RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17355
(849 letters)
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 137 bits (347), Expect = 3e-36
Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 9/176 (5%)
Query: 675 KRIDMKVIEPYKRVLSHGGYLAEGC---HNAIIVFSACFLPHHSRADYHYVMDNLFFYVL 731
R + E +K + + + G N I + A D L ++VL
Sbjct: 13 TRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQ-----INGDLLIYHVL 67
Query: 732 HTLDQLITEDYVLVYLHGATSRHNMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKT 791
TL + Y +V T N +L + + + N+ +Y+ + W++
Sbjct: 68 LTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVRE 127
Query: 792 II-VMSKPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVRQYDKIKLSMNASS 846
+ K SK++ FI +LAE + E+ +P + + A++
Sbjct: 128 YTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALGHEQQKLPAAT 183
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 135 bits (340), Expect = 1e-35
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%)
Query: 678 DMKVIEPYKRVLSHGGYLAEGCHNAIIVFSACFLPHHSRADYHYVMDNLFFYVLHTLDQL 737
+ K ++ + G G N I + A D L ++VL TL
Sbjct: 3 EFKALKT-LSIFYQAGTSKAG--NPIFYYVARRFKTGQ-----INGDLLIYHVLLTLKPY 54
Query: 738 ITEDYVLVYLHGATSRHNMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTII-VMS 796
+ Y +V T N +L + + + N+ +Y+ + W++
Sbjct: 55 YAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHE 114
Query: 797 KPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVRQYDK 837
+ K SK++ FI +LAE + E+ +P ++
Sbjct: 115 RLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEE 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 1e-09
Identities = 85/498 (17%), Positives = 146/498 (29%), Gaps = 158/498 (31%)
Query: 119 LVNNYHNLTPELDSPDSDDLFDSHKVPSR---RFNSHARSIENNNANCNTPENDVETVTE 175
L ++ +L L P + S + S+ +FN A + P E V +
Sbjct: 9 LTLSHGSLEHVLLVPTA-----SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 176 -LSNNNSDSTNISANVIETNTPVHMTEPSELNLN---------NNPTNHSVTQN-DLNRE 224
L ++++E + + L L N+ H++ +
Sbjct: 64 FLG--------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQEND 113
Query: 225 KKDRQEKDL----------------STKVSDLLEKVSSLNANL--------NPKVVF--- 257
+ K+L S L V NA L N F
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 258 ----HTPQT--TPL--QTTPLKLKLNSLPVQSHPLEQHALD----------RTDQEY-CN 298
T L + +L + + + L+ D++Y +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 299 EPLDFPNSPVLNKSIDDICL---KRYKRSCQGATSGPNP-----------LCVQG----- 339
P+ P L I + Y + + G P QG
Sbjct: 234 IPISCP----L------IGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 340 ----SETPNGSQETEMNCI--------RSNASASPIRTLSPST---TIRTNPSASTSFES 384
+++ + I R A P +L PS ++ N + S
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 385 VT-LARSSLNAS-DFTNNISAESYLKKYDDINAQVRAYL-NKTQS-------QDLHKTLQ 434
++ L + + + TN S+L QV L N ++ Q L+ L
Sbjct: 341 ISNLTQEQVQDYVNKTN-----SHLPA----GKQVEISLVNGAKNLVVSGPPQSLY-GLN 390
Query: 435 SAAEANGATS-VRQSELEALNER----SHRYL-------S---TNAEDDISSALGASKVM 479
A S + QS + +ER S+R+L S A D I+ L + V
Sbjct: 391 LTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 480 YVSDDEDVSVYDTIVSQD 497
+ + D + VYDT D
Sbjct: 450 FNAKDIQIPVYDTFDGSD 467
Score = 60.1 bits (145), Expect = 3e-09
Identities = 86/503 (17%), Positives = 149/503 (29%), Gaps = 164/503 (32%)
Query: 373 RTNPSASTSFESVTLARSSLNASDFTNNISAESYLKKYDDINAQVRAYLNKTQSQDLHKT 432
PS F+ V L +F N YL+ +DI+A A L + L KT
Sbjct: 71 LVEPSKVGQFDQV--LNLCLT--EFENC-----YLEG-NDIHALA-AKLLQENDTTLVKT 119
Query: 433 ---LQSAAEANGA-----TSVRQSEL-EALNERSHRYLST-----NAEDDISSALGASKV 478
+++ A S L A+ E + + ++ N +D
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD----------- 168
Query: 479 MYVSDDEDVSVYDT---IVSQDCHGVKLVKNARKSVPPPGDNHSGAQRNHQNRKKLLLST 535
Y +E +Y T +V L+K + +++ A++
Sbjct: 169 -YF--EELRDLYQTYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQ------GL 213
Query: 536 DLFSGNLMEDDCIDDEDVSVYDTI------VSQDCHGVKLVKNARKSVAT-SDSHSGAQG 588
++ L D+D + I V Q H V K + GA G
Sbjct: 214 NILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 589 NHQSRKKLLLSTDLFSGNLMEDDLASLSDEDLDEL---------------LTPSNADDDL 633
+ Q L++ + + + + L L PS +D L
Sbjct: 273 HSQG----LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 634 ENS------ILEQLNLSDDDLE--IQELSAKEEREE--------GRRWKICVVSG----- 672
EN+ +L NL+ + ++ + + ++ + G + VVSG
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLVVSGPPQSL 386
Query: 673 ------VEK----------RIDMKVIEPY-KRVLSHGGYLAEGCHNAIIVFSACFL---- 711
+ K RI P+ +R L FS FL
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRI------PFSERKL---------------KFSNRFLPVAS 425
Query: 712 PHHSRADYHYVMDNLFFYVLHTLDQLITEDYVLVYLHGATSRHNMP---TFSWLKRCYQM 768
P HS H L LI +D V + +P TF ++
Sbjct: 426 PFHS----HL---------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDLRV 470
Query: 769 IDRKLKKNLKQLYLVHATFWLKT 791
+ + + + + W T
Sbjct: 471 LSGSISERIVDCIIRLPVKWETT 493
Score = 45.0 bits (106), Expect = 1e-04
Identities = 46/248 (18%), Positives = 72/248 (29%), Gaps = 94/248 (37%)
Query: 75 SFEP-IIEGSQE------------RKATKEKLMNSSFEQIIEKNSTALNRDTQNNIGLVN 121
S P I+E S E T+E++ + + K ++ L Q I LVN
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQV-----QDYVNKTNSHLPAGKQVEISLVN 372
Query: 122 NYHNL----TPELDSPDSDDLFDSHKVPSRRFNSHARSIENNNAN--CNTP--ENDVETV 173
NL P+ L N R + + P E ++
Sbjct: 373 GAKNLVVSGPPQ-------SL--------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 174 TE-LSNNNSDSTNISANVIETNTPVHMTEPSELNLNNNPTNHSVTQNDLNREKKDRQEKD 232
L +++ P H S L L P + + + DL + KD
Sbjct: 418 NRFL--------PVAS-------PFH----SHL-L--VPASDLINK-DLVKNNVSFNAKD 454
Query: 233 LSTKV------SDLLEKVSSLNANLNPKVVFHTP----QTTPLQTTPLKLKLNSLPVQSH 282
+ V SDL S++ + + P TT + T
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVD-CIIRLPVKWETTTQFKAT-------------- 499
Query: 283 PLEQHALD 290
H LD
Sbjct: 500 ----HILD 503
Score = 44.3 bits (104), Expect = 2e-04
Identities = 33/196 (16%), Positives = 55/196 (28%), Gaps = 63/196 (32%)
Query: 345 GSQETEM-----------NCIRSNASASPIRTL--SPSTTIRTNPSASTSFESVTLA--- 388
GSQE M + + A T S + NP T
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 389 RSSLNASDFTNNISAESYLKK-YDDINAQVRAYLNKTQSQDLHKTLQSAAEANGATSVRQ 447
R + +A F + + +K + +IN +Y +++ L T Q A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEK-- 1741
Query: 448 SELEALNERS----------HRYLSTNAEDDIS----SALGA-SKVMYVSDDEDVSVYDT 492
+ E L + H S +AL + + VM +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGH-----------SLGEYAALASLADVMSIES--------- 1781
Query: 493 IVSQDCHGVKLVKNAR 508
V++V R
Sbjct: 1782 -------LVEVVF-YR 1789
Score = 39.6 bits (92), Expect = 0.005
Identities = 63/322 (19%), Positives = 93/322 (28%), Gaps = 105/322 (32%)
Query: 97 SFEQIIEKNSTALNRDTQNNIGLVNNYHNLTPELDSPDS---DDLFDSHKVPSRRFNSHA 153
SF + K T L IG+ + P P S D L ++ VPS
Sbjct: 291 SFFVSVRKAITVLFF-----IGVRC--YEAYPNTSLPPSILEDSLENNEGVPS-----PM 338
Query: 154 RSIENNNANCNTPENDVETVTELSNNNSDSTNISANVIETNTPVHMTEPSELNLNNNPTN 213
SI N + V+ V +TN+ + + E++L N N
Sbjct: 339 LSISN------LTQEQVQDY----------------VNKTNSHLPAGKQVEISLVNGAKN 376
Query: 214 HSVT--QNDLNREKKDRQEKDLSTKVSDLLEKVSSLNANLNPKVVFHTPQT-TPLQTTPL 270
V+ L L+ L K K Q+ P L
Sbjct: 377 LVVSGPPQSLYG---------LNLT----LRKA---------KAPSGLDQSRIPFSERKL 414
Query: 271 KLKLNSLPVQS--H-PLEQHALDRTDQEYCNEPLDFPNS----PV-----------LNKS 312
K LPV S H L A D +++ + F PV L+ S
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 313 I-----DDICLKR--YKRSCQGATS-----GPNPLCVQGSETPNGSQETEMNCIRSNASA 360
I D I ++ + Q + GP G + G N
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGP------GGASGLGV------LTHRNKDG 522
Query: 361 SPIRTLSPSTTIRTNPSASTSF 382
+ +R + T+ NP F
Sbjct: 523 TGVRVIVAG-TLDINPDDDYGF 543
Score = 33.5 bits (76), Expect = 0.42
Identities = 37/229 (16%), Positives = 61/229 (26%), Gaps = 90/229 (39%)
Query: 563 DCH-----G---VKLVKNARKSVATSDSHSGAQGNHQSRKKLLLSTDLFSGNLMEDDLAS 614
D H G + +V N ++ H G + + R+ N +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTI---HFGGEKGKRIRE-----------NYSAMIFET 1695
Query: 615 LSDEDLDELLTPSNADDDLENSILEQLNLSDDDLEI----Q------ELSAKEE-REEGR 663
+ D L ++ + L Q E +A E+ + +G
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 664 RWKICVVSGVEKRIDMKVIEPYKRVLSH--GGYLAEGCHNAIIVFSACFLPHHSRADYHY 721
+G H G E ++A L S AD
Sbjct: 1753 IPADATFAG------------------HSLG----E--------YAA--L--ASLAD--- 1775
Query: 722 VMDNLFFYVLHTLDQLITEDYV-LVYLHGATSRHNMPTFSWLKRCYQMI 769
VM E V +V+ G T + +P + Y MI
Sbjct: 1776 VMS---I-----------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 2e-09
Identities = 103/664 (15%), Positives = 191/664 (28%), Gaps = 232/664 (34%)
Query: 297 CNEPLDFPNSPVLNKSIDDICLKRYKRSCQGATSGPNP----------LCVQGSETPNGS 346
C + D P S + + ID I + + L +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMS------------KDAVSGTLRLFWTLLSKQE---EMV 79
Query: 347 QETEMNCIRSNAS--ASPIRTLSPSTTIRTNPSASTSFESVTLARSSLNASDFTNNISAE 404
Q+ +R N SPI+T ++ T + R L + +N
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----RMYIE---QRDRL----YNDNQVFA 127
Query: 405 SY----LKKYDDINAQVRAYLNKTQSQD---LH------KT-LQSAAEANGATSVRQSEL 450
Y L+ Y ++R L + + + KT + A + ++
Sbjct: 128 KYNVSRLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWV--ALDV-----CLSYKV 176
Query: 451 EALNERSHRYLSTNAEDDISSALGASKVMYVSDDEDVSVYDTIVSQDCHGVKLVKNARKS 510
+ + +L+ + + L + + D + + S
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----------------WTSRSDHS 220
Query: 511 VPPPGDNHSGAQRNHQNRKKLLLSTDLFSGNLMEDDCIDDEDVSVYDTIVSQDCHGVK-L 569
HS ++LL S + L+ + + + + ++ K L
Sbjct: 221 SNIKLRIHSIQAE----LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKIL 269
Query: 570 VKNARKSVATSDSHSGAQGNHQSRKKLLLSTDLFSGNLMEDDLASL-------SDEDL-- 620
+ K V D S A H +S D S L D++ SL +DL
Sbjct: 270 LTTRFKQVT--DFLSAATTTH-------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 621 ------------------DELLTPSN----ADDDLENSI---LEQLNLSD-----DDLEI 650
D L T N D L I L L ++ D L +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 651 ---------QELS---AKEEREEGRRW--KICVVSGVEKRIDMKVIEPYKRVLS-HGGYL 695
LS + + K+ S VEK+ P + +S YL
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-------PKESTISIPSIYL 433
Query: 696 AEGC--------HNAII---VFSACFLPHHSRADYHYVMDNLFF-YVLHTLDQL-ITEDY 742
H +I+ F Y +D F+ ++ H L + E
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQYFYSHIGHHLKNIEHPERM 490
Query: 743 VL---VYLHGATSRHNMPTFSWLKRCYQMIDRKLKKN-------------LKQL-----Y 781
L V+L F +L+ +K++ + L+QL Y
Sbjct: 491 TLFRMVFL----------DFRFLE-------QKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 782 LV--HATF--WLKTII----VMSKPFISSKFSKKIQFIMSLNELAERLPIEEASIPDKVR 833
+ + + I+ + + I SK++ ++ + E +EA + +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM-AE-------DEAIFEEAHK 585
Query: 834 QYDK 837
Q +
Sbjct: 586 QVQR 589
Score = 41.8 bits (97), Expect = 0.001
Identities = 47/349 (13%), Positives = 103/349 (29%), Gaps = 97/349 (27%)
Query: 581 DSHSGAQGNHQSRKKLLLSTDLFSGNL----MEDDLAS-LSDEDLDELLTPSNADDDL-- 633
D +G +Q + L + D F N ++D S LS E++D ++ +A
Sbjct: 8 DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 634 --------ENSILEQL---NLSDD--------DLEIQELSAKEEREEGRRWKICVVSGVE 674
+ ++++ L + E ++ S +R ++ + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQ 124
Query: 675 KRIDMKV--IEPYKRV------LSHGGYLA----EGCHNAIIVFSACFLPHHSRADYHYV 722
V ++PY ++ L + G + C
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-----LSYKVQCK 179
Query: 723 MDNLFFYV--------------LHTLDQLITEDYVLVYLHGATSRHNMPTF-SWLKRCYQ 767
MD F++ L L I ++ H + + + + + L+R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--L 237
Query: 768 MIDRKLKKNLKQLYLVHATFWLKTIIVMSKPF-------ISSKFSKKIQFIM-------- 812
+ + + L LV F ++++F + F+
Sbjct: 238 LKSKPYENCL----LVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 813 ------------SLNELAERLPIEEASIPDKVRQYDKIKLSMNASSQHQ 849
+ L + L +P +V + +LS+ A S
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Score = 41.0 bits (95), Expect = 0.002
Identities = 90/565 (15%), Positives = 157/565 (27%), Gaps = 187/565 (33%)
Query: 23 KNHVNSYRR-----ETNGEDNLKRSRDNSRSRDHG--------EVLDNDLAKTDQYVGGD 69
K+ V+ R + E+ +++ + ++ E + T Y+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQR 116
Query: 70 KSLTNSFEPIIEGSQERKATKEKLMNSSFEQIIEKN----------------STALNRDT 113
L N + + + R KL + E KN L+
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 114 QN---------NIG-----------LVNNYHNLTPEL----DSPDSDDL-FDSHKVPSRR 148
Q N+ L + + P D + L S + RR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 149 F---NSHARS------------IENNNANC----------NTPENDVETVTELSNNN--- 180
+ N +C T T T +S ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 181 ----SDSTNISANVIETNTPVHMTEPSELNLNNNPTNHSV----TQNDLNREKKDRQEKD 232
+ ++ ++ P E+ L NP S+ ++ L D +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQ---DLPREV-LTTNPRRLSIIAESIRDGLAT--WDNWKHV 350
Query: 233 LSTKVSDLLEKVSSLNANLNPK---------VVFHTPQTT--PLQTTPL----------- 270
K++ ++E SSLN L P VF P + P L
Sbjct: 351 NCDKLTTIIE--SSLN-VLEPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVM 405
Query: 271 ----KLKLNSLPVQSHPLEQ----HALDRTDQEYCNEPLDFPNSPVLNKSIDDICLKRYK 322
KL SL V+ P E ++ Y + N L++SI + Y
Sbjct: 406 VVVNKLHKYSL-VEKQPKESTISIPSI------YLELKVKLENEYALHRSI----VDHYN 454
Query: 323 RSCQGATSGPNPLCVQG----------SETPNGSQETEMNC-----------IRS----- 356
+ P + + + T IR
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 357 NASASPIRTLSPSTT----IRTNPSASTSFESVTLARSSLNA-SDFTNNISAESYLKKYD 411
NAS S + TL I N +E + +NA DF I KY
Sbjct: 515 NASGSILNTLQQLKFYKPYICDN---DPKYERL------VNAILDFLPKIEENLICSKYT 565
Query: 412 DINAQVRAYLNKTQS--QDLHKTLQ 434
D+ ++ A + + ++ ++ HK +Q
Sbjct: 566 DL-LRI-ALMAEDEAIFEEAHKQVQ 588
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 44.0 bits (104), Expect = 1e-04
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 719 YHYVMDNLFFYVLHTLDQLITEDYVLVY-------LHGATSRH-NMPTFSWLKRCYQMID 770
D + L++L+ + + G T + S L++ M+
Sbjct: 168 QEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQ 227
Query: 771 RKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS-LNELAERLPIE 824
K ++ +H ++ T + KPF+ SK +++ L+ + +
Sbjct: 228 DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDEN 282
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 720 HYVMDNLFFYVLHTLDQLITEDYVLVY-------LHGATSRH-NMPTFSWLKRCYQMIDR 771
+ ++F L T + ++ E L G H T S K+ ++
Sbjct: 110 VFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTD 169
Query: 772 KLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMSLNE------LAERLPIE 824
++ ++L++ + M KPF++ K ++I + + + LP+E
Sbjct: 170 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLE 228
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 36.1 bits (83), Expect = 0.051
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 777 LKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFI--MSLNELAERLPIEE 825
LK+L++V A + KPF+S KKI + L + + ++
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQ 236
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 34.2 bits (78), Expect = 0.22
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 20/73 (27%)
Query: 727 FFYVLHTLDQLITED-------------YVLVYLHGATSRHNMPTFSWLKRCYQMIDR-- 771
+ L L + + SR+ + S K+ MI+
Sbjct: 58 LYRALALLSAALRSGQDEVQIEEEAAYEDLAYMAD--CSRNAVLNLSSAKK---MIEVLA 112
Query: 772 KLKKNLKQLYLVH 784
+ + +LY+
Sbjct: 113 LMGYSTFELYMED 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.31
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 7/21 (33%)
Query: 404 ESYLKKY-DD------INAQV 417
++ LK Y DD I A +
Sbjct: 26 QASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 10/28 (35%)
Query: 767 QMIDRKLKKNLKQLY-------L-VHAT 786
Q + +KL+ +LK LY L + AT
Sbjct: 20 QAL-KKLQASLK-LYADDSAPALAIKAT 45
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 32.4 bits (74), Expect = 0.55
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 747 LHGATSRHNMPTFSWLKRCYQMIDRKLKKN----LKQLYLVHATFWLKTIIVMSKPFISS 802
L G + S+++ + + + + Y+++A F T + KPF+
Sbjct: 176 LKGISISSAYSVMSYVREASYI----SQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDP 231
Query: 803 KFSKKIQFIMS--LNELAERLPIEEASIPDK 831
KI + S EL +++P E +P K
Sbjct: 232 VTVSKIFILGSSYQKELLKQIPAEN--LPVK 260
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 32.5 bits (74), Expect = 0.57
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 777 LKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMS--LNELAERLPIEEASIPDK 831
+ + Y++H+ F T+ M KPF+ KI + S EL +++PIE +P K
Sbjct: 221 MGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN--LPVK 275
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo
sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 790 KTIIVMSKPFISSKFSK-KIQFIMSLNELAERL------PIEEASIPDKVRQYDKIKLSM 842
+++++ F+ + K ++ ++ AE + A+ P ++R +
Sbjct: 67 CRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRG 126
Query: 843 NASSQHQ 849
Q
Sbjct: 127 PDGGFRQ 133
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 30.6 bits (69), Expect = 1.4
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 608 MEDDLASLSDEDLDELLTPSNADDDLENSILEQLNLSDDDLEIQELS 654
+ + L L++ L++ + LEN + +Q++L + ++
Sbjct: 14 LPEQLPLLTNCQLED-------EAILENHLYQQIDLPNQEVRNLVFR 53
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 28.7 bits (65), Expect = 6.6
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 354 IRSNA-SASPIRTLSPS 369
+RSN +A PIRTL+ S
Sbjct: 184 VRSNLVAAGPIRTLAMS 200
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A
{Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A
1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A*
1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A
4al2_A 3k6l_A* 1dff_A 1def_A ...
Length = 168
Score = 28.2 bits (64), Expect = 7.3
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 760 SWLKRCYQMIDRKLKKNLKQ 779
S LK+ Q I +K++K +
Sbjct: 147 SPLKQ--QRIRQKVEKLDRL 164
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 28.3 bits (64), Expect = 8.6
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 591 QSRKKLLLSTDLFSGNLMEDDLASLSDEDLDELLT 625
+ K+ L + SG + + LS E+L +++
Sbjct: 234 LAFKRSLFKDIISSG---DSWITELSTEELRKVIE 265
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A
{Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A
3nxz_A 3ny0_A
Length = 170
Score = 27.9 bits (62), Expect = 9.0
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 629 ADDDLENSILEQLNLSDDDLEIQELSAKEEREEGRRWKICVVSGVEKRIDMKVIEPYKRV 688
D + + ++ ++L + + + G + I +K + K
Sbjct: 11 RDLNPLDFSVDYVDLEWFETRK------------KIARFKTRQGKDIAIRLK--DAPKLG 56
Query: 689 LSHGGYLAEGCHNAIIV 705
LS G L + I V
Sbjct: 57 LSQGDILFKEEKEIIAV 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 28.7 bits (65), Expect = 9.4
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 591 QSRKKLLLSTDLFSGNLMEDDLASLSDEDLDELLT 625
+ K+ L D+ S + + LS E+L +++
Sbjct: 463 LAFKRSL-FKDIISSG--DSWITELSTEELRKVIE 494
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.356
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,902,837
Number of extensions: 692970
Number of successful extensions: 1159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 38
Length of query: 849
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 747
Effective length of database: 3,853,851
Effective search space: 2878826697
Effective search space used: 2878826697
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.5 bits)