Query psy17355
Match_columns 849
No_of_seqs 164 out of 307
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 20:11:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 3E-35 1E-39 293.6 9.0 157 676-840 1-158 (256)
2 3peg_A Neurofibromin; SEC14 do 99.9 5.6E-27 1.9E-31 239.0 8.6 150 677-834 21-171 (290)
3 1r5l_A Alpha-TTP, protein (alp 99.4 7.7E-13 2.6E-17 127.1 9.4 128 692-827 89-226 (262)
4 3hx3_A Retinaldehyde-binding p 99.3 1.8E-12 6.2E-17 131.2 7.8 130 691-827 147-285 (316)
5 1aua_A Phosphatidylinositol tr 99.3 4.3E-12 1.5E-16 125.4 6.3 133 691-826 108-257 (296)
6 1olm_A SEC14-like protein 2; l 99.2 1.9E-11 6.4E-16 126.2 7.9 131 693-826 90-237 (403)
7 3q8g_A CRAL-TRIO domain-contai 99.0 9.9E-11 3.4E-15 119.4 5.1 133 691-826 123-272 (320)
8 2lf0_A Uncharacterized protein 26.0 17 0.00059 34.4 0.6 17 771-787 88-104 (123)
9 3sbx_A Putative uncharacterize 14.1 1.9E+02 0.0065 28.3 4.9 64 759-822 119-188 (189)
10 1ydh_A AT5G11950; structural g 11.0 3.4E+02 0.011 26.9 5.7 64 759-822 116-185 (216)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=3e-35 Score=293.57 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=147.0
Q ss_pred ccCcccchhhHHHHhcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCCCEEEEEEcCCCCCCC
Q psy17355 676 RIDMKVIEPYKRVLSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITEDYVLVYLHGATSRHN 755 (849)
Q Consensus 676 ~iDMSVIEPYKrVIyHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVeepYVIVYFHTGTSsdN 755 (849)
++|+++|+.. +++|+||++++| ||||||++|+||.. . .|||.|++|++++|+.++.++|+|||+||+++..+
T Consensus 1 ~ed~~~i~~~-~ify~~G~d~dG--rpViv~~~~~l~~~-~----~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 1 KEEFKALKTL-SIFYQAGTSKAG--NPIFYYVARRFKTG-Q----INGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSN 72 (256)
T ss_dssp CTTTTTHHHH-TSEEEEEECTTS--CEEEEEEGGGCCBT-T----BCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGG
T ss_pred CcchhHHHHc-CCEEEcCcCCCC--CEEEEEEeecCCCC-C----CCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccc
Confidence 3699999996 899999999987 99999999999974 3 56999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHH-hhcccccccccCcEEEcCCHhHHhhcCCCCccCCChhHHH
Q psy17355 756 MPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIV-MSKPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVRQ 834 (849)
Q Consensus 756 ~PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLA-LfRPFISsKF~KKIvYVsSLSELsE~IP~EQL~IPdfV~E 834 (849)
.|+++||++||+++|++++||||++|||||++|+|.+++ +.++|.+.||++|++||++|+||.++|++++|.||+++.+
T Consensus 73 ~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~ 152 (256)
T 3pg7_A 73 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLA 152 (256)
T ss_dssp CCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHH
T ss_pred CCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHcCCChHHHh
Confidence 999999999999999999999999999999999997665 5788888999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy17355 835 YDKIKL 840 (849)
Q Consensus 835 YDeELe 840 (849)
+|+++.
T Consensus 153 ~~~d~r 158 (256)
T 3pg7_A 153 LEEDLK 158 (256)
T ss_dssp TTSSCE
T ss_pred hcccce
Confidence 998764
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.93 E-value=5.6e-27 Score=239.03 Aligned_cols=150 Identities=20% Similarity=0.285 Sum_probs=121.2
Q ss_pred cCcccchhhHHHHhcccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCCCEEEEEEcCCCCCCCC
Q psy17355 677 IDMKVIEPYKRVLSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITEDYVLVYLHGATSRHNM 756 (849)
Q Consensus 677 iDMSVIEPYKrVIyHGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVeepYVIVYFHTGTSsdN~ 756 (849)
.|++.|+.. +++++||.+.+| ||||||++|++|.. . .|+|.|++|++++++.++.++|+|||+||+++..+.
T Consensus 21 e~~~~i~~~-~~f~~~g~d~dG--~PViv~~~~~~~~~-~----~D~e~Lly~il~tl~~~~~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 21 EEFKALKTL-SIFYQAGTSKAG--NPIFYYVARRFKTG-Q----INGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp ---CCGGGT-TTEEEEEECTTS--CEEEEEEGGGCCBT-T----BCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGC
T ss_pred hhhhhhhcC-CeEEEeccCCCC--CEEEEEEeecCCcc-C----CCHHHHHHHHHHHHHHhcCCCeEEEEEcCCCCccCC
Confidence 467888775 788999999987 99999999999964 3 568999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHH-HhhcccccccccCcEEEcCCHhHHhhcCCCCccCCChhHHH
Q psy17355 757 PTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTII-VMSKPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVRQ 834 (849)
Q Consensus 757 PSLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLL-ALfRPFISsKF~KKIvYVsSLSELsE~IP~EQL~IPdfV~E 834 (849)
|+..||+++|+++|++++|||+++|||||++|+|.++ .++++|.+.|+++|++|++++.+|..+|+.+++.+|+....
T Consensus 93 p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~~~lp~~~~~ 171 (290)
T 3peg_A 93 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLA 171 (290)
T ss_dssp CCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC------------------
T ss_pred ChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHHhcCccccch
Confidence 9999999999999999999999999999999988866 58899999999999999999999999999999999874433
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.38 E-value=7.7e-13 Score=127.13 Aligned_cols=128 Identities=13% Similarity=0.236 Sum_probs=107.3
Q ss_pred ccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCC------CEEEEEEcCCCCCCCC--CCHHHHH
Q psy17355 692 GGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITE------DYVLVYLHGATSRHNM--PTFSWLK 763 (849)
Q Consensus 692 GGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVee------pYVIVYFHTGTSsdN~--PSLSWLK 763 (849)
.|+|..| |||+++-...+.... +..+.++++++..+|.++.. .+++|+...|.+..+. +.+++++
T Consensus 89 ~g~D~~G--rpV~i~~~~~~d~~~-----~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k 161 (262)
T 1r5l_A 89 RSRDPTG--SKVLIYRIAHWDPKV-----FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAK 161 (262)
T ss_dssp SSCCTTC--CEEEEEEGGGCCTTT-----SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHH
T ss_pred CCcCCCC--CEEEEEeccccCccc-----CCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHH
Confidence 4667776 999999766554332 24567888888888766653 4899999999876654 5689999
Q ss_pred HHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC--HhHHhhcCCCCccC
Q psy17355 764 RCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEAS 827 (849)
Q Consensus 764 K~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS--LSELsE~IP~EQL~ 827 (849)
++...+...|..+|+++||||+.|+++++|.+++||++.|..+||+++.+ .++|.++|+ ++|.
T Consensus 162 ~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP 226 (262)
T 1r5l_A 162 KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILP 226 (262)
T ss_dssp HHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSC
T ss_pred HHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCc
Confidence 99999999999999999999999999999999999999999999999975 799999998 7653
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.32 E-value=1.8e-12 Score=131.24 Aligned_cols=130 Identities=13% Similarity=0.228 Sum_probs=109.0
Q ss_pred cccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHcccccCC------CEEEEEEcCCCCCCCC--CCHHHH
Q psy17355 691 HGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLITE------DYVLVYLHGATSRHNM--PTFSWL 762 (849)
Q Consensus 691 HGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LVee------pYVIVYFHTGTSsdN~--PSLSWL 762 (849)
.+|+|+.| |||+++-...+... . +..+.+++|++..+|.++.. .+++|+...|++..+. .+.+++
T Consensus 147 l~g~Dk~G--rpVii~r~g~~d~~-~----~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~ 219 (316)
T 3hx3_A 147 LSSRDKYG--RVVMLFNIENWQSQ-E----ITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDL 219 (316)
T ss_dssp CSSCCTTS--CEEEEEECTTCCTT-T----SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHH
T ss_pred cCCCCCCC--CEEEEEecccCCCC-C----CCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHH
Confidence 45677766 99999965544322 1 35788999999999877753 6899999999876543 467899
Q ss_pred HHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcC-CHhHHhhcCCCCccC
Q psy17355 763 KRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIM-SLNELAERLPIEEAS 827 (849)
Q Consensus 763 KK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVs-SLSELsE~IP~EQL~ 827 (849)
+++...+...|..+|+++||||+.|+++++|.+++||++.|+.+||+++. ++++|.++|+.++|.
T Consensus 220 k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP 285 (316)
T 3hx3_A 220 RKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILP 285 (316)
T ss_dssp HHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSB
T ss_pred HHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCc
Confidence 99999999999999999999999999999999999999999999999995 699999999987653
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.25 E-value=4.3e-12 Score=125.42 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=105.7
Q ss_pred cccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHccccc--------------CCCEEEEEEcCCCCCCCC
Q psy17355 691 HGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLI--------------TEDYVLVYLHGATSRHNM 756 (849)
Q Consensus 691 HGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LV--------------eepYVIVYFHTGTSsdN~ 756 (849)
..|+|+.| |||+++-...+....... ...++++++|++..+|.++ .+.+++|+...|.+..+.
T Consensus 108 ~~g~Dk~G--rpV~i~~~g~~d~~~~~~-~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~ 184 (296)
T 1aua_A 108 YHKTDKDG--RPVYFEELGAVNLHEMNK-VTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSA 184 (296)
T ss_dssp EEEECTTS--CEEEEECGGGCCHHHHTT-TCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHH
T ss_pred ecccCCCC--CEEEEEeeccCChHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHH
Confidence 34788876 999998655443211000 1246788888887776432 245889999999876665
Q ss_pred CC-HHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC--HhHHhhcCCCCcc
Q psy17355 757 PT-FSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEA 826 (849)
Q Consensus 757 PS-LSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS--LSELsE~IP~EQL 826 (849)
+. .++++++...+...|..+|+++||||+.|+++++|.+++||++.|..+||+++.+ .++|.++|+.++|
T Consensus 185 ~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 185 YSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred HHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence 44 5789999999999999999999999999999999999999999999999999986 7889999998765
No 6
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.20 E-value=1.9e-11 Score=126.18 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=106.6
Q ss_pred cccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHccccc-------------CCCEEEEEEcCCCCCCCC--C
Q psy17355 693 GYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLI-------------TEDYVLVYLHGATSRHNM--P 757 (849)
Q Consensus 693 GYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LV-------------eepYVIVYFHTGTSsdN~--P 757 (849)
|+|+.| |||+++....+.... .-..+..+.+++|++..||.++ ...+++|+...|.+..+. |
T Consensus 90 g~Dk~G--rpV~~~~~g~~d~~~-l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~ 166 (403)
T 1olm_A 90 GYDLDG--CPVWYDIIGPLDAKG-LLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKP 166 (403)
T ss_dssp EECTTS--CEEEEEECTTCCHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHH
T ss_pred ccCCCc--CEEEEEecCCCChHH-hhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhH
Confidence 677776 999999766543210 0001346788888888887543 246899999999876654 5
Q ss_pred CHHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC--HhHHhhcCCCCcc
Q psy17355 758 TFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEA 826 (849)
Q Consensus 758 SLSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS--LSELsE~IP~EQL 826 (849)
.+.+++++...+...|..+|+++||||+.|+++++|.+++||++.+..+||+++.+ .++|.++|+.++|
T Consensus 167 ~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 167 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred HHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 68899999999999999999999999999999999999999999999999999975 6789999998765
No 7
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.04 E-value=9.9e-11 Score=119.39 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=103.4
Q ss_pred cccccccCCcceEEEEEeeecCCCCCCchhhcHHHHHHHHHHHccccc--------------CCCEEEEEEcCCCCCCCC
Q psy17355 691 HGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQLI--------------TEDYVLVYLHGATSRHNM 756 (849)
Q Consensus 691 HGGYD~dG~GRPVVVFIAcyLPasSe~DY~ydMErLLLYVIkTLE~LV--------------eepYVIVYFHTGTSsdN~ 756 (849)
..|+|+.| |||+++-...+....... ....+++++|++..+|.++ .+..++|+.-.|.+..+.
T Consensus 123 ~~g~Dk~G--RpV~i~r~g~~d~~~l~~-~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~ 199 (320)
T 3q8g_A 123 YHHVDKDG--RPLYFAELGGINLKKMYK-ITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNA 199 (320)
T ss_dssp EEEECTTC--CEEEEEECTTCCHHHHHH-HCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHH
T ss_pred ecCCCCCc--CEEEEEeccccCHHHhhc-cCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHH
Confidence 34778876 999999765543210000 0135667777776665432 245688888888876655
Q ss_pred CC-HHHHHHHHHHHhHHhHhcccEEEEEeCChhHHHHHHhhcccccccccCcEEEcCC--HhHHhhcCCCCcc
Q psy17355 757 PT-FSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEA 826 (849)
Q Consensus 757 PS-LSWLKK~YQmLDRRyKKNLKALYIVHPTwfLKTLLALfRPFISsKF~KKIvYVsS--LSELsE~IP~EQL 826 (849)
+. +++++++...+...|..+|+.+|||++.|+++++|.+++||++.|..+||+++.+ .++|.++|+.++|
T Consensus 200 ~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 272 (320)
T 3q8g_A 200 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENL 272 (320)
T ss_dssp HHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGS
T ss_pred HHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhC
Confidence 43 6789999999999999999999999999999999999999999999999999986 7899999998765
No 8
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.97 E-value=17 Score=34.35 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.5
Q ss_pred HHhHhcccEEEEEeCCh
Q psy17355 771 RKLKKNLKQLYLVHATF 787 (849)
Q Consensus 771 RRyKKNLKALYIVHPTw 787 (849)
-++||.+++|+||||-.
T Consensus 88 GkLKKSVrGLVVVHPMT 104 (123)
T 2lf0_A 88 GKLKKSVRGLVVVHPMT 104 (123)
T ss_dssp HHHHHHTTSCEEECSSS
T ss_pred HHHhhcccceeEecCch
Confidence 46899999999999953
No 9
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=14.12 E-value=1.9e+02 Score=28.28 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHh-HHhHhcccEEEEEeC-ChhHHHHHH----hhcccccccccCcEEEcCCHhHHhhcCC
Q psy17355 759 FSWLKRCYQMID-RKLKKNLKQLYLVHA-TFWLKTIIV----MSKPFISSKFSKKIQFIMSLNELAERLP 822 (849)
Q Consensus 759 LSWLKK~YQmLD-RRyKKNLKALYIVHP-TwfLKTLLA----LfRPFISsKF~KKIvYVsSLSELsE~IP 822 (849)
++-|-.+++.+- ..+.+.=|-++++.. .+|-..+-+ +-..||+.+-...|.++++.+|+.++|.
T Consensus 119 ~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l~ 188 (189)
T 3sbx_A 119 VGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHhc
Confidence 888889888874 334445578999998 577554322 3345888888899999999999998765
No 10
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=10.97 E-value=3.4e+02 Score=26.91 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHh-HHhHhcccEEEEEeCC-hhHHHHHH----hhcccccccccCcEEEcCCHhHHhhcCC
Q psy17355 759 FSWLKRCYQMID-RKLKKNLKQLYLVHAT-FWLKTIIV----MSKPFISSKFSKKIQFIMSLNELAERLP 822 (849)
Q Consensus 759 LSWLKK~YQmLD-RRyKKNLKALYIVHPT-wfLKTLLA----LfRPFISsKF~KKIvYVsSLSELsE~IP 822 (849)
++-|-.+++.|- ..+.+.=|-|+++... +|-..+-+ +-..||+......|.++++.+++.+.|.
T Consensus 116 ~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~ 185 (216)
T 1ydh_A 116 YGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185 (216)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHH
Confidence 788888888774 3344556889999975 77554433 3356788888899999999999998874
Done!