RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17360
         (115 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 74.7 bits (183), Expect = 2e-19
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 9   LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP 68
           L+  S    L+     +  + +L DV +  +   F AH+ +LA  S     +FE      
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTS----KMFEILFHRN 61

Query: 69  NILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
           +    LD  S      +LE+ Y   +    E L   L AAE L++
Sbjct: 62  SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 72.1 bits (176), Expect = 3e-18
 Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 9   LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPF-C 67
           ++++   ++++     L   + LTDV +      F+AHK +L ACS  F  +F       
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 68  PNILIILDGTSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQL 113
            +++ +    +    + LL+FMY   +++ + ++   +  A  LQ+
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 108


>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
          2,3-Bisphosphoglycerate-independent phosphoglycerate
          mutase, catalytic domain {Bacillus stearothermophilus
          [TaxId: 1422]}
          Length = 275

 Score = 27.0 bits (58), Expect = 0.59
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 68 PNILIILDG 76
          P  LIILDG
Sbjct: 4  PVALIILDG 12


>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 182

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 1/62 (1%)

Query: 9   LKWSSFGNNLVTTFETLFKSESLTDVTLFCEGVTFKAHKIILAACSKHFQDLFEAAPFCP 68
           +     G N+  +      S       +F  G            C +  + +    P  P
Sbjct: 86  ILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGEN-DPCIQPGEVIQSYYPDQP 144

Query: 69  NI 70
            +
Sbjct: 145 KL 146


>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 25.9 bits (57), Expect = 1.4
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 70  ILIILDG-----TSSGNMSALLEFMYKGEVHVSQESLSGFLKAAESLQLL 114
           I+ ++ G     T +G  +      +  E ++  +SL  FL  A SL+ L
Sbjct: 567 IVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHL 616


>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 117

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 68  PNILIILDGTSSGNMSALLEFMYKGEVH 95
            N++      +  +  A+ EF+   +  
Sbjct: 87  VNVIGSFP-ANRTDSGAVYEFITSADGA 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 393,004
Number of extensions: 15772
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 6
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)