Query psy17358
Match_columns 202
No_of_seqs 216 out of 1954
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:15:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_E Ubiquinol-cytochrome C 100.0 1.5E-54 5.1E-59 353.1 18.8 196 7-202 1-196 (196)
2 3cx5_E Cytochrome B-C1 complex 100.0 2.9E-49 1E-53 319.5 21.1 184 9-202 2-185 (185)
3 2qjy_C Ubiquinol-cytochrome C 100.0 6.6E-41 2.3E-45 271.0 18.7 166 34-202 7-187 (187)
4 2nwf_A Ubiquinol-cytochrome C 100.0 5.3E-36 1.8E-40 232.2 14.9 125 78-202 2-141 (141)
5 1rie_A Rieske iron-sulfur prot 100.0 1.5E-33 5.2E-38 215.3 14.2 127 76-202 3-129 (129)
6 1vf5_D Rieske iron-sulfur prot 100.0 1.2E-30 4.2E-35 209.4 3.0 137 34-201 11-162 (179)
7 4aay_B AROB; oxidoreductase, r 99.9 2.3E-28 7.7E-33 195.5 8.6 106 79-202 51-162 (175)
8 1nyk_A Rieske iron-sulfur prot 99.9 5E-26 1.7E-30 180.4 3.5 120 78-200 21-144 (165)
9 3gce_A Ferredoxin component of 99.9 1.1E-23 3.7E-28 158.7 11.4 92 82-201 15-109 (121)
10 1g8k_B Arsenite oxidase; molyb 99.9 5.2E-24 1.8E-28 163.1 9.6 104 80-201 9-119 (133)
11 3dqy_A Toluene 1,2-dioxygenase 99.9 7.3E-24 2.5E-28 155.7 9.3 91 83-201 7-98 (106)
12 2qpz_A Naphthalene 1,2-dioxyge 99.9 2E-23 6.9E-28 152.5 10.7 90 83-199 9-99 (103)
13 1fqt_A Rieske-type ferredoxin 99.9 2.8E-23 9.7E-28 154.1 10.6 92 82-201 10-103 (112)
14 2i7f_A Ferredoxin component of 99.9 4E-23 1.4E-27 152.2 8.6 90 83-199 9-100 (108)
15 2de6_D Ferredoxin component of 99.9 1.1E-22 3.6E-27 151.9 10.2 90 83-199 10-101 (115)
16 1vm9_A Toluene-4-monooxygenase 99.9 1.8E-22 6E-27 149.5 9.7 91 83-201 7-99 (111)
17 1rfs_A Rieske protein; iron-su 99.9 7.9E-22 2.7E-26 152.1 8.9 89 84-199 29-120 (139)
18 1jm1_A Rieske iron-sulfur prot 99.8 1.5E-22 5.1E-27 165.4 2.4 68 135-202 84-166 (204)
19 3c0d_A Putative nitrite reduct 99.8 3E-21 1E-25 144.8 8.9 90 83-199 11-106 (119)
20 2jo6_A Nitrite reductase [NAD( 99.8 1.2E-20 4E-25 140.1 9.8 90 83-199 12-108 (113)
21 4aiv_A Probable nitrite reduct 99.8 2.4E-20 8.3E-25 140.2 9.2 93 83-202 15-114 (119)
22 2jza_A Nitrite reductase [NAD( 99.8 6.6E-20 2.3E-24 139.6 9.8 90 83-199 9-105 (130)
23 3azc_A Cytochrome B6-F complex 99.7 8.6E-21 2.9E-25 145.3 0.0 64 134-198 48-114 (133)
24 3d89_A Rieske domain-containin 99.7 8.4E-19 2.9E-23 137.4 5.1 90 83-199 22-130 (157)
25 3gke_A DDMC; rieske cluster, n 99.7 6.9E-17 2.3E-21 141.3 9.5 91 83-201 14-111 (349)
26 2zyl_A Possible oxidoreductase 99.7 8.8E-17 3E-21 142.5 9.7 98 75-198 22-126 (386)
27 3gkq_A Terminal oxygenase comp 99.7 3.1E-16 1.1E-20 138.6 10.4 92 80-198 33-136 (389)
28 3gcf_A Terminal oxygenase comp 99.7 3.4E-16 1.2E-20 138.7 10.1 93 80-199 36-140 (394)
29 3vca_A Ring-hydroxylating diox 99.6 5.9E-16 2E-20 138.3 10.4 91 83-199 49-149 (412)
30 3n0q_A Putative aromatic-ring 99.6 9.8E-16 3.4E-20 136.8 10.9 91 83-199 47-147 (409)
31 2gbw_A Biphenyl 2,3-dioxygenas 99.6 1.3E-15 4.6E-20 137.3 11.2 91 83-199 43-147 (454)
32 2bmo_A Oxygenase-alpha NBDO; n 99.6 1.8E-15 6.3E-20 136.1 10.0 91 83-199 42-147 (447)
33 2de6_A Terminal oxygenase comp 99.6 2.9E-15 1E-19 132.7 10.5 90 83-199 34-134 (392)
34 1z01_A 2-OXO-1,2-dihydroquinol 99.6 2.6E-15 8.9E-20 135.2 10.3 93 79-198 44-148 (446)
35 1uli_A Biphenyl dioxygenase la 99.6 2.6E-15 8.9E-20 135.7 9.2 91 83-199 61-164 (460)
36 2b1x_A Naphthalene dioxygenase 99.6 5.2E-15 1.8E-19 134.0 10.2 75 83-183 51-127 (470)
37 3gzx_A Biphenyl dioxygenase su 99.5 8.1E-14 2.8E-18 126.0 9.8 74 83-182 63-138 (457)
38 1q90_R Cytochrome B6-F complex 93.4 0.15 5.3E-06 31.6 4.8 17 33-49 6-22 (49)
39 2pq4_B Periplasmic nitrate red 85.2 0.74 2.5E-05 26.4 2.8 12 35-46 2-13 (35)
40 1h2a_S Hydrogenase; SO ligand, 32.1 9.7 0.00033 32.4 0.0 20 34-53 19-38 (317)
41 4rxn_A Rubredoxin; electron tr 31.6 49 0.0017 20.4 3.3 28 160-187 2-31 (54)
42 3j20_Y 30S ribosomal protein S 31.5 37 0.0013 20.6 2.6 40 132-172 9-49 (50)
43 2wpn_A Periplasmic [nifese] hy 29.3 11 0.00039 31.9 0.0 19 35-53 2-20 (317)
44 4gne_A Histone-lysine N-methyl 27.1 22 0.00074 25.2 1.1 33 135-168 24-60 (107)
45 2d9m_A Zinc finger CCCH-type d 27.0 18 0.00063 23.7 0.7 9 2-10 35-43 (69)
46 3las_A Putative carbonic anhyd 25.1 19 0.00067 27.4 0.6 14 165-178 149-163 (166)
47 1yk4_A Rubredoxin, RD; electro 24.3 76 0.0026 19.3 3.2 20 161-180 2-22 (52)
48 3qy1_A Carbonic anhydrase; str 23.2 22 0.00076 28.5 0.6 16 164-179 177-193 (223)
49 1g5c_A Beta-carbonic anhydrase 22.2 24 0.00082 26.8 0.6 16 163-178 148-164 (170)
50 1ylk_A Hypothetical protein RV 22.0 24 0.00083 27.0 0.6 15 164-178 153-168 (172)
51 3j20_R 30S ribosomal protein S 22.0 21 0.0007 25.7 0.2 17 163-180 20-36 (113)
52 2v3b_B Rubredoxin 2, rubredoxi 21.6 85 0.0029 19.3 3.0 21 160-180 2-23 (55)
53 3ty4_A Probable homoisocitrate 21.4 41 0.0014 29.0 2.0 34 148-181 273-306 (366)
54 1e8j_A Rubredoxin; iron-sulfur 21.2 67 0.0023 19.5 2.5 21 160-180 2-23 (52)
55 3e3i_A Carbonic anhydrase 2, b 21.1 26 0.00088 28.3 0.6 16 164-179 174-190 (229)
56 1ym3_A Carbonic anhydrase (car 20.8 27 0.00091 27.7 0.7 15 164-178 188-203 (215)
No 1
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=100.00 E-value=1.5e-54 Score=353.09 Aligned_cols=196 Identities=72% Similarity=1.247 Sum_probs=185.1
Q ss_pred ccCCCCCCCCccccccCCCCCCCCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhhhhcccceeeccC
Q psy17358 7 AHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMAKIEVKLAD 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~fl~i~tG~~~~~g~~~A~~l~~~~~~~~~p~~~~~~~~~~~v~~~~ 86 (202)
|||||++|||++||++.++||++..++.+.+||+|||+++|+.+.+|+++|..++.+|+.+++|.++.++...+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~v~ls~ 80 (196)
T 1pp9_E 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSD 80 (196)
T ss_dssp CGGGCCCCCCTTTBCGGGCCTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCCCCEEEEGGG
T ss_pred CCCCcCCCCchHhhcccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccEEEHHH
Confidence 79999999999999999999999988778899999999999988888888888899999999999999888888999999
Q ss_pred CCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCEEEcCC
Q psy17358 87 IPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPC 166 (202)
Q Consensus 87 l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~~CPc 166 (202)
|++|+.++++|+|+|++|++++.+||....++....++||+.+.+|..+++|+|++++|||+||+|.++..+++.|.|||
T Consensus 81 l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~~~~CP~ 160 (196)
T 1pp9_E 81 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPC 160 (196)
T ss_dssp SCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTSSEEETT
T ss_pred CCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877778999999
Q ss_pred CCeEECCCCccccCCCCCCCccceEEEeCCcEEEEC
Q psy17358 167 HGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 167 HGs~FD~~G~vi~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
|||+||.+|+++.||++++|++||+++++|+.|+||
T Consensus 161 HGs~FD~~G~v~~gPa~~~L~~~p~~v~~d~~I~vg 196 (196)
T 1pp9_E 161 HGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 196 (196)
T ss_dssp TTEEECTTCCEEESSCCSCCCCCCEEEETTTEEEEC
T ss_pred CCCEECCCCCCccCCCCCCCcceeEEEEECCEEEEC
Confidence 999999999999999999999999999667888887
No 2
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=100.00 E-value=2.9e-49 Score=319.46 Aligned_cols=184 Identities=54% Similarity=1.078 Sum_probs=168.9
Q ss_pred CCCCCCCCccccccCCCCCCCCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhhhhcccceeeccCCC
Q psy17358 9 TDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMAKIEVKLADIP 88 (202)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~fl~i~tG~~~~~g~~~A~~l~~~~~~~~~p~~~~~~~~~~~v~~~~l~ 88 (202)
|||++|||++||+.. ..+++||+||++++|+.+++++++|...+.+|+.+++|.+++++.+.+++++++|+
T Consensus 2 ~~~~~~~~~~~~~~~---------~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~V~~s~l~ 72 (185)
T 3cx5_E 2 STYRTPNFDDVLKEN---------NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIP 72 (185)
T ss_dssp CTTSCCCCTTTBCCT---------TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCCCCCEEEEGGGCC
T ss_pred CCccCCCchhhccCC---------CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhccCcEEEEHHHCC
Confidence 899999999999632 24689999999999988877777777888999999999999988888999999999
Q ss_pred CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCEEEcCCCC
Q psy17358 89 EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHG 168 (202)
Q Consensus 89 ~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~~CPcHG 168 (202)
+|+.++++|+|+|++|++++.+||....++....++||+.+.+|..+++|+|++++|||+||++.++.++.+.|.|||||
T Consensus 73 ~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~~~~~~~~CPcHG 152 (185)
T 3cx5_E 73 LGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHG 152 (185)
T ss_dssp TTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTEEEETTTT
T ss_pred CCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCCCCCCEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999877766666899999999
Q ss_pred eEECCCCccccCCCCCCCccceEEEeCCcEEEEC
Q psy17358 169 SHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 169 s~FD~~G~vi~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
|+||++|+++.|||+++|++||+++ +|+.|+||
T Consensus 153 s~FD~~G~v~~gPa~~~L~v~p~~v-~~~~I~vg 185 (185)
T 3cx5_E 153 SHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 185 (185)
T ss_dssp EEECTTCCEEESSCCSCCCCCCEEE-ETTEEEEC
T ss_pred CEECCCCCEecCCCCCCcceEEEEE-ECCEEEEC
Confidence 9999999999999999999999999 56788887
No 3
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=100.00 E-value=6.6e-41 Score=271.00 Aligned_cols=166 Identities=45% Similarity=0.839 Sum_probs=145.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhhhhcccceeeccCCCCCceEEEEEcCeeEEEEeCCHHHHH
Q psy17358 34 TEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIA 113 (202)
Q Consensus 34 ~~~~RR~fl~i~tG~~~~~g~~~A~~l~~~~~~~~~p~~~~~~~~~~~v~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~ 113 (202)
.+.+||+||+++|++.+.++ |..++.||+++++|.++..+.+.+++++++|++|+.+.++|+|+||+|++++++||.
T Consensus 7 ~~~~RR~Fl~~~~~~~~~~~---a~~~~~p~v~~~~p~~~~~a~~~v~v~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~ 83 (187)
T 2qjy_C 7 HAGTRRDFLYYATAGAGAVA---TGAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIE 83 (187)
T ss_dssp --CHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCCTTTSCCCCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCchhhcccccEEEEHHHCCCCCeEEEEECCEEEEEEECCHHHhh
Confidence 36789999999998765444 335678999999999988877788899999999999999999999999999999999
Q ss_pred hhhhchhcccCCCc------------ccccccc--CCceEEEeccccCCCcccCc-ccCCCCEEEcCCCCeEECCCCccc
Q psy17358 114 KEQAVAISTLRDPQ------------ADSERVK--DPKWLVLIGVCTHLGCVPVA-NAGDFGGYYCPCHGSHYDASGRIR 178 (202)
Q Consensus 114 ~~~~v~~~~l~dp~------------~~~~r~~--~g~~~a~s~~CtHlGc~l~~-~~~~~~~~~CPcHGs~FD~~G~vi 178 (202)
....+....++||+ ....|.. +|+|+|++++|||+||+|.+ ..++.+.|.||||||+||++|+++
T Consensus 84 ~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~ 163 (187)
T 2qjy_C 84 LGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIR 163 (187)
T ss_dssp HHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEE
T ss_pred hhhccchhhccCcccccccccccccccccccccCCCCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEe
Confidence 99888888899997 5555654 89999999999999999988 455558999999999999999999
Q ss_pred cCCCCCCCccceEEEeCCcEEEEC
Q psy17358 179 KGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 179 ~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
.||++.+|++||+++++|++|+||
T Consensus 164 ~gPa~~~L~~~~~~v~~d~~i~ig 187 (187)
T 2qjy_C 164 KGPAPENLPIPLAKFIDETTIQLG 187 (187)
T ss_dssp ESSCCSCCCBCSEEEEETTEEEEC
T ss_pred CCCCCCCCceEEEEEEeCCEEEEC
Confidence 999999999999999878899997
No 4
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=100.00 E-value=5.3e-36 Score=232.17 Aligned_cols=125 Identities=48% Similarity=0.969 Sum_probs=114.9
Q ss_pred ccceeeccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCc------------ccccccc--CCceEEEec
Q psy17358 78 AKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQ------------ADSERVK--DPKWLVLIG 143 (202)
Q Consensus 78 ~~~~v~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~------------~~~~r~~--~g~~~a~s~ 143 (202)
+.+++|+++|++|++++++|+|+|+||++|+++|++...++.+..|+||+ .+.+|.. +|+|+|+++
T Consensus 2 ~~~~vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~ 81 (141)
T 2nwf_A 2 ASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 81 (141)
T ss_dssp CCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEEC
T ss_pred CCEEEecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeC
Confidence 45789999999999999999999999999999999999999889999998 5667765 899999999
Q ss_pred cccCCCcccCc-ccCCCCEEEcCCCCeEECCCCccccCCCCCCCccceEEEeCCcEEEEC
Q psy17358 144 VCTHLGCVPVA-NAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 144 ~CtHlGc~l~~-~~~~~~~~~CPcHGs~FD~~G~vi~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
+|||+||+|.+ +.++.+.|.||||||+||++|+++.|||+.+|++||+++++|+.|+||
T Consensus 82 ~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~pv~v~~d~~i~vg 141 (141)
T 2nwf_A 82 VCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 141 (141)
T ss_dssp CCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCSCCCBCSEEESSSSEEEEC
T ss_pred cCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCCCCCceeEEEEECCEEEEC
Confidence 99999999998 666668999999999999999999999999999999999667788887
No 5
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=100.00 E-value=1.5e-33 Score=215.25 Aligned_cols=127 Identities=76% Similarity=1.418 Sum_probs=117.6
Q ss_pred hcccceeeccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcc
Q psy17358 76 AMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVAN 155 (202)
Q Consensus 76 ~~~~~~v~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~ 155 (202)
+.+.+++++++|++|+.+++.|.|+|++|+++++++|.....+....++||+...+|..+|+++|++++|||+||+|.++
T Consensus 3 a~~~~~v~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 3 AMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp CCSSEEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred ccCceEeeHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 44567889999999999999999999999999999999988888899999999999999999999999999999999988
Q ss_pred cCCCCEEEcCCCCeEECCCCccccCCCCCCCccceEEEeCCcEEEEC
Q psy17358 156 AGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 156 ~~~~~~~~CPcHGs~FD~~G~vi~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
..+.+.|.||||||+||++|+++.||++.+|++||+++++|+.|+||
T Consensus 83 ~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~~l~~~~v~v~~~~~v~vg 129 (129)
T 1rie_A 83 AGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 129 (129)
T ss_dssp CTTTEEEEETTTTEEEETTCCEEESSCCSCCCCCCEEESSSSEEEEC
T ss_pred cCCCCEEEcCCCCCEEcCCCCEeeCCCCCCCCceeEEEEeCCEEEEC
Confidence 77668999999999999999999999999999999999556778887
No 6
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.96 E-value=1.2e-30 Score=209.40 Aligned_cols=137 Identities=31% Similarity=0.561 Sum_probs=97.8
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCcChhhhhcc-cce-------ee----ccCCCCCceEEEE-EcCe
Q psy17358 34 TEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMA-KIE-------VK----LADIPEGRNVTFK-WRGK 100 (202)
Q Consensus 34 ~~~~RR~fl~i~tG~~~~~g~~~A~~l~~~~~~~~~p~~~~~~~~-~~~-------v~----~~~l~~g~~~~~~-~~g~ 100 (202)
..++||+||+.++++.+.++++ .++.+++..+.|.+...+.+ .+. +. ++++++|+...+. +.++
T Consensus 11 ~~~~RR~Fl~~~~~~~~~~~~~---~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~~~~g~ 87 (179)
T 1vf5_D 11 PDMGRRQFMNLLAFGTVTGVAL---GALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGD 87 (179)
T ss_dssp -CCCCCTTSCTTHHHHHHHHHH---HHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEESCSSSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEeccCCC
Confidence 4589999999888765443322 34556655555544332221 111 11 3567777777665 5666
Q ss_pred eEEEEeCCHHHHHhhhhchhcccCCCccccccccCCce--EEEeccccCCCcccCcccCCCCEEEcCCCCeEECCCCccc
Q psy17358 101 PLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKW--LVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIR 178 (202)
Q Consensus 101 pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~--~a~s~~CtHlGc~l~~~~~~~~~~~CPcHGs~FD~~G~vi 178 (202)
++++++ ..+|++ +|++++|||+||+|.|+..+ +.|.||||||+||.+|+++
T Consensus 88 ~~~lv~--------------------------~~~g~~~~~a~~~~CtH~G~~l~~~~~~-~~~~CP~Hgs~Fd~~G~~~ 140 (179)
T 1vf5_D 88 PTYIVV--------------------------ESKEAIRDYGINAVCTHLGCVVPWNAAE-NKFKCPCHGSQYDETGRVI 140 (179)
T ss_dssp CEECCB--------------------------CTTCCBCSCCCBCBCTTTSCBCCBCSSS-SSEECTTTCCEECSSSCCC
T ss_pred eEEEEE--------------------------ECCCcEEEEEEeCccCCCCCCCcccCCC-CEEECCCCCCEECCCCcEe
Confidence 665432 346776 99999999999999998754 8999999999999999999
Q ss_pred cCCCCCCCccceEEEeCCcEEEE
Q psy17358 179 KGPAPLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 179 ~GPA~~~L~~~p~~i~~~~~~~i 201 (202)
.|||+++|++||++++++. |+|
T Consensus 141 ~gPa~~~L~~~~v~v~~g~-v~v 162 (179)
T 1vf5_D 141 RGPAPLSLALCHATVQDDN-IVL 162 (179)
T ss_dssp SSSCCSCCBCCCCCCSSSS-CCC
T ss_pred cCCCCCCCCeEEEEEECCE-EEE
Confidence 9999999999999997554 444
No 7
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.95 E-value=2.3e-28 Score=195.52 Aligned_cols=106 Identities=15% Similarity=0.232 Sum_probs=87.7
Q ss_pred ccee-eccCCCCCceEEEEEcC--eeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcc
Q psy17358 79 KIEV-KLADIPEGRNVTFKWRG--KPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVAN 155 (202)
Q Consensus 79 ~~~v-~~~~l~~g~~~~~~~~g--~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~ 155 (202)
++.+ ++++|++|+.+.+.+.+ .+++|++.+. ....+|+.+|+++|++++|||+||+|.|+
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~-----------------~~~~~r~~~G~v~A~~n~CpH~G~~L~~g 113 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGT-----------------RVEGGVGPDGDIVGFSTICPHKGFPLSYS 113 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSS-----------------CCTTCBTTTTCEEEEECBCTTTCCBCEEE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEccc-----------------ccccccCCCCEEEEEeCCCCCCCCCCccC
Confidence 4445 88999999999999964 5888876421 13456778999999999999999999998
Q ss_pred cCCCCEEEcCCCCeEECCC--CccccCCCCCCCccceEEEe-CCcEEEEC
Q psy17358 156 AGDFGGYYCPCHGSHYDAS--GRIRKGPAPLNLEVPKYEFP-EPGLLVVG 202 (202)
Q Consensus 156 ~~~~~~~~CPcHGs~FD~~--G~vi~GPA~~~L~~~p~~i~-~~~~~~ig 202 (202)
.+.+.|.||||||+||++ |+++.||+.++|+.||++++ +|.++.+|
T Consensus 114 -~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~y~v~vd~dG~V~avg 162 (175)
T 4aay_B 114 -ADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRVADNGDIFAEG 162 (175)
T ss_dssp -TTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCBEEEEECTTSEEEEEE
T ss_pred -CCCCEEEcCCCCCEECCCCCceEecCCCCCCcCEEEEEEEcCCEEEEEE
Confidence 445899999999999994 99999999999999999995 56655543
No 8
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.92 E-value=5e-26 Score=180.39 Aligned_cols=120 Identities=22% Similarity=0.426 Sum_probs=85.2
Q ss_pred ccceeeccCCCCCceEEEEEcCeeE--EEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcc
Q psy17358 78 AKIEVKLADIPEGRNVTFKWRGKPL--FIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVAN 155 (202)
Q Consensus 78 ~~~~v~~~~l~~g~~~~~~~~g~pv--~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~ 155 (202)
..+++++++|++|+++++.|+|+++ ++..++..++.....+....+ +|+... |..++ ++|++++|||+||+|..+
T Consensus 21 ~~~~v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~-~~~~~~-~~~~g-v~A~~~~CpH~G~~L~~g 97 (165)
T 1nyk_A 21 EPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEEL-APEVAQ-HAAEG-VVAYSAVCTHLGCIVSQW 97 (165)
T ss_dssp SCCBCBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGS-CHHHHT-TCBTT-EEEEECBCTTTCCBCCEE
T ss_pred CCcEecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhc-Cccccc-cccCC-EEEEEeecCCCCeEcccc
Confidence 4578899999999999999999885 322221111100001111222 222211 33444 999999999999999865
Q ss_pred cCCCCEEEcCCCCeEECC-CCc-cccCCCCCCCccceEEEeCCcEEE
Q psy17358 156 AGDFGGYYCPCHGSHYDA-SGR-IRKGPAPLNLEVPKYEFPEPGLLV 200 (202)
Q Consensus 156 ~~~~~~~~CPcHGs~FD~-~G~-vi~GPA~~~L~~~p~~i~~~~~~~ 200 (202)
..+.+.|.||||||+||+ +|. ++.||++.+|++|++++++|.+++
T Consensus 98 ~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v~~g~V~v 144 (165)
T 1nyk_A 98 VADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVA 144 (165)
T ss_dssp EGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEEETTEEEE
T ss_pred cCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEEECCEEEE
Confidence 555589999999999999 685 999999999999999998665543
No 9
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.90 E-value=1.1e-23 Score=158.67 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=82.2
Q ss_pred eeccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcc--cCCC
Q psy17358 82 VKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVAN--AGDF 159 (202)
Q Consensus 82 v~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~--~~~~ 159 (202)
..+++|++|+.+.+.+.|.+++|++ .+|+++|++++|||+||+|.++ ..+.
T Consensus 15 ~~~~el~~g~~~~~~~~g~~v~v~r---------------------------~~g~~~A~~n~CpH~g~~L~~G~~~~~~ 67 (121)
T 3gce_A 15 ATLDQLKPGVPTAFDVDGDEVMVVR---------------------------DGDSVYAISNLCSHAEAYLDMGVFHAES 67 (121)
T ss_dssp EEGGGSCTTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTT
T ss_pred EEHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCCCCceeecC
Confidence 3789999999999999999998864 2799999999999999999987 5566
Q ss_pred CEEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEEEE
Q psy17358 160 GGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 160 ~~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~~i 201 (202)
+.|.||||||+||+ +|+++.+|+..+|+.||+++++|. |.|
T Consensus 68 ~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v~~g~-V~v 109 (121)
T 3gce_A 68 LEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGTE-ILV 109 (121)
T ss_dssp TEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEEETTE-EEE
T ss_pred CEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEEECCE-EEE
Confidence 89999999999997 999999999999999999998665 444
No 10
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.90 E-value=5.2e-24 Score=163.13 Aligned_cols=104 Identities=22% Similarity=0.407 Sum_probs=83.9
Q ss_pred cee-eccCCCCCceEEEEEc--CeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCccc
Q psy17358 80 IEV-KLADIPEGRNVTFKWR--GKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA 156 (202)
Q Consensus 80 ~~v-~~~~l~~g~~~~~~~~--g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~ 156 (202)
+.+ .+++|++|+.+.+.|. +.+++|++.+..+ ...+..+|+++|++++|||+||+|.|..
T Consensus 9 ~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~-----------------~~~~~~~g~~~A~~n~CpH~g~~L~~~~ 71 (133)
T 1g8k_B 9 TAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPV-----------------PGGVGPDDDIVAYSVLCTHMGCPTSYDS 71 (133)
T ss_dssp EEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCC-----------------TTCBTTTTCEEEEECBCTTTCCBCEEET
T ss_pred eeEEEHHHCCCCCeEEEEecCCCceEEEEEccccc-----------------cccccCCCEEEEEeCcCCCCCCCCCccc
Confidence 344 7899999999999996 8899887642110 0012348999999999999999999854
Q ss_pred CCCCEEEcCCCCeEECC--CCccccCCCCCCCccceEEEeC-Cc-EEEE
Q psy17358 157 GDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLEVPKYEFPE-PG-LLVV 201 (202)
Q Consensus 157 ~~~~~~~CPcHGs~FD~--~G~vi~GPA~~~L~~~p~~i~~-~~-~~~i 201 (202)
+.+.|.||||||+||+ +|+++.||+..+|+.|++++++ ++ ++++
T Consensus 72 -~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 72 -SSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp -TTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTTEEEEE
T ss_pred -CCCEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEEEECCCCEEEEE
Confidence 3489999999999999 8999999999999999999984 34 5544
No 11
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.90 E-value=7.3e-24 Score=155.75 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=81.1
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCEE
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGY 162 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~ 162 (202)
.+++|++|+.+.+.+.|.+++|.+ .+|+++|++++|||+||+|.++..+.+.+
T Consensus 7 ~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~i 59 (106)
T 3dqy_A 7 RQGDLPPGEMQRYEGGPEPVMVCN---------------------------VDGEFFAVQDTCTHGDWALSDGYLDGDIV 59 (106)
T ss_dssp EGGGSCTTCEEEECCSSSCEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTEE
T ss_pred EHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCcCcEEeCCEE
Confidence 678999999999999999998764 37999999999999999999876556899
Q ss_pred EcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEEEE
Q psy17358 163 YCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 163 ~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~~i 201 (202)
.||||||+||+ +|+++.+|+..+|+.||+++++|. |.|
T Consensus 60 ~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~~~g~-v~v 98 (106)
T 3dqy_A 60 ECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDE-VHV 98 (106)
T ss_dssp ECTTTCCEEETTTCCEEETTCCSCCCEECEEEETTE-EEE
T ss_pred ECCCCCCEEeCCCCCEeCCCCCCCccEEEEEEECCE-EEE
Confidence 99999999997 999999999999999999998654 444
No 12
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.90 E-value=2e-23 Score=152.54 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=80.8
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCEE
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGY 162 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~ 162 (202)
.+++|++|+.+.+.+.|++++|.+ .+|+++|++++|||+||+|.++..+.+.+
T Consensus 9 ~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~i 61 (103)
T 2qpz_A 9 ALSDILEGDVLGVTVEGKELALYE---------------------------VEGEIYATDNLCTHGSARMSDGYLEGREI 61 (103)
T ss_dssp ETTSCCTTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTEE
T ss_pred EHHHcCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEECCcCCCCCCCCCCCeEeCCEE
Confidence 789999999999999999998764 47999999999999999999876555899
Q ss_pred EcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 163 YCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 163 ~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
.||||||+||+ +|+++.+|+..+|+.||+++++|.++
T Consensus 62 ~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~~~g~v~ 99 (103)
T 2qpz_A 62 ECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENLRVM 99 (103)
T ss_dssp ECTTTTCEEETTTCCEEETTCCSCCCEECEEEETTEEE
T ss_pred ECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEEECCEEE
Confidence 99999999999 99999999999999999999866543
No 13
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.89 E-value=2.8e-23 Score=154.09 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=80.9
Q ss_pred eeccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcc-cCCCC
Q psy17358 82 VKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVAN-AGDFG 160 (202)
Q Consensus 82 v~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~-~~~~~ 160 (202)
..+++|++|+.+.+.+.|++++|++ . +|+++|++++|||+||+|.++ ..+.+
T Consensus 10 ~~~~~l~~g~~~~~~~~g~~i~v~r--------------------------~-~g~~~A~~n~CpH~g~~L~~g~~~~~~ 62 (112)
T 1fqt_A 10 CDRRDVPEGEALKVESGGTSVAIFN--------------------------V-DGELFATQDRCTHGDWSLSDGGYLEGD 62 (112)
T ss_dssp EEGGGSCTTCEEEEEETTEEEEEEE--------------------------E-TTEEEEEESBCTTSSCBSSTTCCEETT
T ss_pred EeHHHCCCCCeEEEEECCEEEEEEE--------------------------E-CCEEEEEECCCCCCCcCCCCCCEEcCC
Confidence 3789999999999999999998864 2 789999999999999999876 44558
Q ss_pred EEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEEEE
Q psy17358 161 GYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 161 ~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~~i 201 (202)
.|.||||||+||+ ||+++.+|+..+|+.|++++++|. |.|
T Consensus 63 ~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~~~g~-v~v 103 (112)
T 1fqt_A 63 VVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDND-VLV 103 (112)
T ss_dssp EEECTTTCCEEETTTCCEEESSCCSCCCBCCEEEETTE-EEE
T ss_pred EEECCCCCCEEeCCCCcEeCCCCCCCccEEEEEEECCE-EEE
Confidence 9999999999999 999999999999999999997654 444
No 14
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.88 E-value=4e-23 Score=152.25 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=80.0
Q ss_pred eccCCCCCceEEEEEcCee-EEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCE
Q psy17358 83 KLADIPEGRNVTFKWRGKP-LFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGG 161 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~p-v~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~ 161 (202)
.+++|++|+.+.+.+.|.+ ++|++ . +|+++|++++|||+||+|.++..+.+.
T Consensus 9 ~~~~l~~g~~~~~~~~g~~~v~v~r--------------------------~-~g~~~A~~~~CpH~g~~L~~g~~~~~~ 61 (108)
T 2i7f_A 9 QVASVKDGEPVAVYQEKMPALAVYN--------------------------V-DGEVFVTDNLCTHGNAMLTDGYQDGTI 61 (108)
T ss_dssp EGGGCBTTBCEEECCTTSSCEEEEE--------------------------E-TTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EHhHcCCCCeEEEEECCeeEEEEEE--------------------------E-CCEEEEEeCcCCCCCCCCCCCEEeCCE
Confidence 7899999999999999999 88764 2 789999999999999999987555589
Q ss_pred EEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 162 YYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 162 ~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
+.||||||+||+ ||+++.+|+..+|+.|++++++|.++
T Consensus 62 i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~v~ 100 (108)
T 2i7f_A 62 IECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDGWVC 100 (108)
T ss_dssp EECSSTTCEEETTTCCBCSTTCCSCCCEECEEEETTEEE
T ss_pred EEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEEECCEEE
Confidence 999999999998 99999999999999999999866543
No 15
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.88 E-value=1.1e-22 Score=151.90 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=80.1
Q ss_pred eccCCCCCceEEEEEcCe-eEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCE
Q psy17358 83 KLADIPEGRNVTFKWRGK-PLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGG 161 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~-pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~ 161 (202)
.+++|++|+.+.+.+.|. +++|++ . +|+++|++++|||+||+|.++..+.+.
T Consensus 10 ~~~el~~g~~~~~~~~g~~~v~v~r--------------------------~-~g~~~A~~n~CpH~g~~L~~g~~~~~~ 62 (115)
T 2de6_D 10 AASDMQPGTIRRVNRVGAAPLAVYR--------------------------V-GDQFYATEDTCTHGIASLSEGTLDGDV 62 (115)
T ss_dssp EGGGCCTTEEEEEEETTEEEEEEEE--------------------------E-TTEEEEEESBCTTSSCBGGGSEEETTE
T ss_pred EHHHCCCCCeEEEEECCccEEEEEE--------------------------E-CCEEEEEeCCCCCCCCCCcCCEEeCCE
Confidence 789999999999999999 988764 2 789999999999999999987555589
Q ss_pred EEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 162 YYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 162 ~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
|.||||||+||+ +|+++.+|+..+|+.||+++++|.++
T Consensus 63 i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~V~ 101 (115)
T 2de6_D 63 IECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVY 101 (115)
T ss_dssp EECTTTCCEEETTTCCEEETTCCSCCCEEEEEESSSEEE
T ss_pred EECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEEECCEEE
Confidence 999999999998 99999999999999999999765543
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.88 E-value=1.8e-22 Score=149.49 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=79.6
Q ss_pred eccCCCCCceEEEEE-cCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCE
Q psy17358 83 KLADIPEGRNVTFKW-RGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGG 161 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~-~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~ 161 (202)
.+++|++|+.+.+.+ .|++++|++ ..+|+++|++++|||+||+|.++..+.+.
T Consensus 7 ~~~~l~~g~~~~~~~~~g~~v~v~r--------------------------~~~g~~~A~~~~CpH~g~~L~~g~~~~~~ 60 (111)
T 1vm9_A 7 SLDDIWVGEMETFETSDGTEVLIVN--------------------------SEEHGVKAYQAMCPHQEILLSEGSYEGGV 60 (111)
T ss_dssp EGGGSCTTCEEEEECTTCCEEEEEE--------------------------ETTTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EHHHCCCCCeEEEEEcCCCEEEEEE--------------------------eCCCeEEEEeCcCCCCCcCCCCceEcCCE
Confidence 678999999999999 899988764 34799999999999999999987655589
Q ss_pred EEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEEEE
Q psy17358 162 YYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 162 ~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~~i 201 (202)
|.||||||+||+ ||+++. |+..+|+.|++++++|. |.|
T Consensus 61 i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~~~g~-v~v 99 (111)
T 1vm9_A 61 ITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGDD-IYV 99 (111)
T ss_dssp EECTTTCCEEETTTCBBSS-SSSCBCCEECEEEETTE-EEE
T ss_pred EEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEEECCE-EEE
Confidence 999999999999 799998 99999999999997654 444
No 17
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.86 E-value=7.9e-22 Score=152.11 Aligned_cols=89 Identities=34% Similarity=0.713 Sum_probs=75.4
Q ss_pred ccCCCCCceEEEE-EcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCce--EEEeccccCCCcccCcccCCCC
Q psy17358 84 LADIPEGRNVTFK-WRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKW--LVLIGVCTHLGCVPVANAGDFG 160 (202)
Q Consensus 84 ~~~l~~g~~~~~~-~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~--~a~s~~CtHlGc~l~~~~~~~~ 160 (202)
+++|++|+.+.+. +.+.+++++++ .+|++ +|++++|||+||+|.++.. .+
T Consensus 29 ~~dlp~g~~~~~~~~~g~~~ilv~~--------------------------~~G~i~~~A~~n~CpH~g~~L~~g~~-~~ 81 (139)
T 1rfs_A 29 LKTHAPGDRTLTQGLKGDPTYLVVE--------------------------SDKTLATFGINAVCTHLGCVVPFNAA-EN 81 (139)
T ss_dssp HHHSCTTCEEEEECGGGCEEEEEBC--------------------------TTSSBCSEEEECBCTTTCCBCCEETT-TT
T ss_pred HhhCCCCccEEEEecCCCeEEEEEe--------------------------CCCcEEEEEEeCcCCCCCCCCccCCC-CC
Confidence 5779999988876 45667655432 47888 9999999999999998764 48
Q ss_pred EEEcCCCCeEECCCCccccCCCCCCCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
.|.||||||+||.+|+++.+|++++|+.|++++++|.++
T Consensus 82 ~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~~~v~v~~g~V~ 120 (139)
T 1rfs_A 82 KFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVV 120 (139)
T ss_dssp EEECTTTCCEEETTCCEEESSCCSCCCEEEEEEETTEEE
T ss_pred EEEcCCCCCEECCCCCCccCCCCCCCCEEEEEEECCEEE
Confidence 999999999999999999999999999999999866543
No 18
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.85 E-value=1.5e-22 Score=165.35 Aligned_cols=68 Identities=32% Similarity=0.658 Sum_probs=59.4
Q ss_pred CCceEEEeccccCCCcccCccc-----------CCCCEEEcCCCCeEECC-C-CccccCCCCCCCccceEEEe--CCcEE
Q psy17358 135 DPKWLVLIGVCTHLGCVPVANA-----------GDFGGYYCPCHGSHYDA-S-GRIRKGPAPLNLEVPKYEFP--EPGLL 199 (202)
Q Consensus 135 ~g~~~a~s~~CtHlGc~l~~~~-----------~~~~~~~CPcHGs~FD~-~-G~vi~GPA~~~L~~~p~~i~--~~~~~ 199 (202)
+|+++|++++|||+||+|.++. .+.+.|.||||||+||+ + |+++.|||+.+|++++++++ +|.++
T Consensus 84 ~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~~~~v~v~~~~g~v~ 163 (204)
T 1jm1_A 84 NGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDIY 163 (204)
T ss_dssp TTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEEE
T ss_pred CCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCCeEeeEEEecCCEEE
Confidence 7999999999999999998752 34589999999999999 4 59999999999999999997 66666
Q ss_pred EEC
Q psy17358 200 VVG 202 (202)
Q Consensus 200 ~ig 202 (202)
++|
T Consensus 164 v~g 166 (204)
T 1jm1_A 164 AVG 166 (204)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 19
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.85 E-value=3e-21 Score=144.81 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=77.1
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCc-ccCcccCCC--
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGC-VPVANAGDF-- 159 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc-~l~~~~~~~-- 159 (202)
.+++|++|+.+.+.+.|.+++|++ ..+|+++|++++|||+|| +|..+..+.
T Consensus 11 ~~~el~~g~~~~~~~~g~~v~v~r--------------------------~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~ 64 (119)
T 3c0d_A 11 QLDDLMPFIGATVLIEGERVALFY--------------------------IPDSGVYAVQDWDPIGKAYVMSRGIVGDIN 64 (119)
T ss_dssp EGGGSCBTCCEEEEETTEEEEEEE--------------------------ETTTEEEEEESEETTTTEECGGGSEEEESS
T ss_pred EHHHCCCCCeEEEEECCeEEEEEE--------------------------ecCCeEEEEeCCCCCCCCccCCCeEEcCCC
Confidence 789999999999999999988764 347999999999999999 688654321
Q ss_pred --CEEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 160 --GGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 160 --~~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
..|.||||||+||+ ||+++.+|+ .+|+.||+++++|.++
T Consensus 65 g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v~~g~V~ 106 (119)
T 3c0d_A 65 GEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTVDDNQVC 106 (119)
T ss_dssp SSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEESSSEEE
T ss_pred CCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEEECCEEE
Confidence 28999999999999 999999998 8999999999765543
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.83 E-value=1.2e-20 Score=140.06 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=76.9
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCC-ceEEEeccccCCCc-ccCcccCC--
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDP-KWLVLIGVCTHLGC-VPVANAGD-- 158 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g-~~~a~s~~CtHlGc-~l~~~~~~-- 158 (202)
.+++|++|+.+.+.+.|.+++|++ ..+| +++|++++|||+|| +|.++..+
T Consensus 12 ~~~el~~g~~~~~~~~g~~i~v~r--------------------------~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~ 65 (113)
T 2jo6_A 12 KIDDILPETGVCALLGDEQVAIFR--------------------------PYHSDQVFAISNIDPFFESSVLSRGLIAEH 65 (113)
T ss_dssp ETTTSCTTEEEEEEETTEEEEEEE--------------------------CSSSSCCEEEESSCSSSCCSCSTTSEEEEE
T ss_pred eHHHCCCCCeEEEEECCEEEEEEE--------------------------ECCCCEEEEEeCcCCCCCCcccCCeEEecc
Confidence 789999999999999999998764 2478 59999999999999 79875432
Q ss_pred -CC-EEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 159 -FG-GYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 159 -~~-~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
+. .+.||||||+||+ ||+++.+|+ .+|+.||+++++|.++
T Consensus 66 ~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~v~~g~V~ 108 (113)
T 2jo6_A 66 QGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEARVKDGVVQ 108 (113)
T ss_dssp TTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEEEETTEEE
T ss_pred CCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEEEECCEEE
Confidence 12 7999999999999 999999998 8999999999866543
No 21
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2.4e-20 Score=140.15 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred eccCCCCCceEEEEE-cCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccC----
Q psy17358 83 KLADIPEGRNVTFKW-RGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAG---- 157 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~-~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~---- 157 (202)
.+++|++|+.+.+.. .|.+|.|.+ ..+|+++|+++.|||+|++|..+..
T Consensus 15 ~~~dL~~g~~~~~~~~~G~~v~l~r--------------------------~~dG~v~A~~n~CpH~ga~L~~~~~~~~~ 68 (119)
T 4aiv_A 15 AYDHLIPGRGVGVLLDDGSQVALFR--------------------------LDDGSVHAVGNVDPFSGAAVMSRGIVGDR 68 (119)
T ss_dssp EGGGSCTTCCEEEECTTSCEEEEEE--------------------------CTTSCEEEEESBCTTTCCBCGGGSEEEEE
T ss_pred EHHHcCCCCceEEEEcCCcEEEEEE--------------------------cCCCeEEEEECCCCCCCCccccCceeccc
Confidence 789999999888877 478887764 3579999999999999999876531
Q ss_pred -CCCEEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEEEEC
Q psy17358 158 -DFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202 (202)
Q Consensus 158 -~~~~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~~ig 202 (202)
+...+.||+|||+||+ ||+++.+|+ .+|+.||++++.++.|.|+
T Consensus 69 ~~~~~i~CP~Hg~~Fdl~tG~~~~~p~-~~l~~ypv~ve~dG~V~V~ 114 (119)
T 4aiv_A 69 GGRAMVQSPILKQAFALDDGSCLDDPR-VSVPVYPARVTPEGRIQVA 114 (119)
T ss_dssp TTEEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEECTTSEEEEE
T ss_pred cCCCEEECCCCCCEEeCCCCcCcCCCC-CccceEEEEEEeCCEEEEe
Confidence 1246899999999998 999999997 6899999999877777763
No 22
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.81 E-value=6.6e-20 Score=139.57 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=76.2
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCC-ceEEEeccccCCCcc-cCcccC---
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDP-KWLVLIGVCTHLGCV-PVANAG--- 157 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g-~~~a~s~~CtHlGc~-l~~~~~--- 157 (202)
.+++|++|+.+.+.+.|.+++|++ ..+| +++|++++|||+||. |..+..
T Consensus 9 ~~~el~~g~~~~~~~~g~~i~v~r--------------------------~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~ 62 (130)
T 2jza_A 9 KLDDILPGTGVCALVEQQQIAVFR--------------------------PRNDEQVYAISNIDPFAQASVLSRGIVAEH 62 (130)
T ss_dssp ETTTSCTTBCCEEEETTEEEEEEB--------------------------CSSSSCCEEEBCCCTTTSSGGGTSSEEEES
T ss_pred EHHHCCCCCeEEEEECCcEEEEEE--------------------------ECCCCEEEEEeCcCCCCCCCcCCCccCccc
Confidence 789999999999999999988764 2356 899999999999995 876542
Q ss_pred CC-CEEEcCCCCeEECC-CCccccCCCCCCCccceEEEeCCcEE
Q psy17358 158 DF-GGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 158 ~~-~~~~CPcHGs~FD~-~G~vi~GPA~~~L~~~p~~i~~~~~~ 199 (202)
++ ..+.||||||+||+ ||+++.+|+ .+|+.||+++++|.++
T Consensus 63 ~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v~~g~V~ 105 (130)
T 2jza_A 63 QDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQVTNGNVQ 105 (130)
T ss_dssp SSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEESSSEEE
T ss_pred CCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEEECCEEE
Confidence 22 38999999999999 999999998 8999999999765543
No 23
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=8.6e-21 Score=145.25 Aligned_cols=64 Identities=44% Similarity=0.834 Sum_probs=57.3
Q ss_pred cCCc--eEEEeccccCCCcccCcccCCCCEEEcCCCCeEECCCCccccCCCCCCCccceEEE-eCCcE
Q psy17358 134 KDPK--WLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEF-PEPGL 198 (202)
Q Consensus 134 ~~g~--~~a~s~~CtHlGc~l~~~~~~~~~~~CPcHGs~FD~~G~vi~GPA~~~L~~~p~~i-~~~~~ 198 (202)
.+|+ ++|++++|||+||+|.++.. .+.|.||||||+||.+|+++.+|+..+|+.||+++ +++.+
T Consensus 48 ~~G~~~v~A~~n~CpH~g~~L~~g~~-~~~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~ypv~v~~~g~V 114 (133)
T 3azc_A 48 EDHQIANYGLNAVCTHLGCVVPWNVS-ENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKL 114 (133)
Confidence 3677 99999999999999998763 47899999999999999999999999999999999 66544
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.74 E-value=8.4e-19 Score=137.38 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=73.6
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCC---
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDF--- 159 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~--- 159 (202)
.+++|++|+.+.+.+.|.+++|++ .+|+++|++++|||+||+|.++..+.
T Consensus 22 ~~~el~~g~~~~~~~~g~~i~v~r---------------------------~~G~v~A~~n~CpH~g~~L~~G~~~~~~g 74 (157)
T 3d89_A 22 REEDIRKSERMTAVVHDREVVIFY---------------------------HKGEYHAMDIRCYHSGGPLHLGEIEDFNG 74 (157)
T ss_dssp EHHHHHHHSEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCTTTCCBGGGSEEEEETT
T ss_pred EHHHCCCCCeEEEEECCEEEEEEE---------------------------ECCEEEEEeCCCCCCCCCCcCCEecCcCC
Confidence 678888898999999999988764 37899999999999999999865331
Q ss_pred -CEEEcCCCCeEECC-CCcccc---CC----CC-------CCCccceEEEeCCcEE
Q psy17358 160 -GGYYCPCHGSHYDA-SGRIRK---GP----AP-------LNLEVPKYEFPEPGLL 199 (202)
Q Consensus 160 -~~~~CPcHGs~FD~-~G~vi~---GP----A~-------~~L~~~p~~i~~~~~~ 199 (202)
+.|.||||||+||+ +|+++. +| +. .+|+.|++++++|.++
T Consensus 75 ~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~ 130 (157)
T 3d89_A 75 QSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIY 130 (157)
T ss_dssp EEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEE
T ss_pred CCEEECCCCCCEEecCCcCEEEeccCCCccccccccccccCcceEEEEEEECCEEE
Confidence 58999999999999 999885 24 21 5799999999866543
No 25
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.68 E-value=6.9e-17 Score=141.35 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=78.9
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCCCCEE
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGY 162 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~ 162 (202)
..++| +|+.+.+.+.|.+++|.+ ..+|+++|+.++|||.||+|+++..+.+.+
T Consensus 14 ~~~el-~g~~~~~~~~g~~vvv~R--------------------------~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i 66 (349)
T 3gke_A 14 LPEEL-SEKPLGRTILDTPLALYR--------------------------QPDGVVAALLDICPHRFAPLSDGILVNGHL 66 (349)
T ss_dssp CGGGC-CSSCEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCGGGCEEETTEE
T ss_pred EHHHC-CCCeEEEEECCEEEEEEE--------------------------cCCCcEEEEeCcCCCCCcCCccCCccceEE
Confidence 67888 899999999999998764 358999999999999999999877666899
Q ss_pred EcCCCCeEECCCCccccCCC-------CCCCccceEEEeCCcEEEE
Q psy17358 163 YCPCHGSHYDASGRIRKGPA-------PLNLEVPKYEFPEPGLLVV 201 (202)
Q Consensus 163 ~CPcHGs~FD~~G~vi~GPA-------~~~L~~~p~~i~~~~~~~i 201 (202)
.||||||+||.+|+++.+|. ...|..||+++.+| .|.|
T Consensus 67 ~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~l~~~~v~~~~G-~V~v 111 (349)
T 3gke_A 67 QCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDA-LIWI 111 (349)
T ss_dssp ECTTTCCEECTTCCEEECCSTTCCCCGGGCCCBCCEEEETT-EEEE
T ss_pred EECCCCCEEcCCCCccccCccccccccccccceeeEEEECC-EEEE
Confidence 99999999999999999983 46899999998765 4443
No 26
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.68 E-value=8.8e-17 Score=142.45 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=82.1
Q ss_pred hhccccee-eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccC
Q psy17358 75 LAMAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPV 153 (202)
Q Consensus 75 ~~~~~~~v-~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~ 153 (202)
|......+ ..++|++|+.+.+.+.|.+++|.+ ..+|+++|+.++|||+|++|+
T Consensus 22 f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R--------------------------~~~G~v~a~~n~CpHrga~L~ 75 (386)
T 2zyl_A 22 YARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFA--------------------------DSHGDLKVLDGYCRHMGGDLS 75 (386)
T ss_dssp CCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEE--------------------------CTTSCEEEEESBCTTTCCBGG
T ss_pred hhcceEEEEEHHHCCCCCeEEEEECCeEEEEEE--------------------------CCCCCEEEEcCcCCCCCCCCC
Confidence 33334444 678899999999999999998764 358999999999999999999
Q ss_pred cccCCCCEEEcCCCCeEECCCCccccCCCC------CCCccceEEEeCCcE
Q psy17358 154 ANAGDFGGYYCPCHGSHYDASGRIRKGPAP------LNLEVPKYEFPEPGL 198 (202)
Q Consensus 154 ~~~~~~~~~~CPcHGs~FD~~G~vi~GPA~------~~L~~~p~~i~~~~~ 198 (202)
.+..+.+.+.||||||+||.+|+++.+|+. ..|..||+++.+|.+
T Consensus 76 ~g~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v~~~~G~v 126 (386)
T 2zyl_A 76 EGTVKGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLL 126 (386)
T ss_dssp GSEEETTEEECTTTCCEEETTSBEEECTTCSSCCTTCBCCEECEEEETTEE
T ss_pred CCcccCCEEEeCCCCCEECCCCCccccCcccccCcccCcceEeEEEECCEE
Confidence 876656899999999999999999999863 579999999976644
No 27
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.66 E-value=3.1e-16 Score=138.63 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=78.6
Q ss_pred cee-eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCccc--
Q psy17358 80 IEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA-- 156 (202)
Q Consensus 80 ~~v-~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~-- 156 (202)
..+ ..++|++|+.+.+.+.|.+++|.+ .+|+++|++++|||.||+|+++.
T Consensus 33 ~~V~~~~ELp~G~~~~v~i~G~~VvV~R---------------------------~dG~v~A~~N~CpHRGa~Ls~G~~~ 85 (389)
T 3gkq_A 33 YPVRLSAEVAEASPVPVQLLGEKVLLNR---------------------------VDGVVHAIADRCLHRGVTLSDKVEC 85 (389)
T ss_dssp EEEEEGGGSCBTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGGCCC
T ss_pred EEEEEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCeEEEeCCcCCCCCCCccCCccc
Confidence 344 778999999999999999987753 47999999999999999999875
Q ss_pred CCCCEEEcCCCCeEECC-CCccccCCC--------CCCCccceEEEeCCcE
Q psy17358 157 GDFGGYYCPCHGSHYDA-SGRIRKGPA--------PLNLEVPKYEFPEPGL 198 (202)
Q Consensus 157 ~~~~~~~CPcHGs~FD~-~G~vi~GPA--------~~~L~~~p~~i~~~~~ 198 (202)
.+.+.+.||||||+||+ +|+++.+|+ ..+|..||+++.+|.+
T Consensus 86 ~~~~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~V 136 (389)
T 3gkq_A 86 YSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLV 136 (389)
T ss_dssp SBTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEE
T ss_pred CcCCEEECCCCCCEEECCCCCeecccCCcccccccccCCcEEEEEEECCeE
Confidence 35589999999999999 999998653 4689999999976654
No 28
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.65 E-value=3.4e-16 Score=138.66 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=79.0
Q ss_pred cee-eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCccc--
Q psy17358 80 IEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA-- 156 (202)
Q Consensus 80 ~~v-~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~-- 156 (202)
..+ ..++|++|+.+.+.+.|.+++|.+ .+|+++|+.++|||.||+|+++.
T Consensus 36 ~~V~~~~ELp~G~~~~v~i~G~~VvV~R---------------------------~dG~v~A~~N~CpHRGa~Ls~G~~~ 88 (394)
T 3gcf_A 36 HPAAFDHELAEGEFVAVTMLGEKVLLTR---------------------------AKGEVKAIADGCAHRGVPFSKEPLC 88 (394)
T ss_dssp EEEEEGGGCCBTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGSCBC
T ss_pred EEEEEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCeEEEeeCcCCCCCCCCcCCccc
Confidence 344 778999999999999999998753 48999999999999999999875
Q ss_pred CCCCEEEcCCCCeEECC-CCccccCCC--------CCCCccceEEEeCCcEE
Q psy17358 157 GDFGGYYCPCHGSHYDA-SGRIRKGPA--------PLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 157 ~~~~~~~CPcHGs~FD~-~G~vi~GPA--------~~~L~~~p~~i~~~~~~ 199 (202)
.+.+.+.||||||+||+ +|+++.+|+ ..+|..||+++.+|.++
T Consensus 89 ~~~~~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~Vf 140 (394)
T 3gcf_A 89 FKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVF 140 (394)
T ss_dssp SSTTEEECTTTCEEEETTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEE
T ss_pred CcCCEEECCCCCcEEECCCCceeccCCCcccccccccCceEEEEEEECCcEE
Confidence 34589999999999999 999998763 46799999999766543
No 29
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.64 E-value=5.9e-16 Score=138.29 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=77.1
Q ss_pred eccCCC-CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCc-ccCCCC
Q psy17358 83 KLADIP-EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVA-NAGDFG 160 (202)
Q Consensus 83 ~~~~l~-~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~-~~~~~~ 160 (202)
..++|+ +|+.+.+.+.|.+++|++ ..+|+++|+.++|||.|++|.+ +.++.+
T Consensus 49 ~~~elp~~G~~~~~~i~g~~vvv~R--------------------------~~dG~v~A~~n~CpHrga~L~~~g~~~~~ 102 (412)
T 3vca_A 49 PVCQLAKAGSYTTLRVGAYEVVIVR--------------------------SRDGEVRAFHNSCRHRGSLICKARQGQVA 102 (412)
T ss_dssp EGGGGCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCEEEEEEE--------------------------cCCCCEEEecccCCCCCCEeecccccCCC
Confidence 678998 589999999999998764 3589999999999999999983 445557
Q ss_pred EEEcCCCCeEECCCCccccCCCC--------CCCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAP--------LNLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~--------~~L~~~p~~i~~~~~~ 199 (202)
.+.||+|||+||.+|+++.+|+. .+|..|++++.+|.++
T Consensus 103 ~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~ 149 (412)
T 3vca_A 103 KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIY 149 (412)
T ss_dssp SEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEE
T ss_pred EEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEE
Confidence 89999999999999999999863 4799999999765443
No 30
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.63 E-value=9.8e-16 Score=136.77 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred eccCCC-CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCc-ccCCCC
Q psy17358 83 KLADIP-EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVA-NAGDFG 160 (202)
Q Consensus 83 ~~~~l~-~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~-~~~~~~ 160 (202)
..++|+ +|+.+.+.+.|.+++|++ ..+|+++|+.++|||.|++|.+ +.++.+
T Consensus 47 ~~~elp~~G~~~~~~i~g~~vvv~R--------------------------~~dG~v~A~~n~C~Hrga~L~~~g~~~~~ 100 (409)
T 3n0q_A 47 PACELDKPGSYVTHQVGNYNVIIVR--------------------------GADNVIRAFHNACRHRGSVICKAKKGNNP 100 (409)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCEEEEEEE--------------------------cCCCCEEeecCcCCcCcCCccCcCccCCC
Confidence 678997 599999999999998764 3589999999999999999986 445557
Q ss_pred EEEcCCCCeEECCCCccccCCC--------CCCCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPA--------PLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA--------~~~L~~~p~~i~~~~~~ 199 (202)
.+.||+|||+||.+|+++.+|+ ..+|..+++++.+|-++
T Consensus 101 ~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vf 147 (409)
T 3n0q_A 101 KLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIY 147 (409)
T ss_dssp SEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEE
T ss_pred EEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEE
Confidence 8999999999999999999985 35899999999765443
No 31
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.62 E-value=1.3e-15 Score=137.29 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=75.8
Q ss_pred eccCCC-CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccC-CCC
Q psy17358 83 KLADIP-EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAG-DFG 160 (202)
Q Consensus 83 ~~~~l~-~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~-~~~ 160 (202)
..++|+ +|..+++.+.+.+|+|++ ..+|+++|+.++|||.|++|.++.. +.+
T Consensus 43 ~~~el~~~g~~~~~~~~~~~vvv~R--------------------------~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 96 (454)
T 2gbw_A 43 HESLVPKPGDFITTYMAEDKVILSH--------------------------QSDGTFRAFINSCSHRGNQICHADSGNAK 96 (454)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCSCCCSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeEEEEEE--------------------------cCCCCEEEEeccCCCCCCCCcccccCCcC
Confidence 678998 588888889999987764 3589999999999999999988643 447
Q ss_pred EEEcCCCCeEECCCCccccCCCCC------------CCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAPL------------NLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~~------------~L~~~p~~i~~~~~~ 199 (202)
.|.||||||+||.+|+++.+|+.. .|..+++++.+|-++
T Consensus 97 ~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~ 147 (454)
T 2gbw_A 97 AFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIF 147 (454)
T ss_dssp EEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEE
T ss_pred EEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEE
Confidence 899999999999999999998643 478889988765443
No 32
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.60 E-value=1.8e-15 Score=136.09 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=76.2
Q ss_pred eccCCC-CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccC-CCC
Q psy17358 83 KLADIP-EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAG-DFG 160 (202)
Q Consensus 83 ~~~~l~-~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~-~~~ 160 (202)
..++|+ +|..+++.+.+.+|+|++ ..+|+++|+.++|||.|++|.++.. +.+
T Consensus 42 ~~~el~~~g~~~~~~~~~~~vvv~R--------------------------~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 95 (447)
T 2bmo_A 42 HDSLIPSPGDYVKAKMGVDEVIVSR--------------------------QNDGSVRAFLNVCRHRGKTLVHAEAGNAK 95 (447)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESBCTTTCCBCCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeeEEEEE--------------------------CCCCCEEEEeccCcCCCCCccccccCCcC
Confidence 678898 588889989999987764 3589999999999999999987643 347
Q ss_pred EEEcCCCCeEECCCCccccCCCC------------CCCccce-EEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAP------------LNLEVPK-YEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~------------~~L~~~p-~~i~~~~~~ 199 (202)
.|.||+|||+||.+|+++.+|+. ..|..+| +++.+|-++
T Consensus 96 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~ 147 (447)
T 2bmo_A 96 GFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIY 147 (447)
T ss_dssp EEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEE
T ss_pred eEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEE
Confidence 89999999999999999999863 3789998 998765443
No 33
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.60 E-value=2.9e-15 Score=132.71 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=76.6
Q ss_pred eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccC--CCC
Q psy17358 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAG--DFG 160 (202)
Q Consensus 83 ~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~--~~~ 160 (202)
..++|++|+.+.+.+.|.+++|.+ .+|+++|+.++|||.|++|+++.. +.+
T Consensus 34 ~~~el~~g~~~~~~~~g~~vvl~R---------------------------~~G~v~a~~n~CpHrga~L~~g~~~~~~~ 86 (392)
T 2de6_A 34 FSKEINEGEPKTLKLLGENLLVNR---------------------------IDGKLYCLKDRCLHRGVQLSVKVECKTKS 86 (392)
T ss_dssp EGGGSCBTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGGCCCCSTT
T ss_pred EHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCEEEEEeCcCCCCCCCCcCCcccCCCC
Confidence 678999999999999999987753 379999999999999999998753 458
Q ss_pred EEEcCCCCeEECC-CCccccCCC--------CCCCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDA-SGRIRKGPA--------PLNLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~-~G~vi~GPA--------~~~L~~~p~~i~~~~~~ 199 (202)
.+.||||||+||. +|+++.+|. ...|..||+++.+|.++
T Consensus 87 ~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~ 134 (392)
T 2de6_A 87 TITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVF 134 (392)
T ss_dssp EEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEE
T ss_pred EEEeCCCCCEEcCCCCccccccCCccccccccCCCceEeEEEECCEEE
Confidence 9999999999998 999998753 35899999999766543
No 34
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.60 E-value=2.6e-15 Score=135.21 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred ccee-eccCCCCCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCccc-
Q psy17358 79 KIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA- 156 (202)
Q Consensus 79 ~~~v-~~~~l~~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~- 156 (202)
...+ ..++|++|+.+.+.+.|.+++|.+ .+|+++|+.++|||.||+|+++.
T Consensus 44 W~~v~~~~el~~g~~~~~~~~g~~vvl~r---------------------------~~G~v~a~~n~CpHrga~L~~g~~ 96 (446)
T 1z01_A 44 WYPALFTHELEEDQVQGIQICGVPIVLRR---------------------------VNGKVFALKDQCLHRGVRLSEKPT 96 (446)
T ss_dssp EEEEEEGGGSCBTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGSCC
T ss_pred eEEEEEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCEEEEEeCcCCCCcCCCCCCcc
Confidence 3444 678899999999999999987753 47999999999999999999875
Q ss_pred -CCCCEEEcCCCCeEECC-CCccccCCC--------CCCCccceEEEeCCcE
Q psy17358 157 -GDFGGYYCPCHGSHYDA-SGRIRKGPA--------PLNLEVPKYEFPEPGL 198 (202)
Q Consensus 157 -~~~~~~~CPcHGs~FD~-~G~vi~GPA--------~~~L~~~p~~i~~~~~ 198 (202)
++.+.+.||||||+||+ +|+++.+|+ ..+|..||+++.+|.+
T Consensus 97 ~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V 148 (446)
T 1z01_A 97 CFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMI 148 (446)
T ss_dssp CSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEE
T ss_pred CCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEE
Confidence 35589999999999998 999998754 3579999999876644
No 35
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.59 E-value=2.6e-15 Score=135.70 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=74.4
Q ss_pred eccCCCC-CceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccC-CCC
Q psy17358 83 KLADIPE-GRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAG-DFG 160 (202)
Q Consensus 83 ~~~~l~~-g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~-~~~ 160 (202)
..++|++ |..+++.+.+.+|+|++ ..+|+++|+.++|||.||+|.++.. +.+
T Consensus 61 ~~~el~~~g~~~~~~i~~~~vvv~R--------------------------~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 114 (460)
T 1uli_A 61 HETQIPKAGDFMTNYMGEDPVMVVR--------------------------QKNGEIRVFLNQCRHRGMRICRADGGNAK 114 (460)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeEEEEEE--------------------------cCCCCEEEEeeeCCCCCCCCccccCCCCC
Confidence 6788985 77788888888887764 3589999999999999999987643 346
Q ss_pred EEEcCCCCeEECCCCccccCCCC-----------CCCccceEEEeCCcEE
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAP-----------LNLEVPKYEFPEPGLL 199 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~-----------~~L~~~p~~i~~~~~~ 199 (202)
.|.||||||+||.+|+++.+|+. ..|..+++++.+|-++
T Consensus 115 ~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~ 164 (460)
T 1uli_A 115 SFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIF 164 (460)
T ss_dssp CEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEE
T ss_pred EEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEE
Confidence 89999999999999999999863 3478889998765443
No 36
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.58 E-value=5.2e-15 Score=134.03 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=64.3
Q ss_pred eccCCCC-CceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCcccCC-CC
Q psy17358 83 KLADIPE-GRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGD-FG 160 (202)
Q Consensus 83 ~~~~l~~-g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~~~-~~ 160 (202)
..++|++ |..+++.+.+.+|+|++ ..+|+++|+.++|||.|++|.++... .+
T Consensus 51 ~~~el~~~g~~~~~~~~g~~vvv~R--------------------------~~~G~v~a~~n~C~Hrga~L~~g~~~~~~ 104 (470)
T 2b1x_A 51 HESEIPERGDYVVRYISEDQFIVCR--------------------------DEGGEIRGHLNACRHRGMQVCRAEMGNTS 104 (470)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCSCCSSEEECS
T ss_pred eHHHCCCCCCeEEEEECCeEEEEEE--------------------------cCCCCEEEEecccCCCCCEeeccCcCCCC
Confidence 6788985 77788889999987764 35899999999999999999886532 36
Q ss_pred EEEcCCCCeEECCCCccccCCCC
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPAP 183 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA~ 183 (202)
.|.||||||+||.+|+++.+|+.
T Consensus 105 ~i~CpyHgw~f~~~G~~~~~P~~ 127 (470)
T 2b1x_A 105 HFRCPYHGWTYSNTGSLVGVPAG 127 (470)
T ss_dssp EEECTTTCCEEETTSCEEECTTT
T ss_pred EEEECCCCCeecCCCceeecCcc
Confidence 89999999999999999999974
No 37
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.48 E-value=8.1e-14 Score=125.96 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=64.3
Q ss_pred eccCCC-CCceEEEEEcCeeEEEEeCCHHHHHhhhhchhcccCCCccccccccCCceEEEeccccCCCcccCccc-CCCC
Q psy17358 83 KLADIP-EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA-GDFG 160 (202)
Q Consensus 83 ~~~~l~-~g~~~~~~~~g~pv~i~~~~~~~i~~~~~v~~~~l~dp~~~~~r~~~g~~~a~s~~CtHlGc~l~~~~-~~~~ 160 (202)
..++|+ +|+.+.+.+.+.+|+|++ ..+|+++|+.++|||.|++|..+. ++.+
T Consensus 63 ~~~elp~~G~~~~~~i~~~~vvv~R--------------------------~~dG~v~A~~n~C~Hrga~L~~g~~g~~~ 116 (457)
T 3gzx_A 63 HETHIPKIGDYLTTYMGEDPVIMVR--------------------------QKDQSIKVFLNQCRHRGMRIVRSDGGNAK 116 (457)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHcCCCCCeEEEEECCEEEEEEE--------------------------CCCCeEEEEeCcCCCCCcCccCCCCCcCC
Confidence 678897 588899989899988764 358999999999999999998764 4457
Q ss_pred EEEcCCCCeEECCCCccccCCC
Q psy17358 161 GYYCPCHGSHYDASGRIRKGPA 182 (202)
Q Consensus 161 ~~~CPcHGs~FD~~G~vi~GPA 182 (202)
.|.||+|||+||.+|+++..|+
T Consensus 117 ~i~CpyHgw~fd~~G~~~~~P~ 138 (457)
T 3gzx_A 117 AFTCTYHGWAYDIAGNLVNVPF 138 (457)
T ss_dssp EEECTTTCCEEETTSCEEECTT
T ss_pred EEEcCCCCCEecCCCcceecCc
Confidence 9999999999999999999886
No 38
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=93.40 E-value=0.15 Score=31.58 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=13.4
Q ss_pred cCCccchhHHHHHHHHH
Q psy17358 33 ETEEARKAFSYVVAAGT 49 (202)
Q Consensus 33 ~~~~~RR~fl~i~tG~~ 49 (202)
...++||+||..++...
T Consensus 6 ~pdm~RRqfln~l~~G~ 22 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGG 22 (49)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 35689999999888644
No 39
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=85.19 E-value=0.74 Score=26.36 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.3
Q ss_pred CccchhHHHHHH
Q psy17358 35 EEARKAFSYVVA 46 (202)
Q Consensus 35 ~~~RR~fl~i~t 46 (202)
.++||+||+...
T Consensus 2 ~lsRR~FLK~~a 13 (35)
T 2pq4_B 2 KLSRRSFMKANA 13 (35)
T ss_dssp CCCSHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 478999999543
No 40
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=32.05 E-value=9.7 Score=32.35 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHHHHHHHH
Q psy17358 34 TEEARKAFSYVVAAGTAIGG 53 (202)
Q Consensus 34 ~~~~RR~fl~i~tG~~~~~g 53 (202)
..++||+||+.+++.++..|
T Consensus 19 ~~~sRr~F~k~~~~~~a~~~ 38 (317)
T 1h2a_S 19 RGVSRRDFLKFCTAIAVTMG 38 (317)
T ss_dssp --------------------
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 47899999998887665444
No 41
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.57 E-value=49 Score=20.43 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=20.3
Q ss_pred CEEEcCCCCeEECC-CCccccC-CCCCCCc
Q psy17358 160 GGYYCPCHGSHYDA-SGRIRKG-PAPLNLE 187 (202)
Q Consensus 160 ~~~~CPcHGs~FD~-~G~vi~G-PA~~~L~ 187 (202)
+.|.|+-=|..||. .|....| |+..+.+
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe 31 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFK 31 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGG
T ss_pred CceECCCCCeEECCCcCCcccCcCCCCChh
Confidence 35899988999998 8887777 4333333
No 42
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.51 E-value=37 Score=20.56 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=24.9
Q ss_pred cccCCceEEEeccccCCCcccCcccCCCCEEEcC-CCCeEEC
Q psy17358 132 RVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCP-CHGSHYD 172 (202)
Q Consensus 132 r~~~g~~~a~s~~CtHlGc~l~~~~~~~~~~~CP-cHGs~FD 172 (202)
+..+|.+.....-||.=|-.+-.... .+.+.|+ |+-..|+
T Consensus 9 ~v~~~kv~~~~k~CP~CG~~~fm~~~-~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 9 EIKDGKVIRKNKFCPRCGPGVFMADH-GDRWACGKCGYTEWK 49 (50)
T ss_dssp EECSSCEECSSEECSSSCSSCEEEEC-SSEEECSSSCCEEEC
T ss_pred EEECCEEEEecccCCCCCCceEEecC-CCeEECCCCCCEEEC
Confidence 33456677777789974443333223 3799998 6666664
No 43
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=29.29 E-value=11 Score=31.87 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHH
Q psy17358 35 EEARKAFSYVVAAGTAIGG 53 (202)
Q Consensus 35 ~~~RR~fl~i~tG~~~~~g 53 (202)
.++||+||+.+++.++..|
T Consensus 2 ~~srr~f~k~~~~~~a~~~ 20 (317)
T 2wpn_A 2 SLTRRDFVKLCTGTVAGFG 20 (317)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 4799999999887665444
No 44
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.05 E-value=22 Score=25.22 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=21.7
Q ss_pred CCceEEEec-ccc---CCCcccCcccCCCCEEEcCCCC
Q psy17358 135 DPKWLVLIG-VCT---HLGCVPVANAGDFGGYYCPCHG 168 (202)
Q Consensus 135 ~g~~~a~s~-~Ct---HlGc~l~~~~~~~~~~~CPcHG 168 (202)
.|+++.-.+ .|+ |+.|.-....-+ +.|+||.|-
T Consensus 24 ~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~-g~W~Cp~c~ 60 (107)
T 4gne_A 24 GGELVMCDKKDCPKAYHLLCLNLTQPPY-GKWECPWHQ 60 (107)
T ss_dssp CSEEEECCSTTCCCEECTGGGTCSSCCS-SCCCCGGGB
T ss_pred CCcEeEECCCCCCcccccccCcCCcCCC-CCEECCCCC
Confidence 567777665 677 999964222223 789999773
No 45
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.97 E-value=18 Score=23.69 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=7.1
Q ss_pred CccccccCC
Q psy17358 2 NQVRFAHTD 10 (202)
Q Consensus 2 ~~~~~~~~~ 10 (202)
++|.|||..
T Consensus 35 ~~C~FAHG~ 43 (69)
T 2d9m_A 35 NSCKFAHGN 43 (69)
T ss_dssp SSCSSBSSH
T ss_pred CccCCcCCH
Confidence 688999974
No 46
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0
Probab=25.14 E-value=19 Score=27.44 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.1
Q ss_pred CCCCeEECC-CCccc
Q psy17358 165 PCHGSHYDA-SGRIR 178 (202)
Q Consensus 165 PcHGs~FD~-~G~vi 178 (202)
+-||+.||. ||++.
T Consensus 149 ~V~G~vydi~tG~l~ 163 (166)
T 3las_A 149 IISGAIYDVDTGRVR 163 (166)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred EEEEEEEECCCcEEE
Confidence 589999999 99874
No 47
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.26 E-value=76 Score=19.30 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=17.0
Q ss_pred EEEcCCCCeEECC-CCccccC
Q psy17358 161 GYYCPCHGSHYDA-SGRIRKG 180 (202)
Q Consensus 161 ~~~CPcHGs~FD~-~G~vi~G 180 (202)
.|.|.-=|..||. .|....|
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~g 22 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNG 22 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGT
T ss_pred cEEeCCCCeEECCCcCCcccC
Confidence 6889988999998 7887776
No 48
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=23.19 E-value=22 Score=28.47 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.6
Q ss_pred cCCCCeEECC-CCcccc
Q psy17358 164 CPCHGSHYDA-SGRIRK 179 (202)
Q Consensus 164 CPcHGs~FD~-~G~vi~ 179 (202)
..-|||.||+ ||++..
T Consensus 177 l~vhG~~Ydi~tG~v~~ 193 (223)
T 3qy1_A 177 VTIHGWAYSINDGLLRD 193 (223)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 5789999999 998764
No 49
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Probab=22.16 E-value=24 Score=26.79 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.3
Q ss_pred EcCCCCeEECC-CCccc
Q psy17358 163 YCPCHGSHYDA-SGRIR 178 (202)
Q Consensus 163 ~CPcHGs~FD~-~G~vi 178 (202)
..+-||+.||. ||++.
T Consensus 148 ~l~v~G~~ydi~tG~v~ 164 (170)
T 1g5c_A 148 SIGVHGLIIDINTGRLK 164 (170)
T ss_dssp TSEEEEEEECTTTCCEE
T ss_pred CCEEEEEEEECCCCeEE
Confidence 46789999999 99863
No 50
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis}
Probab=22.00 E-value=24 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.8
Q ss_pred cCCCCeEECC-CCccc
Q psy17358 164 CPCHGSHYDA-SGRIR 178 (202)
Q Consensus 164 CPcHGs~FD~-~G~vi 178 (202)
-.-||+.||. ||++.
T Consensus 153 l~v~G~~ydi~tG~v~ 168 (172)
T 1ylk_A 153 TSLRGFVFDVATGKLN 168 (172)
T ss_dssp SEEEEEEECTTTCCEE
T ss_pred CEEEEEEEECCCCeEE
Confidence 5789999999 99874
No 51
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.99 E-value=21 Score=25.74 Aligned_cols=17 Identities=41% Similarity=0.852 Sum_probs=11.6
Q ss_pred EcCCCCeEECCCCccccC
Q psy17358 163 YCPCHGSHYDASGRIRKG 180 (202)
Q Consensus 163 ~CPcHGs~FD~~G~vi~G 180 (202)
.||+||... ..|+.+.|
T Consensus 20 ~cPf~G~~~-vrgr~l~G 36 (113)
T 3j20_R 20 KCPWHGNLK-IHGRVFEG 36 (113)
T ss_dssp SSTTSSSCC-CCSCEEEE
T ss_pred CCCCcceee-EeeEEEEE
Confidence 699999643 46666655
No 52
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.62 E-value=85 Score=19.29 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.5
Q ss_pred CEEEcCCCCeEECC-CCccccC
Q psy17358 160 GGYYCPCHGSHYDA-SGRIRKG 180 (202)
Q Consensus 160 ~~~~CPcHGs~FD~-~G~vi~G 180 (202)
+.|.|+-=|..||. .|....|
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~g 23 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEG 23 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTT
T ss_pred CcEEeCCCCeEECCCcCCcccC
Confidence 46899989999998 8877766
No 53
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=21.44 E-value=41 Score=29.03 Aligned_cols=34 Identities=47% Similarity=0.545 Sum_probs=24.5
Q ss_pred CCcccCcccCCCCEEEcCCCCeEECCCCccccCC
Q psy17358 148 LGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGP 181 (202)
Q Consensus 148 lGc~l~~~~~~~~~~~CPcHGs~FD~~G~vi~GP 181 (202)
+|-.++-|-++...++-|.|||--|..|+-+..|
T Consensus 273 lGl~pSanig~~~a~fEpvHGSAPdIaGk~iANP 306 (366)
T 3ty4_A 273 LGLVPSANVGDNFVMSEPVHGSAPDIAGRGIANP 306 (366)
T ss_dssp GGGCCCEEECSSCEEECCSSCCCTTTTTSSCCCC
T ss_pred hhhhcceeeCCCceEEecCCCChhhcCCCCccCc
Confidence 3334444444445788899999999999888777
No 54
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.20 E-value=67 Score=19.53 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=16.9
Q ss_pred CEEEcCCCCeEECC-CCccccC
Q psy17358 160 GGYYCPCHGSHYDA-SGRIRKG 180 (202)
Q Consensus 160 ~~~~CPcHGs~FD~-~G~vi~G 180 (202)
+.|.|+-=|..||. .|....|
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~g 23 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSG 23 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTT
T ss_pred CcEEeCCCCeEEcCCcCCcccC
Confidence 35889988999998 7877666
No 55
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Probab=21.12 E-value=26 Score=28.27 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.0
Q ss_pred cCCCCeEECC-CCcccc
Q psy17358 164 CPCHGSHYDA-SGRIRK 179 (202)
Q Consensus 164 CPcHGs~FD~-~G~vi~ 179 (202)
.--|||.||. +|++..
T Consensus 174 l~IhG~~Ydi~tG~v~~ 190 (229)
T 3e3i_A 174 LSLHGWVYDVNDGFLVD 190 (229)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 4579999999 998753
No 56
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A
Probab=20.82 E-value=27 Score=27.65 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.8
Q ss_pred cCCCCeEECC-CCccc
Q psy17358 164 CPCHGSHYDA-SGRIR 178 (202)
Q Consensus 164 CPcHGs~FD~-~G~vi 178 (202)
..-||+.||. ||++.
T Consensus 188 l~V~G~~Ydi~tG~v~ 203 (215)
T 1ym3_A 188 LAIVGVTYQLDDGRAV 203 (215)
T ss_dssp CEEEEEEECTTTCCCE
T ss_pred cEEEEEEEECCCCeEE
Confidence 5789999999 99774
Done!