RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17358
(202 letters)
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1
f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E*
1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E*
1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E*
2bcc_E* ...
Length = 196
Score = 254 bits (649), Expect = 4e-87
Identities = 141/196 (71%), Positives = 166/196 (84%)
Query: 7 AHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFIS 66
+HTDIKVPDFS YRR V D +++E+ EARK FSY+V A T +G AYAAK VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 67 SMAASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDP 126
SM+ASADVLAM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR EI +E AV +S LRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 127 QADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 186
Q D ERVK P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 187 EVPKYEFPEPGLLVVG 202
EVP YEF +++VG
Sbjct: 181 EVPSYEFTSDDMVIVG 196
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E*
1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Length = 185
Score = 218 bits (557), Expect = 3e-73
Identities = 98/192 (51%), Positives = 135/192 (70%), Gaps = 9/192 (4%)
Query: 9 TDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSM 68
+ + P+F +++ + ++++Y + + + AK+ V FISSM
Sbjct: 2 STYRTPNFDDVLKEN---------NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSM 52
Query: 69 AASADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQA 128
A+ADVLAMAK+EV LA IP G+NV KW+GKP+FIRHR EI + +V +S L+DPQ
Sbjct: 53 TATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQT 112
Query: 129 DSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
D++RVKDP+WL+++G+CTHLGCVP+ AGDFGG++CPCHGSHYD SGRIRKGPAPLNLE+
Sbjct: 113 DADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEI 172
Query: 189 PKYEFPEPGLLV 200
P YEF ++V
Sbjct: 173 PAYEFDGDKVIV 184
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8
TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM
helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter
sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E*
2yiu_C*
Length = 187
Score = 198 bits (503), Expect = 3e-65
Identities = 78/188 (41%), Positives = 106/188 (56%), Gaps = 18/188 (9%)
Query: 30 NARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMAKIEVKLADIPE 89
NA + R+ F Y AG GA A A V I+ M SADV A+A I V ++ +
Sbjct: 3 NAEDHAGTRRDFLYYATAGA---GAVATGAAVWPLINQMNPSADVQALASIFVDVSSVEP 59
Query: 90 GRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSE--------------RVKD 135
G +T K+ GKP+FIR R A+I ++V + L D A + +
Sbjct: 60 GVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEA 119
Query: 136 PKWLVLIGVCTHLGCVPVANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFP 194
+WLV+ GVCTHLGC P+ GDFGG++CPCHGSHYD++GRIRKGPAP NL +P +F
Sbjct: 120 GEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFI 179
Query: 195 EPGLLVVG 202
+ + +G
Sbjct: 180 DETTIQLG 187
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex,
histidine ligands, rieske iron-sulfur cluster, electron
transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Length = 129
Score = 182 bits (464), Expect = 7e-60
Identities = 98/129 (75%), Positives = 113/129 (87%)
Query: 74 VLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERV 133
VLAM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR EI +E AV +S LRDPQ D ERV
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 60
Query: 134 KDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEF 193
K P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVP YEF
Sbjct: 61 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 120
Query: 194 PEPGLLVVG 202
+++VG
Sbjct: 121 TSDDMVIVG 129
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S]
ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter
sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Length = 141
Score = 180 bits (457), Expect = 1e-58
Identities = 59/141 (41%), Positives = 86/141 (60%), Gaps = 15/141 (10%)
Query: 77 MAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERV--- 133
+A I V ++ + G +T K+ GKP+FIR R A+I ++V + L D A + +
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 134 -----------KDPKWLVLIGVCTHLGCVPVANA-GDFGGYYCPCHGSHYDASGRIRKGP 181
+ +WLV+ GVCTHLGCVP+ GDFGG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGP 120
Query: 182 APLNLEVPKYEFPEPGLLVVG 202
AP NL +P +F + + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske,
thermosynechococcus elongatu photosynthesis, electron
transport; 2.00A {Thermosynechococcus elongatus}
Length = 133
Score = 161 bits (410), Expect = 1e-51
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 89 EGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADS-ERVKDPKWLVLIGVCTH 147
EGR V G + + A + ++++A DP L VCTH
Sbjct: 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTH 63
Query: 148 LGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
LGCV N + + CPCHGS YD++G++ +GPAPL+L + K E LV
Sbjct: 64 LGCVVPWNVSE-NKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFT 117
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein
complex, electron transfer complex; HET: HEM TDS PL9 OPC
CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1
f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Length = 179
Score = 143 bits (361), Expect = 1e-43
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
Query: 38 RKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAASADVLAMAKIEVKLADIPEGRNVTFKW 97
R+ + + A +V FI + AK ++ ++ + +
Sbjct: 16 RQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLG-NNVKVSKFLESHN 74
Query: 98 RGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD-PKWLVLIGVCTHLGCVPVANA 156
G + ++ DP K+ + + VCTHLGCV NA
Sbjct: 75 AGDRVLVQGLKG---------------DPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA 119
Query: 157 GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
+ + CPCHGS YD +GR+ +GPAPL+L + + +++
Sbjct: 120 AE-NKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIVLTP 164
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster,
electron transport; 1.31A {Thermus thermophilus} SCOP:
b.33.1.1 PDB: 3fou_A
Length = 165
Score = 130 bits (328), Expect = 6e-39
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 81 EVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPK--- 137
++L ++ G + P + + + + DP+ + V
Sbjct: 24 PIRLEELKPGDPFVLAYPMDP----KTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG 79
Query: 138 WLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLEVPKYEFPE 195
+ VCTHLGC+ D CPCHG YD ++ GP P + +
Sbjct: 80 VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVED 139
Query: 196 PGLLVVG 202
L+ G
Sbjct: 140 GVLVAAG 146
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A
{Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Length = 139
Score = 108 bits (270), Expect = 2e-30
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 110 AEIAKEQAVAISTLRDPQADSERV------KDPKWLV-----------LIGVCTHLGCVP 152
A+ A V + A +R DP +LV + VCTHLGCV
Sbjct: 15 AKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVV 74
Query: 153 VANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
NA + + CPCHGS Y+ GR+ +GPAPL+L + + + ++ V
Sbjct: 75 PFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVP 123
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory
chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius}
SCOP: b.33.1.1
Length = 204
Score = 72.5 bits (177), Expect = 4e-16
Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 20/117 (17%)
Query: 97 WRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPK-------WLVLIGVCTHLG 149
+P F+ A + + +++ K VC HLG
Sbjct: 39 LTDEPCFLVDLQALTGQQITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLG 98
Query: 150 CVPVANAGDF-----------GGYYCPCHGSHYDA--SGRIRKGPAPLNLEVPKYEF 193
C A +CPCHGS Y G + GPAP L + ++
Sbjct: 99 CQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDY 155
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.33.1.1 PDB: 1g8j_B*
Length = 133
Score = 60.6 bits (147), Expect = 2e-12
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLI 142
++ V+F + VA+ + V +V
Sbjct: 13 VAKNLAANEPVSFTYPD-------------TSSPCVAV---KLGAPVPGGVGPDDDIVAY 56
Query: 143 -GVCTHLGCVPVANAGDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLE 187
+CTH+GC P + + CPCH + +DA +G++ G A +L
Sbjct: 57 SVLCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLP 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 30/159 (18%), Positives = 47/159 (29%), Gaps = 58/159 (36%)
Query: 35 EEARKAFSYVVAAGTAIG---GAYAAKAVVTQFISSMAASADVLAMAKIE--VKLADIPE 89
E+ + A A G G YAA +A+ ADV++ IE V++
Sbjct: 1745 EDLKSKGLIPADATFA-GHSLGEYAA----------LASLADVMS---IESLVEV----- 1785
Query: 90 GRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLR----DPQA-----DSERVKDPKWLV 140
+F R + S +P E ++ V
Sbjct: 1786 ------------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY----V 1829
Query: 141 LIGVCTHLGC-VPVANAGDFGGYYCPCHGSHYDASGRIR 178
+ V G V + N Y Y A+G +R
Sbjct: 1830 VERVGKRTGWLVEIVN------YNVE--NQQYVAAGDLR 1860
Score = 34.6 bits (79), Expect = 0.022
Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 58/207 (28%)
Query: 11 IKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSMAA 70
I V +HY + K G E R G ++ +VT +
Sbjct: 241 IGVIQLAHYVV-TAKLLGFT---PGELRSYLK---------GATGHSQGLVTAVAIAETD 287
Query: 71 S-ADVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIR-HRAAAEIAKEQAVAISTLRDPQA 128
S + + + F + G +R + A + + S L D
Sbjct: 288 SWESFFVSVRKAITVL---------F-FIG----VRCYEAYPNTS----LPPSILEDSLE 329
Query: 129 DSERVKDPKWLVLIG------------VCTHLGC-----VPVANAGD-F--GGYYCPCHG 168
++E V P L + +HL + + N G P
Sbjct: 330 NNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--P--Q 384
Query: 169 SHYDASGRIRKGPAPLNLEVPKYEFPE 195
S Y + +RK AP L+ + F E
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Score = 29.2 bits (65), Expect = 0.93
Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 55/162 (33%)
Query: 55 YAAKAVVTQFISSMAASADVLAMAKIEVKLADI-----------PEGRNV--TFKWRGKP 101
A+ + + + SA A+ + +L I E R++ T+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 102 LFIRHRAAAEIAKEQAVAIST-------------LRDPQADSERVKDPKWLVLIGVCTHL 148
L +A +++ + L +P D +L+
Sbjct: 187 LI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENP----SNTPDKDYLL-------- 232
Query: 149 GCVPVANAGDFGGYYCPCHG----SHYDASGRIRKGPAPLNL 186
+P++ CP G +HY + ++ G P L
Sbjct: 233 -SIPIS---------CPLIGVIQLAHYVVTAKL-LGFTPGEL 263
Score = 28.9 bits (64), Expect = 1.2
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 26/111 (23%)
Query: 99 GKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGD 158
G L+ +AA ++ AD KD ++ + + PV
Sbjct: 1632 GMDLYKTSKAAQDVWNR------------AD-NHFKDTYGFSILDIVIN---NPVNLTIH 1675
Query: 159 FGG---------YYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEP-GLL 199
FGG Y + D + K +N Y F GLL
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase
protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Length = 119
Score = 33.5 bits (77), Expect = 0.014
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 38/125 (30%)
Query: 76 AMAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVK 134
A+ K+++ +L D+ T G+ VA+ +
Sbjct: 3 ALTKVKLCQLDDLMPFIGATVLIEGER----------------VALF----------YIP 36
Query: 135 DPKWLVLIGVCTHLGCVPVANAGDFGGY------YCPCHGSHYD-ASGRIRKGPAPLNLE 187
D + V + G G P + H+ SG+ + A
Sbjct: 37 DSGVYAVQDWDPIGK-AYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA---HC 92
Query: 188 VPKYE 192
+ +
Sbjct: 93 LKTWR 97
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske
ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism,
electron transport, iron; 1.85A {Pseudomonas putida}
Length = 103
Score = 32.9 bits (76), Expect = 0.014
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 33/116 (28%)
Query: 77 MAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD 135
+ IE L+DI EG + GK +A+ V+
Sbjct: 2 VKWIEAVALSDILEGDVLGVTVEGKE----------------LALY----------EVEG 35
Query: 136 PKWLVLIGVCTHLGCVPVANAGDFGGYY--CPCHGSHYD-ASGRIRKGPAPLNLEV 188
+ +CTH +++ G G CP H +D +G+ P N++
Sbjct: 36 -EIYATDNLCTHGS-ARMSD-GYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKT 88
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster,
beta sandwich, oxido; 1.60A {Burkholderia xenovorans}
SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Length = 112
Score = 33.0 bits (76), Expect = 0.017
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 32/116 (27%)
Query: 77 MAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD 135
M V D+PEG + + G VAI V
Sbjct: 4 MKFTRVCDRRDVPEGEALKVESGGTS----------------VAIF----------NVDG 37
Query: 136 PKWLVLIGVCTHLGCVPVANAGDFGGYY--CPCHGSHYD-ASGRIRKGPAPLNLEV 188
+ CTH +++ G G C H + +G+++ P L++
Sbjct: 38 -ELFATQDRCTHGD-WSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKI 91
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske
ferredoxin, 2Fe-2S, electron transfer, oxidoreductase;
2.00A {Nocardioides aromaticivorans}
Length = 121
Score = 32.3 bits (74), Expect = 0.033
Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 33/115 (28%)
Query: 79 KIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPK 137
+ V L + G F G + + + AIS
Sbjct: 11 PVRVATLDQLKPGVPTAFDVDGDEVMVVR------DGDSVYAIS---------------- 48
Query: 138 WLVLIGVCTHLGCVPVAN---AGDFGGYYCPCHGSHYD-ASGRIRKGPAPLNLEV 188
+C+H + + CP H +D +G P L +
Sbjct: 49 -----NLCSHAE-AYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRA 97
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske,
iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons
catabolism, electron transport; 1.20A {Pseudomonas
putida}
Length = 106
Score = 31.4 bits (72), Expect = 0.059
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 143 GVCTHLGCVPVANAGDFGGYY--CPCHGSHYD-ASGRIRKGPAPLNLEV 188
CTH +++ G G C H + +G+++ PA ++V
Sbjct: 40 DTCTHGD-WALSD-GYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKV 86
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin,
oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Length = 108
Score = 31.1 bits (71), Expect = 0.077
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 33/117 (28%)
Query: 77 MA-KIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVK 134
M+ K+ + ++A + +G V P + E+
Sbjct: 1 MSNKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEV-----FVTD------------- 42
Query: 135 DPKWLVLIGVCTHLGCVPVANAGDFGGYY--CPCHGSHYD-ASGRIRKGPAPLNLEV 188
+CTH + + G G CP HG +D A+G + P + ++
Sbjct: 43 --------NLCTHGN-AMLTD-GYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKT 89
>2de6_D Ferredoxin component of carbazole; electron transfer complex,
rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D
1vck_A 2de7_D*
Length = 115
Score = 31.1 bits (71), Expect = 0.082
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 143 GVCTHLGCVPVANAGDFGGYY--CPCHGSHYD-ASGRIRKGPAPLNLEV 188
CTH ++ G G CP HG ++ +G P + L V
Sbjct: 44 DTCTHGI-ASLSE-GTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGV 90
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin,
[2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus
musculus}
Length = 157
Score = 30.3 bits (68), Expect = 0.25
Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 33/141 (23%)
Query: 66 SSMAASADVLAMAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLR 124
+ + V + DI + +T + + I +
Sbjct: 4 EISEQDEEKKKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH----------------- 46
Query: 125 DPQADSERVKDPKWLVLIGVCTHLGCV----PVANAGDFGGYYCPCHGSHYD-ASGRIRK 179
++ + C H G + + CP H A+G
Sbjct: 47 ----------KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLY 96
Query: 180 GPAPLNLEVPKYEFPEPGLLV 200
K ++ G+
Sbjct: 97 QSINPKDPSAKPKWCSKGVKQ 117
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics,
CESG, protein structure initiative, PSI, ferredoxin,
FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina}
SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Length = 111
Score = 29.2 bits (66), Expect = 0.43
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 33/113 (29%)
Query: 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLI 142
L DI G TF E + V I ++
Sbjct: 7 SLDDIWVGEMETF---------------ETSDGTEVLIV----------NSEEHGVKAYQ 41
Query: 143 GVCTHLGCVPVANAGDFGGY--YCPCHGSHYD-ASGRIRKGPAPLNLEVPKYE 192
+C H + ++ G + G C H ++ +G G P + + +Y
Sbjct: 42 AMCPHQE-ILLSE-GSYEGGVITCRAHLWTFNDGTG---HGINPDDAALAEYP 89
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.00A {Trypanosoma cruzi}
Length = 204
Score = 29.5 bits (66), Expect = 0.51
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 63 QFISSMAASADVLAMAKIEVKLA---DIPEGRNVT---FKWRGKPLFIRHRAAAEIAKEQ 116
+F+ +A SA+ + +A L + + R +
Sbjct: 31 KFMGRIANSANCVFVANRFAGLHTALGTAHSVYIVTEQYPKGLGATSADIRLPPDAHVFS 90
Query: 117 AVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGY 162
+ L + + + +VL G TH+ + A A
Sbjct: 91 KKRFAMLVPQVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKK 136
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 29.1 bits (66), Expect = 0.97
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 148 LGCVPVANAGDFGGYYCPCHGSHYDASGR 176
LG P AN GD + P HG+ +D +G+
Sbjct: 237 LGIAPSANIGDKKALFEPVHGAAFDIAGK 265
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske
iron-sulfur protein, 3-layer beta- sandwich; NMR
{Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Length = 130
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 8/82 (9%)
Query: 108 AAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGY----- 162
+I V + A D + + + V + G +
Sbjct: 9 KLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQ-ASVLSRGIVAEHQDDLW 67
Query: 163 -YCPCHGSHYD-ASGRIRKGPA 182
P H+ G + A
Sbjct: 68 VASPLKKQHFRLYDGFCLEDGA 89
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain,
rieske iron-sulfur protein, 3-layer sandwich, structural
genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Length = 113
Score = 27.8 bits (62), Expect = 1.3
Identities = 7/81 (8%), Positives = 18/81 (22%), Gaps = 6/81 (7%)
Query: 108 AAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGVCTHLGCVPVANA--GDFGGY--- 162
+I E V + A + + + ++ + G
Sbjct: 12 KIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWV 71
Query: 163 YCPCHGSHYD-ASGRIRKGPA 182
P + + G +
Sbjct: 72 ASPLKKQRFRLSDGLCMEDEQ 92
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 27.6 bits (62), Expect = 2.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 148 LGCVPVANAGDFGGYYCPCHGS 169
LG VP AN GD P HGS
Sbjct: 273 LGLVPSANVGDNFVMSEPVHGS 294
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 26.9 bits (60), Expect = 4.5
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 12/52 (23%)
Query: 114 KEQAVAISTLRDPQADSER------------VKDPKWLVLIGVCTHLGCVPV 153
+ VA+ +L+ + + + G+CT G +
Sbjct: 49 TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 27.1 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSER------------VKDPKWLVLIGVCT 146
AVAI T ++ +DS R P + LIGV T
Sbjct: 417 PAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT 461
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 26.7 bits (60), Expect = 5.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 148 LGCVPVANAGDFGGYYCPCHGS 169
LG P N GD + P HGS
Sbjct: 240 LGLAPSGNIGDTTAVFEPVHGS 261
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 26.9 bits (60), Expect = 5.3
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 13/46 (28%)
Query: 114 KEQAVAISTLRDPQADSERVKD-------------PKWLVLIGVCT 146
VA+ L+ S +++ P L+GV
Sbjct: 50 SFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSL 95
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 26.6 bits (59), Expect = 5.4
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSER------------VKDPKWLVLIGVCT 146
K+ A+ +L E P L L+G+C
Sbjct: 116 KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL 160
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 26.5 bits (59), Expect = 5.9
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSERVK------------DPKWLVLIGVCT 146
KE VAI TL+ + +RV + L GV +
Sbjct: 72 KEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS 116
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 26.5 bits (59), Expect = 6.0
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSER------------VKDPKWLVLIGVCT 146
K+ A+ +L E P L L+G+C
Sbjct: 52 KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL 96
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 26.5 bits (59), Expect = 7.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSERVK------------DPKWLVLIGVCT 146
++ VAI L+ + +R P + L GV T
Sbjct: 76 RDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVT 120
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 26.2 bits (58), Expect = 7.9
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSERVK------------DPKWLVLIGVCT 146
KE +VAI TL+ + +R P + L GV T
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT 116
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 26.0 bits (58), Expect = 8.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 114 KEQAVAISTLRDPQADSERV------------KDPKWLVLIGVCT 146
+ QAVAI TL+D R + P + L+GV T
Sbjct: 38 QTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVT 82
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 26.2 bits (58), Expect = 9.0
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 11/51 (21%)
Query: 114 KEQAVAISTLRDPQADSER-----------VKDPKWLVLIGVCTHLGCVPV 153
VA+ L+ D +R + + GV G +
Sbjct: 51 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 26.0 bits (58), Expect = 9.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 148 LGCVPVANAGDFGGYYCPCHGSHYDASGR 176
LG +P A+ G + P HGS D +G+
Sbjct: 257 LGLLPSASLGRGTPVFEPVHGSAPDIAGK 285
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 26.1 bits (58), Expect = 9.8
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 13/46 (28%)
Query: 114 KEQAVAISTLRDPQADSERVKD-------------PKWLVLIGVCT 146
VA+ T++ + +++ P + L+GVC
Sbjct: 61 TSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,291,387
Number of extensions: 201412
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 54
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)