Query psy1736
Match_columns 125
No_of_seqs 102 out of 856
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:23:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 99.9 3.9E-28 8.4E-33 203.9 4.5 116 1-124 588-705 (707)
2 PHA02782 hypothetical protein; 65.9 13 0.00028 30.6 4.5 85 25-122 390-488 (503)
3 cd05792 S1_eIF1AD_like S1_eIF1 25.7 67 0.0015 20.0 2.1 21 103-123 25-45 (78)
4 PRK13680 hypothetical protein; 24.3 1.5E+02 0.0033 19.9 3.7 43 38-90 56-98 (117)
5 PF11623 DUF3252: Protein of u 19.9 56 0.0012 18.8 0.8 11 32-42 33-43 (53)
6 PHA02633 hypothetical protein; 18.3 2.4E+02 0.0051 16.9 3.7 23 62-88 20-42 (63)
7 COG4067 Uncharacterized protei 17.1 2.3E+02 0.005 20.1 3.6 43 28-70 56-99 (162)
8 COG1564 THI80 Thiamine pyropho 15.2 98 0.0021 23.0 1.4 19 28-46 158-176 (212)
9 TIGR01378 thi_PPkinase thiamin 14.4 1.4E+02 0.003 21.6 2.0 19 30-48 157-175 (203)
10 COG3506 Uncharacterized conser 13.2 1.5E+02 0.0034 21.4 1.9 23 100-122 55-90 (189)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.94 E-value=3.9e-28 Score=203.86 Aligned_cols=116 Identities=42% Similarity=0.754 Sum_probs=73.6
Q ss_pred CcccceEEEeEEEEEecc--CcCCCCCCceEEcceEEEeeeEeCCCCeeeecCCccccccCCeEEEEeeeccccCCCCeE
Q psy1736 1 MTIPIDHLTFDFVVLQIN--KSESPPEDGVYCYGLFLDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVELQIGSRY 78 (125)
Q Consensus 1 ~~~sld~l~~~~~v~~~~--~~~~~~~~G~~v~GL~LeGA~Wd~~~~~L~e~~~~~l~~~lPvi~l~~~~~~~~~~~~~y 78 (125)
++||||+|.|.++|+... +....+++|+||+||+||||+||...+++.++.++.++++||++|++|+........+.|
T Consensus 588 ~~~~ld~L~l~~~v~~~~~~~~~~~~~~g~~I~GL~leGA~wd~~~~~l~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~y 667 (707)
T PF03028_consen 588 NKIPLDQLTLSFEVTSSEDENIRSPPEDGVYIHGLFLEGARWDGQKGCLEESSPKSLYPPMPVIWLKPVQASPQSSDNSY 667 (707)
T ss_dssp TT-----EE--EE--------------EEEEE-SEEEESSEEET-TCEE--SSSEEEES-EEEE-EE-----TTCGGCSE
T ss_pred cCcCchhcceeEEEEeccccccccccccceEEEeEEecccEeccccCcccCCCcccccccCceeEeccccccccCCCCEE
Confidence 479999999999998753 233357899999999999999999999999999999999999999999877555677889
Q ss_pred EeeeeeeeeeCCcccCCCCcccEEEEEEecCCCCCCeEEeeceeec
Q psy1736 79 VCPLYKTSERRGTLSTTGHSTNYVIPLLLNTGLPSSHWKNKCGQVG 124 (125)
Q Consensus 79 ~cPvY~~~~R~~~l~t~g~s~n~v~~v~L~~~~~~~~Wi~rgval~ 124 (125)
.||||+++.|++ +|||++++|||+.++++||+|||||+
T Consensus 668 ~~PvY~~~~R~~--------~~~v~~l~l~~~~~~~~Wi~rGvAl~ 705 (707)
T PF03028_consen 668 ECPVYKTSSREG--------LNFVFSLPLPTDEDPDHWILRGVALL 705 (707)
T ss_dssp EEEEESSTT--S----------EEEEEEE-B-T-HHHHHTTT-EEE
T ss_pred ECCceecCcCCC--------CeEEEEEEcCCCCCHHHHHHHhHHHh
Confidence 999999999987 37999999999999999999999985
No 2
>PHA02782 hypothetical protein; Provisional
Probab=65.88 E-value=13 Score=30.64 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=51.4
Q ss_pred CCceEEcceE-----EEeeeEeCCCCeeeecCCccccccCCeEEEEeeeccccCCCCeEEe---eeeeeeeeCCcccCCC
Q psy1736 25 EDGVYCYGLF-----LDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVELQIGSRYVC---PLYKTSERRGTLSTTG 96 (125)
Q Consensus 25 ~~G~~v~GL~-----LeGA~Wd~~~~~L~e~~~~~l~~~lPvi~l~~~~~~~~~~~~~y~c---PvY~~~~R~~~l~t~g 96 (125)
+-|+.+.|+- +-|++-|.+...+.+......+..||+.||.- . +..-.|.| =||.. |.|.+.|
T Consensus 390 ~GGyLfIGVdDdt~~IiG~~~e~e~L~~Le~aIe~cI~KLPV~HFC~-e----K~kIkYt~KfieVy~~----G~l~~~G 460 (503)
T PHA02782 390 EGGYLFIGVDNNTHKVIGFTVGQDYLKLVENDIEKYIKRLRVVHFCE-K----KEDIKYACRFIKVYKP----GEETTST 460 (503)
T ss_pred CCCEEEEEEcCCCCeEeeeecCHHHHHHHHHHHHHHHHhCCeeEeec-c----CCccceEEEEEEEecC----Cccccee
Confidence 4477766664 55666444433333344445678899999973 1 12345777 34543 4543333
Q ss_pred CcccEEEEEEecC------CCCCCeEEeecee
Q psy1736 97 HSTNYVIPLLLNT------GLPSSHWKNKCGQ 122 (125)
Q Consensus 97 ~s~n~v~~v~L~~------~~~~~~Wi~rgva 122 (125)
||+.|.+.- .+.|+-|+.+.-+
T Consensus 461 ----YVCaIKVErFCCAVFAe~PeSW~Vkd~~ 488 (503)
T PHA02782 461 ----YVCAIKVERCCCAVFADWPESWYMDTSG 488 (503)
T ss_pred ----EEEEEEecceeEEEEcCCCceeEEccCc
Confidence 999988862 4678899887543
No 3
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=25.67 E-value=67 Score=19.97 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.5
Q ss_pred EEEEecCCCCCCeEEeeceee
Q psy1736 103 IPLLLNTGLPSSHWKNKCGQV 123 (125)
Q Consensus 103 ~~v~L~~~~~~~~Wi~rgval 123 (125)
+-+.+|..-....||+||--+
T Consensus 25 ~l~~iP~KfRk~iWIkrGd~V 45 (78)
T cd05792 25 YLVSMPTKFRKNIWIKRGDFV 45 (78)
T ss_pred EEEEechhhcccEEEEeCCEE
Confidence 345578777789999998543
No 4
>PRK13680 hypothetical protein; Provisional
Probab=24.31 E-value=1.5e+02 Score=19.95 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=26.8
Q ss_pred eeEeCCCCeeeecCCccccccCCeEEEEeeeccccCCCCeEEeeeeeeeeeCC
Q psy1736 38 ARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVELQIGSRYVCPLYKTSERRG 90 (125)
Q Consensus 38 A~Wd~~~~~L~e~~~~~l~~~lPvi~l~~~~~~~~~~~~~y~cPvY~~~~R~~ 90 (125)
.||+.++..|- ..-|++|+..... ....+.|..|+=-.-.+++
T Consensus 56 ~RW~~Dkk~LG--------t~~PVaWin~~~i--tg~~~~~~VPltVRG~k~d 98 (117)
T PRK13680 56 ARWADDQKQLG--------QADPVAWVNVQDI--TGKDDKWQVPLTVRGKSAD 98 (117)
T ss_pred cchhhhHhhcC--------CCCCeEEEccccc--ccccceEEEEEEEecccCc
Confidence 37887654432 2358888876443 3467889999866555543
No 5
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=19.92 E-value=56 Score=18.80 Aligned_cols=11 Identities=27% Similarity=1.150 Sum_probs=8.6
Q ss_pred ceEEEeeeEeC
Q psy1736 32 GLFLDGARWDR 42 (125)
Q Consensus 32 GL~LeGA~Wd~ 42 (125)
|.-+||+.||.
T Consensus 33 aVLFEGGnWdK 43 (53)
T PF11623_consen 33 AVLFEGGNWDK 43 (53)
T ss_dssp EEEEEETTEEE
T ss_pred EEEecCCCceE
Confidence 34689999994
No 6
>PHA02633 hypothetical protein; Provisional
Probab=18.28 E-value=2.4e+02 Score=16.88 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=14.1
Q ss_pred EEEEeeeccccCCCCeEEeeeeeeeee
Q psy1736 62 IWFVPTKKVELQIGSRYVCPLYKTSER 88 (125)
Q Consensus 62 i~l~~~~~~~~~~~~~y~cPvY~~~~R 88 (125)
+||-|..+ ...+.|.| ++++...
T Consensus 20 Lwilpa~~---sDSGiYiC-~~rn~t~ 42 (63)
T PHA02633 20 MLILNPTQ---SDSGIYMC-ITKNETY 42 (63)
T ss_pred EEEecccc---ccCcEEEE-EEcCCCe
Confidence 35666443 34688999 6665544
No 7
>COG4067 Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]
Probab=17.12 E-value=2.3e+02 Score=20.14 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=24.7
Q ss_pred eEEcceEEEeeeEeCCCCe-eeecCCccccccCCeEEEEeeecc
Q psy1736 28 VYCYGLFLDGARWDRTSNQ-LAEQFPKVLNDALPIIWFVPTKKV 70 (125)
Q Consensus 28 ~~v~GL~LeGA~Wd~~~~~-L~e~~~~~l~~~lPvi~l~~~~~~ 70 (125)
.-|.++.=+|++|..-... ..+.......+.+|+|...-++.+
T Consensus 56 ~dI~~fkRdGe~WVRF~~~~~~~~~~~~~~~e~pvi~~ikvR~s 99 (162)
T COG4067 56 SDIERFKRDGERWVRFRLADTDNLDQRSEECEAPVIRKIKVRSS 99 (162)
T ss_pred ecceeeeeCCceEEEEEeecccCccccceeeccceEEEEEEecC
Confidence 4477778889999854322 112222233556777766655544
No 8
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=15.22 E-value=98 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.1
Q ss_pred eEEcceEEEeeeEeCCCCe
Q psy1736 28 VYCYGLFLDGARWDRTSNQ 46 (125)
Q Consensus 28 ~~v~GL~LeGA~Wd~~~~~ 46 (125)
--+.||.++|++|..++..
T Consensus 158 ~~~~~Lti~g~KypL~~~~ 176 (212)
T COG1564 158 EDVAGLTIKGAKYPLKNAD 176 (212)
T ss_pred ccccceEeccceeeccCcc
Confidence 3468999999999987544
No 9
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=14.43 E-value=1.4e+02 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=14.9
Q ss_pred EcceEEEeeeEeCCCCeee
Q psy1736 30 CYGLFLDGARWDRTSNQLA 48 (125)
Q Consensus 30 v~GL~LeGA~Wd~~~~~L~ 48 (125)
+.|+.++|.+|+.....|.
T Consensus 157 ~~~vt~~Glky~L~~~~l~ 175 (203)
T TIGR01378 157 AHGLTTKGLKYPLNNAHLK 175 (203)
T ss_pred cccEEeeCCEeecCCceee
Confidence 5679999999998765543
No 10
>COG3506 Uncharacterized conserved protein [Function unknown]
Probab=13.17 E-value=1.5e+02 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=16.2
Q ss_pred cEEEEEEecC-------------CCCCCeEEeecee
Q psy1736 100 NYVIPLLLNT-------------GLPSSHWKNKCGQ 122 (125)
Q Consensus 100 n~v~~v~L~~-------------~~~~~~Wi~rgva 122 (125)
+|.+.+.+.- ..+..|||+.|.-
T Consensus 55 dFta~vkV~g~Y~~LyDQaGlmirlde~hWiKagIE 90 (189)
T COG3506 55 DFTATVKVKGAYKQLYDQAGLMIRLDEQHWIKAGIE 90 (189)
T ss_pred CeEEEEEEEeeHHHHHhhcCeEEEEccCCeeEeeeE
Confidence 6887777763 2367899999753
Done!