BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17360
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 31 LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMY 90
L D T +GV FKAHK +LAACS++F+ LF ++ LD +++ + +LEFMY
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----QKDVVHLDISNAAGLGQVLEFMY 80
Query: 91 KGEVHVSQESLSGFLKAAESLQL 113
++ +S E++ L A LQ+
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQM 103
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 31 LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMY 90
L D T +GV FKAHK +LAACS++F+ LF ++ LD +++ + +LEFMY
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF----VDQKDVVHLDISNAAGLGQVLEFMY 82
Query: 91 KGEVHVSQESLSGFLKAAESLQL 113
++ +S E++ L A LQ+
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQM 105
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 31 LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILII-LDGTSSGNMSALLEFM 89
L DV + EG F H+ +LAACS++F+ LF + + +D S+ ++AL++F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 90 YKGEVHVSQESLSGFLKAAESLQL 113
Y + VS ++ L AA L++
Sbjct: 85 YTATLTVSTANVGDILSAARLLEI 108
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 31 LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILII-LDGTSSGNMSALLEFM 89
L DV + EG F H+ +LAACS++F+ LF + + +D S+ ++AL++F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 90 YKGEVHVSQESLSGFLKAAESLQL 113
Y + VS ++ L AA L++
Sbjct: 95 YTATLTVSTANVGDILSAARLLEI 118
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 27 KSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALL 86
K + L DVTL E F+AH+ +LAACS++F ++ + + ++ LL
Sbjct: 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLL 87
Query: 87 EFMYKGEVHVSQESLSGFLKAAESLQL 113
+F Y ++ +S+E++ ++ AE L++
Sbjct: 88 QFAYTAKLLLSRENIREVIRCAEFLRM 114
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 7 FCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQD-LFEAAP 65
F + S N++ + K + L DVT+F EG F+AH+ +LAACS +F + A
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD 64
Query: 66 FCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
NI + + T G L++F Y ++ +S+E++ K E L +
Sbjct: 65 GELNITLPEEVTVKG-FEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 8 CLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFC 67
C++++ ++++ L + LTDV + F+AHK +L ACS F +F C
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKC 68
Query: 68 PNILIILDG-TSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+I LD + LL+FMY +++ + ++ + A LQ+
Sbjct: 69 NLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQM 115
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%)
Query: 7 FCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF 66
F + S N++ + K + L DVT+ EG F+AH+ +LAACS +F
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD 71
Query: 67 CPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ + + + L++F Y ++ +S++++ + E L +
Sbjct: 72 AELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 2 DPQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLF 61
D Q QF + ++++ L + LTDV + F+AHK +L ACS F +F
Sbjct: 4 DSQIQF----TRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIF 59
Query: 62 EAAPFCPNILII-LDG-TSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
N+ +I LD + + LL+FMY +++ + ++ + A LQ+
Sbjct: 60 -TDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 5 QQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAA 64
Q ++ +FGN+++ DV++ +G FKAH+ +LAA S +F+DLF +
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66
Query: 65 PFCPNILIILDGTSSGNMSALLEFMYKGE--VHVSQESL----SGFLKAAESLQ 112
++ + + +L F Y G ++V + L +GFL+ E ++
Sbjct: 67 R--SAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIME 118
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKG 92
D TL G+ FKAH +LA CS FQ L+ ++L + LL+F Y G
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDG---SGGSVVLPAGFAEIFGLLLDFFYTG 82
Query: 93 EVHVSQESLSGFLKAAESLQL 113
+ ++ + L AA L++
Sbjct: 83 HLALTSGNRDQVLLAARELRV 103
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 30 SLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFM 89
+L DV + + F AH+ +LA SK F+ LF + LD S +LE+
Sbjct: 27 TLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLSPKTFQQILEYA 82
Query: 90 YKGEVHVSQESLSGFLKAA 108
Y + E L L AA
Sbjct: 83 YTATLQAKAEDLDDLLYAA 101
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 30 SLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFM 89
+L DV + + F AH+ +LA SK F+ LF + LD S +LE+
Sbjct: 26 TLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLSPKTFQQILEYA 81
Query: 90 YKGEVHVSQESLSGFLKAA 108
Y + E L L AA
Sbjct: 82 YTATLQAKAEDLDDLLYAA 100
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAA 64
DVT+ E F+AHK IL+A S +F LF A
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA 66
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAA 64
DVT+ E F+AHK IL+A S +F LF A
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA 64
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKG 92
D TL G+ FKAH +LA CS FQ ++ ++L + LL+F Y G
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDG---TGGSVVLPAGFAEIFGLLLDFFYTG 83
Query: 93 EVHVSQESLSGFLKAAESLQL 113
+ ++ + L AA+ L++
Sbjct: 84 HLALTSGNRDQVLLAAKELRV 104
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 31 LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMY 90
L D T+ FKAH+ +LA+ S++F ++ + N+ + + LLEF+Y
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSE-NNVFLDQSQVKADGFQKLLEFIY 80
Query: 91 KGEVHVSQESLSGFLKAAESLQL 113
G +++ ++ +AA+ L++
Sbjct: 81 TGTLNLDSWNVKEIHQAADYLKV 103
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 40 GVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILD--------GTSSGNMSALLEFMYK 91
G F+AH+ +LAA +++F L + F + ++ G + A++E+MY
Sbjct: 62 GREFRAHRSVLAAATEYFTPLL-SGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT 120
Query: 92 GEVHVSQESLSGFLKAAESLQLL 114
G + VS S+ L+ A+ L+
Sbjct: 121 GRIRVSTGSVHEVLELADRFLLI 143
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 26 FKSES-LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPN---ILIILDGTSSGN 81
F+ ES D L +G K ILAA S + + P + I L+G S
Sbjct: 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMV 100
Query: 82 MSALLEFMYKGEVHVSQESLSGFLKAA 108
M +L++++ G++ ++++++ ++AA
Sbjct: 101 MREILDYIFSGQIRLNEDTIQDVVQAA 127
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 40 GVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILD--------GTSSGNMSALLEFMYK 91
G F+AH+ +LAA +++F L + F + ++ G + A++E+ Y
Sbjct: 44 GREFRAHRSVLAAATEYFTPLL-SGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYT 102
Query: 92 GEVHVSQESLSGFLKAAESLQLL 114
G + VS S+ L+ A+ L+
Sbjct: 103 GRIRVSTGSVHEVLELADRFLLI 125
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 15 GNNLVTTFET--------LFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFE 62
G+N+V E L+++ TD L G F+AHK ILAA S F +FE
Sbjct: 1 GSNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 25 LFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFE 62
L+++ TD L G F+AHK ILAA S F +FE
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 26 FKSES-LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPN---ILIILDGTSSGN 81
F+ ES D L +G K ILAA S + + P + I L+G S
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 82 MSALLEFMYKGEVHVSQESLSGFLKAA 108
+L++++ G++ ++++++ ++AA
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 26 FKSES-LTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPN---ILIILDGTSSGN 81
F+ ES D L +G K ILAA S + + P + I L+G S
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 82 MSALLEFMYKGEVHVSQESLSGFLKAA 108
+L++++ G++ ++++++ ++AA
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 25 LFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFE 62
L+++ TD L G F+AHK ILAA S F FE
Sbjct: 28 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFE 65
>pdb|2YV6|A Chain A, Crystal Structure Of Human Bcl-2 Family Protein Bak
Length = 163
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 76 GTSSGNMSALLEFMYKGEVHVSQESLSGFL 105
G + G + ALL F Y+ +HV Q L+GFL
Sbjct: 100 GINWGRVVALLGFGYRLALHVYQHGLTGFL 129
>pdb|2IMT|A Chain A, The X-Ray Structure Of A Bak Homodimer Reveals An
Inhibitory Zinc Binding Site
Length = 171
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 76 GTSSGNMSALLEFMYKGEVHVSQESLSGFL 105
G + G + ALL F Y+ +HV Q L+GFL
Sbjct: 107 GINWGRVVALLGFGYRLALHVYQHGLTGFL 136
>pdb|2IMS|A Chain A, The X-Ray Structure Of A Bak Homodimer Reveals An
Inhibitory Zinc Binding Site
Length = 171
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 76 GTSSGNMSALLEFMYKGEVHVSQESLSGFL 105
G + G + ALL F Y+ +HV Q L+GFL
Sbjct: 107 GINWGRVVALLGFGYRLALHVYQHGLTGFL 136
>pdb|2JCN|A Chain A, The Crystal Structure Of Bak1 - A Mitochondrial Apoptosis
Regulator
Length = 172
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 76 GTSSGNMSALLEFMYKGEVHVSQESLSGFL 105
G + G + ALL F Y+ +HV Q L+GFL
Sbjct: 104 GINWGRVVALLGFGYRLALHVYQHGLTGFL 133
>pdb|3NWG|A Chain A, The Crystal Structure Of A Microcomparments Protein From
Desulfitobacterium Hafniense Dcb
Length = 182
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 59 DLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFL 105
DL EA P CP I+L G+++A+ + G+ + L F+
Sbjct: 30 DLLEAKPVCPGKYIVL---ICGDVAAVQSSVTAGKTXAAHSVLDDFI 73
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 26/91 (28%)
Query: 37 FCEGVTFKAHKIILAACSKHF-------QDLFEAAPFCPNILIILDGTSSGNMSALLEFM 89
F G+ F A K +AAC+KHF + E N +I +G + +M A M
Sbjct: 188 FTSGMPFVAGKNKVAACAKHFVGDGGTVDGINEN-----NTIINREGLMNIHMPAYKNAM 242
Query: 90 YKG--------------EVHVSQESLSGFLK 106
KG ++H +Q+ ++G+LK
Sbjct: 243 DKGVSTVMISYSSWNGVKMHANQDLVTGYLK 273
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 26/91 (28%)
Query: 37 FCEGVTFKAHKIILAACSKHF-------QDLFEAAPFCPNILIILDGTSSGNMSALLEFM 89
F G+ F A K +AAC+KHF + E N +I +G + +M A M
Sbjct: 188 FTSGMPFVAGKNKVAACAKHFVGDGGTVDGINEN-----NTIINREGLMNIHMPAYKNAM 242
Query: 90 YKG--------------EVHVSQESLSGFLK 106
KG ++H +Q+ ++G+LK
Sbjct: 243 DKGVSTVMISYSSWNGVKMHANQDLVTGYLK 273
>pdb|1JWJ|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(delta 65) With W457f Mutation At Tetrahydrobiopterin
Binding Site
pdb|1JWJ|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(delta 65) With W457f Mutation At Tetrahydrobiopterin
Binding Site
Length = 433
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 21 TFETLFKSESLTDVTLFC------EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIIL 74
T +L+K ++T++ + + VT H + KH Q+ + A CP I L
Sbjct: 334 TLASLWKDRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIFL 393
Query: 75 DGTSSGNMSALL 86
SG+++ +
Sbjct: 394 VPPVSGSITPVF 405
>pdb|1JWK|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
pdb|1JWK|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
Length = 434
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 21 TFETLFKSESLTDVTLFC------EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIIL 74
T +L+K ++T++ + + VT H + KH Q+ + A CP I L
Sbjct: 335 TLASLWKDRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIAL 394
Query: 75 DGTSSGNMSALL 86
SG+++ +
Sbjct: 395 VPPVSGSITPVF 406
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 63 AAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSG 103
A+ C L++L ++ G S +L F+ KG+ H QES G
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFV-KGQFHEYQESTIG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,993,642
Number of Sequences: 62578
Number of extensions: 95854
Number of successful extensions: 216
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 35
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)