Query psy17360
Match_columns 115
No_of_seqs 155 out of 1161
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:24:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fkc_A Transcriptional regulat 100.0 2.5E-31 8.6E-36 161.5 9.6 110 1-114 1-111 (116)
2 3ohu_A Transcription regulator 100.0 1.1E-30 3.9E-35 160.2 11.4 111 3-114 4-115 (125)
3 2if5_A Zinc finger and BTB dom 100.0 8E-31 2.7E-35 159.8 9.8 107 8-114 2-109 (120)
4 1r29_A B-cell lymphoma 6 prote 100.0 9.9E-31 3.4E-35 160.9 10.3 109 6-114 4-113 (127)
5 2ihc_A Transcription regulator 100.0 9.9E-31 3.4E-35 160.4 9.9 111 3-114 1-112 (124)
6 3b84_A Zinc finger and BTB dom 100.0 2.6E-31 9E-36 162.0 6.9 103 9-114 2-104 (119)
7 3ga1_A Nucleus accumbens-assoc 100.0 3.7E-30 1.3E-34 158.8 10.8 109 3-114 5-114 (129)
8 2z8h_A Transcription regulator 100.0 4E-30 1.4E-34 160.3 10.8 109 5-114 10-119 (138)
9 2ppi_A Gigaxonin; BTB domain, 100.0 2.8E-30 9.7E-35 162.1 9.6 110 5-114 21-133 (144)
10 1buo_A POZ domain, protein (pr 100.0 7.7E-30 2.6E-34 155.8 9.0 104 7-114 4-107 (121)
11 2yy9_A Zinc finger and BTB dom 100.0 9.9E-30 3.4E-34 158.1 8.1 102 10-114 4-105 (135)
12 2vpk_A Myoneurin; transcriptio 100.0 1.9E-29 6.4E-34 153.0 8.2 100 12-114 3-104 (116)
13 2q81_A MIZ-1 protein; BTB/POZ 100.0 1.7E-29 5.8E-34 153.9 5.1 102 9-114 5-106 (119)
14 3hve_A Gigaxonin; ubiquitin, c 99.9 1.4E-27 4.9E-32 161.8 8.0 109 6-114 6-117 (256)
15 2vkp_A BTB/POZ domain-containi 99.9 2.6E-27 8.9E-32 141.9 6.9 90 25-114 2-95 (109)
16 3m5b_A Zinc finger and BTB dom 99.9 1.2E-26 4.1E-31 141.4 8.2 96 9-114 10-105 (119)
17 3i3n_A Kelch-like protein 11; 99.9 4.5E-27 1.5E-31 161.1 7.0 110 5-114 6-125 (279)
18 3htm_A Speckle-type POZ protei 99.9 1.2E-26 4.1E-31 148.7 8.0 104 11-114 14-118 (172)
19 4eoz_A Speckle-type POZ protei 99.9 6E-27 2.1E-31 146.4 6.2 102 13-114 7-109 (145)
20 3hqi_A Speckle-type POZ protei 99.9 3.3E-24 1.1E-28 148.7 8.1 101 14-114 157-258 (312)
21 4ajy_C Transcription elongatio 99.6 1.7E-14 5.9E-19 84.5 8.2 79 34-113 4-97 (97)
22 2ast_A S-phase kinase-associat 99.5 4.3E-14 1.5E-18 89.7 7.0 80 34-114 3-112 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.3 9.7E-12 3.3E-16 77.4 6.5 77 34-114 4-107 (141)
24 1hv2_A Elongin C, ELC1; protei 99.1 2.1E-10 7.2E-15 67.3 7.5 79 34-113 6-99 (99)
25 2p1m_A SKP1-like protein 1A; F 99.1 1.4E-11 4.7E-16 78.2 -0.3 78 34-114 6-111 (160)
26 2fnj_C Transcription elongatio 99.0 7.9E-10 2.7E-14 64.4 6.6 79 34-113 3-96 (96)
27 1vcb_B Protein (elongin C); tu 98.6 8.3E-08 2.8E-12 57.3 6.3 80 33-113 18-112 (112)
28 3v7d_A Suppressor of kinetocho 98.6 1.3E-07 4.5E-12 60.3 7.6 81 33-114 8-119 (169)
29 3drz_A BTB/POZ domain-containi 98.6 2.8E-07 9.7E-12 54.5 7.1 81 33-114 7-94 (107)
30 3kvt_A Potassium channel prote 98.0 1.2E-05 4.1E-10 48.1 4.6 81 33-114 6-90 (115)
31 3drx_A BTB/POZ domain-containi 97.8 5.2E-05 1.8E-09 49.4 6.0 81 33-114 13-100 (202)
32 1t1d_A Protein (potassium chan 97.7 3.6E-05 1.2E-09 44.8 4.1 80 34-114 3-87 (100)
33 1s1g_A Potassium voltage-gated 97.7 0.00012 4.3E-09 44.2 5.8 78 33-114 14-97 (124)
34 1nn7_A Potassium channel KV4.2 97.4 8.7E-05 3E-09 43.6 2.5 79 34-114 2-84 (105)
35 2nz0_B Potassium voltage-gated 97.4 0.00025 8.7E-09 43.7 4.6 78 33-114 36-119 (140)
36 2r9r_B Paddle chimera voltage 95.2 0.028 9.5E-07 41.5 5.0 81 33-114 53-138 (514)
37 1pd7_B MAD1; PAH2, SIN3, eukar 54.2 4.7 0.00016 17.1 0.8 13 99-111 3-15 (26)
38 4h63_H Mediator of RNA polymer 38.1 14 0.00049 23.8 1.6 14 80-93 186-199 (200)
39 1o6d_A Hypothetical UPF0247 pr 34.4 42 0.0014 20.8 3.2 24 15-40 80-103 (163)
40 1ns5_A Hypothetical protein YB 32.3 41 0.0014 20.7 2.9 24 15-40 81-104 (155)
41 2g2c_A Putative molybdenum cof 31.1 70 0.0024 19.5 3.9 28 11-40 51-78 (167)
42 1uxc_A FRUR (1-57), fructose r 29.2 62 0.0021 16.4 3.4 34 76-113 11-47 (65)
43 1to0_A Hypothetical UPF0247 pr 21.8 1.3E+02 0.0046 18.6 3.9 25 15-40 85-109 (167)
44 3kbq_A Protein TA0487; structu 21.7 1E+02 0.0035 19.1 3.4 27 11-40 45-71 (172)
45 2gsl_A Hypothetical protein; a 21.4 1E+02 0.0034 18.5 3.1 28 78-108 98-125 (137)
46 1e5p_A Aphrodisin; lipocalin, 20.5 50 0.0017 19.3 1.7 27 88-114 110-136 (151)
No 1
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.97 E-value=2.5e-31 Score=161.49 Aligned_cols=110 Identities=23% Similarity=0.388 Sum_probs=101.7
Q ss_pred CCCCCceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHH
Q psy17360 1 MDPQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSG 80 (115)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~ 80 (115)
|++++...+.+++|...+++.|+++++++.+|||++.++|+.|+|||.||+++|+||+++|.++ ...|.+++++++
T Consensus 1 m~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~~~ 76 (116)
T 3fkc_A 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAE 76 (116)
T ss_dssp ---CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHH
T ss_pred CCcCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHH
Confidence 7788888899999999999999999999999999999999999999999999999999999864 447899999999
Q ss_pred HHHHhhchhhCCcc-ccChhcHHHHHHHHhhcCcc
Q psy17360 81 NMSALLEFMYKGEV-HVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 81 ~~~~~l~~~Ytg~~-~~~~~~~~~ll~~a~~l~i~ 114 (115)
.|+.+++|+|||++ .++.+++.+++.+|++|+++
T Consensus 77 ~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~ 111 (116)
T 3fkc_A 77 IFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVK 111 (116)
T ss_dssp HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999 79999999999999999985
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.97 E-value=1.1e-30 Score=160.21 Aligned_cols=111 Identities=24% Similarity=0.420 Sum_probs=103.7
Q ss_pred CCCceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCC-CCHHH
Q psy17360 3 PQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDG-TSSGN 81 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~-~~~~~ 81 (115)
+...+.+.+++|...+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+.+.+ ...|.+++ ++++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~~~~~~ 82 (125)
T 3ohu_A 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVTARG 82 (125)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-SCEEECCTTCCHHH
T ss_pred CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-CcEEEeCCCCCHHH
Confidence 34567788899999999999999999999999999999999999999999999999999987755 56789998 99999
Q ss_pred HHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 82 MSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 82 ~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 83 f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~ 115 (125)
T 3ohu_A 83 FGPLLQFAYTAKLLLSRENIREVIRCAEFLRMH 115 (125)
T ss_dssp HHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBS
T ss_pred HHHHHHhHcCCceEECHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999986
No 3
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.97 E-value=8e-31 Score=159.83 Aligned_cols=107 Identities=25% Similarity=0.466 Sum_probs=97.6
Q ss_pred eEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhh
Q psy17360 8 CLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALL 86 (115)
Q Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l 86 (115)
+++|++|++.+++.++++++++.+|||++.++|+.|+|||.||+++|+||++||.+++.+. ...|.+++++++.|+.++
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll 81 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999877655 458999999999999999
Q ss_pred chhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 87 EFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 87 ~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+|+|||++.++.+++.+++.+|++|+++
T Consensus 82 ~~~Yt~~~~~~~~~~~~ll~~A~~~~i~ 109 (120)
T 2if5_A 82 DFAYTATLTVSTANVGDILSAARLLEIP 109 (120)
T ss_dssp HHHHHSCCCCCGGGHHHHHHHHHHTTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999985
No 4
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.97 E-value=9.9e-31 Score=160.88 Aligned_cols=109 Identities=23% Similarity=0.389 Sum_probs=102.3
Q ss_pred ceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEc-CCCCHHHHHH
Q psy17360 6 QFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIIL-DGTSSGNMSA 84 (115)
Q Consensus 6 ~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 84 (115)
+..+++++|+..+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+.+.+....|.+ ++++++.|+.
T Consensus 4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ 83 (127)
T 1r29_A 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNI 83 (127)
T ss_dssp -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHH
T ss_pred CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHH
Confidence 455678999999999999999999999999999999999999999999999999999887766668999 9999999999
Q ss_pred hhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 85 LLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 85 ~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+++|+|||.+.++.+++.+++.+|++|+++
T Consensus 84 ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~ 113 (127)
T 1r29_A 84 LLDFMYTSRLNLREGNIMAVMATAMYLQME 113 (127)
T ss_dssp HHHHHHHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred HHHHHcCCCcCcCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999985
No 5
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.97 E-value=9.9e-31 Score=160.43 Aligned_cols=111 Identities=27% Similarity=0.438 Sum_probs=100.5
Q ss_pred CCCceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEc-CCCCHHH
Q psy17360 3 PQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIIL-DGTSSGN 81 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~-~~~~~~~ 81 (115)
|.+.+.++++.|+..+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+.+.+ ...+.+ +++++++
T Consensus 1 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e-~~~i~l~~~v~~~~ 79 (124)
T 2ihc_A 1 SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG-ELNITLPEEVTVKG 79 (124)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----CEEEECCTTSCHHH
T ss_pred CCceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC-CceEeecCCcCHHH
Confidence 35678899999999999999999999999999999999999999999999999999999987654 356888 4899999
Q ss_pred HHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 82 MSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 82 ~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 80 f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~ 112 (124)
T 2ihc_A 80 FEPLIQFAYTAKLILSKENVDEVCKCVEFLSVH 112 (124)
T ss_dssp HHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBS
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCH
Confidence 999999999999999999999999999999986
No 6
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=161.96 Aligned_cols=103 Identities=24% Similarity=0.401 Sum_probs=97.3
Q ss_pred EEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhch
Q psy17360 9 LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEF 88 (115)
Q Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 88 (115)
++|++|...+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+++|
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999998765 45689999999999999999
Q ss_pred hhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 89 MYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 89 ~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+|||++.++.+++.+++.+|++|+++
T Consensus 79 iYtg~~~~~~~~v~~ll~~A~~~~i~ 104 (119)
T 3b84_A 79 FYTGHLALTSGNRDQVLLAARELRVP 104 (119)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHhCcH
Confidence 99999999999999999999999985
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=158.77 Aligned_cols=109 Identities=25% Similarity=0.428 Sum_probs=101.7
Q ss_pred CCCceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcC-CCCHHH
Q psy17360 3 PQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILD-GTSSGN 81 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~-~~~~~~ 81 (115)
..+.+.++|++|...+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+. ....|.++ +++++.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~~~~ 81 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQPQS 81 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCCHHH
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCCHHH
Confidence 34678899999999999999999999999999999999999999999999999999999876 45579996 899999
Q ss_pred HHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 82 MSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 82 ~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 82 f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~ 114 (129)
T 3ga1_A 82 FQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQ 114 (129)
T ss_dssp HHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBT
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999986
No 8
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.97 E-value=4e-30 Score=160.32 Aligned_cols=109 Identities=24% Similarity=0.423 Sum_probs=101.5
Q ss_pred CceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcC-CCCHHHHH
Q psy17360 5 QQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILD-GTSSGNMS 83 (115)
Q Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~-~~~~~~~~ 83 (115)
+.+.++++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.+.+ ...+.++ +++++.|+
T Consensus 10 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~v~~~~~~ 88 (138)
T 2z8h_A 10 AVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-ELTVTLPEEVTVKGFE 88 (138)
T ss_dssp CCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT-TEEEECCTTSCHHHHH
T ss_pred CeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC-CceEEeCCCCCHHHHH
Confidence 457788899999999999999999999999999999999999999999999999999987654 3578885 89999999
Q ss_pred HhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 84 ALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 84 ~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
.+|+|+|||++.++.+++.+++.+|++|+++
T Consensus 89 ~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~ 119 (138)
T 2z8h_A 89 PLIQFAYTAKLILSKDNVDEVCRCVEFLSVH 119 (138)
T ss_dssp HHHHHHHHSCCCCCTTTHHHHHHHHHHHTCG
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999986
No 9
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=162.14 Aligned_cols=110 Identities=21% Similarity=0.356 Sum_probs=99.8
Q ss_pred CceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCC---CCeeEEcCCCCHHH
Q psy17360 5 QQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFC---PNILIILDGTSSGN 81 (115)
Q Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~---~~~~i~~~~~~~~~ 81 (115)
+.+.+++++|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.+.+ ....|.++++++++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~ 100 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMV 100 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHH
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHH
Confidence 556778899999999999999999999999999999999999999999999999999987653 35589999999999
Q ss_pred HHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 82 MSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 82 ~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 101 f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~ 133 (144)
T 2ppi_A 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLT 133 (144)
T ss_dssp HHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcH
Confidence 999999999999999999999999999999985
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.96 E-value=7.7e-30 Score=155.80 Aligned_cols=104 Identities=28% Similarity=0.395 Sum_probs=97.8
Q ss_pred eeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhh
Q psy17360 7 FCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALL 86 (115)
Q Consensus 7 ~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 86 (115)
..+++++|+..+.+.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.++ ...+.+++++++.|+.++
T Consensus 4 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~~~~f~~ll 79 (121)
T 1buo_A 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLSPKTFQQIL 79 (121)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHHHHHHHH
T ss_pred eeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----CcEEEeCCCCHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999763 446899999999999999
Q ss_pred chhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 87 EFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 87 ~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+|+|||++.++.+++.+++.+|++|+++
T Consensus 80 ~~~Ytg~~~~~~~~~~~ll~~A~~~~i~ 107 (121)
T 1buo_A 80 EYAYTATLQAKAEDLDDLLYAAEILEIE 107 (121)
T ss_dssp HHHHHSCCCCCGGGHHHHHHHHHHHTCH
T ss_pred HhhcCCCcCCCHHHHHHHHHHHHHHCCH
Confidence 9999999999999999999999999985
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.96 E-value=9.9e-30 Score=158.08 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=92.1
Q ss_pred EeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchh
Q psy17360 10 KWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFM 89 (115)
Q Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (115)
.+++|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.+.+ ...|.++++++++|+.+++|+
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGGHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999998765 446899999999999999999
Q ss_pred hCCccccChhcHHHHHHHHhhcCcc
Q psy17360 90 YKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 90 Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|||++.++.+++.+++.+|++|+++
T Consensus 81 Ytg~~~i~~~~v~~ll~~A~~l~i~ 105 (135)
T 2yy9_A 81 YTGHLALTSGNRDQVLLAAKELRVP 105 (135)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCcH
Confidence 9999999999999999999999985
No 12
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=152.97 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=93.0
Q ss_pred CCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcC--CCCHHHHHHhhchh
Q psy17360 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILD--GTSSGNMSALLEFM 89 (115)
Q Consensus 12 ~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~ 89 (115)
++|+..+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+. ....|.++ +++++.|+.+++|+
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999876 23356666 99999999999999
Q ss_pred hCCccccChhcHHHHHHHHhhcCcc
Q psy17360 90 YKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 90 Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|||++.++.+++.+++.+|++|+++
T Consensus 80 Yt~~~~~~~~~v~~ll~~A~~~~i~ 104 (116)
T 2vpk_A 80 YTGTLNLDSWNVKEIHQAADYLKVE 104 (116)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999985
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.96 E-value=1.7e-29 Score=153.91 Aligned_cols=102 Identities=30% Similarity=0.500 Sum_probs=94.6
Q ss_pred EEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhch
Q psy17360 9 LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEF 88 (115)
Q Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 88 (115)
+++++|...+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+. ...+.+++++++.|+.+++|
T Consensus 5 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~~~~f~~ll~~ 80 (119)
T 2q81_A 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----KDVVHLDISNAAGLGQVLEF 80 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----CSGGGGGGCCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999863 23577888999999999999
Q ss_pred hhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 89 MYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 89 ~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+|||++.++.+++.+++.+|++|+++
T Consensus 81 ~Ytg~~~i~~~~~~~ll~~A~~l~i~ 106 (119)
T 2q81_A 81 MYTAKLSLSPENVDDVLAVATFLQMQ 106 (119)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999985
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=1.4e-27 Score=161.78 Aligned_cols=109 Identities=20% Similarity=0.336 Sum_probs=91.1
Q ss_pred ceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCC---CCCeeEEcCCCCHHHH
Q psy17360 6 QFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF---CPNILIILDGTSSGNM 82 (115)
Q Consensus 6 ~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~---~~~~~i~~~~~~~~~~ 82 (115)
...+.+++|+..+++.|+++++++.+|||++.++|+.|+|||.||+++|+||++||.+++. .....|.++++++++|
T Consensus 6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f 85 (256)
T 3hve_A 6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVM 85 (256)
T ss_dssp ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHH
T ss_pred CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHH
Confidence 3455669999999999999999999999999999999999999999999999999988664 2345899999999999
Q ss_pred HHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 83 SALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 83 ~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 86 ~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~ 117 (256)
T 3hve_A 86 REILDYIFSGQIRLNEDTIQDVVQAADLLLLT 117 (256)
T ss_dssp HHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCH
T ss_pred HHHHhhccCCCCcccHhHHHHHHHHHHHHChH
Confidence 99999999999999999999999999999985
No 15
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=141.90 Aligned_cols=90 Identities=24% Similarity=0.330 Sum_probs=80.3
Q ss_pred HhhcCCeeeEEEEECC----eEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCccccChhc
Q psy17360 25 LFKSESLTDVTLFCEG----VTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQES 100 (115)
Q Consensus 25 ~~~~~~~~Dv~l~~~~----~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~~ 100 (115)
+++++.+|||++.+++ +.|+|||.||+++|+||++||.+.+.+....|.+++++++.|+.+++|+|||.+.++.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~ 81 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEADT 81 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCTTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCHHH
Confidence 5788999999999998 899999999999999999999987766557899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcc
Q psy17360 101 LSGFLKAAESLQLL 114 (115)
Q Consensus 101 ~~~ll~~a~~l~i~ 114 (115)
+.+++.+|++|+++
T Consensus 82 ~~~ll~~A~~~~~~ 95 (109)
T 2vkp_A 82 VLATLYAAKKYIVP 95 (109)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCcH
Confidence 99999999999985
No 16
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.94 E-value=1.2e-26 Score=141.42 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=87.0
Q ss_pred EEeCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhch
Q psy17360 9 LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEF 88 (115)
Q Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 88 (115)
...+.+...+++.|+ +.++.+|||++.++|+.|+|||.||+++|+||++ ....+.+++++++.|+.+++|
T Consensus 10 ~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~~~~f~~ll~f 79 (119)
T 3m5b_A 10 LPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGISPSTFAQLLNF 79 (119)
T ss_dssp ECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCCHHHHHHHHHH
Confidence 345677788888886 6789999999999999999999999999999984 345789999999999999999
Q ss_pred hhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 89 MYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 89 ~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+|||++.++.+++.+++.+|++|+++
T Consensus 80 iYtg~~~i~~~~v~~ll~aA~~l~i~ 105 (119)
T 3m5b_A 80 VYGESVELQPGELRPLQEAARALGVQ 105 (119)
T ss_dssp HTTCCEEECGGGHHHHHHHHHHTTCH
T ss_pred HcCCCcCcCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999985
No 17
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.94 E-value=4.5e-27 Score=161.10 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=96.9
Q ss_pred CceeEEeCCchHHHHHHHHHHhhcCCeeeEEEEEC---CeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcC-----
Q psy17360 5 QQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCE---GVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILD----- 75 (115)
Q Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~---~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~----- 75 (115)
+...+.+++|+..+++.|+++++++.+|||++.++ |+.|+|||.||+++|+||++||.+++.+. ...|.++
T Consensus 6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~ 85 (279)
T 3i3n_A 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSE 85 (279)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSST
T ss_pred cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEecccccc
Confidence 45667789999999999999999999999999998 89999999999999999999999877665 4588998
Q ss_pred -CCCHHHHHHhhchhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 76 -GTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 76 -~~~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
++++++|+.+++|+|||++.++.+++.+++.+|++|+++
T Consensus 86 ~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~ 125 (279)
T 3i3n_A 86 PGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLI 125 (279)
T ss_dssp TCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcH
Confidence 899999999999999999999999999999999999985
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=148.70 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=96.2
Q ss_pred eCCchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchh
Q psy17360 11 WSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFM 89 (115)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~ 89 (115)
++.+++.+.+.+.++++++.+|||++.++|+.|+|||.||+++|+||++||.+.+.+. ...|.+++++++.|+.+++|+
T Consensus 14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999999999999999999877655 458999999999999999999
Q ss_pred hCCccccChhcHHHHHHHHhhcCcc
Q psy17360 90 YKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 90 Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|+|++.++.+++.+++.+|++|+++
T Consensus 94 Yt~~~~~~~~~~~~ll~~A~~~~~~ 118 (172)
T 3htm_A 94 YTGKAPNLDKMADDLLAAADKYALE 118 (172)
T ss_dssp HHSCCTTGGGTHHHHHHHHHHTTCH
T ss_pred hCCCCCCcHHHHHHHHHHHHHhCcH
Confidence 9999999999999999999999985
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=146.41 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=94.4
Q ss_pred CchHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchhhC
Q psy17360 13 SFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFMYK 91 (115)
Q Consensus 13 ~~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~Yt 91 (115)
-.++++.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.+.+.+. ...|.+++++++.|+.+++|+|+
T Consensus 7 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhcc
Confidence 44568999999999999999999999999999999999999999999999876544 45899999999999999999999
Q ss_pred CccccChhcHHHHHHHHhhcCcc
Q psy17360 92 GEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 92 g~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
|.+.++.+++.+++.+|++|+++
T Consensus 87 ~~~~~~~~~~~~ll~~A~~~~~~ 109 (145)
T 4eoz_A 87 GKAPNLDKMADDLLAAADKYALE 109 (145)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCH
T ss_pred CccCCcHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999985
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=3.3e-24 Score=148.74 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhhcCCeeeEEEEECCeEEeeehhehhccCHHHHHhhccCCCCC-CeeEEcCCCCHHHHHHhhchhhCC
Q psy17360 14 FGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP-NILIILDGTSSGNMSALLEFMYKG 92 (115)
Q Consensus 14 ~~~~l~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~Ytg 92 (115)
.++.+.+.+.+++.++.+|||+|.++|+.|+|||.||+++|+||++||.+.+.+. ...|.+++++++.|+.+|+|+|||
T Consensus 157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG 236 (312)
T ss_dssp CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence 3457899999999999999999999999999999999999999999999876655 458999999999999999999999
Q ss_pred ccccChhcHHHHHHHHhhcCcc
Q psy17360 93 EVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 93 ~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
.+.+..+++.+++.+|++|+++
T Consensus 237 ~~~~~~~~~~~ll~~A~~~~~~ 258 (312)
T 3hqi_A 237 KAPNLDKMADDLLAAADKYALE 258 (312)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCH
T ss_pred CCCChHHHHHHHHHHHHHhCHH
Confidence 9999889999999999999985
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.57 E-value=1.7e-14 Score=84.54 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=64.9
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhcc--CCCCC-CeeEEcCCCCHHHHHHhhchhh-----C---Cccc---cCh
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEA--APFCP-NILIILDGTSSGNMSALLEFMY-----K---GEVH---VSQ 98 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~l~~~Y-----t---g~~~---~~~ 98 (115)
|+++. +|+.|.|||.+ ++.|++|++||.+ ...+. ...|.++++++..++.+++|+| + +.+. ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 45554 67999999999 9999999999986 33332 5589999999999999999999 5 6777 889
Q ss_pred hcHHHHHHHHhhcCc
Q psy17360 99 ESLSGFLKAAESLQL 113 (115)
Q Consensus 99 ~~~~~ll~~a~~l~i 113 (115)
+++.+|+.||++|+.
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999873
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.51 E-value=4.3e-14 Score=89.66 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhcc-CCC-C-CCeeEEcCCCCHHHHHHhhchhhCCc----------------
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEA-APF-C-PNILIILDGTSSGNMSALLEFMYKGE---------------- 93 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~-~~~-~-~~~~i~~~~~~~~~~~~~l~~~Ytg~---------------- 93 (115)
|+|.. +|+.|.+||.+ ++.|++|++||.+ +.. + ....|.++++++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 66765 78999999999 8999999999987 433 2 23579999999999999999999987
Q ss_pred ----------cccChhcHHHHHHHHhhcCcc
Q psy17360 94 ----------VHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 94 ----------~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.++.+++.+|+.||++|+|.
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~ 112 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIK 112 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHH
Confidence 778899999999999999974
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.27 E-value=9.7e-12 Score=77.37 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=66.5
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCc-------------------
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGE------------------- 93 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~------------------- 93 (115)
|++.. +|+.|.+|+.+ +..|.++++|+.... ...|.+++++..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHHHHTTCC----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhh
Confidence 56666 67999999998 789999999998642 3469999999999999999999754
Q ss_pred -------cccChhcHHHHHHHHhhcCcc
Q psy17360 94 -------VHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 94 -------~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.++.+++.+|+.||++|+|.
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~ 107 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIK 107 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhh
Confidence 567888999999999999874
No 24
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.14 E-value=2.1e-10 Score=67.25 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=65.7
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCc--------------cccCh
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGE--------------VHVSQ 98 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~--------------~~~~~ 98 (115)
|++.. +|..|.+++.+ +..|..++.|+..+.......|.+++++...++.+++|+|... ..++.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~ 84 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPT 84 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCH
Confidence 66666 78999999997 7889999999987543334579999999999999999998532 24677
Q ss_pred hcHHHHHHHHhhcCc
Q psy17360 99 ESLSGFLKAAESLQL 113 (115)
Q Consensus 99 ~~~~~ll~~a~~l~i 113 (115)
+.+.+|+.||++|++
T Consensus 85 ~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 85 EMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 889999999999985
No 25
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.06 E-value=1.4e-11 Score=78.18 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=37.8
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCCCCCCeeEEcCCCCHHHHHHhhchhhCCc-------------------
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALLEFMYKGE------------------- 93 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~------------------- 93 (115)
|+|.. +|+.|.+|+.+ +..|+++++|+.... ....|.+++++..+++.|++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSCHHHHHHHHHC------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 55654 78999999998 789999999997643 23479999999999999999999875
Q ss_pred --------cccChhcHHHHHHHHhhcCcc
Q psy17360 94 --------VHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 94 --------~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.++.+++.+|+.||++|+|.
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~ 111 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIK 111 (160)
T ss_dssp ------------------CHHHHHHTTCH
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHH
Confidence 356778899999999999874
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.03 E-value=7.9e-10 Score=64.43 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=63.1
Q ss_pred EEEEE-CCeEEeeehhehhccCHHHHHhhccCC--CC-CCeeEEcCCCCHHHHHHhhchhhCCc-----------cccCh
Q psy17360 34 VTLFC-EGVTFKAHKIILAACSKHFQDLFEAAP--FC-PNILIILDGTSSGNMSALLEFMYKGE-----------VHVSQ 98 (115)
Q Consensus 34 v~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~l~~~Ytg~-----------~~~~~ 98 (115)
|++.. +|..|.+++.+ +..|..++.|+.... .+ ....|.+++++...++.+++|+|... ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 45655 78999999997 788999999998632 22 23579999999999999999998532 24678
Q ss_pred hcHHHHHHHHhhcCc
Q psy17360 99 ESLSGFLKAAESLQL 113 (115)
Q Consensus 99 ~~~~~ll~~a~~l~i 113 (115)
+.+.+|+.||++|++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999985
No 27
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.65 E-value=8.3e-08 Score=57.31 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred eEEEE-ECCeEEeeehhehhccCHHHHHhhccCC--CC-CCeeEEcCCCCHHHHHHhhchhhCCc-----------cccC
Q psy17360 33 DVTLF-CEGVTFKAHKIILAACSKHFQDLFEAAP--FC-PNILIILDGTSSGNMSALLEFMYKGE-----------VHVS 97 (115)
Q Consensus 33 Dv~l~-~~~~~~~~Hr~vL~~~S~~f~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~l~~~Ytg~-----------~~~~ 97 (115)
-|+|. .+|..|.+.+.+ +..|..++.|+.... .+ ....|.+++++...++.+++|++... ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 36666 477999999995 678999999998532 12 23479999999999999999997432 2467
Q ss_pred hhcHHHHHHHHhhcCc
Q psy17360 98 QESLSGFLKAAESLQL 113 (115)
Q Consensus 98 ~~~~~~ll~~a~~l~i 113 (115)
.+.+.+|+.||++|+|
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7889999999999985
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.65 E-value=1.3e-07 Score=60.30 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=62.3
Q ss_pred eEEEEE-CCeEEeeehhehhccCHHHHHhhccCCC-----CCCeeEEcCCCCHHHHHHhhchhhCCc-------------
Q psy17360 33 DVTLFC-EGVTFKAHKIILAACSKHFQDLFEAAPF-----CPNILIILDGTSSGNMSALLEFMYKGE------------- 93 (115)
Q Consensus 33 Dv~l~~-~~~~~~~Hr~vL~~~S~~f~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~~~Ytg~------------- 93 (115)
-|+|.. +|..|.+++.+ +..|..++.|+..... .....|.+++++..+++.|++|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466655 67899999998 6789999999986432 112579999999999999999996432
Q ss_pred ------------cccChhcHHHHHHHHhhcCcc
Q psy17360 94 ------------VHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 94 ------------~~~~~~~~~~ll~~a~~l~i~ 114 (115)
+.++.+.+.+|+.||++|+|.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk 119 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIK 119 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcH
Confidence 245667889999999999874
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.57 E-value=2.8e-07 Score=54.51 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=63.8
Q ss_pred eEEEEECCeEEeeehhehhccC-HHHHHhhccCCC-----CCCeeEEcCCCCHHHHHHhhchhhCCccccChh-cHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACS-KHFQDLFEAAPF-----CPNILIILDGTSSGNMSALLEFMYKGEVHVSQE-SLSGFL 105 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S-~~f~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~-~~~~ll 105 (115)
-|.+.|||+.|...+..|+... ++|..|+.+... .....+.+ +-++..|+.||+|+.+|++.++.+ ....++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 4788999999999999998875 578888865321 12334555 579999999999999999887543 457899
Q ss_pred HHHhhcCcc
Q psy17360 106 KAAESLQLL 114 (115)
Q Consensus 106 ~~a~~l~i~ 114 (115)
+.|++|+|+
T Consensus 86 ~Ea~fy~l~ 94 (107)
T 3drz_A 86 EEAEFYNIT 94 (107)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHCCCH
Confidence 999999985
No 30
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=97.95 E-value=1.2e-05 Score=48.07 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=61.7
Q ss_pred eEEEEECCeEEeeehhehhccC-HHHHHhhccCC--CCCCeeEEcCCCCHHHHHHhhchhhCCccccCh-hcHHHHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACS-KHFQDLFEAAP--FCPNILIILDGTSSGNMSALLEFMYKGEVHVSQ-ESLSGFLKAA 108 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S-~~f~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~-~~~~~ll~~a 108 (115)
-|+|.|||+.|...+..|.... +.+..|+.... ......+.++ -++..|+.||+|+-+|++.++. -....+++-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD-RHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC-SCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe-cChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 4789999999999999998763 34556655321 1223356664 6999999999999999988754 3568899999
Q ss_pred hhcCcc
Q psy17360 109 ESLQLL 114 (115)
Q Consensus 109 ~~l~i~ 114 (115)
++|+|+
T Consensus 85 ~fy~i~ 90 (115)
T 3kvt_A 85 EFWGLD 90 (115)
T ss_dssp HHHTCC
T ss_pred HHhCCC
Confidence 999986
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.81 E-value=5.2e-05 Score=49.45 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=62.9
Q ss_pred eEEEEECCeEEeeehhehhccC-HHHHHhhccCCC-----CCCeeEEcCCCCHHHHHHhhchhhCCccccChh-cHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACS-KHFQDLFEAAPF-----CPNILIILDGTSSGNMSALLEFMYKGEVHVSQE-SLSGFL 105 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S-~~f~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~-~~~~ll 105 (115)
=|.|.|||+.|...+..|.... ++|..||.+... .....+.++ -++..|+.||+|+-+|.+.++.+ ....++
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID-RDP~~F~~ILnyLRtG~L~lP~~~~~~~l~ 91 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID-RDPTYFGPVLNYLRHGKLVINKDLAEEGVL 91 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC-SCSTTHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec-CChHHHHHHHHHhcCCccCCCCCCCHHHHH
Confidence 4778999999999999998764 578888865321 123356664 69999999999999999987543 346799
Q ss_pred HHHhhcCcc
Q psy17360 106 KAAESLQLL 114 (115)
Q Consensus 106 ~~a~~l~i~ 114 (115)
.-|++|+|+
T Consensus 92 eEA~FygL~ 100 (202)
T 3drx_A 92 EEAEFYNIT 100 (202)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHCCcH
Confidence 999999985
No 32
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=97.74 E-value=3.6e-05 Score=44.85 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=58.5
Q ss_pred EEEEECCeEEeeehhehhccC-HHHHHhhccC--CCCCCeeEEcCCCCHHHHHHhhchhhC-CccccCh-hcHHHHHHHH
Q psy17360 34 VTLFCEGVTFKAHKIILAACS-KHFQDLFEAA--PFCPNILIILDGTSSGNMSALLEFMYK-GEVHVSQ-ESLSGFLKAA 108 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~S-~~f~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~Yt-g~~~~~~-~~~~~ll~~a 108 (115)
|++.|||+.|...+..|+..- +.+..++... .......+.+ +-++..|+.||+|+-+ |++.++. -.+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678999999999999997652 2344444321 1112335666 4689999999999998 8987643 3578899999
Q ss_pred hhcCcc
Q psy17360 109 ESLQLL 114 (115)
Q Consensus 109 ~~l~i~ 114 (115)
++|+|+
T Consensus 82 ~fy~i~ 87 (100)
T 1t1d_A 82 KFYELG 87 (100)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 999985
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=97.67 E-value=0.00012 Score=44.19 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=58.0
Q ss_pred eEEEEECCeEEeeehhehhccCHHHHHhhccC-----CCCCCeeEEcCCCCHHHHHHhhchhhCCccccChh-cHHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAA-----PFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQE-SLSGFLK 106 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~~-~~~~ll~ 106 (115)
-|.|.|||+.|..-+..|.....- ++... .......+.++ -++..|+.||+|+-+|++.++.+ .+..+++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEEC-SCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEEc-CChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 578899999999999999765321 22221 11123356664 59999999999999999887543 5788999
Q ss_pred HHhhcCcc
Q psy17360 107 AAESLQLL 114 (115)
Q Consensus 107 ~a~~l~i~ 114 (115)
-|++|+|+
T Consensus 90 Ea~fy~i~ 97 (124)
T 1s1g_A 90 ELAFYGIL 97 (124)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99999986
No 34
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=97.40 E-value=8.7e-05 Score=43.57 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=56.7
Q ss_pred EEEEECCeEEeeehhehhccCH-HHHHhhccC--CCCCCeeEEcCCCCHHHHHHhhchhhCCccccCh-hcHHHHHHHHh
Q psy17360 34 VTLFCEGVTFKAHKIILAACSK-HFQDLFEAA--PFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQ-ESLSGFLKAAE 109 (115)
Q Consensus 34 v~l~~~~~~~~~Hr~vL~~~S~-~f~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~-~~~~~ll~~a~ 109 (115)
|.+.|||+.|...+..|..... .+... ... .......+.++ -++..|+.||+|+-+|++.++. -.+..+++-|+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~ 79 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELA 79 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 6889999999999999976532 22221 000 00112355564 5999999999999999988654 35788999999
Q ss_pred hcCcc
Q psy17360 110 SLQLL 114 (115)
Q Consensus 110 ~l~i~ 114 (115)
+|+|+
T Consensus 80 fy~i~ 84 (105)
T 1nn7_A 80 FFGLI 84 (105)
T ss_dssp HHTCC
T ss_pred HcCCC
Confidence 99986
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=97.39 E-value=0.00025 Score=43.70 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=58.0
Q ss_pred eEEEEECCeEEeeehhehhccCHHHHHhhccCC-----CCCCeeEEcCCCCHHHHHHhhchhhCCccccCh-hcHHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACSKHFQDLFEAAP-----FCPNILIILDGTSSGNMSALLEFMYKGEVHVSQ-ESLSGFLK 106 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S~~f~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~Ytg~~~~~~-~~~~~ll~ 106 (115)
-|+|.|||+.|...+..|.....- ++.... ......+.++ -++..|+.||+|+-+|++.+.. -.+..+++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEEC-SCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEEe-CCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 588899999999999999765321 222210 1123356664 5999999999999999988754 35788999
Q ss_pred HHhhcCcc
Q psy17360 107 AAESLQLL 114 (115)
Q Consensus 107 ~a~~l~i~ 114 (115)
-|++|+|+
T Consensus 112 Ea~fy~i~ 119 (140)
T 2nz0_B 112 ELAFYGIL 119 (140)
T ss_dssp HHHHHTCC
T ss_pred HHHHcCCC
Confidence 99999986
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=95.23 E-value=0.028 Score=41.46 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=56.9
Q ss_pred eEEEEECCeEEeeehhehhccCHH-HHHhhcc--CCCCCCeeEEcCCCCHHHHHHhhchhhC-CccccChh-cHHHHHHH
Q psy17360 33 DVTLFCEGVTFKAHKIILAACSKH-FQDLFEA--APFCPNILIILDGTSSGNMSALLEFMYK-GEVHVSQE-SLSGFLKA 107 (115)
Q Consensus 33 Dv~l~~~~~~~~~Hr~vL~~~S~~-f~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~Yt-g~~~~~~~-~~~~ll~~ 107 (115)
-|.+.|||+.|...+..|.....- +..++.. .......+..+ |-++..|+.+|+|+.+ |++..+.+ ....+.+-
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 477899999999999999765322 2222211 01112335556 4699999999999999 99876443 56778999
Q ss_pred HhhcCcc
Q psy17360 108 AESLQLL 114 (115)
Q Consensus 108 a~~l~i~ 114 (115)
|++|+++
T Consensus 132 ~~f~~i~ 138 (514)
T 2r9r_B 132 IRFYELG 138 (514)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 9999985
No 37
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=54.22 E-value=4.7 Score=17.06 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.6
Q ss_pred hcHHHHHHHHhhc
Q psy17360 99 ESLSGFLKAAESL 111 (115)
Q Consensus 99 ~~~~~ll~~a~~l 111 (115)
.+++.|+++|.++
T Consensus 3 ~nvq~LLeAAeyL 15 (26)
T 1pd7_B 3 MNIQMLLEAADYL 15 (26)
T ss_dssp CSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4678899999876
No 38
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=38.09 E-value=14 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.5
Q ss_pred HHHHHhhchhhCCc
Q psy17360 80 GNMSALLEFMYKGE 93 (115)
Q Consensus 80 ~~~~~~l~~~Ytg~ 93 (115)
...+.+++|||.|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 44678999999995
No 39
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=34.40 E-value=42 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
+..+.+.|.+...+| +|++|.+||
T Consensus 80 S~~fA~~l~~~~~~G--~~i~FvIGG 103 (163)
T 1o6d_A 80 SEEFADFLKDLEMKG--KDITILIGG 103 (163)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 456788888888888 599999987
No 40
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=32.28 E-value=41 Score=20.66 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
+..+.+.|.+...+| +|++|.+||
T Consensus 81 S~~fA~~l~~~~~~g--~~i~FvIGG 104 (155)
T 1ns5_A 81 TPQLAAELERWKLDG--RDVSLLIGG 104 (155)
T ss_dssp HHHHHHHHHHHHHHC--SCEEEEECB
T ss_pred HHHHHHHHHHHHhcC--CeEEEEEEC
Confidence 446778888888887 599999986
No 41
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=31.09 E-value=70 Score=19.47 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.9
Q ss_pred eCCchHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 11 WSSFGNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
.++....+.+.+.+...++ +|+++..+|
T Consensus 51 v~Dd~~~I~~~l~~a~~~~--~DlVittGG 78 (167)
T 2g2c_A 51 VPEGYDTVVEAIATALKQG--ARFIITAGG 78 (167)
T ss_dssp ECSSHHHHHHHHHHHHHTT--CSEEEEESC
T ss_pred eCCCHHHHHHHHHHHHhCC--CCEEEECCC
Confidence 4678888999998887654 799999987
No 42
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.19 E-value=62 Score=16.43 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCCHHHHHHhhchhhCCcc---ccChhcHHHHHHHHhhcCc
Q psy17360 76 GTSSGNMSALLEFMYKGEV---HVSQESLSGFLKAAESLQL 113 (115)
Q Consensus 76 ~~~~~~~~~~l~~~Ytg~~---~~~~~~~~~ll~~a~~l~i 113 (115)
+++...+..+++ |.- .++.+....+..+|+.+|.
T Consensus 11 GVS~sTVSrvLn----g~~~~~~vs~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 11 GVSRTTASYVIN----GKAKQYRVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp TSCHHHHHHHHH----TCTTTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 355555555553 555 6888888888888888764
No 43
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=21.85 E-value=1.3e+02 Score=18.58 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 15 GNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 15 ~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
+..+.+.|.+...+|. +|++|.+||
T Consensus 85 S~~fA~~l~~~~~~G~-~~i~FvIGG 109 (167)
T 1to0_A 85 SEELADTIDKLATYGK-SKVTFVIGG 109 (167)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEEECC
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEEEC
Confidence 4467777777777763 389999987
No 44
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.70 E-value=1e+02 Score=19.08 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=21.8
Q ss_pred eCCchHHHHHHHHHHhhcCCeeeEEEEECC
Q psy17360 11 WSSFGNNLVTTFETLFKSESLTDVTLFCEG 40 (115)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~~~~ 40 (115)
.++....+.+.+.+...+ +|+++..||
T Consensus 45 v~Dd~~~I~~~l~~a~~~---~DlVittGG 71 (172)
T 3kbq_A 45 VMDDLDEIGWAFRVALEV---SDLVVSSGG 71 (172)
T ss_dssp ECSCHHHHHHHHHHHHHH---CSEEEEESC
T ss_pred eCCCHHHHHHHHHHHHhc---CCEEEEcCC
Confidence 367788888888887765 699999976
No 45
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=21.41 E-value=1e+02 Score=18.48 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=19.0
Q ss_pred CHHHHHHhhchhhCCccccChhcHHHHHHHH
Q psy17360 78 SSGNMSALLEFMYKGEVHVSQESLSGFLKAA 108 (115)
Q Consensus 78 ~~~~~~~~l~~~Ytg~~~~~~~~~~~ll~~a 108 (115)
-+++|++++.|+|-.. ..+.+.+++...
T Consensus 98 ~At~fEALiGaLYLd~---~~erl~~ll~~~ 125 (137)
T 2gsl_A 98 EATALEAIIGAMYLLK---KEEEIKKIINIV 125 (137)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 5789999999999542 444555554443
No 46
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.54 E-value=50 Score=19.29 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=18.8
Q ss_pred hhhCCccccChhcHHHHHHHHhhcCcc
Q psy17360 88 FMYKGEVHVSQESLSGFLKAAESLQLL 114 (115)
Q Consensus 88 ~~Ytg~~~~~~~~~~~ll~~a~~l~i~ 114 (115)
++|+-.-+++++..+.+.+.|..+|++
T Consensus 110 ~llsR~~~l~~e~~~~f~~~~~~~G~~ 136 (151)
T 1e5p_A 110 VVAGKGNALTPEENEILVQFAHEKKIP 136 (151)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 455555566777777788888877765
Done!