Query psy17361
Match_columns 219
No_of_seqs 169 out of 885
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 1.5E-56 3.2E-61 431.4 15.3 214 2-219 216-586 (707)
2 COG5245 DYN1 Dynein, heavy cha 99.7 6.7E-17 1.5E-21 160.0 9.6 145 1-150 2964-3113(3164)
3 KOG4404|consensus 43.5 22 0.00049 31.8 2.8 46 39-84 17-69 (350)
4 PF06115 DUF956: Domain of unk 34.3 7.4 0.00016 29.6 -1.4 20 92-111 46-65 (118)
5 KOG0936|consensus 33.3 35 0.00076 27.3 2.2 32 93-124 110-141 (182)
6 PHA02152 hypothetical protein 30.8 89 0.0019 22.2 3.7 60 57-125 19-79 (96)
7 PF13817 DDE_Tnp_IS66_C: IS66 29.2 26 0.00057 21.2 0.7 15 168-182 12-26 (39)
8 PF10375 GRAB: GRIP-related Ar 25.6 72 0.0016 16.3 1.8 16 113-128 3-18 (19)
9 PF06200 tify: tify domain; I 22.1 29 0.00063 20.7 -0.0 9 105-113 9-17 (36)
10 PF13559 DUF4129: Domain of un 21.2 1.3E+02 0.0027 19.6 3.0 32 95-126 39-70 (72)
11 PF09396 Thrombin_light: Throm 21.1 46 0.00099 21.2 0.7 8 202-209 8-15 (49)
12 cd05030 calgranulins Calgranul 21.1 1.8E+02 0.0039 20.3 4.0 54 73-127 1-59 (88)
13 PF05491 RuvB_C: Holliday junc 20.7 63 0.0014 22.7 1.4 15 114-128 7-21 (76)
14 PF02677 DUF208: Uncharacteriz 20.4 2.4E+02 0.0052 23.0 5.0 45 162-215 28-74 (176)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.5e-56 Score=431.39 Aligned_cols=214 Identities=36% Similarity=0.614 Sum_probs=167.3
Q ss_pred CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC----cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHH
Q psy17361 2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74 (219)
Q Consensus 2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sD 74 (219)
+|.+|||+|+||++ +|+|+||.++|++++++.++ +..+++++|+||||||||+||++|||+|||++||||++|
T Consensus 216 ~P~~lL~~s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sD 295 (707)
T PF03028_consen 216 FPISLLQSSIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSD 295 (707)
T ss_dssp S-HHHHHCSEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHH
T ss_pred CCHHHHHcccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHH
Confidence 69999999999999 99999999999998777664 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCC--------C---
Q psy17361 75 LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLA--------P--- 143 (219)
Q Consensus 75 l~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~--------p--- 143 (219)
|++|++++..++++...+.|||++++|++++++|||||||++|+|+|++|+++||++++++++ ..+. |
T Consensus 296 l~~a~~~l~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~-~~l~~~~~~~~~P~~~ 374 (707)
T PF03028_consen 296 LRAALDILDNWLDESSPESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPD-FQLSPDSGSYSIPDSN 374 (707)
T ss_dssp HHHHHHHHHHHHHHCSCCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT--EEET-TTTEE----S
T ss_pred HHHHHHHHHHHHhhccccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcch-hhcccCCCCccCCccc
Confidence 999999999999865568999999999999999999999999999999999999999999854 1111 1
Q ss_pred --------------------------------------------------------------------------------
Q psy17361 144 -------------------------------------------------------------------------------- 143 (219)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (219)
T Consensus 375 ~~~~~~~~i~~lp~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~ 454 (707)
T PF03028_consen 375 SLEDYIEWIEQLPDEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLF 454 (707)
T ss_dssp SHHHHHHHHCTS-SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-------------
T ss_pred cHHHHHHHHHhCCCCCCccccCCCccHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccC
Confidence
Q ss_pred ------------------------------------------------CCCCCCC---------CCCCCchhhhhhccCC
Q psy17361 144 ------------------------------------------------GVVLPSS---------TNLGTPDDWQSIWSGS 166 (219)
Q Consensus 144 ------------------------------------------------g~~~~~~---------~~~~vP~~W~~~~~~p 166 (219)
|...+++ +.++||+.|.+.++++
T Consensus 455 ~~~~~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s 534 (707)
T PF03028_consen 455 PIEEVKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPS 534 (707)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---S
T ss_pred CHHHHhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCC
Confidence 1111111 6799999999986655
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHh-cccCCCCceeCCCCCCchHHHHHHHhhhcC
Q psy17361 167 -GNPLLYIRSVVSRAVTVHKCYQV-SSTYWRSPVDLSGLFHPHAFLSVLKQHTAR 219 (219)
Q Consensus 167 -~~~~~Wl~~l~~R~~~l~~w~~~-~~~~l~~~~~ls~~f~P~~fl~al~Q~~aR 219 (219)
..+.+|+++|+.|++++++|.+. + .|.++|||+||||++||||+||++||
T Consensus 535 ~~~l~~Wl~dL~~Rv~~l~~w~~~~~---~p~~~wLs~ff~P~aFLtAlrQ~~AR 586 (707)
T PF03028_consen 535 PKPLSSWLQDLIKRVEQLQRWASNSG---QPKSFWLSGFFNPQAFLTALRQEYAR 586 (707)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHH----------B-GGGSS-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccC---CceEEecccccChHHHHHHHHHHHHH
Confidence 46779999999999999999998 4 48999999999999999999999997
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.69 E-value=6.7e-17 Score=160.00 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=126.0
Q ss_pred CCCHHHHhccchhcc---hHHHHHHHHHHhcccccccC--cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHHH
Q psy17361 1 MKKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDL 75 (219)
Q Consensus 1 ~~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sDl 75 (219)
|+|..+|+.+-.+++ ||++.++...+.. ..-.+. ....-+..|.|+|+||.+.+|-.++|-|||++|.|+++|+
T Consensus 2964 ~lp~qlL~~~dsfv~~~~p~~~~~~~dL~e~-~~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df 3042 (3164)
T COG5245 2964 MLPIQLLIAIDSFVSSTYPETGCGYADLVEI-DRYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDF 3042 (3164)
T ss_pred cccHHHHHHhhhhhhccCCcccccHHHHHhc-CcccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchH
Confidence 789999999999999 9999999999854 333333 4445588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCCCCCCCCCC
Q psy17361 76 NAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSS 150 (219)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~pg~~~~~~ 150 (219)
+.+..+|++.+-.+..++++|...|.++.+|+||||++-..|.++++.||..++..+. +.++.||..++.|
T Consensus 3043 ~f~T~~L~NIl~~nhln~~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~~----~sQi~~~V~~~dp 3113 (3164)
T COG5245 3043 EFKTHLLKNILFLNHLNARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHET----SSQILASVPGGDP 3113 (3164)
T ss_pred HHHHHHHHHHHhccccccccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCcc----cchhccCCcCCCh
Confidence 9999999998764345789999999999999999999999999999999999998764 3567777777665
No 3
>KOG4404|consensus
Probab=43.45 E-value=22 Score=31.79 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHH-----HHHHHhhC--CCCCccccccCHHHHHHHHHHHHH
Q psy17361 39 QGRALFTLAWFHAL-----IQERRTYI--PQGWAKFYEFNDSDLNAALNILNA 84 (219)
Q Consensus 39 ~~~l~f~L~~fHav-----l~eR~~y~--p~Gw~~~YeF~~sDl~~~~~~l~~ 84 (219)
..+|+++.++||++ ..||.+.. -.-++++|.+|+.|++.-..++..
T Consensus 17 ~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~ 69 (350)
T KOG4404|consen 17 FTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILK 69 (350)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 45899999999998 33343322 244668999999999976666554
No 4
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=34.35 E-value=7.4 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=17.9
Q ss_pred CCCchhhHHhhhhhhccccc
Q psy17361 92 GGVKWDYIHGLLGNAIYGGR 111 (219)
Q Consensus 92 ~~i~w~~l~~l~~~iiYGGr 111 (219)
=.|||+.+.+..+++.++||
T Consensus 46 IQIPW~eI~~V~a~V~fkgk 65 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGK 65 (118)
T ss_pred EEeChhheeEEEEEEEECCC
Confidence 36999999999999999876
No 5
>KOG0936|consensus
Probab=33.27 E-value=35 Score=27.26 Aligned_cols=32 Identities=16% Similarity=0.460 Sum_probs=25.4
Q ss_pred CCchhhHHhhhhhhccccccCChHHHHHHHHH
Q psy17361 93 GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSY 124 (219)
Q Consensus 93 ~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~ 124 (219)
-+.|+.+++++.|++.||.|-...=-++..+.
T Consensus 110 iF~~~k~h~iL~EiV~GGmVlETn~neIv~av 141 (182)
T KOG0936|consen 110 IFNWQKVHAILAEIVMGGMVLETNMNEIVAAV 141 (182)
T ss_pred eeeHHHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 35799999999999999999876655555444
No 6
>PHA02152 hypothetical protein
Probab=30.83 E-value=89 Score=22.22 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=34.5
Q ss_pred HhhCCCCCccccccCHHHHHHHHHHHHHHHhhc-CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHH
Q psy17361 57 RTYIPQGWAKFYEFNDSDLNAALNILNARLSQD-GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYL 125 (219)
Q Consensus 57 ~~y~p~Gw~~~YeF~~sDl~~~~~~l~~~~~~~-~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l 125 (219)
.+||+.|| .+.+|++-|.++|.-.=... +..+-+=..--+. |=.||+--..|-.-+.+++
T Consensus 19 ~~ygnhgw-----isp~~i~~a~~ii~vv~g~~~g~~~~~~~ew~~f----issgr~~~~~dy~km~~ii 79 (96)
T PHA02152 19 VRYGNHGW-----VSPSNIRYAENIINVVNGARFGEENKPVAEWFYF----ISSGRVYFKEDYDKMATIV 79 (96)
T ss_pred ccccccCc-----cChhHHHHHHHHHHhhcccchhhcCCchhhhhhh----hhcchhhHHhhHHHHHHHH
Confidence 46999999 56689999988887531100 0111111111222 2368887777766666655
No 7
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=29.23 E-value=26 Score=21.18 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHHH
Q psy17361 168 NPLLYIRSVVSRAVT 182 (219)
Q Consensus 168 ~~~~Wl~~l~~R~~~ 182 (219)
+|-.||++++.|+..
T Consensus 12 ~P~~yL~~vL~~i~~ 26 (39)
T PF13817_consen 12 NPYAYLTDVLERIPN 26 (39)
T ss_pred CHHHHHHHHHHHHcc
Confidence 788999999999544
No 8
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=25.57 E-value=72 Score=16.30 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHHHh
Q psy17361 113 DNAQDMKVLSSYLQFY 128 (219)
Q Consensus 113 ~d~~D~r~L~~~l~~~ 128 (219)
++..|++++..++=+|
T Consensus 3 e~~VDk~lisN~~l~F 18 (19)
T PF10375_consen 3 EDNVDKRLISNLLLSF 18 (19)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 4678999888776554
No 9
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=22.08 E-value=29 Score=20.71 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.1
Q ss_pred hhccccccC
Q psy17361 105 NAIYGGRID 113 (219)
Q Consensus 105 ~iiYGGrv~ 113 (219)
.|.|||+|-
T Consensus 9 TIfY~G~V~ 17 (36)
T PF06200_consen 9 TIFYGGQVC 17 (36)
T ss_pred EEEECCEEE
Confidence 578999984
No 10
>PF13559 DUF4129: Domain of unknown function (DUF4129)
Probab=21.19 E-value=1.3e+02 Score=19.62 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.2
Q ss_pred chhhHHhhhhhhccccccCChHHHHHHHHHHH
Q psy17361 95 KWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQ 126 (219)
Q Consensus 95 ~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~ 126 (219)
+...|-.+...+.|||+--+..|.+-+...++
T Consensus 39 ~~~~lt~~ye~~~Yg~~~~~~~~~~~~~~~~~ 70 (72)
T PF13559_consen 39 ALEELTRLYERARYGGRPPSAEEFQRAREALR 70 (72)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Confidence 57788888899999999877777665555443
No 11
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=21.13 E-value=46 Score=21.22 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=7.0
Q ss_pred CCCCchHH
Q psy17361 202 GLFHPHAF 209 (219)
Q Consensus 202 ~~f~P~~f 209 (219)
-||+|.+|
T Consensus 8 ~FFn~kTF 15 (49)
T PF09396_consen 8 TFFNPKTF 15 (49)
T ss_dssp STSTHHHH
T ss_pred cccCcccc
Confidence 58999998
No 12
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=21.09 E-value=1.8e+02 Score=20.27 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcC-----CCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHH
Q psy17361 73 SDLNAALNILNARLSQDG-----MGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127 (219)
Q Consensus 73 sDl~~~~~~l~~~~~~~~-----~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~ 127 (219)
+||+-|+..+...+.+.. .+.|+.+.++.++.. .+|-.++...+..-++.+++.
T Consensus 1 ~~~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~-~~g~~~t~~~~~~~v~~i~~~ 59 (88)
T cd05030 1 TELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEK-ELPNFLKKEKNQKAIDKIFED 59 (88)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHH-HhhHhhccCCCHHHHHHHHHH
Confidence 366677766665544321 347889999988854 445445433334444445543
No 13
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=20.72 E-value=63 Score=22.65 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHh
Q psy17361 114 NAQDMKVLSSYLQFY 128 (219)
Q Consensus 114 d~~D~r~L~~~l~~~ 128 (219)
|..|+++|+++++.|
T Consensus 7 d~~D~~yL~~l~~~f 21 (76)
T PF05491_consen 7 DELDRRYLKTLIENF 21 (76)
T ss_dssp BHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHc
Confidence 788999999999854
No 14
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.42 E-value=2.4e+02 Score=22.96 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=31.6
Q ss_pred hccCCC-Ch-HHHHHHHHHHHHHHHHHHHhcccCCCCceeCCCCCCchHHHHHHHh
Q psy17361 162 IWSGSG-NP-LLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQ 215 (219)
Q Consensus 162 ~~~~p~-~~-~~Wl~~l~~R~~~l~~w~~~~~~~l~~~~~ls~~f~P~~fl~al~Q 215 (219)
.++.|+ -| .+|.+ |.++++++.+..+ + +.++ .+ ++|+.|+.+++-
T Consensus 28 ~fyNPNIhP~~Ey~~----R~~~~~~~~~~~~--i-~~i~-~~-Y~~~~w~~~v~~ 74 (176)
T PF02677_consen 28 YFYNPNIHPYEEYER----RLEELKRFAEKLG--I-PLIE-GD-YDPEEWLRAVKG 74 (176)
T ss_pred EEeCCCCCcHHHHHH----HHHHHHHHHHHcC--C-CEEe-cC-CCHHHHHHHHhh
Confidence 467787 45 36766 8899999988862 1 2333 33 999999998863
Done!