Query psy1736
Match_columns 125
No_of_seqs 102 out of 856
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 20:23:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.9 1.6E-25 5.3E-30 206.6 3.2 107 1-124 3127-3239(3245)
2 2p9w_A MAL S 1 allergenic prot 22.5 26 0.0009 26.6 0.9 18 29-46 9-26 (334)
3 2lfe_A E3 ubiquitin-protein li 14.6 1.6E+02 0.0054 19.3 3.1 24 95-118 46-69 (138)
4 2jz2_A SSL0352 protein; SH3-li 14.3 48 0.0016 19.1 0.5 11 32-42 33-43 (66)
5 2lqv_A Protein YEBF; secretion 17.4 41 0.0014 21.3 0.0 50 29-88 25-76 (105)
6 2bn8_A CEDA, cell division act 11.9 1.1E+02 0.0038 18.1 1.6 12 110-121 38-49 (87)
7 3k94_A Thiamin pyrophosphokina 10.8 92 0.0031 22.0 1.2 20 29-48 160-179 (223)
8 2h7a_A Hypothetical protein YC 10.2 1.4E+02 0.0047 19.0 1.8 11 99-109 51-61 (110)
9 3s4y_A Thiamin pyrophosphokina 9.6 1E+02 0.0035 22.1 1.1 18 30-47 196-213 (247)
10 3o71_B Peptide of deleted in c 8.9 1.3E+02 0.0043 14.1 0.9 8 111-118 10-17 (27)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.91 E-value=1.6e-25 Score=206.56 Aligned_cols=107 Identities=14% Similarity=0.250 Sum_probs=76.1
Q ss_pred CcccceEEEe-EEEEEeccCcCCCCCCceEEcceEEEeeeEeCCCCeeeecCCccccccCCeEEEEeeeccccC---CCC
Q psy1736 1 MTIPIDHLTF-DFVVLQINKSESPPEDGVYCYGLFLDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVELQ---IGS 76 (125)
Q Consensus 1 ~~~sld~l~~-~~~v~~~~~~~~~~~~G~~v~GL~LeGA~Wd~~~~~L~e~~~~~l~~~lPvi~l~~~~~~~~~---~~~ 76 (125)
++||||+|.| +++|++.+. .|++|+||+|||||||+||...+++.|+. +++||++|++|+...... ..+
T Consensus 3127 ~~~plD~l~l~~~~V~~~~~---~p~~G~yI~GL~LeGA~WD~~~~~l~e~~----~~~lPvi~l~~~~~~~~~~~~~~~ 3199 (3245)
T 3vkg_A 3127 NGWSLENLRLHASSLGKISS---EGGASFNVKGMALEGAVWNNDQLTPTDIL----STPISIATLTWKDKDDPIFNNSSS 3199 (3245)
T ss_dssp TC------CCCBC-------------CCEEECSCEEESCEECSSSEECCSSS----EEECCCEEECCCC---CCTTSGGG
T ss_pred hCCCCccceeeeEEEecCCC---CCCceEEEeCEEEeccEecCCCceecCcc----cCCCCceeEEEeecccccccCCCC
Confidence 5799999999 999976432 27899999999999999999988888765 788999999998764332 356
Q ss_pred eEEeeeeeeeeeCCcccCCCCcccEEEEEEecC--CCCCCeEEeeceeec
Q psy1736 77 RYVCPLYKTSERRGTLSTTGHSTNYVIPLLLNT--GLPSSHWKNKCGQVG 124 (125)
Q Consensus 77 ~y~cPvY~~~~R~~~l~t~g~s~n~v~~v~L~~--~~~~~~Wi~rgval~ 124 (125)
.|.||||+|+.|++ +|+++.||+ +.+++|||+|||||+
T Consensus 3200 ~y~cPvYkt~~R~~----------~l~~~~l~~~t~~~~~~Wi~rGVALl 3239 (3245)
T 3vkg_A 3200 KLSVPVYLNETRSE----------LLFSIDLPYDQSTSKQNWYQRSVSIS 3239 (3245)
T ss_dssp EEEEEEESSTTCCC----------EEEEEEEEBCTTSCHHHHHTTTCEEE
T ss_pred eEEcceEecCCCCC----------EEEEEEEECCCCCCHhHHHHHHHHHH
Confidence 89999999999986 666666665 689999999999985
No 2
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=22.49 E-value=26 Score=26.58 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=13.3
Q ss_pred EEcceEEEeeeEeCCCCe
Q psy1736 29 YCYGLFLDGARWDRTSNQ 46 (125)
Q Consensus 29 ~v~GL~LeGA~Wd~~~~~ 46 (125)
-..++|-||++||.+.+.
T Consensus 9 ~~~~~yPE~~~wd~~~g~ 26 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQV 26 (334)
T ss_dssp CCTTCCCSCEEEETTTTE
T ss_pred cCcccCCcCccCcCCCCE
Confidence 346788999999975544
No 3
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=14.62 E-value=1.6e+02 Score=19.34 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.5
Q ss_pred CCCcccEEEEEEecCCCCCCeEEe
Q psy1736 95 TGHSTNYVIPLLLNTGLPSSHWKN 118 (125)
Q Consensus 95 ~g~s~n~v~~v~L~~~~~~~~Wi~ 118 (125)
.|++.|++++=+++-+-++.-||-
T Consensus 46 iG~~q~lvI~WDIKEev~a~DWIG 69 (138)
T 2lfe_A 46 LGQAQNLIIFWDIKEEVDPSDWIG 69 (138)
T ss_dssp TTCSCCEEEEEECCSCCCTTCEEE
T ss_pred ecCCCcEEEEEeccCccCccceEE
Confidence 367778999999988778888883
No 4
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=14.31 E-value=48 Score=19.06 Aligned_cols=11 Identities=18% Similarity=0.963 Sum_probs=8.6
Q ss_pred ceEEEeeeEeC
Q psy1736 32 GLFLDGARWDR 42 (125)
Q Consensus 32 GL~LeGA~Wd~ 42 (125)
+.-+||+.||.
T Consensus 33 aVLFEGGnWDK 43 (66)
T 2jz2_A 33 AVLFENGNWDK 43 (66)
T ss_dssp EEEEESSSCEE
T ss_pred EEEecCCCcee
Confidence 34689999994
No 5
>2lqv_A Protein YEBF; secretion, protein transport; NMR {Escherichia coli}
Probab=17.45 E-value=41 Score=21.29 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=29.3
Q ss_pred EEcceEEEe--eeEeCCCCeeeecCCccccccCCeEEEEeeeccccCCCCeEEeeeeeeeee
Q psy1736 29 YCYGLFLDG--ARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVELQIGSRYVCPLYKTSER 88 (125)
Q Consensus 29 ~v~GL~LeG--A~Wd~~~~~L~e~~~~~l~~~lPvi~l~~~~~~~~~~~~~y~cPvY~~~~R 88 (125)
.|.-=||+. .+|+..+..|- ..-|++|+..... ....+.|..|+=-.-.+
T Consensus 25 ~VKrDflQNRI~RW~~Dkk~LG--------t~~PV~Wvn~~~i--t~~~~~~~VPltVRG~k 76 (105)
T 2lqv_A 25 SVKRDYQQNRVARWADDQKIVG--------QADPVAWVSLQDI--QGKDDKWSVPLTVRGKS 76 (105)
Confidence 344445553 48887764443 2348888876442 23567788887544333
No 6
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=11.92 E-value=1.1e+02 Score=18.07 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=9.1
Q ss_pred CCCCCeEEeece
Q psy1736 110 GLPSSHWKNKCG 121 (125)
Q Consensus 110 ~~~~~~Wi~rgv 121 (125)
+.-.+.|++||-
T Consensus 38 d~frdvw~lrgk 49 (87)
T 2bn8_A 38 DSFRDVWMLRGK 49 (87)
T ss_dssp TTCTTEEEETTE
T ss_pred ccchhheeeccc
Confidence 445688999984
No 7
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=10.75 E-value=92 Score=21.96 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=15.6
Q ss_pred EEcceEEEeeeEeCCCCeee
Q psy1736 29 YCYGLFLDGARWDRTSNQLA 48 (125)
Q Consensus 29 ~v~GL~LeGA~Wd~~~~~L~ 48 (125)
-+.|+.++|++|+.....+.
T Consensus 160 ~~~~lt~~Glky~L~~~~l~ 179 (223)
T 3k94_A 160 TVAEFTLTGFKYPLTNCHIS 179 (223)
T ss_dssp EEEEEEEESBSSCCCSEEEE
T ss_pred ceeEEEEeccEEECCCCeec
Confidence 35689999999998865554
No 8
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=10.25 E-value=1.4e+02 Score=18.98 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=6.6
Q ss_pred ccEEEEEEecC
Q psy1736 99 TNYVIPLLLNT 109 (125)
Q Consensus 99 ~n~v~~v~L~~ 109 (125)
..||+.+.|..
T Consensus 51 p~~vM~l~L~~ 61 (110)
T 2h7a_A 51 PQLAMILPLDG 61 (110)
T ss_dssp EEEEEEECSSS
T ss_pred CcEEEEEecCC
Confidence 35666666643
No 9
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=9.62 E-value=1e+02 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=14.4
Q ss_pred EcceEEEeeeEeCCCCee
Q psy1736 30 CYGLFLDGARWDRTSNQL 47 (125)
Q Consensus 30 v~GL~LeGA~Wd~~~~~L 47 (125)
+.|+.++|++|+.....+
T Consensus 196 ~~~lt~~Glky~L~~~~l 213 (247)
T 3s4y_A 196 CMQVTTTGLKWNLTNDVL 213 (247)
T ss_dssp EEEEEEESBSSCCSSEEE
T ss_pred eeEEEEeccEEECCCCee
Confidence 468999999999876554
No 10
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=8.86 E-value=1.3e+02 Score=14.07 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=6.1
Q ss_pred CCCCeEEe
Q psy1736 111 LPSSHWKN 118 (125)
Q Consensus 111 ~~~~~Wi~ 118 (125)
.+|+-||-
T Consensus 10 kppdlwih 17 (27)
T 3o71_B 10 RPPDLWIH 17 (27)
T ss_pred CCcceeee
Confidence 47889985
Done!