RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17360
(115 letters)
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 85.0 bits (211), Expect = 7e-23
Identities = 26/111 (23%), Positives = 54/111 (48%)
Query: 3 PQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFE 62
+ + + N++ K + L DVTL E F+AH+ +LAACS++F
Sbjct: 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALV 63
Query: 63 AAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
++ + + ++ LL+F Y ++ +S+E++ ++ AE L++
Sbjct: 64 GQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRM 114
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 83.9 bits (208), Expect = 3e-22
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 2 DPQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLF 61
F + S N++ + K + L DVT+ EG F+AH+ +LAACS +F
Sbjct: 7 SESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRI 66
Query: 62 EAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ + + + L++F Y ++ +S++++ + E L +
Sbjct: 67 VGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 82.7 bits (205), Expect = 5e-22
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 11 WSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNI 70
+ +++ + L D T +GV FKAHK +LAACS++F+ LF
Sbjct: 7 FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK----D 62
Query: 71 LIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
++ LD +++ + +LEFMY ++ +S E++ L A LQ+
Sbjct: 63 VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQM 105
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 82.7 bits (205), Expect = 6e-22
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 1 MDPQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDL 60
+ Q ++ +FGN+++ DV++ +G FKAH+ +LAA S +F+DL
Sbjct: 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL 62
Query: 61 FEAAPFCPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
F + ++ + + +L F Y G + ++ + A LQ+
Sbjct: 63 FNNSR--SAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQI 113
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 82.7 bits (205), Expect = 6e-22
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 10 KWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPN 69
+ S N++ + K + L DVT+F EG F+AH+ +LAACS +F
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGEL 67
Query: 70 ILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ + + + L++F Y ++ +S+E++ K E L +
Sbjct: 68 NITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 81.8 bits (203), Expect = 9e-22
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 8 CLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF- 66
+ + +++++ L DV + EG F H+ +LAACS++F+ LF +
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 67 CPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ +D S+ ++AL++F Y + VS ++ L AA L++
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEI 108
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 81.5 bits (202), Expect = 1e-21
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNIL 71
S +L+ ++ L D T+ FKAH+ +LA+ S++F ++ + N+
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIY-RSTSENNVF 61
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ + LLEF+Y G +++ ++ +AA+ L++
Sbjct: 62 LDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 81.5 bits (202), Expect = 1e-21
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNIL 71
S L+ + + +L DV + + F AH+ +LA SK F+ LF +
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQH 64
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
LD S +LE+ Y + E L L AAE L++
Sbjct: 65 YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 81.2 bits (201), Expect = 2e-21
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 1 MDPQQQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDL 60
M+ ++ + +L+ + DVT+ E F+AHK IL+A S +F L
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60
Query: 61 FEAAPFCPNILIILDGTSSGNMSALLEFMYKGE-VHVSQESLSGFLKAAESLQL 113
F A ++ L + + +L ++Y + V V + L +K+ + L +
Sbjct: 61 FSVA----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGV 110
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 80.7 bits (200), Expect = 3e-21
Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 7 FCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF 66
++++ ++++ L + LTDV + F+AHK +L ACS F +F
Sbjct: 5 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 64
Query: 67 -CPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+++ + + + LL+FMY +++ + ++ + A LQ+
Sbjct: 65 RNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 80.0 bits (198), Expect = 6e-21
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 11 WSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNI 70
+ ++ + D TL G+ FKAH +LA CS FQ L+
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDG---SGG 60
Query: 71 LIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
++L + LL+F Y G + ++ + L AA L++
Sbjct: 61 SVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 79.2 bits (196), Expect = 1e-20
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 27 KSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSALL 86
+L D + F AH ++LA S+ + + +G S + LL
Sbjct: 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ--------WALGEGISPSTFAQLL 77
Query: 87 EFMYKGEVHVSQESLSGFLKAAESLQL 113
F+Y V + L +AA +L +
Sbjct: 78 NFVYGESVELQPGELRPLQEAARALGV 104
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 79.2 bits (196), Expect = 2e-20
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNIL 71
S ++ + D TL G+ FKAH +LA CS FQ ++
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDG---TGGS 62
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
++L + LL+F Y G + ++ + L AA+ L++
Sbjct: 63 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRV 104
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 78.1 bits (193), Expect = 5e-20
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 5 QQFCLKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAA 64
Q + L+ + + D L +G K ILAA S + +
Sbjct: 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYN 80
Query: 65 PF---CPNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
P I L+G S M +L++++ G++ ++++++ ++AA+ L L
Sbjct: 81 PPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 132
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 74.1 bits (183), Expect = 2e-18
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 17 NLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLF-----EAAPFCPNIL 71
L L+++ TD L G F+AHK ILAA S F +F E+
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR---- 66
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ ++ ++ F+Y G+ + L AA+ L
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 108
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 73.4 bits (181), Expect = 6e-18
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 17 NLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLF-----EAAPFCPNIL 71
L L+++ TD L G F+AHK ILAA S F +F E+
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR---- 75
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ ++ ++ F+Y G+ + L AA+ L
Sbjct: 76 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 117
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 74.2 bits (183), Expect = 2e-17
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 12 SSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF---CP 68
L+ + + D L +G K ILAA S + + P
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGS 71
Query: 69 NILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
I L+G S M +L++++ G++ ++++++ ++AA+ L L
Sbjct: 72 TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 116
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 65.7 bits (161), Expect = 1e-15
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 24 TLFKSESLTDVTL----FCEGVTFKAHKIILAACSKHFQDLFEAAPFCPNIL-----IIL 74
++F +E + DV T AHK +LA S F A F ++ I +
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF-----YAMFYGDLAEVKSEIHI 55
Query: 75 DGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
LL++MY E+ + +++ L AA+ +
Sbjct: 56 PDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIV 94
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 67.6 bits (165), Expect = 6e-15
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 17 NLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLF-----EAAPFCPNIL 71
L L+++ TD L G F+AHK ILAA S F +F E+
Sbjct: 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR---- 215
Query: 72 IILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
+ ++ ++ F+Y G+ + L AA+ L
Sbjct: 216 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 257
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 66.1 bits (162), Expect = 2e-14
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 10 KWSSFGNNLVTTFETLFKSESLTDVTLFC---EGVTFKAHKIILAACSKHFQDLF----- 61
+ SS + L + D+TL G F+AH+ +LAA +++F L
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFS 70
Query: 62 EAAPFCPNI--LIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
E+ + G + A++E+MY G + VS S+ L+ A+ L
Sbjct: 71 ESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLL 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 3e-04
Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 48/147 (32%)
Query: 2 DPQQQFCLK--WSSFGN------------NLVTTFETLFKSESLTDVTLFCEGVTFKAHK 47
Q + K W + N L+ + + S S + K
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----------K 224
Query: 48 IILAACSKHFQDLFEAAPFCPNILIILDG------------------TS--SGNMSALLE 87
+ + + + L ++ P+ N L++L T+ L
Sbjct: 225 LRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 88 FMYKGEVHVSQESLSGFLKAAESLQLL 114
H+S + S L E LL
Sbjct: 284 ATTT---HISLDHHSMTLTPDEVKSLL 307
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 28.1 bits (62), Expect = 0.58
Identities = 8/68 (11%), Positives = 13/68 (19%), Gaps = 16/68 (23%)
Query: 5 QQFCLKWSSFGNNLVTTFETLFKSE-SLTDV-----TLFCEGVTFKAHKIILAACSKHFQ 58
QF +W L E + V T E +++
Sbjct: 230 IQFAFRW----------MNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPP 279
Query: 59 DLFEAAPF 66
Sbjct: 280 VTPTEPRV 287
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural
genomics, center for structural genomics, JCSG, protein
structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Length = 495
Score = 26.8 bits (58), Expect = 2.1
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 40 GVTFKAHKIILAACSKHFQDLFEAAPFCPNILIILDGTSSGNMSAL 85
GV + + ++A + H++ F I + G ++
Sbjct: 425 GVPLASQQAVVARAANHYKLSFA--DIARTITVDTPGLTAFKPHQF 468
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 11 WSSFGNNLVTTFETLF 26
W SF ++ LF
Sbjct: 289 WESFFVSVRKAITVLF 304
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 24.5 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 73 ILD-GTSSGNMSALLEFMYKGEVH 95
IL+ GT SG +AL+ + K +V+
Sbjct: 95 ILEVGTGSGWNAALISEIVKTDVY 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,618,386
Number of extensions: 83397
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 25
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)