Query psy17355
Match_columns 849
No_of_seqs 164 out of 307
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 20:10:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4406|consensus 100.0 2.5E-31 5.5E-36 284.0 10.3 154 683-842 69-231 (467)
2 PF13716 CRAL_TRIO_2: Divergen 100.0 3.2E-31 7E-36 239.3 8.4 143 687-838 2-149 (149)
3 PF12496 BNIP2: Bcl2-/adenovir 99.8 2.6E-19 5.7E-24 167.8 3.7 98 601-698 17-127 (127)
4 smart00516 SEC14 Domain in hom 99.7 1.4E-17 3E-22 148.7 12.0 139 683-831 3-152 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.7 2.9E-16 6.2E-21 136.3 10.3 134 688-827 10-151 (157)
6 PF00650 CRAL_TRIO: CRAL/TRIO 99.0 3.6E-10 7.8E-15 101.4 3.9 131 689-826 9-152 (159)
7 KOG1470|consensus 98.8 9.5E-09 2.1E-13 109.4 9.0 128 690-825 101-234 (324)
8 KOG1471|consensus 98.2 5.9E-06 1.3E-10 84.1 8.6 88 739-826 158-249 (317)
9 PF02350 Epimerase_2: UDP-N-ac 40.0 1.2E+02 0.0025 33.1 8.1 72 738-817 178-250 (346)
10 KOG1826|consensus 39.7 24 0.00052 46.8 3.3 137 700-841 1572-1710(2724)
11 PF10928 DUF2810: Protein of u 37.2 16 0.00034 31.6 0.9 17 771-787 20-36 (54)
12 PF03641 Lysine_decarbox: Poss 31.6 96 0.0021 29.4 5.2 63 759-821 64-133 (133)
13 PRK11020 hypothetical protein; 28.9 29 0.00064 33.9 1.3 17 771-787 83-99 (118)
14 cd00842 MPP_ASMase acid sphing 21.9 4.3E+02 0.0094 27.4 8.2 94 690-784 157-257 (296)
No 1
>KOG4406|consensus
Probab=99.97 E-value=2.5e-31 Score=284.02 Aligned_cols=154 Identities=38% Similarity=0.618 Sum_probs=143.1
Q ss_pred hhhHHHHhc---------ccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCCCEEEEEEcCCCCC
Q psy17355 683 EPYKRVLSH---------GGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITEDYVLVYLHGATSR 753 (849)
Q Consensus 683 EPYKrVIyH---------GGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVeepYVIVYFHTGTSs 753 (849)
.+|+.++.| +|+|+.| |.||||.||+||..++.|+. +|+.|++.++|.+|+++|.+||||.|+..
T Consensus 69 d~fyd~~~H~~ei~qvi~~~~D~~g--r~iivv~a~rlp~~~eld~~----~li~~~v~~id~~Ve~DYt~vYfh~gl~s 142 (467)
T KOG4406|consen 69 DPFYDIARHEREILQVIGDAKDKQG--RKIIVVYACRLPSSSELDDI----RLISYLVYTIDKYVENDYTLVYFHHGLPS 142 (467)
T ss_pred ccHHHHHHhhhheeeeccCcccccC--CeeEEEEEecCCchhhhhhH----HHHHHHHHHHHHHHhccceeeehhcCCcc
Confidence 355666666 2356655 99999999999999987754 79999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCCHhHHhhcCCCCccCCChhHH
Q psy17355 754 HNMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVR 833 (849)
Q Consensus 754 dN~PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsSLSELsE~IP~EQL~IPdfV~ 833 (849)
+|+|+++|+.+.|..++|++|||||+||||||+||+|++|.+++||||.||.+||+|+++|+||.++|+.++|.||+.|+
T Consensus 143 ~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~ 222 (467)
T KOG4406|consen 143 DNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVL 222 (467)
T ss_pred cccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q psy17355 834 QYDKIKLSM 842 (849)
Q Consensus 834 EYDeELen~ 842 (849)
+||..++..
T Consensus 223 ~~D~~~~s~ 231 (467)
T KOG4406|consen 223 KHDDKLLSK 231 (467)
T ss_pred hhhhccccc
Confidence 999998875
No 2
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.97 E-value=3.2e-31 Score=239.28 Aligned_cols=143 Identities=38% Similarity=0.716 Sum_probs=112.4
Q ss_pred HHHhcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHc-ccccCCCEEEEEEcCCCCCCCCCCHHHHHHH
Q psy17355 687 RVLSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTL-DQLITEDYVLVYLHGATSRHNMPTFSWLKRC 765 (849)
Q Consensus 687 rVIyHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTL-E~LVeepYVIVYFHTGTSsdN~PSLSWLKK~ 765 (849)
++++.||.|++| ||||||.++++|.. . +++.+++|++++| +.++.++|+|||+++++++.+.|+++|++++
T Consensus 2 ~~~~~gG~d~~g--~pV~~~~~~~~~~~--~----~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~ 73 (149)
T PF13716_consen 2 IFFYPGGRDREG--RPVVVFIASRLPSS--D----DLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQL 73 (149)
T ss_dssp SE-EEEEEBTTS---EEEEEEGGG-C-T--T----HHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHT
T ss_pred eEEEecccCCCc--CEEEEEECCcCcch--h----hHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHH
Confidence 467899999987 99999999999432 2 5789999999999 8889999999999999999999999999999
Q ss_pred HHHHhHHhHhcccEEEEEeCChhHHHHH-Hhhcccccccc-cCcEEEcCCHhHHhhcCCCCcc--CCChhHHHHHHH
Q psy17355 766 YQMIDRKLKKNLKQLYLVHATFWLKTII-VMSKPFISSKF-SKKIQFIMSLNELAERLPIEEA--SIPDKVRQYDKI 838 (849)
Q Consensus 766 YQmLDRRyKKNLKALYIVHPTwfLKTLL-ALfRPFISsKF-~KKIvYVsSLSELsE~IP~EQL--~IPdfV~EYDeE 838 (849)
|++|++.+++||++||||||+||+|.++ .+++++++.|| ++||+|++++++|.++|+++|| .|| .|++||.|
T Consensus 74 ~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 74 YKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp TTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 9999999999999999999999999999 78899999999 9999999999999999999999 999 99999975
No 3
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=99.76 E-value=2.6e-19 Score=167.83 Aligned_cols=98 Identities=43% Similarity=0.721 Sum_probs=73.1
Q ss_pred CccCCCCCccccccCC----CCCCcccCCCCCC-----CChhhhHHhh-hc--CCC-CCCccccccchHHHhhcCCccce
Q psy17355 601 DLFSGNLMEDDLASLS----DEDLDELLTPSNA-----DDDLENSILE-QL--NLS-DDDLEIQELSAKEEREEGRRWKI 667 (849)
Q Consensus 601 d~~~d~~~~~~l~ss~----d~dLD~lltPS~~-----pDelE~~~~~-~L--gl~-~~~~~ipe~sA~EE~ed~rrWr~ 667 (849)
|.......++++.... |+++|+|+||++. +++|||+.+- .. +.. .....||+|+|+||.+++|+||.
T Consensus 17 d~~e~s~~sd~~~~~~~ddlDi~vDdleTp~dsd~ld~~~e~ewedd~p~~~~~~~~~~~~~i~~~ta~ee~~d~r~WR~ 96 (127)
T PF12496_consen 17 DQSEGSSLSDDFSDTPDDDLDINVDDLETPSDSDSLDSPHEFEWEDDLPRAGKGPGSSRESSIPEYTAEEEREDGRRWRT 96 (127)
T ss_pred CCCCCccccccccCCCCcccccccccccCCCccccccCCCCccccccccccccCcCCccccccccccccccccCCcceeE
Confidence 3333344444444333 6678999999874 4678875211 11 111 12237999999999999999999
Q ss_pred eeecCcccccCcccchhhHHHHhcccccccC
Q psy17355 668 CVVSGVEKRIDMKVIEPYKRVLSHGGYLAEG 698 (849)
Q Consensus 668 v~iggqek~iDMSVIEPYKrVIyHGGYD~dG 698 (849)
|++|+|+++|||++|||||+||+|||||++|
T Consensus 97 v~iG~qE~rIDMkvIEPYkrViSHGGYyGdG 127 (127)
T PF12496_consen 97 VRIGEQEHRIDMKVIEPYKRVISHGGYYGDG 127 (127)
T ss_pred EEECCccEEEeeEecccceeeeccCCccCCC
Confidence 9999999999999999999999999999986
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.74 E-value=1.4e-17 Score=148.68 Aligned_cols=139 Identities=22% Similarity=0.489 Sum_probs=117.4
Q ss_pred hhhHHHHhcc-cccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccC--------CCEEEEEEcCCCCC
Q psy17355 683 EPYKRVLSHG-GYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLIT--------EDYVLVYLHGATSR 753 (849)
Q Consensus 683 EPYKrVIyHG-GYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVe--------epYVIVYFHTGTSs 753 (849)
+.++.++.+| |+|..| |||+++.++.++.. . ++.+.+++|++..+|.+.. ..+++|+.-++.+.
T Consensus 3 ~~~~~~~~~~~g~D~~G--rpV~~~~~~~~~~~-~----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~ 75 (158)
T smart00516 3 ELGKAYIPGGRGYDKDG--RPVLIFRAGRFDLK-S----VTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSM 75 (158)
T ss_pred hhHHHhcCCCCCCCCCc--CEEEEEeccccccC-c----CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCc
Confidence 4555555543 467766 99999999988743 2 4688999999999986654 26788888888776
Q ss_pred CCCCCHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC--HhHHhhcCCCCccCCChh
Q psy17355 754 HNMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEASIPDK 831 (849)
Q Consensus 754 dN~PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS--LSELsE~IP~EQL~IPdf 831 (849)
.+ +.++|++++++.++..|..+|+.+|||||++|+++++.++++|+++|+.+||+++.+ .++|.++|+.++ ||.+
T Consensus 76 ~~-~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~--lP~~ 152 (158)
T smart00516 76 SN-PDLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQ--LPEE 152 (158)
T ss_pred cc-ccHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhh--CcHh
Confidence 65 889999999999999999999999999999999999999999999999999999998 999999998765 6654
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.67 E-value=2.9e-16 Score=136.28 Aligned_cols=134 Identities=25% Similarity=0.389 Sum_probs=112.0
Q ss_pred HHhcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccC------CCEEEEEEcCCCCCCCCC-CHH
Q psy17355 688 VLSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLIT------EDYVLVYLHGATSRHNMP-TFS 760 (849)
Q Consensus 688 VIyHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVe------epYVIVYFHTGTSsdN~P-SLS 760 (849)
+.+.||.|.+| |||+++..+........ +.+.+++|++..+|.+.. ..+++|+..+|.+..+.. .+.
T Consensus 10 ~~~~~~~D~~g--r~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~ 83 (157)
T cd00170 10 VGYLGGRDKEG--RPVLIIRAGNKDLSKSL----DSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPS 83 (157)
T ss_pred ccccCCCCCCc--CEEEEEecCCcchhhcC----CHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHH
Confidence 44566667776 99999988732222222 237888999988886664 367888888888877664 789
Q ss_pred HHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC-HhHHhhcCCCCccC
Q psy17355 761 WLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS-LNELAERLPIEEAS 827 (849)
Q Consensus 761 WLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS-LSELsE~IP~EQL~ 827 (849)
|+++++..++..|..+|+.+|||||+++++++++++++|+++|+.+||+++++ +++|.++|+.++|.
T Consensus 84 ~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp 151 (157)
T cd00170 84 LLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLP 151 (157)
T ss_pred HHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCc
Confidence 99999999999999999999999999999999999999999999999999999 99999999998754
No 6
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=98.97 E-value=3.6e-10 Score=101.35 Aligned_cols=131 Identities=20% Similarity=0.361 Sum_probs=94.3
Q ss_pred HhcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHccccc----C----CCEEEEEEcCCCCCCCCCC--
Q psy17355 689 LSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLI----T----EDYVLVYLHGATSRHNMPT-- 758 (849)
Q Consensus 689 IyHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LV----e----epYVIVYFHTGTSsdN~PS-- 758 (849)
.+..|+|.+| |||+++-.+.+.... +..+.++++++..+|.+. + ..+++|+..+|.+..+.+.
T Consensus 9 ~~~~g~D~~g--r~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 9 FYLHGRDKDG--RPVIYIRLGRFDPKK-----FSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp EEEEEE-TTS---EEEEEEGTT--HHT-----S-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred EEECCCCCCc--CEEEEEEcccCCCCc-----CCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 3556778876 999999666543331 224566666666666533 2 3678888888887655443
Q ss_pred HHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCCH---hHHhhcCCCCcc
Q psy17355 759 FSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMSL---NELAERLPIEEA 826 (849)
Q Consensus 759 LSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsSL---SELsE~IP~EQL 826 (849)
.+.++.+.+.+...|..+|+.+|||++.|++++++.+++||++.+..+||+++..- ++|.++|+.+.|
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 78889999999999999999999999999999999999999999999999999653 579999998654
No 7
>KOG1470|consensus
Probab=98.83 E-value=9.5e-09 Score=109.38 Aligned_cols=128 Identities=20% Similarity=0.316 Sum_probs=110.3
Q ss_pred hcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHccccc------CCCEEEEEEcCCCCCCCCCCHHHHH
Q psy17355 690 SHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLI------TEDYVLVYLHGATSRHNMPTFSWLK 763 (849)
Q Consensus 690 yHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LV------eepYVIVYFHTGTSsdN~PSLSWLK 763 (849)
|..|+|..| |||+|+.++.=..+ . -.++.+.++++.+||..+ ++.+++++.-+|++..| |+++.++
T Consensus 101 yi~G~D~~g--RPVl~~~~~~~~qn-~----~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~~~k 172 (324)
T KOG1470|consen 101 YILGHDKDG--RPVLYLRPRPHRQN-T----KTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIKFLK 172 (324)
T ss_pred EEecccCCC--CeEEEEecCCCCCC-C----CCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcHHHH
Confidence 455688887 99999977743322 2 247788888888887543 34689999889988775 7899999
Q ss_pred HHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCCHhHHhhcCCCCc
Q psy17355 764 RCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMSLNELAERLPIEE 825 (849)
Q Consensus 764 K~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsSLSELsE~IP~EQ 825 (849)
-+...|..-|..+|-..+|+||-|++..+|.+.+|||.++...||+|+..-.+|.++|++++
T Consensus 173 ~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~ 234 (324)
T KOG1470|consen 173 ELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQ 234 (324)
T ss_pred HHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999988
No 8
>KOG1471|consensus
Probab=98.16 E-value=5.9e-06 Score=84.13 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=78.0
Q ss_pred CCCEEEEEEcCCCCCCCC--CCHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEE--EcCCH
Q psy17355 739 TEDYVLVYLHGATSRHNM--PTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQ--FIMSL 814 (849)
Q Consensus 739 eepYVIVYFHTGTSsdN~--PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIv--YVsSL 814 (849)
...++.|+.-.|.+..+. +.+..++++...+...|..+|+++|||+..+++.++|.+++||++.|..+||+ ...+.
T Consensus 158 ~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~ 237 (317)
T KOG1471|consen 158 ISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDK 237 (317)
T ss_pred cceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCch
Confidence 345688888888875554 77899999999999999999999999999999999999999999999999999 44589
Q ss_pred hHHhhcCCCCcc
Q psy17355 815 NELAERLPIEEA 826 (849)
Q Consensus 815 SELsE~IP~EQL 826 (849)
+.|.++|+.+.|
T Consensus 238 ~~L~k~i~~~~L 249 (317)
T KOG1471|consen 238 ESLLKYIPPEVL 249 (317)
T ss_pred hhhhhhCCHhhC
Confidence 999999999754
No 9
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=40.04 E-value=1.2e+02 Score=33.11 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=37.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhHhcccEEEEEeCChh-HHHHHHhhcccccccccCcEEEcCCHhH
Q psy17355 738 ITEDYVLVYLHGATSRHNMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFW-LKTIIVMSKPFISSKFSKKIQFIMSLNE 816 (849)
Q Consensus 738 VeepYVIVYFHTGTSsdN~PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwf-LKTLLALfRPFISsKF~KKIvYVsSLSE 816 (849)
..++|++|.+|..+...+.-.+.-+..+...|... +++.-|+.+|++-- .+.+...+.-| +.|+++.+|..
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~--~~~~vi~~~hn~p~~~~~i~~~l~~~------~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER--QNVPVIFPLHNNPRGSDIIIEKLKKY------DNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH--TTEEEEEE--S-HHHHHHHHHHHTT-------TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc--CCCcEEEEecCCchHHHHHHHHhccc------CCEEEECCCCH
Confidence 67899999999887554322344444454544444 68999999996544 33333344433 38888887754
Q ss_pred H
Q psy17355 817 L 817 (849)
Q Consensus 817 L 817 (849)
+
T Consensus 250 ~ 250 (346)
T PF02350_consen 250 E 250 (346)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>KOG1826|consensus
Probab=39.69 E-value=24 Score=46.79 Aligned_cols=137 Identities=12% Similarity=-0.102 Sum_probs=93.5
Q ss_pred cceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCCCEEEEEEcCCCCCCCCCCHHHHHH-HHHHHhHHhHhccc
Q psy17355 700 HNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITEDYVLVYLHGATSRHNMPTFSWLKR-CYQMIDRKLKKNLK 778 (849)
Q Consensus 700 GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVeepYVIVYFHTGTSsdN~PSLSWLKK-~YQmLDRRyKKNLK 778 (849)
|.+++++++++.--...-| +.|+..+..++.+.+.-+|.++-.-+-..-++.---++++. ++...+.-...|..
T Consensus 1572 ~~k~~~lvs~r~fl~~~s~-----~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~~~~f~vr~~va~e~~~ 1646 (2724)
T KOG1826|consen 1572 GLKNFYLVSRRKFLKECSD-----DILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLYLKWFKVRPHVANENKH 1646 (2724)
T ss_pred cCcchhhHhHHHHHhhcCc-----HHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHhhhheeechhhhhhccc
Confidence 4889888877632221112 24555667788999999999888755443222211223333 44556666678889
Q ss_pred EEEEEeCChhHHHHHHhhccc-ccccccCcEEEcCCHhHHhhcCCCCccCCChhHHHHHHHhhc
Q psy17355 779 QLYLVHATFWLKTIIVMSKPF-ISSKFSKKIQFIMSLNELAERLPIEEASIPDKVRQYDKIKLS 841 (849)
Q Consensus 779 ALYIVHPTwfLKTLLALfRPF-ISsKF~KKIvYVsSLSELsE~IP~EQL~IPdfV~EYDeELen 841 (849)
++|++..+.|+|....+.--+ ---|=-++..|.+.--.|.++|.-++-..|-..+--++.++-
T Consensus 1647 a~~di~~n~~lK~~~~l~driL~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkv 1710 (2724)
T KOG1826|consen 1647 AVGDINCNSFLKETTKLHDRILGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKV 1710 (2724)
T ss_pred ccccccchHHHHHHHHHHHHHHhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccc
Confidence 999999999999876632222 122556888999999999999999998899888887776654
No 11
>PF10928 DUF2810: Protein of unknown function (DUF2810); InterPro: IPR021230 This is a bacterial family of uncharacterised proteins. This entry contains YibL (P0ADK8 from SWISSPROT), which comigrates with the mature 50S ribosome subunit. It either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2LF0_A.
Probab=37.20 E-value=16 Score=31.56 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=13.0
Q ss_pred HHhHhcccEEEEEeCCh
Q psy17355 771 RKLKKNLKQLYLVHATF 787 (849)
Q Consensus 771 RRyKKNLKALYIVHPTw 787 (849)
-++||.+++++||||-.
T Consensus 20 GkLKKsVrGLvvVHPmT 36 (54)
T PF10928_consen 20 GKLKKSVRGLVVVHPMT 36 (54)
T ss_dssp HHHHHHTTS-EEE-SSS
T ss_pred HHHHhhhceeEEEechH
Confidence 47899999999999954
No 12
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=31.65 E-value=96 Score=29.43 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHh-HHhHhccc-EEEEEeCC-hhHHHHHH----hhcccccccccCcEEEcCCHhHHhhcC
Q psy17355 759 FSWLKRCYQMID-RKLKKNLK-QLYLVHAT-FWLKTIIV----MSKPFISSKFSKKIQFIMSLNELAERL 821 (849)
Q Consensus 759 LSWLKK~YQmLD-RRyKKNLK-ALYIVHPT-wfLKTLLA----LfRPFISsKF~KKIvYVsSLSELsE~I 821 (849)
++-|-.++..+- .++...-| -++++... +|-..+-+ +-.-|++.+-...+.++++.+++.++|
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 788899998887 55555666 89999975 66444433 346688888899999999999998764
No 13
>PRK11020 hypothetical protein; Provisional
Probab=28.88 E-value=29 Score=33.94 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.8
Q ss_pred HHhHhcccEEEEEeCCh
Q psy17355 771 RKLKKNLKQLYLVHATF 787 (849)
Q Consensus 771 RRyKKNLKALYIVHPTw 787 (849)
-++||.+++++||||-.
T Consensus 83 GkLKKSVrGLVVVHPMT 99 (118)
T PRK11020 83 GKLKKSVRGLVVVHPMT 99 (118)
T ss_pred HHHhhcccceeEecCch
Confidence 47899999999999943
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=21.88 E-value=4.3e+02 Score=27.40 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=52.2
Q ss_pred hccccccc--CCcceEEEEEeeecCCCCCCch---hhcHHHHHHHHHHHcccccC-CCEEEEEEcCCCCCCCCCC-HHHH
Q psy17355 690 SHGGYLAE--GCHNAIIVFSACFLPHHSRADY---HYVMDNLFFYVLHTLDQLIT-EDYVLVYLHGATSRHNMPT-FSWL 762 (849)
Q Consensus 690 yHGGYD~d--G~GRPVVVFIAcyLPasSe~DY---~ydMErLLLYVIkTLE~LVe-epYVIVYFHTGTSsdN~PS-LSWL 762 (849)
..|||+.. ..+-.||++...+........+ ..+...-+.++..+|+..-. ...++|..|--......+. ..|-
T Consensus 157 ~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~ 236 (296)
T cd00842 157 KKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWS 236 (296)
T ss_pred hcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHH
Confidence 46777631 2256788877665433211100 12346678999999988765 4677888885332222111 2454
Q ss_pred HHHHHHHhHHhHhcccEEEEEe
Q psy17355 763 KRCYQMIDRKLKKNLKQLYLVH 784 (849)
Q Consensus 763 KK~YQmLDRRyKKNLKALYIVH 784 (849)
.++.+ |=.+|+..+++++.=|
T Consensus 237 ~~~~~-ii~~y~~~i~~~~~GH 257 (296)
T cd00842 237 ERYLQ-IINRYSDTIAGQFFGH 257 (296)
T ss_pred HHHHH-HHHHHHHhhheeeecc
Confidence 44444 4445776677666544
Done!