RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17355
         (849 letters)



>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 743 VLVYLHGATSRH-NMPTFSWLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFIS 801
           ++    G   +H   P          M +    + LK+L++V A         + KPF+S
Sbjct: 76  IIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS 135

Query: 802 SKFSKKIQFI--MSLNELAERLPIE 824
               KKI  +       L + +  +
Sbjct: 136 EDTRKKIMVLGANWKEVLLKHISPD 160


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 28.5 bits (63), Expect = 3.0
 Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 598 LSTDLFSGNLMEDDLASLSDE--DLDELLTPSNADDDLENSILEQLNLSDDDLEIQELSA 655
           +   L   +L  + + +   E   ++E+   +N   + +  I       +++LEI++   
Sbjct: 8   IEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEK 67

Query: 656 KEEREE 661
           + ++  
Sbjct: 68  ELDQLY 73


>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854
           {Oenococcus oeni [TaxId: 1247]}
          Length = 135

 Score = 27.1 bits (59), Expect = 4.6
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 11/89 (12%)

Query: 761 WLKRCYQMIDRKLKKNLKQLYLVHATFWLKTIIVMSKPFISSKFSKKIQFIMSLNELAER 820
            LK     +  +     K+  L      +   +  +K              +   +L   
Sbjct: 6   LLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYLSRNKNKE-----------VLQRDLESE 54

Query: 821 LPIEEASIPDKVRQYDKIKLSMNASSQHQ 849
             I+ ++    +++ +  KL     S   
Sbjct: 55  FSIKSSTATVLLQRMEIKKLLYRKVSGKD 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,881,210
Number of extensions: 131264
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 5
Length of query: 849
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 756
Effective length of database: 1,130,706
Effective search space: 854813736
Effective search space used: 854813736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.3 bits)