RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17353
(125 letters)
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 142 bits (359), Expect = 8e-41
Identities = 63/91 (69%), Positives = 77/91 (84%)
Query: 1 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFN 60
MADLEAVLADVSYLMAMEKSK TPAARASKKI+LP+PS+RSVM KYLE + EV F+KIF+
Sbjct: 1 MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFS 60
Query: 61 QVIGYILFKDFCENCCDEPVPQLKFYEEVRT 91
Q +GY+LF+DFC +E P ++FYEE++
Sbjct: 61 QKLGYLLFRDFCLKHLEEAKPLVEFYEEIKK 91
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET:
ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 114 bits (286), Expect = 6e-31
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 3 DLEAVLADVSYLMAMEKSKCTPAARASK-KIVLPDPSVRSVMHKYLEKKNEVNFDKIF-N 60
+LE ++A+ L A E ++ K + +L P + L E ++ +
Sbjct: 2 ELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEE--LRLSLERDYHSLCER 59
Query: 61 QVIGYILFKDFCENCCDEPVPQLKFYEEV 89
IG +LF++FC E + F + V
Sbjct: 60 NPIGRLLFREFCATRP-ELSRCVAFLDGV 87
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 97.5 bits (243), Expect = 5e-25
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 1 MADLEAVLADVSYLMAMEK--SKCTPAARASK---KIVLPDPSVRSVMHKYLEKKNEVNF 55
LE V+A+ +++ A + PA+R K ++ LP S + + L ++ F
Sbjct: 3 FGSLETVVANSAFIAARGSFDASSGPASRDRKYLARLKLPPLSKCEALRESL----DLGF 58
Query: 56 DKI-FNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFP 114
+ + Q IG LF+ F ++ P L+ ++++ + + ++ + P
Sbjct: 59 EGMCLEQPIGKRLFQQFLRT-HEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEP 117
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 36.9 bits (85), Expect = 4e-04
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 22 CTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENC-CDEPV 80
+ ++ K S+ + + + DK+ G FK F ++ +E
Sbjct: 2 SSGSSGPEKPAKTQKTSLDEAL------QWRDSLDKLLQNNYGLASFKSFLKSEFSEEN- 54
Query: 81 PQLKFYEEVRTH 92
L+F+ +
Sbjct: 55 --LEFWIACEDY 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.005
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 49/135 (36%)
Query: 15 MAMEKSKCTPAAR-----ASK-----------KIVLPDPSVRSVMHKYLEKKNEVNFDKI 58
M M+ K + AA+ A IV+ +P ++F
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-----------VNLTIHFGGE 1679
Query: 59 FNQVI--GYILFKDFCENCCDEPVPQLKFYEEVRTHSIK----------KKSSFT--AVF 104
+ I Y E D + K ++E+ HS + FT A+
Sbjct: 1680 KGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 105 -ISIVDKTIFPFRCW 118
+ F
Sbjct: 1738 LMEKA-----AFEDL 1747
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 32.3 bits (73), Expect = 0.017
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 34 LPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTH 92
+ +PS + V K+ D+ +G F F E+ E L+F+ V
Sbjct: 2 MKEPSQQRV------KRWGFGMDEALKDPVGREQFLKFLESEFSSE---NLRFWLAVEDL 52
Query: 93 SIKKKSSFTAVFISIVDKTIFP 114
+ + I + + P
Sbjct: 53 KKRPIKEVPSRVQEIWQEFLAP 74
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 32.3 bits (73), Expect = 0.018
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 35 PDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTH 92
+P+ V NFDK+ G LF++F +E L F+
Sbjct: 23 MNPTAEEV------LSWSQNFDKMMKAPAGRNLFREFLRTEYSEEN---LLFWLACEDL 72
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 32.3 bits (73), Expect = 0.020
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 49 KKNEVNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTH-SIKKKSSFTAVFIS 106
+ +FDK+ + G +F+ F +E + F+ + +
Sbjct: 18 QSWAQSFDKLMHSPAGRSVFRAFLRTEYSEEN---MLFWLACEELKAEANQHVVDEKARL 74
Query: 107 IVDKTIFP 114
I + +
Sbjct: 75 IYEDYVSI 82
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 149
Score = 31.9 bits (72), Expect = 0.026
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 35 PDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTH 92
S++S K + + + G F++F + +E + F+
Sbjct: 5 SSGSLKST------AKWAASLENLLEDPEGVKRFREFLKKEFSEEN---VLFWLACEDF 54
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 31.5 bits (71), Expect = 0.036
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 35 PDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTHS 93
PS FD++ G F+ F + C+E + E+ +
Sbjct: 13 MKPSPEEAQLW------SEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTK 66
Query: 94 IKKKSSFTAVFI 105
+K S A I
Sbjct: 67 SPQKLSSKARKI 78
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 30.7 bits (69), Expect = 0.055
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 49 KKNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEV 89
+FD + N G F F + E L+F+
Sbjct: 16 LGWRESFDLLLNSKNGVAAFHAFLKTEFSE--ENLEFWLAC 54
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 30.5 bits (68), Expect = 0.11
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 53 VNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKT 111
NF ++ G F+ F + E L F+E +S I
Sbjct: 300 FNFSELIRDPKGRQSFQYFLKKEFSGEN---LGFWEACEDLKYGDQSKVKEKAEEIYKLF 356
Query: 112 IFP 114
+ P
Sbjct: 357 LAP 359
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 30.5 bits (68), Expect = 0.11
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 20 SKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEP 79
+ ++ K + S V + + + N G FK F ++ E
Sbjct: 34 EHSSSHSKKDKVVTCQRVSQEEVKK------WAESLENLINHECGLAAFKAFLKSEYSE- 86
Query: 80 VPQLKFYEEVRTH 92
+ F+ +
Sbjct: 87 -ENIDFWISCEEY 98
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 29.5 bits (66), Expect = 0.17
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 53 VNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTHSIKKKSSFTAVFI 105
+ +K+ G +F+ F +E + E+ + + K + A I
Sbjct: 9 ESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKI 62
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 29.2 bits (65), Expect = 0.22
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 53 VNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKT 111
NF ++ G F+ F E L F+E +S I
Sbjct: 23 FNFSELIRDPKGRQSFQHFLRKEFSGEN---LGFWEACEDLKYGDQSKVKEKAEEIYKLF 79
Query: 112 IFP 114
+ P
Sbjct: 80 LAP 82
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium,
SGC, signaling protein; 1.70A {Homo sapiens} PDB:
2ode_B* 2bt2_A
Length = 155
Score = 29.2 bits (65), Expect = 0.23
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 49 KKNEVNFDKIFNQVIGYILFKDFCE-NCCDEPVPQLKFYEEVRTH 92
+ +FD + + G F+ F + +E L+F+
Sbjct: 33 TRWADSFDVLLSHKYGVAAFRAFLKTEFSEEN---LEFWLACEEF 74
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 29.2 bits (65), Expect = 0.25
Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 49 KKNEVNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTHSIKKKSSFTAVFISI 107
+ + +K+ G +F F ++ +E ++F+ + + I
Sbjct: 20 MQWSQSLEKLLANQTGQNVFGSFLKSEFSEEN---IEFWLACEDYKKTESDLLPCKAEEI 76
Query: 108 VDKTIFP 114
+
Sbjct: 77 YKAFVHS 83
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 29.2 bits (65), Expect = 0.27
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 19 KSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE-NCCD 77
K + + S++S K + + + G F++F + +
Sbjct: 5 KRPPSDIHDSDGSSSSSHQSLKST------AKWAASLENLLEDPEGVKRFREFLKKEFSE 58
Query: 78 EPVPQLKFYEEVRTH-SIKKKSSFTAVFISIVDKTIFP 114
E + F+ ++ K+ I +
Sbjct: 59 EN---VLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSS 93
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 28.8 bits (64), Expect = 0.34
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 54 NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIF 113
+ + + G LF+ F + L F+ + + + I+
Sbjct: 15 SLHSLLDDQDGISLFRTFLKQEGCA--DLLDFWFACTGFRKLEPCDSNEEKRLKLARAIY 72
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 27.7 bits (61), Expect = 0.84
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 53 VNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTH 92
+FDK+ + G F F + +E ++F+
Sbjct: 13 ESFDKLLSHRDGLEAFTRFLKTEFSEEN---IEFWIACEDF 50
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 140
Score = 27.3 bits (60), Expect = 0.94
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 54 NFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTH 92
+FDK+ + G F F + +E ++F+
Sbjct: 18 SFDKLLSHRDGLEAFTRFLKTEFSEEN---IEFWIACEDF 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.0
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 10 DVSYLMAMEKSKCTPAARASKKIV-LPDPSVRS-VMHKYLEKKNEVNFDKIFNQVI--GY 65
D + M KS + I+ D + + L K E K +V+ Y
Sbjct: 34 DCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 66 ILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDK 110
+ +P + Y E R F +S +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Score = 27.9 bits (61), Expect = 1.1
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 64/166 (38%)
Query: 3 DLEAVLAD-VSYLMAMEKSKCTPAARASKKIVLPD--------PSVRSVMHK-----YLE 48
D+ V+ Y + ++ K I +P +H+ Y
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK-------ESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 49 KKNEVNFDKIFNQVIGYI----------------------LFKDF------------CEN 74
K + D I + Y +F DF N
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 75 CCDEPVP---QLKFYEEVRTHSIKKKSSFTAVFISIVDKTIFPFRC 117
+ QLKFY+ + + + +I+D F +
Sbjct: 516 ASGSILNTLQQLKFYKP---YICDNDPKYERLVNAILD---FLPKI 555
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 25.8 bits (57), Expect = 1.5
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 71 FCENCCD--EPVPQLKFYEEVR 90
FC+ P+P L YE VR
Sbjct: 37 FCQEHSSNSIPLPDLGIYEPVR 58
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of
G-protein signalling domain, structural genomics,
structural genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 26.2 bits (57), Expect = 2.9
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 53 VNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTHSIKKKSS 99
++F+++ +G F +F + E + F++ S
Sbjct: 13 LSFERLLQDPLGLAYFTEFLKKEFSAEN---VTFWKACERFQQIPASD 57
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 155
Score = 25.8 bits (56), Expect = 3.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 53 VNFDKIFNQVIGYILFKDFCENC-CDEPVPQLKFYEEVRTH 92
V+F+++ +G F DF +E + F++
Sbjct: 17 VSFERLLQDPVGVRYFSDFLRKEFSEEN---ILFWQACEYF 54
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2,
nucleus, oncogene, apoptosis, cell cycle, disease
mutation; 1.80A {Danio rerio}
Length = 130
Score = 25.6 bits (55), Expect = 4.3
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 17 MEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCE--- 73
++ V P + ++ ++ ++ + + YI+ K +
Sbjct: 9 VDDDDKIRTLPGEGTQVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQR 68
Query: 74 ----NCCDEPVPQL 83
+C D+P+ +L
Sbjct: 69 QHIVHCHDDPLGEL 82
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 25.2 bits (55), Expect = 7.1
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 27 RASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGY 65
R K P R + + + + V + + V +
Sbjct: 177 RMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNF 215
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 25.1 bits (55), Expect = 8.0
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 14/73 (19%)
Query: 21 KCTPAARASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEPV 80
TP +K ++ S+ + + + + + + I Y + D
Sbjct: 52 LNTPTLNVAKTLLGNRYSLD--LIDLFQSHDFKDSNTDVDMFIKYPVVYD---------- 99
Query: 81 PQLKFYEEVRTHS 93
H
Sbjct: 100 --ENLENLAFMHK 110
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 24.8 bits (54), Expect = 8.4
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 74 NCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVD 109
+CC EP + + +++ + F ++ D
Sbjct: 198 SCCPEPYIDVNLVVK-----FRERRAGNGFFRNLFD 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.404
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,883,596
Number of extensions: 98961
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 36
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)