BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17358
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 264 bits (674), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 125/196 (63%), Positives = 146/196 (74%)
Query: 7 AHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYXXXXXXXXXXXXXXXXXXTQFIS 66
+HTDIKVPDFS YRR V D +++E+ EARK FSY +QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 67 SMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDP 126
SM+ASADVLAM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR S LRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 127 QADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 186
Q D ERVK P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 187 EVPKYEFPEPGLLVVG 202
EVP YEF +++VG
Sbjct: 181 EVPSYEFTSDDMVIVG 196
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 122/196 (62%), Positives = 144/196 (73%)
Query: 7 AHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYXXXXXXXXXXXXXXXXXXTQFIS 66
+HTDIKVP+FS YRR ++RE++ +RK FSY TQF+S
Sbjct: 1 SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVS 60
Query: 67 SMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDP 126
SM+ASADVLAM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR S LRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 127 QADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 186
Q D ERVK P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 187 EVPKYEFPEPGLLVVG 202
EVP YEF +++VG
Sbjct: 181 EVPSYEFTSDDMVIVG 196
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 259 bits (663), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 141/195 (72%)
Query: 8 HTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYXXXXXXXXXXXXXXXXXXTQFISS 67
H D+ VPDFS YRR+ V D +++ + E RK FSY TQFISS
Sbjct: 2 HNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISS 61
Query: 68 MAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQ 127
++ASADVLA++KIE+KL+DIPEG+NV FKWRGKPLF+RHR S LRDPQ
Sbjct: 62 LSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQ 121
Query: 128 ADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLE 187
D +RVK P+W++L+GVCTHLGCVP+AN+GDFGGYYCPCHGSHYDASGRIRKGPAP NLE
Sbjct: 122 HDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLE 181
Query: 188 VPKYEFPEPGLLVVG 202
VP Y+F L+VVG
Sbjct: 182 VPTYQFVGDDLVVVG 196
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron-
Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/129 (72%), Positives = 106/129 (82%)
Query: 74 VLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQADSERV 133
VLAM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR S LRDPQ D ERV
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 60
Query: 134 KDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEF 193
K P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVP YEF
Sbjct: 61 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 120
Query: 194 PEPGLLVVG 202
+++VG
Sbjct: 121 TSDDMVIVG 129
>pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|E Chain E, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|P Chain P, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex
pdb|1P84|E Chain E, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|E Chain E, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|E Chain E, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|P Chain P, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|E Chain E, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|P Chain P, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 185
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 116/171 (67%), Gaps = 2/171 (1%)
Query: 32 RETEEARKAFSYXXXXXXXXXXXXXXXXXXT--QFISSMAASADVLAMAKIEVKLADIPE 89
+E +A K SY T FISSM A+ADVLAMAK+EV LA IP
Sbjct: 14 KENNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPL 73
Query: 90 GRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQADSERVKDPKWLVLIGVCTHLG 149
G+NV KW+GKP+FIRHR S L+DPQ D++RVKDP+WL+++G+CTHLG
Sbjct: 74 GKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLG 133
Query: 150 CVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLV 200
CVP+ AGDFGG++CPCHGSHYD SGRIRKGPAPLNLE+P YEF ++V
Sbjct: 134 CVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIV 184
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|F Chain F, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 190
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 90/153 (58%), Gaps = 14/153 (9%)
Query: 64 FISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTL 123
++ M SADV A+A I+V ++ + G +T KW GKP+FIR R L
Sbjct: 38 LVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQL 97
Query: 124 RD-----------PQADSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGS 169
D P D R D +WLV+IGVCTHLGCVP+ + AGDFGG++CPCHGS
Sbjct: 98 IDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGS 157
Query: 170 HYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
HYD SGRIR+GPAP NL +P EF + + +G
Sbjct: 158 HYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG 190
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 19/158 (12%)
Query: 64 FISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTL 123
I+ M ASADV AMA I V ++ + G +T KWRGKP+FIR R L
Sbjct: 34 LINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGAL 93
Query: 124 RDPQADS------------------ERVKDPKWLVLIGVCTHLGCVPVAN-AGDFGGYYC 164
RD A++ + +WLV++GVCTHLGCVP+ + +GDFGG++C
Sbjct: 94 RDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFC 153
Query: 165 PCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
PCHGSHYD++GRIRKGPAP NL++P F + + +G
Sbjct: 154 PCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG 191
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 88/154 (57%), Gaps = 15/154 (9%)
Query: 64 FISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTL 123
I+ M SADV A+A I V ++ + G +T K+ GKP+FIR R L
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 124 RDPQA------------DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHG 168
D A D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHG 145
Query: 169 SHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
SHYD++GRIRKGPAP NL +P +F + + +G
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 179
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 64 FISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTL 123
I+ M SADV A+A I V ++ + G +T K+ GKP+FIR R L
Sbjct: 34 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 93
Query: 124 RDPQA------------DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHG 168
D A D R D +WLV+ GVCTHLGC P+ +GDFGG++CPCHG
Sbjct: 94 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 153
Query: 169 SHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
SHYD++GRIRKGPAP NL +P +F + + +G
Sbjct: 154 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 187
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 64 FISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTL 123
I+ M SADV A+A I V ++ + G +T K+ GKP+FIR R L
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 124 RDPQA------------DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHG 168
D A D R D +WLV+ GVCTHLGC P+ +GDFGG++CPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 145
Query: 169 SHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
SHYD++GRIRKGPAP NL +P +F + + +G
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 179
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHGSHYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHG+HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGTHYDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHG+HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGAHYDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 79/141 (56%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRXXXXXXXXXXXXXSTLRDPQA-------- 128
+A I V ++ + G +T K+ GKP+FIR R L D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 129 ----DSERVKDP--KWLVLIGVCTHLGCVPVAN-AGDFGGYYCPCHGSHYDASGRIRKGP 181
D R D +WLV+ GVCTHLGCVP+ +GDFGG++CPCHG HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGCHYDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f
Complex Iron- Sulfur Subunit From Thermosynechococcus
Elongatus Bp-1
Length = 133
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 141 LIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLV 200
L VCTHLGCV N + + CPCHGS YD++G++ +GPAPL+L + K E LV
Sbjct: 57 LNAVCTHLGCVVPWNVSE-NKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLV 115
>pdb|1Q90|C Chain C, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 127
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 141 LIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLV 200
L VCTHLGCV A + + CPCHGS Y+A G++ +GPAPL+L + + E GL+
Sbjct: 51 LNAVCTHLGCVVPWVAAE-NKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVT 109
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
VCTHLGCV NA + + CPCHGS YD +GR+ +GPAPL+L +
Sbjct: 107 VCTHLGCVVPWNAAE-NKFKCPCHGSQYDETGRVIRGPAPLSLAL 150
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
VCTHLGCV NA + + CPCHGS YD +G++ +GPAPL+L +
Sbjct: 107 VCTHLGCVVPWNAAE-NKFKCPCHGSQYDETGKVIRGPAPLSLAL 150
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|D Chain D, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 179
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
VCTHLGCV NA + + CPCHGS YDA+G++ +GPAP +L +
Sbjct: 107 VCTHLGCVVPWNAAE-NKFKCPCHGSQYDATGKVVRGPAPKSLAL 150
>pdb|1RFS|A Chain A, Rieske Soluble Fragment From Spinach
Length = 139
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
VCTHLGCV NA + + CPCHGS Y+ GR+ +GPAPL+L +
Sbjct: 66 VCTHLGCVVPFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLAL 109
>pdb|1NYK|A Chain A, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
pdb|1NYK|B Chain B, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
Length = 165
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYD 172
VCTHLGC+ D CPCHG YD
Sbjct: 86 VCTHLGCIVSQWVADEEAALCPCHGGVYD 114
>pdb|3FOU|A Chain A, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
pdb|3FOU|B Chain B, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
Length = 156
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYD 172
VCTHLGC+ D CPCHG YD
Sbjct: 86 VCTHLGCIVSQWVADEEAALCPCHGGVYD 114
>pdb|1JM1|A Chain A, Crystal Structure Of The Soluble Domain Of The Rieske
Protein Ii (Soxf) From Sulfolobus Acidocaldarius
Length = 204
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 144 VCTHLGC-----VPVANAGDFGGY------YCPCHGSHYDA--SGRIRKGPAPLNLEV 188
VC HLGC V V++ D G Y +CPCHGS Y G + GPAP L +
Sbjct: 93 VCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPI 150
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
+ LG P AN GD + P HG+ +D +G+ P L V
Sbjct: 233 IAGSLGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSV 277
>pdb|1G8J|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLE--VPKYEFPEPGLL 199
+CTH+GC P + + CPCH + +DA +G++ G A +L + +Y+ L
Sbjct: 59 LCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALT 117
Query: 200 VVG 202
VG
Sbjct: 118 AVG 120
>pdb|1G8K|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|F Chain F, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|H Chain H, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLE--VPKYEFPEPGLL 199
+CTH+GC P + + CPCH + +DA +G++ G A +L + +Y+ L
Sbjct: 59 LCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALT 117
Query: 200 VVG 202
VG
Sbjct: 118 AVG 120
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G + A+AG+ + C HG YD +G + P
Sbjct: 83 RQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGR 176
G+ LG P N GD + P HGS D +G+
Sbjct: 236 GLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 269
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGR 176
G+ LG P N GD + P HGS D +G+
Sbjct: 235 GLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 268
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGR 176
G+ LG P N GD + P HGS D +G+
Sbjct: 236 GLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 269
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGCVPV-ANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R D + VC H G V A AG+ G+ C HG Y ++G ++ P
Sbjct: 66 RQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVP 116
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGCVPVA-NAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 186
R D + VC H G V+ AG+ G+ C HG + ++G ++ P +L
Sbjct: 68 RQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDL 123
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGCVPVA-NAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 186
R D + VC H G V+ AG+ G+ C HG + ++G ++ P +L
Sbjct: 68 RQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDL 123
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGCVPV-ANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G V ++ G+ + C HG YD +G + P
Sbjct: 87 RQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVP 137
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181
R KD V + C H G + ++ G+ + C HG YD +G + P
Sbjct: 88 RQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVP 138
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 121 STLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKG 180
+ ++ Q + V K L G C ++GC+P + YY HG+ + + G I
Sbjct: 21 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRG-IEMS 79
Query: 181 PAPLNLE 187
LNL+
Sbjct: 80 EVRLNLD 86
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 132 RVKDPKWLVLIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPK 190
R K+ + V + C H G + A+ G+ + C HG YD G + + VP
Sbjct: 85 RQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNL--------VSVPF 136
Query: 191 YEFPEPGL 198
E PGL
Sbjct: 137 EEQAFPGL 144
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 121 STLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKG 180
+ ++ Q + V K L G C ++GC+P + YY HG + + G I
Sbjct: 21 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRG-IEMS 79
Query: 181 PAPLNLE 187
LNL+
Sbjct: 80 EVRLNLD 86
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 121 STLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKG 180
+ ++ Q + V K L G C ++GC+P + YY HG + + G I
Sbjct: 42 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRG-IEMS 100
Query: 181 PAPLNLE 187
LNL+
Sbjct: 101 EVRLNLD 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,271,252
Number of Sequences: 62578
Number of extensions: 179216
Number of successful extensions: 481
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 49
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)