SFEKILEDPEGLELFKEFLEKEN--CEENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFIS 59 (118)
T ss_dssp -HHHHHHSHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHCChHHHHHHHHHHhHCC--CHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhc
Confidence 47889888999999999998865 44999999999999888 677888999999998873
No 4
>KOG3589|consensus
Probab=92.68 E-value=0.2 Score=39.48 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=55.8
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC---ccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK---SSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d---~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+-..+|+++.+-+.|+..|++|+.+.- =..=+.||-++++|-.... .+....+..|.++.|-|- -+.||.
T Consensus 76 ~w~~sf~~L~~~~~G~~~F~~fLk~e~--Seeni~FW~ace~~k~~~~~~~~~~~~~a~~i~~~f~~~~ap~~vn~ 149 (221)
T KOG3589|consen 76 SWAKSFEKLLADEAGRAVFAEFLKSEF--SEENLEFWLACEEFKKRRSEKSTKMSEKAKEIYEEFSAPAAPKEVNL 149 (221)
T ss_pred HHHHhHHHHhhChhhHHHHHHHHHHHh--hHhHHHHHHHHHHHHhCcCchhhhhhHHHHHHHHHHhccCCCCCCCC
Confidence 457889999999999999999998732 2235999999999987766 568899999999998872 134443
No 5
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=66.42 E-value=6.6 Score=30.09 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=33.6
Q ss_pred HHHHhhhccchhhh---hhhhhHHHHHHHHhhhcCCCCchHhHHHH
Q psy17353 45 KYLEKKNEVNFDKI---FNQVIGYILFKDFCENCCDEPVPQLKFYE 87 (125)
Q Consensus 45 ~~Lr~~~e~~F~sI---~~QPIGr~LFrqFc~t~~ee~~~~i~Fld 87 (125)
++|.+.-.+.|+.+ -+-|||| |.+|++..-+ +...+++|.
T Consensus 14 ~~L~~~~GI~Fn~L~titNmPI~R--F~~~L~~~g~-~~~Ym~lL~ 56 (134)
T PF12345_consen 14 RELKERFGIVFNNLFTITNMPIGR--FGSFLERSGN-LEDYMELLV 56 (134)
T ss_pred HHHHHhcCceecchhhhhcCcHHH--HHHHHHHccC-HHHHHHHHH
Confidence 56777788999988 6899998 7899998774 888888885
No 6
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=58.76 E-value=10 Score=26.00 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=37.4
Q ss_pred chhhh--hhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhh
Q psy17353 54 NFDKI--FNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVD 109 (125)
Q Consensus 54 ~F~sI--~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~ 109 (125)
++..+ ..+-+|..+|..+.+..|+ +...-...+.+.. ++..+......+..|++
T Consensus 11 sw~~~~~~~~~~g~~~f~~lf~~~P~-~~~~F~~~~~~~~-~~~~~~~~~~~~~~~~~ 66 (140)
T cd01040 11 SWAKLKADREEIGLEFYERLFKAHPE-TRALFSRFGGLSA-ALKGSPKFKAHGKRVLN 66 (140)
T ss_pred HHHHHHccHHhHHHHHHHHHHHHChh-HHHHhHHhCCchH-hHccCHHHHHHHHHHHH
Confidence 44455 4688899999999998885 7776666665555 66666666666665553
No 7
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=45.90 E-value=3.6 Score=31.64 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=25.4
Q ss_pred HhhhhcCCCCccccccccccCCCCcchhhhHHHHHhhhccc
Q psy17353 14 LMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVN 54 (125)
Q Consensus 14 L~Are~~~~~~~~r~sKKL~LP~iS~c~~mc~~Lr~~~e~~ 54 (125)
|-+-+.|||+.+++=++++.+||+|. --.++..+...
T Consensus 6 lG~pGaGK~T~A~~La~~~~i~hlst----gd~~r~~~~~~ 42 (178)
T COG0563 6 LGPPGAGKSTLAKKLAKKLGLPHLDT----GDILRAAIAER 42 (178)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcEEcH----hHHhHhhhccC
Confidence 33456778888777788899999995 24566554433
No 8
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=31.18 E-value=22 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=6.9
Q ss_pred HHhhhcCCCCchHhHHHHHHhhc
Q psy17353 70 DFCENCCDEPVPQLKFYEEVRTH 92 (125)
Q Consensus 70 qFc~t~~ee~~~~i~Fld~I~~Y 92 (125)
+||+.++- .+.+.+++++|++|
T Consensus 65 ~YL~ENS~-mkKa~k~lKeikd~ 86 (88)
T PF09639_consen 65 EYLEENSM-MKKAYKFLKEIKDW 86 (88)
T ss_dssp HHHHHHT--S-------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHh
Confidence 78988885 99999999999987
No 9
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=29.06 E-value=35 Score=22.68 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=32.8
Q ss_pred chhhh--hhhhhHHHHHHHHhhhcCCCCchHhH-HHHHHhhcccCCCccchHHHHHhhh
Q psy17353 54 NFDKI--FNQVIGYILFKDFCENCCDEPVPQLK-FYEEVRTHSIKKKSSFTAVFISIVD 109 (125)
Q Consensus 54 ~F~sI--~~QPIGr~LFrqFc~t~~ee~~~~i~-Fld~I~~Ye~a~d~~r~~~~~~i~~ 109 (125)
++..| ..+-+|..+|..+.+..|+ ++..-. |-+....-++..+......+..|++
T Consensus 8 sW~~v~~~~~~~g~~~f~~lF~~~P~-~~~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~ 65 (110)
T PF00042_consen 8 SWAKVKPDKDEFGSEFFQRLFEEYPD-YKKLFPKFKDIVPLEELKNNPEFKAHAQRVME 65 (110)
T ss_dssp HHHHHHTGHHHHHHHHHHHHHHHSGG-GGGGGTTGTTTSSHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHCHH-HHhhcccccccchHHHHhccchHHHHHHHHHH
Confidence 34455 4577899999998888885 766555 4221223344445555566655554
No 10
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=27.41 E-value=25 Score=24.91 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=8.4
Q ss_pred cceeeecCCC
Q psy17353 114 PFRCWVNTST 123 (125)
Q Consensus 114 ~~~~~~~~~~ 123 (125)
.||||.||+-
T Consensus 87 ~f~~~FnT~F 96 (134)
T PF10409_consen 87 MFRFWFNTGF 96 (134)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEEEeeee
Confidence 7899999973
No 11
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=26.41 E-value=34 Score=23.83 Aligned_cols=42 Identities=14% Similarity=-0.056 Sum_probs=30.9
Q ss_pred hHhHHHHHHhhcccCCCccchHHHHHhhhhccccceeeecCC
Q psy17353 81 PQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPFRCWVNTS 122 (125)
Q Consensus 81 ~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~~~~~~~~~ 122 (125)
-|..+++||-.|....|++|.++-..+.++..--++-|.+.+
T Consensus 24 GC~Rt~~Ei~~W~~msd~Er~aVl~~l~qr~~r~~~~~~~~~ 65 (74)
T COG3313 24 GCGRTRDEIFNWSSMSDDERRAVLRLLPQRLARKQRRNKSRS 65 (74)
T ss_pred cccccHHHHHHHhhCCHHHHHHHHHHhHHHHHhccccccCcc
Confidence 377899999999999999999988877765322244444443
No 12
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=24.54 E-value=35 Score=32.03 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=40.5
Q ss_pred hhccchhhh-hhhhh-----HHHHHHHHhhhc-CCCCchHhHHHHHHhhcccCCCccchH----------HHHHhhhhcc
Q psy17353 50 KNEVNFDKI-FNQVI-----GYILFKDFCENC-CDEPVPQLKFYEEVRTHSIKKKSSFTA----------VFISIVDKTI 112 (125)
Q Consensus 50 ~~e~~F~sI-~~QPI-----Gr~LFrqFc~t~-~ee~~~~i~Fld~I~~Ye~a~d~~r~~----------~~~~i~~~~~ 112 (125)
.+-.+.--+ -.|+| .--||+||+.|. ++-+..+...+.+|.........+..- .-.++++-++
T Consensus 246 llK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L 325 (677)
T PF05664_consen 246 LLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVL 325 (677)
T ss_pred HHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHH
Confidence 334444455 56776 567899999985 333555788888887554421121111 1133666666
Q ss_pred ccceeee
Q psy17353 113 FPFRCWV 119 (125)
Q Consensus 113 ~~~~~~~ 119 (125)
-+...|+
T Consensus 326 ~si~~W~ 332 (677)
T PF05664_consen 326 SSIQGWA 332 (677)
T ss_pred HHHHHHH
Confidence 6666664
No 13
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=23.63 E-value=72 Score=23.88 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhhhhcCCCCccccccccccCCCCcchhhhHHHHHhhhccchhh-------hhhhhhHHHHHHHHhhh
Q psy17353 3 DLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDK-------IFNQVIGYILFKDFCEN 74 (125)
Q Consensus 3 ~LE~vvANtayL~Are~~~~~~~~r~sKKL~LP~iS~c~~mc~~Lr~~~e~~F~s-------I~~QPIGr~LFrqFc~t 74 (125)
+|+.|+.--.-|... +.+.-|+ .|+. -|+.|+..+++..++. ++..+||+.+|+.|.-+
T Consensus 11 ~l~e~~~ri~~L~~~----~~~~wGk--------ms~~-Qml~Hc~~~~~~s~~g~~~~k~~~~~~~lgk~~~~~~~~~ 76 (152)
T PF07606_consen 11 DLDEIINRINRLTPD----TQPQWGK--------MSVS-QMLAHCAQSIEMSMEGYPFPKPAWFRRTLGKLAFKKFVVR 76 (152)
T ss_pred CHHHHHHHHHHhCcC----CCCCcCC--------cCHH-HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHccC
Confidence 566666665555433 2222232 2332 3788999988887653 35678899999999865
No 14
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=22.62 E-value=38 Score=21.26 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=25.3
Q ss_pred CchHhHHHHHHhhcccCCCccchHHHHHhhh
Q psy17353 79 PVPQLKFYEEVRTHSIKKKSSFTAVFISIVD 109 (125)
Q Consensus 79 ~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~ 109 (125)
..-|...++||..|....++.|.++-..+..
T Consensus 17 C~GC~RT~dEI~~W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 17 CRGCGRTLDEIRDWKSMSDDERRAILARLRA 47 (51)
T ss_pred cCCCCCcHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4458889999999999999888887776654
No 15
>KOG3330|consensus
Probab=21.45 E-value=1e+02 Score=24.76 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhhhcCCCCchHhHHHH
Q psy17353 62 VIGYILFKDFCENCCDEPVPQLKFYE 87 (125)
Q Consensus 62 PIGr~LFrqFc~t~~ee~~~~i~Fld 87 (125)
-||-||-.+|+.. . ..-+|.+|.+
T Consensus 52 NiG~RLiedFLAk-s-~vpRC~dfre 75 (183)
T KOG3330|consen 52 NIGIRLIEDFLAK-S-NVPRCVDFRE 75 (183)
T ss_pred hhhHHHHHHHHhh-c-CCchhhhHHH
Confidence 4999999999986 4 3888999985
Done!