RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17358
(202 letters)
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome
bc1-complex, water-soluble domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 127
Score = 158 bits (401), Expect = 7e-51
Identities = 96/127 (75%), Positives = 111/127 (87%)
Query: 76 AMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD 135
AM+KIE+KL+DIPEG+N+ FKWRGKPLF+RHR EI +E AV +S LRDPQ D ERVK
Sbjct: 1 AMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKK 60
Query: 136 PKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPE 195
P+W++LIGVCTHLGCVP+ANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVP YEF
Sbjct: 61 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTS 120
Query: 196 PGLLVVG 202
+++VG
Sbjct: 121 DDMVIVG 127
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
cytochrome bc1-complex, water-soluble domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 147 bits (373), Expect = 1e-46
Identities = 85/128 (66%), Positives = 106/128 (82%)
Query: 73 DVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSER 132
DVLAMAK+EV LA IP G+NV KW+GKP+FIRHR EI + +V +S L+DPQ D++R
Sbjct: 1 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADR 60
Query: 133 VKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYE 192
VKDP+WL+++G+CTHLGCVP+ AGDFGG++CPCHGSHYD SGRIRKGPAPLNLE+P YE
Sbjct: 61 VKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYE 120
Query: 193 FPEPGLLV 200
F ++V
Sbjct: 121 FDGDKVIV 128
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase), transmembrane region {Cow (Bos taurus)
[TaxId: 9913]}
Length = 69
Score = 111 bits (280), Expect = 2e-33
Identities = 45/69 (65%), Positives = 55/69 (79%)
Query: 7 AHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFIS 66
+HTDIKVPDFS YRR V D +++E+ EARK FSY+V A T +G AYAAK VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 67 SMAASADVL 75
SM+ASADVL
Sbjct: 61 SMSASADVL 69
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus
[TaxId: 274]}
Length = 156
Score = 80.5 bits (198), Expect = 5e-20
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 13/150 (8%)
Query: 62 TQFISSMAASADVLAMAK-----IEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQ 116
T + D+L A+ ++L ++ G + P ++
Sbjct: 1 TPEKEPLKPG-DILVYAQGGGEPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLL 59
Query: 117 AVAISTLRDPQADSERVKDPK--WLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDAS 174
+ E + + VCTHLGC+ D CPCHG YD
Sbjct: 60 VA---RFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLR 116
Query: 175 --GRIRKGPAPLNLEVPKYEFPEPGLLVVG 202
++ GP P + + L+ G
Sbjct: 117 HGAQVIAGPPPRPVPQLPVRVEDGVLVAAG 146
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase), transmembrane region {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 76.8 bits (189), Expect = 8e-20
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 9 TDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAVVTQFISSM 68
+ + P+F ++ + ++++Y + + + AK+ V FISSM
Sbjct: 2 STYRTPNFDDVLKE---------NNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSM 52
Query: 69 AASA 72
A+A
Sbjct: 53 TATA 56
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 202
Score = 70.5 bits (172), Expect = 6e-16
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 33/143 (23%)
Query: 82 VKLADIPEGRNVTFKWRGKPLFIRHRA-------AAEIAKEQAVAISTLRDPQADSERVK 134
K+A+I + + K G ++ ++ I+ + +P
Sbjct: 11 YKVANIQQVQ-QQIKSSGCAVYFFAYPLTDEPCFLVDLQALTGQQITEIPNPYYGKYAGP 69
Query: 135 DPKWLVLIGV------------CTHLGCVP-----------VANAGDFGGYYCPCHGSHY 171
+ + GV C HLGC +CPCHGS Y
Sbjct: 70 LGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIY 129
Query: 172 DAS--GRIRKGPAPLNLEVPKYE 192
G + GPAP L + +
Sbjct: 130 ALKDGGVVVSGPAPRPLPIVILD 152
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 62.4 bits (151), Expect = 2e-13
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 144 VCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVV 201
VCTHLGCV NA + + CPCHGS Y+ GR+ +GPAPL+L + + + ++ V
Sbjct: 54 VCTHLGCVVPFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFV 110
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
complex, soluble domain {Mastigocladus laminosus [TaxId:
83541]}
Length = 134
Score = 56.3 bits (135), Expect = 4e-11
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 99 GKPLFIRHRAAAEIAKEQAVAISTLRDP-QADSERVKDPKWLVLIGVCTHLGCVPVANAG 157
G + + + A ++ + DP E + + + VCTHLGCV NA
Sbjct: 16 GNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA 75
Query: 158 DFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGLLVV 201
+ + CPCHGS YD +G++ +GPAPL+L + + +++
Sbjct: 76 E-NKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLT 118
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes
faecalis [TaxId: 511]}
Length = 133
Score = 46.9 bits (111), Expect = 9e-08
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLI 142
++ V+F + + ++ D +
Sbjct: 13 VAKNLAANEPVSFTYP---------------DTSSPCVAVKLGAPVPGGVGPDDDIVAYS 57
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCHGSHYDA--SGRIRKGPAPLNLEVPKYEFPEPGLLV 200
+CTH+GC P + + CPCH + +DA +G++ G A +L + +
Sbjct: 58 VLCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDAL 116
Query: 201 V 201
Sbjct: 117 T 117
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C,
TmoC {Pseudomonas mendocina [TaxId: 300]}
Length = 109
Score = 32.7 bits (74), Expect = 0.008
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 132 RVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
++ +C H + + + G C H ++ P L
Sbjct: 31 NSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAE 87
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Length = 109
Score = 31.2 bits (70), Expect = 0.025
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 30/115 (26%)
Query: 77 MAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD 135
M V D+PEG + + G + I + D
Sbjct: 1 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV---------------------------D 33
Query: 136 PKWLVLIGVCTHLGCVPVANA-GDFGGYYCPCHGSHYD-ASGRIRKGPAPLNLEV 188
+ CTH + C H + +G+++ P L++
Sbjct: 34 GELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKI 88
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit
NirD {Vibrio parahaemolyticus [TaxId: 670]}
Length = 108
Score = 29.0 bits (64), Expect = 0.14
Identities = 10/118 (8%), Positives = 25/118 (21%), Gaps = 32/118 (27%)
Query: 77 MAKIEV-KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKD 135
+ K+++ +L D+ T G+ + + + D
Sbjct: 1 LTKVKLCQLDDLMPFIGATVLIEGERVALF--------------------------YIPD 34
Query: 136 PKWLVLIGVCTHLGC-----VPVANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEV 188
+ V + P + H+ L+
Sbjct: 35 SGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAHCLKT 92
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 26.3 bits (58), Expect = 0.35
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 6/35 (17%)
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCH-GSHYDASGR 176
+C C G Y C C G +
Sbjct: 10 LLCRGGVCHNT-----EGSYRCECPPGHQLSPNIS 39
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline
8-monooxygenase, oxygenase component OxoO {Pseudomonas
putida [TaxId: 303]}
Length = 148
Score = 27.8 bits (61), Expect = 0.63
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 29/99 (29%)
Query: 85 ADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLIGV 144
++ E + + G P+ +R + K L
Sbjct: 36 HELEEDQVQGIQICGVPIVLRR---------------------------VNGKVFALKDQ 68
Query: 145 CTHLGCVPVANAGDF--GGYYCPCHGSHYDASGRIRKGP 181
C H G F C HG +D
Sbjct: 69 CLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTI 107
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 25.7 bits (56), Expect = 0.88
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 143 GVCTHLGCVPVANAGDF-GGYYCPCH 167
G C +L C+P + C C
Sbjct: 12 GGCQYL-CLPAPQINPHSPKFTCACP 36
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 27.6 bits (61), Expect = 0.97
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 19/91 (20%)
Query: 67 SMAASADVLAMAKIEVKLADI--PEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLR 124
A V +K + EG + G + R +I E A
Sbjct: 46 MAGAGHAVEEALHEAIKGDFVCVIEG-GIPMGDGGYWGKVGGRNMYDICAEVA------- 97
Query: 125 DPQADSERVKDPKWLVLIGVCTHLGCVPVAN 155
K ++ IG C G V A
Sbjct: 98 ---------PKAKAVIAIGTCATYGGVQAAK 119
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.1 bits (55), Expect = 1.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCH-GSHYDASGR 176
G+C C+ FG + C C G + + R
Sbjct: 11 GLCQGGKCINT-----FGSFQCRCPTGYYLNEDTR 40
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 267
Score = 26.8 bits (59), Expect = 1.9
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 22/92 (23%)
Query: 68 MAAS---ADVLAMAKIEVKLADI--PEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAIST 122
MAA+ A+ + I EG + G + + +I
Sbjct: 49 MAAAGDAAEAALEQAVNSPHGFIAVVEG-GIPTAANGIYGKVANHTMLDICSRIL----- 102
Query: 123 LRDPQADSERVKDPKWLVLIGVCTHLGCVPVA 154
+ ++ G C G V A
Sbjct: 103 -----------PKAQAVIAYGTCATFGGVQAA 123
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 25.9 bits (56), Expect = 4.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 149 GCVPVANAGDFGGYYCPCHGSHYDASGR 176
G P AN GD + HG+ +G+
Sbjct: 321 GIAPGANIGDECALFEATHGTAPKYAGQ 348
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha
subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId:
92694]}
Length = 162
Score = 25.2 bits (54), Expect = 4.6
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 145 CTHLGCVPVANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPKYEFPEPGL 198
C H G G+ + CP HG Y +G + PA + + + + L
Sbjct: 88 CRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNL 142
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit
NirD {Erwinia carotovora [TaxId: 554]}
Length = 122
Score = 25.0 bits (53), Expect = 5.0
Identities = 13/90 (14%), Positives = 20/90 (22%), Gaps = 20/90 (22%)
Query: 83 KLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAISTLRDPQADSERVKDPKWLVLI 142
KL DI G V + A ++ V + DP A + +
Sbjct: 9 KLDDILPGTGVCALVEQ-----QQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63
Query: 143 GVCTHLGCVPVANAGDFGGYYCPCHGSHYD 172
P H+
Sbjct: 64 DDLWV---------------ASPLKKQHFR 78
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 295
Score = 25.2 bits (55), Expect = 5.4
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 1 SNQVRFAHTDIKVPDFSHYRRDSVKDPGVNARETEEARKAFSYVVAAGTAIGGAYAAKAV 60
+ F + + + + G N T + + +++G Y K
Sbjct: 47 QQPLFFYIKKDRFDNHGYDQYFYDNTVGPNGIPTLNTYTG--EIPSDSSSLGSTYWKKYN 104
Query: 61 VTQFISSMAASADVLAMAKIEVKLADIPEGRNV 93
+T S + S I++ L ++ EG+ V
Sbjct: 105 LTNETSIIRVSNSARGANGIKIALEEVQEGKPV 137
>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli
[TaxId: 562]}
Length = 195
Score = 24.7 bits (53), Expect = 6.6
Identities = 10/105 (9%), Positives = 22/105 (20%), Gaps = 10/105 (9%)
Query: 73 DVLAMAKIEVKLADIPEGRNVTFKWRGKPLFIRHRAAAEIAKEQAVAI----------ST 122
D+L I+V A + N+ + E+A + I
Sbjct: 22 DLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 81
Query: 123 LRDPQADSERVKDPKWLVLIGVCTHLGCVPVANAGDFGGYYCPCH 167
+ + ++ + F
Sbjct: 82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGF 126
>d2fb5a1 d.320.1.1 (A:5-205) Hypothetical protein BC4920 (YojJ)
{Bacillus cereus [TaxId: 1396]}
Length = 201
Score = 24.4 bits (53), Expect = 8.7
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 105 RHRAAAEIAKE-QAVAIS 121
RHRAA ++++ A+ +
Sbjct: 163 RHRAAIGLSEKSDALILV 180
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 23.7 bits (51), Expect = 9.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 169 SHYDASGRIRKGPAPLNLEVPKYEFPEPG 197
H +A +IR+ +PL L++ + P G
Sbjct: 66 LHAEAQSKIRQSASPLRLQLDRSSGPSSG 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 772,100
Number of extensions: 34714
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 28
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)