RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1736
         (125 letters)



>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score =  120 bits (302), Expect = 5e-33
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 11/116 (9%)

Query: 1    MTIPIDHLTFDFVVLQINKSESPPEDGVYCYGLFLDGARWDRTSNQLAEQFPKVLNDALP 60
                +++L      L   K  S         G+ L+GA W+       +     +     
Sbjct: 3127 NGWSLENLRLHASSL--GKISSEGGASFNVKGMALEGAVWNNDQLTPTDILSTPI-SIAT 3183

Query: 61   IIWFVPTKKVELQIGSRYVCPLYKTSERRGTLSTTGHSTNYVIPLLLNTGLPSSHW 116
            + W      +     S+   P+Y    R   L        + I L  +      +W
Sbjct: 3184 LTWKDKDDPIFNNSSSKLSVPVYLNETRSELL--------FSIDLPYDQSTSKQNW 3231


>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
           center for structu genomics, MCSG, glycosyl hydrolases
           family 18; 2.60A {Klebsiella pneumoniae subsp}
          Length = 420

 Score = 27.0 bits (60), Expect = 1.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 81  PLYKTSERRGTLSTTGHSTNYVIPLLLNTGLPSS 114
            LY +S      +   +S ++V+   L  GL  S
Sbjct: 237 NLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPS 270


>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR
          {Homo sapiens}
          Length = 71

 Score = 25.5 bits (55), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 50 QFPKVLNDALPIIWFVPTKKVELQIGSR-YVCPLYKTSERR 89
          Q+ +VL+ A P+ W V TK  +     + +V P Y     +
Sbjct: 30 QYVEVLDAAHPLRWLVRTKPTKSSPSRQGWVSPAYLDRRLK 70


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 2.7
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 45  NQLAEQFPKVLNDALPIIWFV--PTKKVELQIGSRYVCPLYKTSERRGTLSTTGHSTNYV 102
           +QL EQF K+L +          PT   EL    +++   Y +S       +     + V
Sbjct: 31  SQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKFLG--YVSSLVE---PSKVGQFDQV 83

Query: 103 IPLLLN 108
           + L L 
Sbjct: 84  LNLCLT 89


>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation,
          UB1 conjugation pathway, RWD domain, alpha+beta
          sandwich fold, structural genomics; NMR {Homo sapiens}
          SCOP: d.20.1.3 PDB: 2dmf_A
          Length = 128

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 10/58 (17%), Positives = 18/58 (31%)

Query: 11 DFVVLQINKSESPPEDGVYCYGLFLDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTK 68
          +  V++ N   SP E  +  +    +          L  Q P      +P I     +
Sbjct: 27 ELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR 84


>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded
          beta-helix, OB fold, pseudohexamer, T4 tail HUB,
          GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A
          1k28_A 1pdl_A
          Length = 584

 Score = 25.1 bits (53), Expect = 8.2
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)

Query: 3  IPIDHLTFDFVVLQIN--------KSESPPEDGVYCYGLFLDGAR 39
          IP + L +  V+  I          S + P +G   YG FLD  +
Sbjct: 47 IPTEKLPWMSVIQPITSAAMSGIGGSVTGPVEGTRVYGHFLDKWK 91


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,905,513
Number of extensions: 94838
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)