RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17353
         (125 letters)



>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 157

 Score = 90.8 bits (225), Expect = 4e-25
 Identities = 36/61 (59%), Positives = 49/61 (80%)

Query: 29 SKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEE 88
          SKKI+LP+PS+RSVM KYLE + EV F+KIF+Q +GY+LF+DFC    +E  P ++FYEE
Sbjct: 1  SKKILLPEPSIRSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLKHLEEAKPLVEFYEE 60

Query: 89 V 89
          +
Sbjct: 61 I 61


>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 138

 Score = 28.0 bits (62), Expect = 0.21
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 54  NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSSFTAVFISIVDKTIF 113
           NF ++     G   F+ F     +     L F+E         +S        I    + 
Sbjct: 17  NFSELIRDPKGRQSFQHFLRK--EFSGENLGFWEACEDLKYGDQSKVKEKAEEIYKLFLA 74

Query: 114 P 114
           P
Sbjct: 75  P 75


>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
          RGS16 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 26.9 bits (59), Expect = 0.47
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 55 FDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEVRTHSIKKKSS 99
          FD + +   G   F  F +   +     L+F+         + ++
Sbjct: 2  FDLLLSSKNGVAAFHAFLKT--EFSEENLEFWLACEEFKKIRSAT 44


>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
          RGS18 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 132

 Score = 26.9 bits (59), Expect = 0.48
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 54 NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEV 89
          +FDK+ +   G   F  F +    E    ++F+   
Sbjct: 12 SFDKLLSHRDGLEAFTRFLKTEFSE--ENIEFWIAC 45


>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 147

 Score = 26.2 bits (57), Expect = 0.95
 Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 54 NFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEV 89
          +   + +   G  LF+ F +         L F+   
Sbjct: 15 SLHSLLDDQDGISLFRTFLKQEGCA--DLLDFWFAC 48


>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
           synthetase ATP-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 3   DLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYLEKKNEV 53
           D   V++D  YL++   +K   + ++ +K +    +   V+ KY+    + 
Sbjct: 178 DQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKK 228


>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 25.3 bits (55), Expect = 1.9
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 53 VNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYEEV 89
           + + + N   G   FK F ++   E    + F+   
Sbjct: 11 ESLENLINHECGLAAFKAFLKSEYSE--ENIDFWISC 45


>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
          (Mamestra brassicae) [TaxId: 55057]}
          Length = 101

 Score = 24.2 bits (53), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 3  DLEAVLADVSYLMA-----MEKSKCTPAARASKKIVLPD 36
          +L+ +LA+   L+A     ME+ KC+P  +  K+  L D
Sbjct: 10 NLDEILANKRLLVAYVNCVMERGKCSPEGKELKE-HLQD 47


>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 23.9 bits (50), Expect = 5.3
 Identities = 11/82 (13%), Positives = 21/82 (25%)

Query: 28  ASKKIVLPDPSVRSVMHKYLEKKNEVNFDKIFNQVIGYILFKDFCENCCDEPVPQLKFYE 87
           A+ +    D     + +  L++  E     +F       +          E  P+     
Sbjct: 32  ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTV 91

Query: 88  EVRTHSIKKKSSFTAVFISIVD 109
           +         S      I I D
Sbjct: 92  QATDLEGAGLSVEGKAIIQITD 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,605
Number of extensions: 20677
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 18
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.7 bits)