RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1736
         (125 letters)



>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
          fulgidus [TaxId: 2234]}
          Length = 201

 Score = 27.2 bits (59), Expect = 0.44
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 23 PPEDGVYCYGL--FLDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTKK 69
          P  +GV C G     DGA       +  E   + + +   ++ F  T++
Sbjct: 3  PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRR 51


>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
           [TaxId: 1831]}
          Length = 291

 Score = 23.7 bits (49), Expect = 8.9
 Identities = 10/109 (9%), Positives = 25/109 (22%), Gaps = 3/109 (2%)

Query: 15  LQINKSESPPEDG---VYCYGLFLDGARWDRTSNQLAEQFPKVLNDALPIIWFVPTKKVE 71
            +++  +  P DG   ++ +G       W      +A     +  D + +          
Sbjct: 17  ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 76

Query: 72  LQIGSRYVCPLYKTSERRGTLSTTGHSTNYVIPLLLNTGLPSSHWKNKC 120
                      +  +     +    H     +        P       C
Sbjct: 77  FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIAC 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,399
Number of extensions: 19405
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)