Query psy17360
Match_columns 115
No_of_seqs 155 out of 1161
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:24:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 4E-25 8.7E-30 164.7 8.9 102 11-114 5-109 (557)
2 KOG4441|consensus 99.9 1.5E-24 3.3E-29 161.8 8.5 106 9-114 14-120 (571)
3 PHA02790 Kelch-like protein; P 99.9 2.8E-23 6.1E-28 152.6 7.0 96 18-114 9-106 (480)
4 PF00651 BTB: BTB/POZ domain; 99.9 1.5E-22 3.3E-27 122.0 7.9 93 22-114 1-97 (111)
5 PHA03098 kelch-like protein; P 99.8 3.3E-21 7.1E-26 143.0 7.3 84 28-114 6-91 (534)
6 smart00225 BTB Broad-Complex, 99.8 2.7E-19 6E-24 103.0 7.3 82 33-114 1-83 (90)
7 KOG4350|consensus 99.8 1.3E-19 2.7E-24 128.4 5.4 100 15-114 28-131 (620)
8 KOG2075|consensus 99.6 4.7E-16 1E-20 111.8 7.2 107 8-114 91-203 (521)
9 KOG4591|consensus 99.6 3.8E-16 8.3E-21 101.9 4.4 101 12-114 47-152 (280)
10 KOG0783|consensus 99.1 1.4E-10 3.1E-15 88.7 7.1 77 17-93 544-633 (1267)
11 KOG4682|consensus 99.1 2.7E-10 5.9E-15 81.2 5.8 91 23-114 61-156 (488)
12 KOG2838|consensus 98.9 2.8E-09 6.1E-14 73.0 4.7 99 15-113 114-218 (401)
13 KOG0783|consensus 98.6 3.9E-08 8.4E-13 75.8 3.0 79 33-111 712-798 (1267)
14 KOG2716|consensus 98.3 1.9E-06 4.1E-11 58.1 6.1 80 34-114 7-91 (230)
15 PF02214 BTB_2: BTB/POZ domain 98.3 8E-07 1.7E-11 52.0 3.0 80 34-114 1-87 (94)
16 smart00512 Skp1 Found in Skp1 98.1 2.1E-05 4.6E-10 46.9 6.4 79 34-113 4-104 (104)
17 KOG2838|consensus 97.9 5.6E-06 1.2E-10 57.1 2.4 81 16-96 220-328 (401)
18 KOG0511|consensus 97.9 4.3E-06 9.3E-11 59.9 1.6 72 41-113 301-377 (516)
19 KOG3473|consensus 97.7 0.00023 4.9E-09 41.7 6.4 79 34-113 19-112 (112)
20 PF03931 Skp1_POZ: Skp1 family 97.6 0.00047 1E-08 37.3 6.5 55 34-90 3-58 (62)
21 KOG2714|consensus 97.6 0.00018 4E-09 52.3 5.9 80 34-114 13-98 (465)
22 KOG0511|consensus 97.2 6.5E-05 1.4E-09 54.0 -0.2 92 21-113 136-231 (516)
23 KOG1665|consensus 96.9 0.0028 6E-08 42.9 5.4 80 34-113 11-96 (302)
24 KOG2715|consensus 95.5 0.036 7.8E-07 35.9 4.5 83 32-114 21-108 (210)
25 KOG3840|consensus 95.5 0.048 1E-06 38.7 5.5 82 33-115 97-186 (438)
26 KOG1724|consensus 95.1 0.058 1.3E-06 34.8 4.5 76 38-114 12-113 (162)
27 KOG1987|consensus 94.8 0.01 2.2E-07 41.4 0.5 54 40-93 109-163 (297)
28 PF11822 DUF3342: Domain of un 94.2 0.042 9.2E-07 39.0 2.5 73 41-114 14-90 (317)
29 KOG2723|consensus 91.5 0.84 1.8E-05 31.0 5.6 83 31-114 7-96 (221)
30 COG5201 SKP1 SCF ubiquitin lig 86.8 2.4 5.2E-05 26.5 4.7 76 37-114 8-108 (158)
31 KOG3713|consensus 85.1 7 0.00015 29.6 7.2 81 33-114 32-125 (477)
32 PF09593 Pathogen_betaC1: Beta 82.2 4.1 9E-05 24.9 4.3 55 39-93 20-76 (117)
33 PF05225 HTH_psq: helix-turn-h 55.6 7.9 0.00017 19.2 1.2 27 80-114 3-29 (45)
34 PF01466 Skp1: Skp1 family, di 54.6 8.5 0.00018 21.4 1.3 20 95-114 10-29 (78)
35 KOG4390|consensus 48.0 30 0.00065 26.0 3.5 62 34-98 42-107 (632)
36 PF06200 tify: tify domain; I 45.5 16 0.00035 17.4 1.3 22 88-109 10-35 (36)
37 PF06404 PSK: Phytosulfokine p 41.2 9.3 0.0002 21.8 0.1 12 82-93 67-78 (81)
38 KOG3342|consensus 40.0 14 0.00031 23.8 0.8 16 34-49 84-100 (180)
39 COG1576 Uncharacterized conser 38.1 56 0.0012 21.1 3.2 24 15-40 82-105 (155)
40 KOG1778|consensus 36.9 11 0.00025 27.1 -0.0 57 36-92 31-88 (319)
41 PF10905 DUF2695: Protein of u 36.6 43 0.00094 17.4 2.2 19 20-38 34-52 (53)
42 PF02519 Auxin_inducible: Auxi 31.9 1.1E+02 0.0025 18.0 4.2 53 34-89 41-99 (100)
43 PF07498 Rho_N: Rho terminatio 30.6 23 0.00051 17.3 0.5 17 98-114 4-20 (43)
44 PF12926 MOZART2: Mitotic-spin 30.4 74 0.0016 18.5 2.6 28 76-106 40-67 (88)
45 PRK09738 small toxic polypepti 28.0 98 0.0021 16.1 3.1 22 25-46 24-45 (52)
46 cd00758 MoCF_BD MoCF_BD: molyb 27.2 1.1E+02 0.0023 18.7 3.2 27 12-41 42-68 (133)
47 COG1531 Uncharacterized protei 26.8 65 0.0014 18.2 1.9 16 35-50 48-63 (77)
48 PRK14715 DNA polymerase II lar 25.7 3.1E+02 0.0067 24.5 6.2 87 4-93 1137-1225(1627)
49 KOG3863|consensus 25.1 11 0.00024 29.5 -1.8 37 22-63 5-41 (604)
50 cd00014 CH Calponin homology d 24.6 1.4E+02 0.0029 16.9 3.2 36 79-114 32-77 (107)
51 COG3040 Blc Bacterial lipocali 23.7 65 0.0014 21.1 1.8 28 88-115 136-163 (174)
52 PF01848 HOK_GEF: Hok/gef fami 23.2 1.1E+02 0.0025 15.1 3.2 22 25-46 19-40 (43)
53 PF00356 LacI: Bacterial regul 22.7 1.2E+02 0.0025 15.1 3.4 33 77-113 11-43 (46)
54 COG0350 Ada Methylated DNA-pro 21.8 38 0.00083 21.9 0.5 12 42-53 136-147 (168)
55 PF11116 DUF2624: Protein of u 21.0 94 0.002 17.9 1.9 19 97-115 13-31 (85)
56 PRK09759 small toxic polypepti 20.1 1.5E+02 0.0032 15.3 3.2 22 25-46 22-43 (50)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=4e-25 Score=164.69 Aligned_cols=102 Identities=25% Similarity=0.349 Sum_probs=94.7
Q ss_pred eCCchHHHHHHHHHHhhcCCeeeEEEEEC-CeEEeeehhehhccCHHHHHhhccCCCCC--CeeEEcCCCCHHHHHHhhc
Q psy17360 11 WSSFGNNLVTTFETLFKSESLTDVTLFCE-GVTFKAHKIILAACSKHFQDLFEAAPFCP--NILIILDGTSSGNMSALLE 87 (115)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~-~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~ 87 (115)
.+.|...+++.|+++|.++.+|||+|.++ |+.|+|||.|||++|+||++||.+++.+. +..|.+.++++++++.+|+
T Consensus 5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~ 84 (557)
T PHA02713 5 DIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQ 84 (557)
T ss_pred hhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHH
Confidence 46889999999999999999999999998 89999999999999999999999987753 4689999999999999999
Q ss_pred hhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 88 FMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 88 ~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+|||+ ++.+++++++.+|++|+++
T Consensus 85 y~Yt~~--i~~~nv~~ll~aA~~lqi~ 109 (557)
T PHA02713 85 YLYNRH--ISSMNVIDVLKCADYLLID 109 (557)
T ss_pred HhcCCC--CCHHHHHHHHHHHHHHCHH
Confidence 999997 6889999999999999985
No 2
>KOG4441|consensus
Probab=99.91 E-value=1.5e-24 Score=161.76 Aligned_cols=106 Identities=29% Similarity=0.476 Sum_probs=100.2
Q ss_pred EEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhc
Q psy17360 9 LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLE 87 (115)
Q Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~ 87 (115)
+..+.|...+++.|+.+|+.+.+|||++.++++.|+|||.|||++|+||++||.+...+. +.+|.+.++++..++.+++
T Consensus 14 ~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~ 93 (571)
T KOG4441|consen 14 FTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLD 93 (571)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHH
Confidence 445789999999999999999999999999999999999999999999999999887776 5589999999999999999
Q ss_pred hhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 88 FMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 88 ~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+|||++.++.+++++++.+|++|||+
T Consensus 94 y~Yt~~i~i~~~nVq~ll~aA~~lQi~ 120 (571)
T KOG4441|consen 94 YAYTGKLEISEDNVQELLEAASLLQIP 120 (571)
T ss_pred HhhcceEEechHhHHHHHHHHHHhhhH
Confidence 999999999999999999999999975
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=152.61 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEc--CCCCHHHHHHhhchhhCCccc
Q psy17360 18 LVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIIL--DGTSSGNMSALLEFMYKGEVH 95 (115)
Q Consensus 18 l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Ytg~~~ 95 (115)
..+.+-.++..+.+|||++.+| +.|+|||.|||++|+||++||.+++.+++..+.+ .++++++++.+|+|+|||++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 3456777889999999887766 5999999999999999999999988776554544 489999999999999999999
Q ss_pred cChhcHHHHHHHHhhcCcc
Q psy17360 96 VSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 96 ~~~~~~~~ll~~a~~l~i~ 114 (115)
++.+|+++++.+|++||++
T Consensus 88 it~~nV~~ll~aA~~Lqi~ 106 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVE 106 (480)
T ss_pred EecccHHHHHHHHHHhChH
Confidence 9999999999999999975
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.88 E-value=1.5e-22 Score=121.99 Aligned_cols=93 Identities=38% Similarity=0.549 Sum_probs=82.4
Q ss_pred HHHHhhcCCeeeEEEEEC-CeEEeeehhehhccCHHHHHhhccC-CCCCC-eeEEcCCCCHHHHHHhhchhhCCccccC-
Q psy17360 22 FETLFKSESLTDVTLFCE-GVTFKAHKIILAACSKHFQDLFEAA-PFCPN-ILIILDGTSSGNMSALLEFMYKGEVHVS- 97 (115)
Q Consensus 22 l~~~~~~~~~~Dv~l~~~-~~~~~~Hr~vL~~~S~~f~~~~~~~-~~~~~-~~i~~~~~~~~~~~~~l~~~Ytg~~~~~- 97 (115)
|+++++++.++|+++.++ ++.|+|||.+|+++|+||+.+|.+. ..+.. ..+.+++++++.|+.+++|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 578899999999999999 7999999999999999999999987 34443 4789999999999999999999999998
Q ss_pred hhcHHHHHHHHhhcCcc
Q psy17360 98 QESLSGFLKAAESLQLL 114 (115)
Q Consensus 98 ~~~~~~ll~~a~~l~i~ 114 (115)
.+++.+++.+|++|+++
T Consensus 81 ~~~~~~ll~lA~~~~~~ 97 (111)
T PF00651_consen 81 DENVEELLELADKLQIP 97 (111)
T ss_dssp TTTHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHHHHhCcH
Confidence 99999999999999986
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.84 E-value=3.3e-21 Score=143.01 Aligned_cols=84 Identities=21% Similarity=0.399 Sum_probs=79.3
Q ss_pred cCCeeeEEEEE--CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCccccChhcHHHHH
Q psy17360 28 SESLTDVTLFC--EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFL 105 (115)
Q Consensus 28 ~~~~~Dv~l~~--~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll 105 (115)
++.+|||++.+ +|+.|+|||.||+++|+||++||.+++. +..|.+++ ++++|+.+|+|+|||++.++.+++.+++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll 82 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDIL 82 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHH
Confidence 88999999998 9999999999999999999999998776 55788888 9999999999999999999999999999
Q ss_pred HHHhhcCcc
Q psy17360 106 KAAESLQLL 114 (115)
Q Consensus 106 ~~a~~l~i~ 114 (115)
.+|++|+++
T Consensus 83 ~~A~~l~~~ 91 (534)
T PHA03098 83 SIANYLIID 91 (534)
T ss_pred HHHHHhCcH
Confidence 999999986
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.80 E-value=2.7e-19 Score=103.00 Aligned_cols=82 Identities=41% Similarity=0.626 Sum_probs=75.4
Q ss_pred eEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchhhCCccccChhcHHHHHHHHhhc
Q psy17360 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESL 111 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l 111 (115)
|+++.++|+.|++||.+|+++|+||+.++.+.+.+. ...+.+++.++..|+.+++|+|+|++.+...++..++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999998766543 5578899999999999999999999999988999999999999
Q ss_pred Ccc
Q psy17360 112 QLL 114 (115)
Q Consensus 112 ~i~ 114 (115)
+++
T Consensus 81 ~~~ 83 (90)
T smart00225 81 QIP 83 (90)
T ss_pred CcH
Confidence 975
No 7
>KOG4350|consensus
Probab=99.79 E-value=1.3e-19 Score=128.40 Aligned_cols=100 Identities=34% Similarity=0.551 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchhhCCc
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFMYKGE 93 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~Ytg~ 93 (115)
...+.+.+..++-+.+.+||+|+++++.|+|||.|||+||.||++++-+++.++ +..|.+.+...++|+.+|+|||||+
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~ 107 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGK 107 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcc
Confidence 445578888899999999999999999999999999999999999999988877 5589999999999999999999999
Q ss_pred cccC---hhcHHHHHHHHhhcCcc
Q psy17360 94 VHVS---QESLSGFLKAAESLQLL 114 (115)
Q Consensus 94 ~~~~---~~~~~~ll~~a~~l~i~ 114 (115)
+.+. .+-..+.+.+|.+||++
T Consensus 108 ~~l~~~~ed~lld~LslAh~Ygf~ 131 (620)
T KOG4350|consen 108 IDLAGVEEDILLDYLSLAHRYGFI 131 (620)
T ss_pred eecccchHHHHHHHHHHHHhcCcH
Confidence 9864 45567899999999864
No 8
>KOG2075|consensus
Probab=99.65 E-value=4.7e-16 Score=111.80 Aligned_cols=107 Identities=24% Similarity=0.361 Sum_probs=98.4
Q ss_pred eEEeCCchHHHHHHHHHHhhcCCeeeEEEEECC-----eEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHH
Q psy17360 8 CLKWSSFGNNLVTTFETLFKSESLTDVTLFCEG-----VTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGN 81 (115)
Q Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~-----~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~ 81 (115)
-.+|.....++....-.++++...+|+.|++++ +.++|||.||+..|..|.+||.+++.+. ..+|.+|++.+..
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 346677778899999999999999999999973 7899999999999999999999988887 6799999999999
Q ss_pred HHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 82 MSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 82 ~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|..+|+|+|+.++.+..+++..++.+|++|-++
T Consensus 171 Fl~~L~flYsdev~~~~dtvi~tl~~AkKY~Vp 203 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVKLAADTVITTLYAAKKYLVP 203 (521)
T ss_pred hHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999765
No 9
>KOG4591|consensus
Probab=99.62 E-value=3.8e-16 Score=101.86 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHHHhhcCCeeeEEEEECC---eEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhch
Q psy17360 12 SSFGNNLVTTFETLFKSESLTDVTLFCEG---VTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEF 88 (115)
Q Consensus 12 ~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~---~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 88 (115)
..+.+.++.....+++.++++|++|.++| +.++|||+||++||++.+ |.++..+...+..+++.++++|...++|
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRW 124 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRW 124 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhhee
Confidence 46788888888999999999999999984 789999999999999876 4444445566788999999999999999
Q ss_pred hhCCccccChh--cHHHHHHHHhhcCcc
Q psy17360 89 MYKGEVHVSQE--SLSGFLKAAESLQLL 114 (115)
Q Consensus 89 ~Ytg~~~~~~~--~~~~ll~~a~~l~i~ 114 (115)
|||+++++..+ .+.++.++|+.|++.
T Consensus 125 IYTDEidfk~dD~~L~el~e~An~FqLe 152 (280)
T KOG4591|consen 125 IYTDEIDFKEDDEFLLELCELANRFQLE 152 (280)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHH
Confidence 99999998654 457899999988763
No 10
>KOG0783|consensus
Probab=99.14 E-value=1.4e-10 Score=88.67 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCC-------------CCeeEEcCCCCHHHHH
Q psy17360 17 NLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFC-------------PNILIILDGTSSGNMS 83 (115)
Q Consensus 17 ~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~-------------~~~~i~~~~~~~~~~~ 83 (115)
++..-+++--....+.||+|.||+..|+|||+||++||++|+.+|...... ....|.++++++..|+
T Consensus 544 sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe 623 (1267)
T KOG0783|consen 544 SFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFE 623 (1267)
T ss_pred hhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHH
Confidence 344444444445578899999999999999999999999999998753322 1235668899999999
Q ss_pred HhhchhhCCc
Q psy17360 84 ALLEFMYKGE 93 (115)
Q Consensus 84 ~~l~~~Ytg~ 93 (115)
.+|+|+||..
T Consensus 624 ~lL~~iYtdt 633 (1267)
T KOG0783|consen 624 ILLHYIYTDT 633 (1267)
T ss_pred HHHHHHhccc
Confidence 9999999974
No 11
>KOG4682|consensus
Probab=99.08 E-value=2.7e-10 Score=81.16 Aligned_cols=91 Identities=25% Similarity=0.279 Sum_probs=80.0
Q ss_pred HHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCe-----eEEcCCCCHHHHHHhhchhhCCccccC
Q psy17360 23 ETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNI-----LIILDGTSSGNMSALLEFMYKGEVHVS 97 (115)
Q Consensus 23 ~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~l~~~Ytg~~~~~ 97 (115)
..++.+|.-+||.+.+-|..++.|+.-|. .|+||++||.+.+.+++. +|.-|+++.+++..++.-+|..+++|+
T Consensus 61 q~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc
Confidence 45667889999999999999999999996 589999999998877633 333356999999999999999999999
Q ss_pred hhcHHHHHHHHhhcCcc
Q psy17360 98 QESLSGFLKAAESLQLL 114 (115)
Q Consensus 98 ~~~~~~ll~~a~~l~i~ 114 (115)
.+.+..++.+|.+++++
T Consensus 140 l~dv~gvlAaA~~lqld 156 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLD 156 (488)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 12
>KOG2838|consensus
Probab=98.88 E-value=2.8e-09 Score=72.98 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCC---eeEEcCCCCHHHHHHhhchhhC
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPN---ILIILDGTSSGNMSALLEFMYK 91 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l~~~Yt 91 (115)
..++++++...++.....|+-+....+.|+|||++|++|||+|+.+.....+... ..+..-.++.+.|+.+|+++|+
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t 193 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT 193 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence 4567777888887778889999999999999999999999999998876543222 1566778899999999999999
Q ss_pred Cccc---cChhcHHHHHHHHhhcCc
Q psy17360 92 GEVH---VSQESLSGFLKAAESLQL 113 (115)
Q Consensus 92 g~~~---~~~~~~~~ll~~a~~l~i 113 (115)
|+.- +..+++.-+.+++.-||.
T Consensus 194 gEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 194 GEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred cccchhhcCCchHHHHHHHHHhhCC
Confidence 9753 455667777777776664
No 13
>KOG0783|consensus
Probab=98.57 E-value=3.9e-08 Score=75.78 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=57.1
Q ss_pred eEEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCe-eEEcCCCCHHHHHHhhchhh-CCcccc-----ChhcHHHH
Q psy17360 33 DVTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNI-LIILDGTSSGNMSALLEFMY-KGEVHV-----SQESLSGF 104 (115)
Q Consensus 33 Dv~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~Y-tg~~~~-----~~~~~~~l 104 (115)
|+.+.. +|+.++||+++|++|..||..||...+.+... .+...-+..+.++.+|+|+| +.+..+ ..+.+.++
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~i 791 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEI 791 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHH
Confidence 444444 67889999999999999999999876655533 44444466999999999999 444443 22345667
Q ss_pred HHHHhhc
Q psy17360 105 LKAAESL 111 (115)
Q Consensus 105 l~~a~~l 111 (115)
+..||.|
T Consensus 792 l~iaDql 798 (1267)
T KOG0783|consen 792 LSIADQL 798 (1267)
T ss_pred HHHHHHH
Confidence 7777655
No 14
>KOG2716|consensus
Probab=98.33 E-value=1.9e-06 Score=58.06 Aligned_cols=80 Identities=28% Similarity=0.391 Sum_probs=66.0
Q ss_pred EEEEECCeEEeeehhehhccCHHHHHhhccCCCCC--C-eeEEcCCCCHHHHHHhhchhhCCcccc--ChhcHHHHHHHH
Q psy17360 34 VTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP--N-ILIILDGTSSGNMSALLEFMYKGEVHV--SQESLSGFLKAA 108 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~--~-~~i~~~~~~~~~~~~~l~~~Ytg~~~~--~~~~~~~ll~~a 108 (115)
+.+.|||+.|...+.-|.....+|+.|+++...-. . .-|.+ |-+|..|+.+|+||-.|.+.+ +..++.+|+.-|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 56889999999999999999999999999864311 2 23544 469999999999999998887 456788999999
Q ss_pred hhcCcc
Q psy17360 109 ESLQLL 114 (115)
Q Consensus 109 ~~l~i~ 114 (115)
.+|.++
T Consensus 86 ~fYlL~ 91 (230)
T KOG2716|consen 86 EFYLLD 91 (230)
T ss_pred HHhhHH
Confidence 999874
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.27 E-value=8e-07 Score=52.01 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=59.2
Q ss_pred EEEEECCeEEeeehhehh-ccCHHHHHhhccC----CCCCCeeEEcCCCCHHHHHHhhchhhC-CccccC-hhcHHHHHH
Q psy17360 34 VTLFCEGVTFKAHKIILA-ACSKHFQDLFEAA----PFCPNILIILDGTSSGNMSALLEFMYK-GEVHVS-QESLSGFLK 106 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~-~~S~~f~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~~Yt-g~~~~~-~~~~~~ll~ 106 (115)
|.|.|||+.|.+-+..|. ...++|..++... ....+..+.++ -+|..|+.||+|+.+ |.+..+ ......+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 4467888888753 11223456664 699999999999999 666653 567789999
Q ss_pred HHhhcCcc
Q psy17360 107 AAESLQLL 114 (115)
Q Consensus 107 ~a~~l~i~ 114 (115)
-|++|+++
T Consensus 80 Ea~fy~l~ 87 (94)
T PF02214_consen 80 EAEFYGLD 87 (94)
T ss_dssp HHHHHT-H
T ss_pred HHHHcCCC
Confidence 99999974
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=98.08 E-value=2.1e-05 Score=46.89 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=59.9
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCC--CeeEEcCCCCHHHHHHhhchhhCCc-----------c-----
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCP--NILIILDGTSSGNMSALLEFMYKGE-----------V----- 94 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~Ytg~-----------~----- 94 (115)
+++.. +|..|.+.+.+. ..|..++.++.+..... ...|.+++++...++.+++|++-.. +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44544 678999999976 57999999997643222 2479999999999999999996321 0
Q ss_pred ---ccChhcHHHHHHHHhhcCc
Q psy17360 95 ---HVSQESLSGFLKAAESLQL 113 (115)
Q Consensus 95 ---~~~~~~~~~ll~~a~~l~i 113 (115)
.++.+.+.+|+.||++|+|
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 1455678999999999986
No 17
>KOG2838|consensus
Probab=97.95 E-value=5.6e-06 Score=57.10 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCeeeEEEE-E-C--------------CeEEeeehhehhccCHHHHHhhccC----CCC------CC
Q psy17360 16 NNLVTTFETLFKSESLTDVTLF-C-E--------------GVTFKAHKIILAACSKHFQDLFEAA----PFC------PN 69 (115)
Q Consensus 16 ~~l~~~l~~~~~~~~~~Dv~l~-~-~--------------~~~~~~Hr~vL~~~S~~f~~~~~~~----~~~------~~ 69 (115)
.++-.+++.+++.....|+.++ + + +..++||+.|.++||++|+.++... .+. .+
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 3455566666665444444442 2 2 2469999999999999999998531 111 12
Q ss_pred eeEEcCC--CCHHHHHHhhchhhCCcccc
Q psy17360 70 ILIILDG--TSSGNMSALLEFMYKGEVHV 96 (115)
Q Consensus 70 ~~i~~~~--~~~~~~~~~l~~~Ytg~~~~ 96 (115)
..|.+++ ++..--..++.++||..+++
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDl 328 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDL 328 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccch
Confidence 3566665 35555567899999987654
No 18
>KOG0511|consensus
Probab=97.92 E-value=4.3e-06 Score=59.87 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=60.3
Q ss_pred eEEeeehhehhccCHHHHHhhccCCCCCC-----eeEEcCCCCHHHHHHhhchhhCCccccChhcHHHHHHHHhhcCc
Q psy17360 41 VTFKAHKIILAACSKHFQDLFEAAPFCPN-----ILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113 (115)
Q Consensus 41 ~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i 113 (115)
..++||+.++. |+.||+.||.++..++. ....+|+....+.+.+++|+|+.+.++..+-+.+++..|+++.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 56999999996 56799999998776532 25677888899999999999999999999888888888887754
No 19
>KOG3473|consensus
Probab=97.74 E-value=0.00023 Score=41.71 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=59.0
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCC---CeeEEcCCCCHHHHHHhhchh-----hCCc------cccCh
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCP---NILIILDGTSSGNMSALLEFM-----YKGE------VHVSQ 98 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~-----Ytg~------~~~~~ 98 (115)
|.++. +|..|-..|-+ |.-|+-+|+|+.++.... ..++.+++++...++.+.+|+ |++. .+|.+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44444 45666666554 456899999999754332 457999999999999999998 3443 45678
Q ss_pred hcHHHHHHHHhhcCc
Q psy17360 99 ESLSGFLKAAESLQL 113 (115)
Q Consensus 99 ~~~~~ll~~a~~l~i 113 (115)
+-+.+||.+|++|..
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 889999999999863
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.64 E-value=0.00047 Score=37.30 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=43.3
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhh
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMY 90 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y 90 (115)
++++. +|+.|.+.+.+.. .|..++.|+.+...... .|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHH
Confidence 44544 6789999988875 79999999986443333 79999999999999999996
No 21
>KOG2714|consensus
Probab=97.62 E-value=0.00018 Score=52.28 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=61.9
Q ss_pred EEEEECCeEEeeehhehhccC--HHHHHhhccCCCCCC---eeEEcCCCCHHHHHHhhchhhCCccccChhcHHHHHH-H
Q psy17360 34 VTLFCEGVTFKAHKIILAACS--KHFQDLFEAAPFCPN---ILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLK-A 107 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~S--~~f~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~-~ 107 (115)
|.|.|+|+.|.-.+.-|+... ++|.+++.+.+.... ..|.+ |-+|+.|..+|+|+-||+++++.-....++. -
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 678999999999999887765 788888876544332 23444 4699999999999999999997666555555 9
Q ss_pred HhhcCcc
Q psy17360 108 AESLQLL 114 (115)
Q Consensus 108 a~~l~i~ 114 (115)
|.+||+.
T Consensus 92 A~fYGl~ 98 (465)
T KOG2714|consen 92 AMFYGLT 98 (465)
T ss_pred hhhcCcH
Confidence 9999974
No 22
>KOG0511|consensus
Probab=97.24 E-value=6.5e-05 Score=54.00 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHHhhcC---CeeeEEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCcccc
Q psy17360 21 TFETLFKSE---SLTDVTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHV 96 (115)
Q Consensus 21 ~l~~~~~~~---~~~Dv~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~ 96 (115)
++..++++. ...|+++.. +|..|.||++.|+++|++|...+...+. +..+|.-..+-+..|..+++|+|-..-.+
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~-~~heI~~~~v~~~~f~~flk~lyl~~na~ 214 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV-QGHEIEAHRVILSAFSPFLKQLYLNTNAE 214 (516)
T ss_pred HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc-ccCchhhhhhhHhhhhHHHHHHHHhhhhh
Confidence 344444443 234777765 5678889999999999988765543221 23346556678899999999999764444
Q ss_pred ChhcHHHHHHHHhhcCc
Q psy17360 97 SQESLSGFLKAAESLQL 113 (115)
Q Consensus 97 ~~~~~~~ll~~a~~l~i 113 (115)
-.++...++.+..+|++
T Consensus 215 ~~~qynallsi~~kF~~ 231 (516)
T KOG0511|consen 215 WKDQYNALLSIEVKFSK 231 (516)
T ss_pred hhhHHHHHHhhhhhccH
Confidence 45566777777777664
No 23
>KOG1665|consensus
Probab=96.95 E-value=0.0028 Score=42.88 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=59.9
Q ss_pred EEEEECCeEEeeehhehhcc--CHHHHHhhccCCC---CCCeeEEcCCCCHHHHHHhhchhhCCccc-cChhcHHHHHHH
Q psy17360 34 VTLFCEGVTFKAHKIILAAC--SKHFQDLFEAAPF---CPNILIILDGTSSGNMSALLEFMYKGEVH-VSQESLSGFLKA 107 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~--S~~f~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~-~~~~~~~~ll~~ 107 (115)
|.+.++|+.|..-+-.+..+ -+.+.+||.+... +....-.+-+-+|..|+.+++|+-.|.+. .+.-++..+++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 66788998888766666555 5678899976321 11223444457999999999999999876 466788999999
Q ss_pred HhhcCc
Q psy17360 108 AESLQL 113 (115)
Q Consensus 108 a~~l~i 113 (115)
|++|+|
T Consensus 91 Arff~i 96 (302)
T KOG1665|consen 91 ARFFQI 96 (302)
T ss_pred hhHHhh
Confidence 999986
No 24
>KOG2715|consensus
Probab=95.52 E-value=0.036 Score=35.93 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=60.2
Q ss_pred eeEEEEECCeEEeeehhehhccCHHHHHhh-ccCCCC----CCeeEEcCCCCHHHHHHhhchhhCCccccChhcHHHHHH
Q psy17360 32 TDVTLFCEGVTFKAHKIILAACSKHFQDLF-EAAPFC----PNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLK 106 (115)
Q Consensus 32 ~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~-~~~~~~----~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~ 106 (115)
.=|.+.|||+.|..-|..|..-+..|-..| ...+.. ....-.+-+-+|.-|..+|+|+-.|++-++.-.-..++.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 346778899999999999988885554444 332211 122344456789999999999999999887744466888
Q ss_pred HHhhcCcc
Q psy17360 107 AAESLQLL 114 (115)
Q Consensus 107 ~a~~l~i~ 114 (115)
-|++|.++
T Consensus 101 EAefyn~~ 108 (210)
T KOG2715|consen 101 EAEFYNDP 108 (210)
T ss_pred hhhccCCh
Confidence 88888775
No 25
>KOG3840|consensus
Probab=95.52 E-value=0.048 Score=38.68 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=60.7
Q ss_pred eEEEEECCeEEeeehhehhcc-CHHHHHhhccCCC-----CCCeeEE-cCCCCHHHHHHhhchhhCCcccc-ChhcHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAAC-SKHFQDLFEAAPF-----CPNILII-LDGTSSGNMSALLEFMYKGEVHV-SQESLSGF 104 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~-S~~f~~~~~~~~~-----~~~~~i~-~~~~~~~~~~~~l~~~Ytg~~~~-~~~~~~~l 104 (115)
-++..+++..|.+-+.+|.+. -..+-.||.++.. +.. +.. -++++..+|+++|+|--+|.+.- +.-.+.+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErg-EyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERD-EFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCC-ceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 477788888999999998765 3445566655322 222 343 35699999999999999998874 55678899
Q ss_pred HHHHhhcCccC
Q psy17360 105 LKAAESLQLLI 115 (115)
Q Consensus 105 l~~a~~l~i~~ 115 (115)
.+++|+|-|++
T Consensus 176 rEACDYLlipF 186 (438)
T KOG3840|consen 176 REACDYLLVPF 186 (438)
T ss_pred HhhcceEEeec
Confidence 99999998764
No 26
>KOG1724|consensus
Probab=95.09 E-value=0.058 Score=34.79 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred ECCeEEeeehhehhccCHHHHHhhccCCCC-CCeeEEcCCCCHHHHHHhhchhhCCcc----------------------
Q psy17360 38 CEGVTFKAHKIILAACSKHFQDLFEAAPFC-PNILIILDGTSSGNMSALLEFMYKGEV---------------------- 94 (115)
Q Consensus 38 ~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~Ytg~~---------------------- 94 (115)
.+|+.|.+-..+.. .|..+.+++....-. ....|.+++++...|..|++|++-..-
T Consensus 12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred cCCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 36788888777764 577777777542211 114699999999999999999986321
Q ss_pred ---ccChhcHHHHHHHHhhcCcc
Q psy17360 95 ---HVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 95 ---~~~~~~~~~ll~~a~~l~i~ 114 (115)
.++..++.+++.||++|.|+
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~ 113 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIK 113 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccH
Confidence 12335788999999999875
No 27
>KOG1987|consensus
Probab=94.80 E-value=0.01 Score=41.44 Aligned_cols=54 Identities=26% Similarity=0.237 Sum_probs=43.5
Q ss_pred CeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchhhCCc
Q psy17360 40 GVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFMYKGE 93 (115)
Q Consensus 40 ~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~Ytg~ 93 (115)
++.+.+|+.+++++++.|+.++....... ...+.+.+.++..++.+..|.|+..
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s 163 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPS 163 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEecc
Confidence 56799999999999999999987644322 3345777889999999999999854
No 28
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.18 E-value=0.042 Score=38.99 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=57.9
Q ss_pred eEEeeehhehhccCHHHHHhhcc---CCCCCCeeEEcC-CCCHHHHHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 41 VTFKAHKIILAACSKHFQDLFEA---APFCPNILIILD-GTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 41 ~~~~~Hr~vL~~~S~~f~~~~~~---~~~~~~~~i~~~-~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.|.|.+-+|-..=.||+..+.. ...+ ...|.+. .-+..+|+=+++|+....-.++.+|+..++.-|++|+|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~-~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQR-WEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQME 90 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCc-CCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccH
Confidence 68999999999999999999954 1111 1123332 257889999999999988889999999999999999885
No 29
>KOG2723|consensus
Probab=91.51 E-value=0.84 Score=30.98 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=54.0
Q ss_pred eee-EEEEECCeEEeeehheh-hccCHHHHHhhccCCCCC---CeeEEcCCCCHHHHHHhhchhhCCccccCh--hcHHH
Q psy17360 31 LTD-VTLFCEGVTFKAHKIIL-AACSKHFQDLFEAAPFCP---NILIILDGTSSGNMSALLEFMYKGEVHVSQ--ESLSG 103 (115)
Q Consensus 31 ~~D-v~l~~~~~~~~~Hr~vL-~~~S~~f~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~--~~~~~ 103 (115)
..| +.+-+||..+..-..-| +-.-..+.+||.+...-. .....++ -+...|+.|++|+-+-...++. .++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CCcchHHHHHHHhcccccccchhhhhHHH
Confidence 344 44567777666544434 334566777877532211 1233333 4678899999999996555554 67889
Q ss_pred HHHHHhhcCcc
Q psy17360 104 FLKAAESLQLL 114 (115)
Q Consensus 104 ll~~a~~l~i~ 114 (115)
+...|++|+++
T Consensus 86 L~rEA~f~~l~ 96 (221)
T KOG2723|consen 86 LVREAEFFQLE 96 (221)
T ss_pred HHHHHHHHccc
Confidence 99999999975
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=2.4 Score=26.47 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=51.1
Q ss_pred EECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCcc----------------------
Q psy17360 37 FCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGEV---------------------- 94 (115)
Q Consensus 37 ~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~---------------------- 94 (115)
..+|+.|.+... +|-+|-..+.++.... .....+..+++...+|..+++|+-..+-
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr 85 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDST-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR 85 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhcccc-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence 346677777655 4678888899876432 2233578889999999999999953211
Q ss_pred ---ccChhcHHHHHHHHhhcCcc
Q psy17360 95 ---HVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 95 ---~~~~~~~~~ll~~a~~l~i~ 114 (115)
..+.+.+.++..+|++|.++
T Consensus 86 ~Fm~vDqemL~eI~laaNYL~ik 108 (158)
T COG5201 86 FFMEVDQEMLLEICLAANYLEIK 108 (158)
T ss_pred HHHHhhHHHHHHHHHhhccccch
Confidence 11224456777888888764
No 31
>KOG3713|consensus
Probab=85.11 E-value=7 Score=29.60 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=50.2
Q ss_pred eEEEEECCeEEeeehhehhccC-HHHHHhhcc-----------CCCCCCeeEEcCCCCHHHHHHhhchhhCCccccChh-
Q psy17360 33 DVTLFCEGVTFKAHKIILAACS-KHFQDLFEA-----------APFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQE- 99 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S-~~f~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~- 99 (115)
-+.+.|||..+...+..|...- .-+..+... +......+..++ -+|..|..+++|.+||++....+
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD-R~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD-RHPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred EEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeec-cChHHHHHHHHHHhcCeecccccc
Confidence 4778899988887777776521 111111111 111223355554 58999999999999999987543
Q ss_pred cHHHHHHHHhhcCcc
Q psy17360 100 SLSGFLKAAESLQLL 114 (115)
Q Consensus 100 ~~~~ll~~a~~l~i~ 114 (115)
....+.+--+++||+
T Consensus 111 C~~~F~eEL~yWgI~ 125 (477)
T KOG3713|consen 111 CPLSFEEELDYWGID 125 (477)
T ss_pred chHHHHHHHHHhCCC
Confidence 334555666666664
No 32
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=82.22 E-value=4.1 Score=24.88 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=34.9
Q ss_pred CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCC--CHHHHHHhhchhhCCc
Q psy17360 39 EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGT--SSGNMSALLEFMYKGE 93 (115)
Q Consensus 39 ~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~Ytg~ 93 (115)
++..+.+|--+++.+||.+...=..-+...+..+..-++ -.+.....++++|.|.
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s 76 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS 76 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC
Confidence 567999999999999998864311111122222221122 3467889999999874
No 33
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=55.65 E-value=7.9 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=14.6
Q ss_pred HHHHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 80 GNMSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 80 ~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.++.-|+.+-.|.+ .+..+|+.|+||
T Consensus 3 e~l~~Ai~~v~~g~~--------S~r~AA~~ygVp 29 (45)
T PF05225_consen 3 EDLQKAIEAVKNGKM--------SIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHHHHHTTSS---------HHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCC--------CHHHHHHHHCcC
Confidence 445555555555543 345688888876
No 34
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=54.62 E-value=8.5 Score=21.44 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=14.2
Q ss_pred ccChhcHHHHHHHHhhcCcc
Q psy17360 95 HVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 95 ~~~~~~~~~ll~~a~~l~i~ 114 (115)
.++.+.+.+++.||++|+|+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~ 29 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIK 29 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-H
T ss_pred HcCHHHHHHHHHHHHHHcch
Confidence 34667888999999999875
No 35
>KOG4390|consensus
Probab=48.04 E-value=30 Score=25.95 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEEEECCeEEeeehhehhccCHHHHHhhccCCCC----CCeeEEcCCCCHHHHHHhhchhhCCccccCh
Q psy17360 34 VTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFC----PNILIILDGTSSGNMSALLEFMYKGEVHVSQ 98 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~ 98 (115)
+++.+.|+.|...|..|...- ..++.+...+ ....-.+-+-+|+.|+.+|+|--||++.-+.
T Consensus 42 lvlNvSGrRFeTWknTLeryP---dTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR 107 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLERYP---DTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPR 107 (632)
T ss_pred EEEeccccchhHHHhHHHhCc---hhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccCch
Confidence 566778999999988886543 3334332211 1111223346899999999999999988654
No 36
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=45.49 E-value=16 Score=17.42 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=12.9
Q ss_pred hhhCCccc----cChhcHHHHHHHHh
Q psy17360 88 FMYKGEVH----VSQESLSGFLKAAE 109 (115)
Q Consensus 88 ~~Ytg~~~----~~~~~~~~ll~~a~ 109 (115)
-+|.|++. ++.+.+++++.+|.
T Consensus 10 IfY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 10 IFYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EEECCEEEEeCCCCHHHHHHHHHHhc
Confidence 35666653 45666666666654
No 37
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=41.17 E-value=9.3 Score=21.76 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.5
Q ss_pred HHHhhchhhCCc
Q psy17360 82 MSALLEFMYKGE 93 (115)
Q Consensus 82 ~~~~l~~~Ytg~ 93 (115)
+.+=++||||..
T Consensus 67 L~AHlDYIYTQ~ 78 (81)
T PF06404_consen 67 LAAHLDYIYTQH 78 (81)
T ss_pred HHHHhhheeccC
Confidence 335578999975
No 38
>KOG3342|consensus
Probab=39.96 E-value=14 Score=23.79 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=12.4
Q ss_pred EEEEECCeEEe-eehhe
Q psy17360 34 VTLFCEGVTFK-AHKII 49 (115)
Q Consensus 34 v~l~~~~~~~~-~Hr~v 49 (115)
+++.++|+.++ +||+|
T Consensus 84 vVf~vegR~IPiVHRvi 100 (180)
T KOG3342|consen 84 VVFKVEGREIPIVHRVI 100 (180)
T ss_pred EEEEECCccCchhHHHH
Confidence 45678999998 68876
No 39
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=56 Score=21.06 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
+..+.+.+.+++..| .|++|.+||
T Consensus 82 Se~fA~~l~~~~~~G--~~i~f~IGG 105 (155)
T COG1576 82 SEEFADFLERLRDDG--RDISFLIGG 105 (155)
T ss_pred hHHHHHHHHHHHhcC--CeEEEEEeC
Confidence 446778888888888 799999987
No 40
>KOG1778|consensus
Probab=36.94 E-value=11 Score=27.08 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEECCeEEeeehhehhccCHHHHHhhccCCCC-CCeeEEcCCCCHHHHHHhhchhhCC
Q psy17360 36 LFCEGVTFKAHKIILAACSKHFQDLFEAAPFC-PNILIILDGTSSGNMSALLEFMYKG 92 (115)
Q Consensus 36 l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~Ytg 92 (115)
+......+.+|+.+|...|+.|.......... ....+..-.++...+..+.+++|.+
T Consensus 31 ~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 31 VTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 33445679999999999999998876654111 1224555556677788888888876
No 41
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=36.65 E-value=43 Score=17.43 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCeeeEEEEE
Q psy17360 20 TTFETLFKSESLTDVTLFC 38 (115)
Q Consensus 20 ~~l~~~~~~~~~~Dv~l~~ 38 (115)
+.+.-++++|-+||+.+..
T Consensus 34 ~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 34 DVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHHcCCCcceeeec
Confidence 4455667889999998764
No 42
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=31.87 E-value=1.1e+02 Score=17.98 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=34.4
Q ss_pred EEEEECC--eEEeeehhehhccCHHHHHhhccCCCC----CCeeEEcCCCCHHHHHHhhchh
Q psy17360 34 VTLFCEG--VTFKAHKIILAACSKHFQDLFEAAPFC----PNILIILDGTSSGNMSALLEFM 89 (115)
Q Consensus 34 v~l~~~~--~~~~~Hr~vL~~~S~~f~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~ 89 (115)
+.+.||+ +.|-+....| ..|.|+.++....++ .+..|.+| .+...|+.++..+
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4566665 4566665555 468999998754322 23357777 6788888887654
No 43
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=30.57 E-value=23 Score=17.31 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=11.7
Q ss_pred hhcHHHHHHHHhhcCcc
Q psy17360 98 QESLSGFLKAAESLQLL 114 (115)
Q Consensus 98 ~~~~~~ll~~a~~l~i~ 114 (115)
...+.+|...|+.++|+
T Consensus 4 ~~~~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 4 SMTLSELREIAKELGIE 20 (43)
T ss_dssp CS-HHHHHHHHHCTT-T
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 34567888899988875
No 44
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.44 E-value=74 Score=18.45 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=18.5
Q ss_pred CCCHHHHHHhhchhhCCccccChhcHHHHHH
Q psy17360 76 GTSSGNMSALLEFMYKGEVHVSQESLSGFLK 106 (115)
Q Consensus 76 ~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~ 106 (115)
.+++++|+.+++.+- +++.++-+..+++
T Consensus 40 ~~dp~VFriildLL~---~nVsP~AI~qmLK 67 (88)
T PF12926_consen 40 PMDPEVFRIILDLLR---LNVSPDAIFQMLK 67 (88)
T ss_pred CcChHHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 368888999888874 4555555555443
No 45
>PRK09738 small toxic polypeptide; Provisional
Probab=28.00 E-value=98 Score=16.06 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.0
Q ss_pred HhhcCCeeeEEEEECCeEEeee
Q psy17360 25 LFKSESLTDVTLFCEGVTFKAH 46 (115)
Q Consensus 25 ~~~~~~~~Dv~l~~~~~~~~~H 46 (115)
+...+.+|++.+.-++.++.|.
T Consensus 24 ~l~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 24 YLTRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred HHccCCceEEEEecCCEEEEEE
Confidence 3456789999999999988765
No 46
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.20 E-value=1.1e+02 Score=18.69 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHhhcCCeeeEEEEECCe
Q psy17360 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGV 41 (115)
Q Consensus 12 ~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~ 41 (115)
++....+.+.+.+..++ +|+++..+|.
T Consensus 42 ~Dd~~~i~~~i~~~~~~---~DlvittGG~ 68 (133)
T cd00758 42 PDDADSIRAALIEASRE---ADLVLTTGGT 68 (133)
T ss_pred CCCHHHHHHHHHHHHhc---CCEEEECCCC
Confidence 57778888888887665 6999999774
No 47
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.85 E-value=65 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=11.5
Q ss_pred EEEECCeEEeeehheh
Q psy17360 35 TLFCEGVTFKAHKIIL 50 (115)
Q Consensus 35 ~l~~~~~~~~~Hr~vL 50 (115)
.+..+|..+|.||.|-
T Consensus 48 ~~~~~~~~IP~HRIve 63 (77)
T COG1531 48 YLLYQGTYIPYHRIVE 63 (77)
T ss_pred EEEecCceeeeEEEEE
Confidence 4455678899998774
No 48
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=25.70 E-value=3.1e+02 Score=24.48 Aligned_cols=87 Identities=9% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeE--EcCCCCHHH
Q psy17360 4 QQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILI--ILDGTSSGN 81 (115)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i--~~~~~~~~~ 81 (115)
.+.+.+.+..+.......+...+++...-++.+...|.++.+|+-||+ -+|.+.|..+....+..| .+=.-+.+.
T Consensus 1137 ~s~~~i~Fs~~eee~~~Dvk~aL~~~fG~g~~iyerg~~i~V~SRil~---~lF~~vLk~G~na~~KRIP~~lF~ap~e~ 1213 (1627)
T PRK14715 1137 KSVYQINFSNAEEEVREDIKKALREAFGDGFGIYERGGKVTVGSRILY---LLFTEVLKAGKNAHSKRVPSFVFKLPKEK 1213 (1627)
T ss_pred CceeEEEeccchHHHHHHHHHHHHHhcccCceeeccCCeeeechHHHH---HHHHHHHhcCCCcccccCCHHHhcCcHHH
Confidence 345666778888888888888877765556667677788888888885 366666665433222211 111246778
Q ss_pred HHHhhchhhCCc
Q psy17360 82 MSALLEFMYKGE 93 (115)
Q Consensus 82 ~~~~l~~~Ytg~ 93 (115)
...+|+-+|.|.
T Consensus 1214 v~~~LkglF~GD 1225 (1627)
T PRK14715 1214 VKLMLSAYFEGD 1225 (1627)
T ss_pred HHHHHHHhccCC
Confidence 888899888764
No 49
>KOG3863|consensus
Probab=25.10 E-value=11 Score=29.47 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=30.1
Q ss_pred HHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhcc
Q psy17360 22 FETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEA 63 (115)
Q Consensus 22 l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~ 63 (115)
++..+.....||++..+..+.|.+|+ ++.||....-+
T Consensus 5 ~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G 41 (604)
T KOG3863|consen 5 LNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVG 41 (604)
T ss_pred ccccccccccchhHHHHhccccccee-----ccchhhhhhcc
Confidence 34556677899999999999999999 78899776554
No 50
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=24.60 E-value=1.4e+02 Score=16.90 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=21.1
Q ss_pred HHHHHHhhchhhCCcccc----------ChhcHHHHHHHHhhcCcc
Q psy17360 79 SGNMSALLEFMYKGEVHV----------SQESLSGFLKAAESLQLL 114 (115)
Q Consensus 79 ~~~~~~~l~~~Ytg~~~~----------~~~~~~~ll~~a~~l~i~ 114 (115)
...+-.+++.++.+.+.. ..+++...+.+++.+|++
T Consensus 32 G~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~ 77 (107)
T cd00014 32 GIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVP 77 (107)
T ss_pred hHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCc
Confidence 444555666665554432 125677777777777765
No 51
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=23.69 E-value=65 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.4
Q ss_pred hhhCCccccChhcHHHHHHHHhhcCccC
Q psy17360 88 FMYKGEVHVSQESLSGFLKAAESLQLLI 115 (115)
Q Consensus 88 ~~Ytg~~~~~~~~~~~ll~~a~~l~i~~ 115 (115)
|+|+-...++.+..+.++..|+..|.++
T Consensus 136 WlLsRtP~~s~~~~~~ml~~ak~~Gfdv 163 (174)
T COG3040 136 WLLSRTPTLSQETLKRMLEIAKRRGFDV 163 (174)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCc
Confidence 6777777789999999999999888653
No 52
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=23.18 E-value=1.1e+02 Score=15.11 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.8
Q ss_pred HhhcCCeeeEEEEECCeEEeee
Q psy17360 25 LFKSESLTDVTLFCEGVTFKAH 46 (115)
Q Consensus 25 ~~~~~~~~Dv~l~~~~~~~~~H 46 (115)
+...+.+|.+.+..++.++.|.
T Consensus 19 ~l~r~sLCEl~i~~g~~evaA~ 40 (43)
T PF01848_consen 19 WLTRDSLCELRIKDGNTEVAAF 40 (43)
T ss_pred HHhccCcEEEEEecCCEEEEEE
Confidence 3456789999999999988764
No 53
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.65 E-value=1.2e+02 Score=15.07 Aligned_cols=33 Identities=36% Similarity=0.458 Sum_probs=23.3
Q ss_pred CCHHHHHHhhchhhCCccccChhcHHHHHHHHhhcCc
Q psy17360 77 TSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113 (115)
Q Consensus 77 ~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i 113 (115)
++...+..+|+ |.-.++.+....++.+|+.+|-
T Consensus 11 vS~~TVSr~ln----~~~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 11 VSKSTVSRVLN----GPPRVSEETRERILEAAEELGY 43 (46)
T ss_dssp SSHHHHHHHHT----TCSSSTHHHHHHHHHHHHHHTB
T ss_pred cCHHHHHHHHh----CCCCCCHHHHHHHHHHHHHHCC
Confidence 45555555553 5557888888999999988763
No 54
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=21.82 E-value=38 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.3
Q ss_pred EEeeehhehhcc
Q psy17360 42 TFKAHKIILAAC 53 (115)
Q Consensus 42 ~~~~Hr~vL~~~ 53 (115)
.++|||+|=+..
T Consensus 136 iIPCHRVig~~G 147 (168)
T COG0350 136 IIPCHRVIGADG 147 (168)
T ss_pred EecCeEeEcCCC
Confidence 599999986544
No 55
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=20.96 E-value=94 Score=17.90 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=14.1
Q ss_pred ChhcHHHHHHHHhhcCccC
Q psy17360 97 SQESLSGFLKAAESLQLLI 115 (115)
Q Consensus 97 ~~~~~~~ll~~a~~l~i~~ 115 (115)
..-+..+|+..|+.|++++
T Consensus 13 n~iT~~eLlkyskqy~i~i 31 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI 31 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC
Confidence 3345678889999998875
No 56
>PRK09759 small toxic polypeptide; Provisional
Probab=20.13 E-value=1.5e+02 Score=15.26 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=17.8
Q ss_pred HhhcCCeeeEEEEECCeEEeee
Q psy17360 25 LFKSESLTDVTLFCEGVTFKAH 46 (115)
Q Consensus 25 ~~~~~~~~Dv~l~~~~~~~~~H 46 (115)
+...+.+|.+.+.-|+.++.|.
T Consensus 22 ~l~r~sLCEl~i~~g~~evaA~ 43 (50)
T PRK09759 22 WMIRDSLCELHIKQGSYELAAF 43 (50)
T ss_pred HHhCCCceEEEEecCCEEEEEE
Confidence 3456789999999999988765
Done!