Query psy17353
Match_columns 125
No_of_seqs 111 out of 156
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:08:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2acx_A G protein-coupled recep 100.0 2.9E-33 1E-37 243.3 5.7 107 2-114 1-112 (576)
2 3v5w_A G-protein coupled recep 100.0 6.3E-32 2.2E-36 241.4 5.5 114 1-114 1-115 (689)
3 3c4z_A Rhodopsin kinase; Ser/T 99.9 1.2E-26 4E-31 199.6 6.3 109 1-114 3-117 (543)
4 2crp_A RGS5, regulator of G-pr 99.3 5.4E-12 1.9E-16 91.6 7.0 93 21-121 1-95 (150)
5 2a72_A Regulator of G-protein 98.7 1.9E-08 6.7E-13 72.4 6.7 70 50-121 12-82 (146)
6 1fqi_A RGS9, regulator of G-pr 98.7 1.9E-08 6.5E-13 72.7 6.0 70 50-121 20-90 (147)
7 2bv1_A Regulator of G-protein 98.7 2.3E-08 7.9E-13 71.9 6.1 70 50-121 21-91 (145)
8 2oj4_A RGS3, regulator of G-pr 98.7 1.8E-08 6.1E-13 70.3 4.9 70 50-121 6-77 (127)
9 1zv4_X RGS17, regulator of G-p 98.7 2.7E-08 9.4E-13 73.2 5.4 71 50-122 32-104 (158)
10 3c7l_A Regulator of G-protein 98.6 3.2E-08 1.1E-12 70.8 4.8 69 51-121 18-88 (137)
11 2dlv_A RGS18, regulator of G-p 98.6 4.4E-08 1.5E-12 69.6 5.5 70 50-121 14-85 (140)
12 2dlr_A RGS10, regulator of G-p 98.6 2.7E-08 9.1E-13 71.9 4.2 70 51-122 15-86 (149)
13 2ihd_A RGS8, regulator of G-pr 98.6 4.2E-08 1.4E-12 71.8 5.3 70 50-121 34-105 (155)
14 2ihb_B Regulator of G-protein 98.6 3.3E-08 1.1E-12 71.8 4.6 71 50-122 30-102 (153)
15 1cmz_A Protein (GAIP (G-alpha 98.6 6E-08 2.1E-12 70.1 5.9 71 50-122 19-91 (152)
16 2af0_A Regulator of G-protein 98.6 5.5E-08 1.9E-12 69.9 5.4 70 50-121 22-93 (146)
17 2jnu_A RGS14, regulator of G-p 98.6 9.2E-08 3.1E-12 69.5 5.6 71 50-122 10-84 (154)
18 1dk8_A Axin; alpha-helix, PI-h 98.6 4.6E-08 1.6E-12 70.1 3.9 63 50-114 11-79 (147)
19 2ebz_A RGS12, regulator of G-p 98.5 5.7E-08 1.9E-12 70.7 4.5 70 51-122 15-88 (155)
20 2jm5_A RGS18, regulator of G-p 98.5 9E-08 3.1E-12 69.4 5.5 70 50-121 10-81 (151)
21 1agr_E RGS4; GI-alpha-1, hydro 98.5 1.1E-07 3.9E-12 73.4 6.0 70 50-121 58-129 (205)
22 2pbi_A Regulator of G-protein 98.2 1.3E-06 4.4E-11 74.6 6.0 70 50-121 297-367 (424)
23 3qf7_D MRE11; ABC-ATPase, ATPa 36.8 27 0.00091 21.5 2.6 26 65-90 10-35 (50)
24 1tx4_A P50-rhogap; complex (GT 23.9 1.8E+02 0.006 20.9 5.7 43 67-110 84-126 (198)
25 3b1j_C CP12; alpha/beta fold, 21.7 40 0.0014 18.1 1.3 10 68-77 7-16 (26)
26 2cmy_B Beta trypsin, veronica 20.3 27 0.00092 19.9 0.4 14 36-49 3-16 (34)
No 1
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.97 E-value=2.9e-33 Score=243.27 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=81.1
Q ss_pred CchhHHHHHHHHHhhhhcCCCCcccccccc----ccCCCCcchhhhHHHHHhhhccchhhh-hhhhhHHHHHHHHhhhcC
Q psy17353 2 ADLEAVLADVSYLMAMEKSKCTPAARASKK----IVLPDPSVRSVMHKYLEKKNEVNFDKI-FNQVIGYILFKDFCENCC 76 (125)
Q Consensus 2 ~~LE~vvANtayL~Are~~~~~~~~r~sKK----L~LP~iS~c~~mc~~Lr~~~e~~F~sI-~~QPIGr~LFrqFc~t~~ 76 (125)
|+|||||||++||+||+||++++++| ||| |+|||+|+| ++|+.+++++|++| ++|||||+||+|||+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~ 75 (576)
T 2acx_A 1 MELENIVANTVLLKAREGGGGNRKGK-SKKWRQMLQFPHISQC----EELRLSLERDYHSLCERNPIGRLLFREFCATRP 75 (576)
T ss_dssp -------------CC-------CCCC-CTTHHHHTCCCCSGGG----HHHHHHSCCCHHHHHTTSHHHHHHHHHHHTTSH
T ss_pred CChHHhhhhHHHHHHHhcCCCCcccc-ccccccccCCCCchHH----HHHHhccccCHHHhhccCchhHHHHHHHHhcCc
Confidence 79999999999999999888887555 788 999999998 69999999999999 899999999999999998
Q ss_pred CCCchHhHHHHHHhhcccCCCccchHHHHHhhhhcccc
Q psy17353 77 DEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFP 114 (125)
Q Consensus 77 ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~ 114 (125)
+ +++|++||++|++||+++|++|.+.|+.|+++.+-|
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (576)
T 2acx_A 76 E-LSRCVAFLDGVAEYEVTPDDKRKACGRNLTQNFLSH 112 (576)
T ss_dssp H-HHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHSCS
T ss_pred c-hhHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCc
Confidence 4 999999999999999999999999999999987655
No 2
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.97 E-value=6.3e-32 Score=241.40 Aligned_cols=114 Identities=60% Similarity=0.910 Sum_probs=78.2
Q ss_pred CCchhHHHHHHHHHhhhhcCCCCccccccccccCCCCcchhhhHHHHHhhhccchhhhhhhhhHHHHHHHHhhhcCCCCc
Q psy17353 1 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEPV 80 (125)
Q Consensus 1 m~~LE~vvANtayL~Are~~~~~~~~r~sKKL~LP~iS~c~~mc~~Lr~~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~ 80 (125)
||+|||||||||||+|||+|++.+++|.+|||+||+|++|++|+++|+..++++|++|++|||||+||+|||.+..++++
T Consensus 1 m~~l~~i~a~~~~l~a~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~q~ig~~~f~~f~~~~~~~~~ 80 (689)
T 3v5w_A 1 MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLNHLEEAR 80 (689)
T ss_dssp -----------------------------CCCCCCCTTHHHHHHHHHHHTTCCSHHHHHTSHHHHHHHHHHHHHHCGGGH
T ss_pred CCccchhHhhHHHHHHhccCCCCcchhhhhhhhCCCchHHHHHHHHHhhccccccceecCccHHHHHHHHHhcCcchhhh
Confidence 89999999999999999999988877878889999999999999999999999999998899999999999977655699
Q ss_pred hHhHHHHHHhhccc-CCCccchHHHHHhhhhcccc
Q psy17353 81 PQLKFYEEVRTHSI-KKKSSFTAVFISIVDKTIFP 114 (125)
Q Consensus 81 ~~i~Fld~I~~Ye~-a~d~~r~~~~~~i~~~~~~~ 114 (125)
+|++||++|++||. ..|++|.+.+++|+++.+-+
T Consensus 81 ~~~~~~~~v~~~~~~~~~~~r~~~~~~i~~~~~~~ 115 (689)
T 3v5w_A 81 PLVEFYEEIKKYEKLETEEERVARSREIFDSYIMK 115 (689)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHHhcch
Confidence 99999999999995 55889999999999988764
No 3
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.93 E-value=1.2e-26 Score=199.61 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHhhhhcC-CCCcccccccc----ccCCCCcchhhhHHHHHhhhccchhhh-hhhhhHHHHHHHHhhh
Q psy17353 1 MADLEAVLADVSYLMAMEKS-KCTPAARASKK----IVLPDPSVRSVMHKYLEKKNEVNFDKI-FNQVIGYILFKDFCEN 74 (125)
Q Consensus 1 m~~LE~vvANtayL~Are~~-~~~~~~r~sKK----L~LP~iS~c~~mc~~Lr~~~e~~F~sI-~~QPIGr~LFrqFc~t 74 (125)
||+|||||||++||+||++. |+.+++++||| |+|||+|+| .+|+.++++||.++ .+||||++||+|||.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~----~~l~~~~~~d~~~~~~~~~ig~~~~~~f~~t 78 (543)
T 3c4z_A 3 FGSLETVVANSAFIAARGSFDASSGPASRDRKYLARLKLPPLSKC----EALRESLDLGFEGMCLEQPIGKRLFQQFLRT 78 (543)
T ss_dssp ----------------------------CCHHHHTTCCCCCGGGG----HHHHHHSCCCHHHHHTSSHHHHHHHHHHHHH
T ss_pred hhhhHHHhhhHHHHHhccCcCCCCcccccCcccccccCCCCchHH----HHHHhccccCHHHhhccCcccHHHHHHHHhc
Confidence 89999999999999999531 23344666887 999999997 79999999999999 8999999999999999
Q ss_pred cCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhhcccc
Q psy17353 75 CCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFP 114 (125)
Q Consensus 75 ~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~ 114 (125)
.++ +.++.+||+.|++|+.+.+++|.+.++.|+++.+-+
T Consensus 79 ~~~-~~~~~~~~~~i~e~~~~~~~~~~~~~~~l~~~~~~~ 117 (543)
T 3c4z_A 79 HEQ-HGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEP 117 (543)
T ss_dssp CGG-GHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHTST
T ss_pred CCc-hhHHHHHHhhhhhhccCchhhHHHHHHHHHHHhhCc
Confidence 985 999999999999999999999999999999886543
No 4
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.4e-12 Score=91.55 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=77.2
Q ss_pred CCCccccccccccCCCCcchhhhHHHHHhhhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-cc
Q psy17353 21 KCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SS 99 (125)
Q Consensus 21 ~~~~~~r~sKKL~LP~iS~c~~mc~~Lr~~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~ 99 (125)
|.+|++|.+|+..+|.+|..+|+ +...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ ++
T Consensus 1 ~~~~~~~~~~~~~~~~~s~~~~~------~w~~sl~~iL~~~~g~~~F~~Fl~~e~--s~Enl~Fw~~ve~yk~~~~~~~ 72 (150)
T 2crp_A 1 GSSGSSGPEKPAKTQKTSLDEAL------QWRDSLDKLLQNNYGLASFKSFLKSEF--SEENLEFWIACEDYKKIKSPAK 72 (150)
T ss_dssp CCCCCCCCCCCCCCCCCCHHHHT------HHHHCHHHHHHSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCCCTTH
T ss_pred CCCCCCCCccCccCCCCCHHHHH------HHHHhHHHHHCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHccCCHHH
Confidence 34677888999999999996432 255689999999999999999999853 6679999999999999875 78
Q ss_pred chHHHHHhhhhccccc-eeeecC
Q psy17353 100 FTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 100 r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+.+.|+.|+++.|-|- .+.||.
T Consensus 73 ~~~~a~~Iy~~yi~~~s~~evNi 95 (150)
T 2crp_A 73 MAEKAKQIYEEFIQTEAPKEVNI 95 (150)
T ss_dssp HHHHHHHHHHHTSSTTCSSCCSC
T ss_pred HHHHHHHHHHHHccCCCCccCCC
Confidence 9999999999998764 345654
No 5
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=98.74 E-value=1.9e-08 Score=72.41 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=60.9
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhhccccce-eeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPFR-CWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~~~-~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....++++.+.|+.|+++-|-|-- +.||.
T Consensus 12 ~w~~sl~~iL~~p~g~~~F~~Fl~~e~--~~Enl~Fw~~ve~~k~~~~~~~~~~a~~Iy~~yi~~~s~~evNi 82 (146)
T 2a72_A 12 RWGFGMDEALKDPVGREQFLKFLESEF--SSENLRFWLAVEDLKKRPIKEVPSRVQEIWQEFLAPGAPSAINL 82 (146)
T ss_dssp HGGGCHHHHHHSHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhHHHHHhCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCCcccCCC
Confidence 467899999999999999999999854 67799999999999999888999999999999988732 45554
No 6
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=98.72 E-value=1.9e-08 Score=72.67 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=60.9
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|++|.++|+|+.+|++||++. .....+.||.+|++|...+++++.+.|+.|+++-|-|- .+.||.
T Consensus 20 ~w~~sl~~iL~~p~g~~~F~~FL~~e--~~~enl~Fw~~ve~~k~~~~~~~~~~a~~Iy~~yi~~~s~~evni 90 (147)
T 1fqi_A 20 RWAFNFSELIRDPKGRQSFQHFLRKE--FSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINI 90 (147)
T ss_dssp HTTTCHHHHHTSHHHHHHHHHHHHHT--TCTHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhHHHHHHCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 37889999999999999999999985 26789999999999999988999999999999998764 245554
No 7
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=98.71 E-value=2.3e-08 Score=71.95 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=60.6
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhhccccce-eeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPFR-CWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~~~-~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+.++.+.|+.|+++-|-|-- +.||.
T Consensus 21 ~~~~sl~~iL~~p~g~~~F~~FL~~e~--s~Enl~Fw~~ve~yk~~~~~~~~~~a~~Iy~~yi~~~s~~evni 91 (145)
T 2bv1_A 21 QWSQSLEKLLANQTGQNVFGSFLKSEF--SEENIEFWLACEDYKKTESDLLPCKAEEIYKAFVHSDAAKQINI 91 (145)
T ss_dssp HTTTCHHHHHHSHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHHhHHHHHCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCCCCcccCc
Confidence 467899999999999999999999854 46799999999999999888899999999999987742 45554
No 8
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=98.69 E-value=1.8e-08 Score=70.32 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=58.6
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccC-CCccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIK-KKSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a-~d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+-..+|+.|.++|+|+.+|++||++.. ....+.||.+|++|... +++++.+.|+.|+++-|-|- .+.||.
T Consensus 6 ~w~~sl~~iL~~~~g~~~F~~Fl~~e~--~~enl~Fw~~ve~~k~~~~~~~~~~~a~~I~~~yi~~~s~~evni 77 (127)
T 2oj4_A 6 KWGESLEKLLVHKYGLAVFQAFLRTEF--SEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNL 77 (127)
T ss_dssp HHTTCHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhHHHHHHCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCCCCcCccC
Confidence 356789999999999999999999853 66799999999999987 45789999999999998873 245654
No 9
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=98.66 E-value=2.7e-08 Score=73.18 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=59.9
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-ccchHHHHHhhhhccccc-eeeecCC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SSFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ +++.+.|+.|+++.|-|- .+.||.+
T Consensus 32 ~w~~sl~~iL~dp~g~~~F~~FL~~e~--s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~ 104 (158)
T 1zv4_X 32 SWSQNFDKMMKAPAGRNLFREFLRTEY--SEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKEVSLD 104 (158)
T ss_dssp HHTTCHHHHHTSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCC-CCCCCCC
T ss_pred HHHhhHHHHhCCHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCCCCceeecC
Confidence 466899999999999999999999853 6679999999999998766 678999999999998874 2566643
No 10
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=98.63 E-value=3.2e-08 Score=70.76 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=58.7
Q ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-ccchHHHHHhhhhccccc-eeeecC
Q psy17353 51 NEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 51 ~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ +++.+.|+.|+++-|-|- .+.||.
T Consensus 18 w~~sl~~iL~~p~g~~~F~~Fl~~e~--s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi 88 (137)
T 3c7l_A 18 WRESFDLLLNSKNGVAAFHAFLKTEF--SEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNI 88 (137)
T ss_dssp HHHCHHHHTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhHHHHHCChHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCCccCCC
Confidence 56789999999999999999999854 4668999999999999886 789999999999998764 345654
No 11
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=4.4e-08 Score=69.62 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=59.5
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-ccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ +++.+.|+.|+++-|-|- .+.||.
T Consensus 14 ~w~~sl~~iL~~~~~~~~F~~Fl~~e~--s~enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni 85 (140)
T 2dlv_A 14 KWGESFDKLLSHRDGLEAFTRFLKTEF--SEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNL 85 (140)
T ss_dssp HHTTCHHHHHHSHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSTTCCCC
T ss_pred HHHHhHHHHHCChHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCccccCC
Confidence 467889999889999999999999854 4679999999999999875 689999999999998763 245554
No 12
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=2.7e-08 Score=71.91 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=59.5
Q ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCc-cchHHHHHhhhhccccc-eeeecCC
Q psy17353 51 NEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKS-SFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 51 ~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~-~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+. ++.+.|+.|+++.|-|- .+.||.+
T Consensus 15 w~~sl~~iL~~~~g~~~F~~FL~~e~--~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~ 86 (149)
T 2dlr_A 15 WAASLENLLEDPEGVKRFREFLKKEF--SEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVE 86 (149)
T ss_dssp HHHCHHHHHHSHHHHHHHHHHHHHHT--CTHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTTSSTTCSSCCCCS
T ss_pred HHHhHHHHHCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCccccCC
Confidence 45689999999999999999999854 67899999999999987765 89999999999998863 2566653
No 13
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=98.61 E-value=4.2e-08 Score=71.83 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=59.6
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCC-CccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKK-KSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~-d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|.... ++++.+.|+.|+++-|-|- .+.||.
T Consensus 34 ~w~~sl~~iL~dp~g~~~F~~FL~~e~--s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNI 105 (155)
T 2ihd_A 34 RWADSFDVLLSHKYGVAAFRAFLKTEF--SEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNI 105 (155)
T ss_dssp HTTSCHHHHHTSHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHHhHHHHHCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCccccCC
Confidence 467899999999999999999999854 467999999999999887 5689999999999998764 345554
No 14
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=98.61 E-value=3.3e-08 Score=71.81 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=59.6
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCc-cchHHHHHhhhhccccc-eeeecCC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKS-SFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~-~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+. ++.+.|+.|+++.|-|- -+.||.+
T Consensus 30 ~w~~sl~~iL~dp~g~~~F~~FL~~e~--~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~ 102 (153)
T 2ihb_B 30 KWAASLENLLEDPEGVKRFREFLKKEF--SEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVE 102 (153)
T ss_dssp HHHHCHHHHHHSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSTTCTTCCCCC
T ss_pred HHHHhHHHHHCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCCCccCCCC
Confidence 355689999999999999999999854 66799999999999998776 89999999999998763 2455543
No 15
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=98.61 E-value=6e-08 Score=70.09 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=59.8
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCC-CccchHHHHHhhhhccccc-eeeecCC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKK-KSSFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~-d~~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|.... ++++.+.|+.|+++.|-|- .+.||.+
T Consensus 19 ~~~~sl~~iL~~p~~~~~F~~Fl~~e~--s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~ 91 (152)
T 1cmz_A 19 SWAQSFDKLMHSPAGRSVFRAFLRTEY--SEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLD 91 (152)
T ss_dssp HHTTCSHHHHSSHHHHHHHHHHHHHHT--CCHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHTTTCSSSCCCSCC
T ss_pred HHHhhHHHHHCChHHHHHHHHHHHHhc--ChhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCceeeCC
Confidence 467889999999999999999999854 467999999999999876 4688999999999999873 2566643
No 16
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=98.60 E-value=5.5e-08 Score=69.88 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCC-CccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKK-KSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~-d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|.... ++++.+.|+.|+++-|-|- .+.||.
T Consensus 22 ~w~~sl~~iL~~p~g~~~F~~Fl~~e~--s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi 93 (146)
T 2af0_A 22 LWSEAFDELLASKYGLAAFRAFLKSEF--CEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINI 93 (146)
T ss_dssp HTTTCHHHHHHSHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhHHHHHHCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCCcccCc
Confidence 467889999999999999999999854 467999999999999887 5689999999999998774 245554
No 17
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.55 E-value=9.2e-08 Score=69.54 Aligned_cols=71 Identities=11% Similarity=0.204 Sum_probs=59.3
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC---ccchHHHHHhhhhccccc-eeeecCC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK---SSFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d---~~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
+-..+|+.|.++|+|+.+|++||++. .....+.||.+|++|....+ +++.+.|+.|+++.|-|- -+.||.+
T Consensus 10 ~w~~sl~~iL~dp~g~~~F~~FL~~e--~~~Enl~Fw~~ve~~k~~~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~ 84 (154)
T 2jnu_A 10 SWALSFERLLQDPLGLAYFTEFLKKE--FSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSPVNID 84 (154)
T ss_dssp GGGTCHHHHHHSHHHHHHHHHHTTTS--SCTHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTSTTCSSCCCSC
T ss_pred HHHHhHHHHHCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCcccCCc
Confidence 35678999999999999999999974 26779999999999998765 468899999999999874 2566644
No 18
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=98.55 E-value=4.6e-08 Score=70.08 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=54.7
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccC-----CCccchHHHHHhhhhcc-cc
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIK-----KKSSFTAVFISIVDKTI-FP 114 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a-----~d~~r~~~~~~i~~~~~-~~ 114 (125)
+...+|+.|.++|+|+.+|++||++. .....+.||.+|++|... .++++.+.|+.|+++-| -|
T Consensus 11 ~w~~sl~~iL~~p~g~~~F~~FL~~e--~~~enl~Fw~~ve~~k~~~~~~~~~~~~~~~a~~Iy~~yi~~~ 79 (147)
T 1dk8_A 11 KWAESLHSLLDDQDGISLFRTFLKQE--GCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDN 79 (147)
T ss_dssp HHHHCHHHHTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHTSCT
T ss_pred HHHhCHHHHHCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHhCCc
Confidence 35678999999999999999999975 378899999999999887 34588999999999998 54
No 19
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=5.7e-08 Score=70.72 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC---ccchHHHHHhhhhccccc-eeeecCC
Q psy17353 51 NEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK---SSFTAVFISIVDKTIFPF-RCWVNTS 122 (125)
Q Consensus 51 ~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d---~~r~~~~~~i~~~~~~~~-~~~~~~~ 122 (125)
...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ +++.+.|+.|+++.|-|- .+.||.+
T Consensus 15 w~~sl~~iL~~p~g~~~F~~FL~~e~--~~Enl~Fw~~ve~yk~~~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~ 88 (155)
T 2ebz_A 15 WAVSFERLLQDPVGVRYFSDFLRKEF--SEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTPVNID 88 (155)
T ss_dssp HHHCHHHHHHSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHSSSSCSSCCSSC
T ss_pred HHHhHHHHHCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCCccCCC
Confidence 56789999999999999999999853 6779999999999998754 468889999999999863 3566653
No 20
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=98.55 E-value=9e-08 Score=69.38 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=59.4
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCC-ccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKK-SSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d-~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|....+ +++.+.|+.|+++-|-|- -+.||.
T Consensus 10 ~w~~sl~~iL~~p~g~~~F~~FL~~e~--s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi 81 (151)
T 2jm5_A 10 KWGESFDKLLSHRDGLEAFTRFLKTEF--SEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNL 81 (151)
T ss_dssp HHTTCHHHHHHSHHHHHHHHHHHHHTT--CTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTTCSSSSSCCCC
T ss_pred HHHHhHHHHHCChHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHccCcchhhcCC
Confidence 467889999889999999999999854 3568999999999999876 689999999999998874 255664
No 21
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=98.53 E-value=1.1e-07 Score=73.42 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=60.1
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCC-CccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKK-KSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~-d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++.. ....+.||.+|++|.... ++++.+.|+.|+++.|-|- .+.||.
T Consensus 58 ~w~~sle~IL~dp~g~~~F~~FL~~e~--s~EnL~Fw~ave~yk~~~~~~~~~~~A~~Iy~~YI~~~Sp~evNI 129 (205)
T 1agr_E 58 KWAESLENLINHECGLAAFKAFLKSEY--SEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNL 129 (205)
T ss_dssp HHTTCHHHHHHSHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHHHCCCTTTHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred HHHhhHHHHhcCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCchhhhc
Confidence 467899999999999999999999854 678999999999999877 6789999999999998764 245554
No 22
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=98.24 E-value=1.3e-06 Score=74.61 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred hhccchhhhhhhhhHHHHHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhhccccc-eeeecC
Q psy17353 50 KNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPF-RCWVNT 121 (125)
Q Consensus 50 ~~e~~F~sI~~QPIGr~LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~~~~~~-~~~~~~ 121 (125)
+...+|+.|.++|+|+.+|++||++. .....+.||.+|++|...+++++.+.|+.|+++.|-|- -+.||.
T Consensus 297 ~w~~sle~LL~dp~g~~~F~~FL~~e--~s~EnL~Fwlave~fk~~~~~~~~~~A~~Iy~~YI~~~Sp~eVNI 367 (424)
T 2pbi_A 297 RWAFNFSELIRDPKGRQSFQYFLKKE--FSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLAPGARRWINI 367 (424)
T ss_dssp HTTTCHHHHHHSHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred hhhcCHHHHHCCHHHHHHHHHHHHHh--CChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCccccCC
Confidence 45679999999999999999999984 36779999999999999999999999999999999874 256664
No 23
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=36.76 E-value=27 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=20.0
Q ss_pred HHHHHHHhhhcCCCCchHhHHHHHHh
Q psy17353 65 YILFKDFCENCCDEPVPQLKFYEEVR 90 (125)
Q Consensus 65 r~LFrqFc~t~~ee~~~~i~Fld~I~ 90 (125)
.-||++|+.++.+.....++.+|++-
T Consensus 10 felfkey~k~r~~~he~l~k~~~ell 35 (50)
T 3qf7_D 10 FELFKEYLKKREENHEKLLKILDELL 35 (50)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35899999997766778888777654
No 24
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=23.87 E-value=1.8e+02 Score=20.92 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCCCchHhHHHHHHhhcccCCCccchHHHHHhhhh
Q psy17353 67 LFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDK 110 (125)
Q Consensus 67 LFrqFc~t~~ee~~~~i~Fld~I~~Ye~a~d~~r~~~~~~i~~~ 110 (125)
+++.|+..=|+ ..-..++++++-+-...+++.|.+..+.++.+
T Consensus 84 lLK~flreLpe-PLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~ 126 (198)
T 1tx4_A 84 ILKTFLRELPE-PLLTFDLYPHVVGFLNIDESQRVPATLQVLQT 126 (198)
T ss_dssp HHHHHHHHSSS-CTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHHCCC-cCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999998885 66666777776554334566777777777654
No 25
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=21.67 E-value=40 Score=18.08 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=8.8
Q ss_pred HHHHhhhcCC
Q psy17353 68 FKDFCENCCD 77 (125)
Q Consensus 68 FrqFc~t~~e 77 (125)
|.+||+..|+
T Consensus 7 lE~yC~enPe 16 (26)
T 3b1j_C 7 FGDYCSENPD 16 (26)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHCCC
Confidence 7899999986
No 26
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=20.29 E-value=27 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=6.8
Q ss_pred CCcchhhhHHHHHh
Q psy17353 36 DPSVRSVMHKYLEK 49 (125)
Q Consensus 36 ~iS~c~~mc~~Lr~ 49 (125)
+|.+|-|||-.-|.
T Consensus 3 dpeqckvmcyaqrh 16 (34)
T 2cmy_B 3 DPEQCKVMCYAQRH 16 (34)
T ss_dssp ----CHHHHHHBC-
T ss_pred ChHHhhHHHHHhhc
Confidence 46789999865443
Done!