Query psy17361
Match_columns 219
No_of_seqs 169 out of 885
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:26:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 7.3E-57 2.5E-61 475.5 13.9 216 2-219 2740-3125(3245)
2 4akg_A Glutathione S-transfera 100.0 6E-39 2.1E-43 338.0 14.0 140 2-148 2487-2633(2695)
3 3rf1_A Glycyl-tRNA synthetase 68.2 1.8 6.2E-05 36.5 1.4 38 173-214 27-68 (311)
4 3bei_A Prothrombin; serine pro 25.4 22 0.00075 21.2 0.7 8 202-209 3-10 (44)
5 3nxa_A Protein S100-A16; S100 24.1 1.7E+02 0.0058 19.8 5.8 54 73-127 4-63 (100)
6 3vej_A Ubiquitin-like protein 22.1 38 0.0013 20.0 1.3 14 92-105 4-17 (41)
7 2z8h_A Transcription regulator 18.9 69 0.0024 22.9 2.6 20 93-113 81-100 (138)
8 2a7o_A Huntingtin interacting 16.0 93 0.0032 22.4 2.5 22 108-129 43-64 (112)
9 3b9f_L Prothrombin; michaelis 15.7 46 0.0016 20.3 0.7 11 201-211 7-17 (49)
10 1j5w_A Glycyl-tRNA synthetase 13.3 33 0.0011 28.7 -0.6 14 201-214 43-56 (298)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=7.3e-57 Score=475.49 Aligned_cols=216 Identities=31% Similarity=0.589 Sum_probs=176.0
Q ss_pred CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC--cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHHHH
Q psy17361 2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLN 76 (219)
Q Consensus 2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sDl~ 76 (219)
+|++|||+|+|||+ +|||+||+|+|..++++.+. +..+++++|+||||||||||||+|||+|||++||||++||+
T Consensus 2740 fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~ 2819 (3245)
T 3vkg_A 2740 LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLR 2819 (3245)
T ss_dssp SCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHH
T ss_pred CCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHH
Confidence 79999999999999 99999999999998887776 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-------CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCC-------
Q psy17361 77 AALNILNARLSQD-------GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLA------- 142 (219)
Q Consensus 77 ~~~~~l~~~~~~~-------~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~------- 142 (219)
+|+++|++++++. .+++|||++|+|++|+|+|||||||+||||+|++|+++||++++++++ +.++
T Consensus 2820 ~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~-~~~~~~~~~~~ 2898 (3245)
T 3vkg_A 2820 GALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPD-FPLVPSIGLSV 2898 (3245)
T ss_dssp HHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSS-CEEEGGGTEEC
T ss_pred HHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCc-ccCCCCCCCCC
Confidence 9999999999753 125799999999999999999999999999999999999999998754 1111
Q ss_pred C-------------------------------------------------------------------------------
Q psy17361 143 P------------------------------------------------------------------------------- 143 (219)
Q Consensus 143 p------------------------------------------------------------------------------- 143 (219)
|
T Consensus 2899 P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 2978 (3245)
T 3vkg_A 2899 PEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGK 2978 (3245)
T ss_dssp CCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCcH
Confidence 1
Q ss_pred --------------------------------------------------------------CCCCCCC---------CC
Q psy17361 144 --------------------------------------------------------------GVVLPSS---------TN 152 (219)
Q Consensus 144 --------------------------------------------------------------g~~~~~~---------~~ 152 (219)
|..++++ ++
T Consensus 2979 ~~v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~ 3058 (3245)
T 3vkg_A 2979 AKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISK 3058 (3245)
T ss_dssp HC----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHc
Confidence 1111111 67
Q ss_pred CCCchhhhhhccCCCC-hHHHHHHHHHHHHHHHHHHHhcccCCCCceeCCCCCCchHHHHHHHhhhcC
Q psy17361 153 LGTPDDWQSIWSGSGN-PLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR 219 (219)
Q Consensus 153 ~~vP~~W~~~~~~p~~-~~~Wl~~l~~R~~~l~~w~~~~~~~l~~~~~ls~~f~P~~fl~al~Q~~aR 219 (219)
++||+.|.+..+++.+ +.+|++||+.|+++++.|.+.+ ...|.++|||||||||+||||+||++||
T Consensus 3059 ~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~~-~~~p~~~WLsgff~Pq~FLTA~~Q~~AR 3125 (3245)
T 3vkg_A 3059 GIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESS-DYSSIQVWLGGLLNPEAYITATRQSASQ 3125 (3245)
T ss_dssp -------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC--------CCGGGSSCHHHHHHHHHHHHHH
T ss_pred CCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCceEecCCCcchHHHHHHHHHHHHH
Confidence 9999999997777765 5699999999999999999874 1258999999999999999999999998
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=6e-39 Score=337.98 Aligned_cols=140 Identities=26% Similarity=0.550 Sum_probs=126.8
Q ss_pred CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC----cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHH
Q psy17361 2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74 (219)
Q Consensus 2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sD 74 (219)
+|++|||+|+|||+ +|||+||+|+|.. +.++ ++.|++++|+||||||||||||+|||+|||++||||++|
T Consensus 2487 fP~~iLq~s~K~t~EpP~Glkanl~r~~~~---~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sD 2563 (2695)
T 4akg_A 2487 LPAPLLQRTDRFVYEDIPGILDTVKDLWGS---QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCD 2563 (2695)
T ss_dssp CCHHHHHHSEEEEECCCCCHHHHHHHHHHH---GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHH
T ss_pred CCHHHHhccceeeecCChhHHHHHHHHhhh---HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhH
Confidence 79999999999999 9999999999942 3332 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCCCCCCCC
Q psy17361 75 LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 148 (219)
Q Consensus 75 l~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~pg~~~~ 148 (219)
|++|+++|++++++..++.|||++|||++|+|+|||||||+||||+|++|+++||++ ++ ++.++||..++
T Consensus 2564 l~~s~~~l~~~l~~~~~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~-~~~~~~~~~~~ 2633 (2695)
T 4akg_A 2564 FQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SD-NLQIVPGVRIP 2633 (2695)
T ss_dssp HHHHHHHHHHHHHHSCSCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SS-BCCSSSSCCCB
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CC-CcccCCCcCcC
Confidence 999999999999854347899999999999999999999999999999999999999 33 47788876554
No 3
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=68.17 E-value=1.8 Score=36.50 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH-HHHhcccCCCCceeC---CCCCCchHHHHHHH
Q psy17361 173 IRSVVSRAVTVHK-CYQVSSTYWRSPVDL---SGLFHPHAFLSVLK 214 (219)
Q Consensus 173 l~~l~~R~~~l~~-w~~~~~~~l~~~~~l---s~~f~P~~fl~al~ 214 (219)
+++++.+ +++ |.+. ++++-+++|+ +|.|||.|||.||-
T Consensus 27 fQ~iIl~---Lq~fWa~q-GC~i~QPyD~EvGAGT~hPaTfLRalG 68 (311)
T 3rf1_A 27 FSQMILN---LQNYWQEQ-GCAIMQPYDMPAGAGTFHPATFLRSLG 68 (311)
T ss_dssp HHHHHHH---HHHHHHTT-TCEECCCCSSCCSSGGGSHHHHTTTSS
T ss_pred HHHHHHH---HHHHHHHC-CCEEECCccccccCCCCCHHHHHHhcC
Confidence 7788877 666 5555 4666688887 79999999998873
No 4
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=25.37 E-value=22 Score=21.24 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=7.0
Q ss_pred CCCCchHH
Q psy17361 202 GLFHPHAF 209 (219)
Q Consensus 202 ~~f~P~~f 209 (219)
.||+|.+|
T Consensus 3 ~FFnpktF 10 (44)
T 3bei_A 3 TFFNPRTF 10 (44)
T ss_dssp SSSCHHHH
T ss_pred cccCCccc
Confidence 48999998
No 5
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=24.13 E-value=1.7e+02 Score=19.76 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhc---C---CCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHH
Q psy17361 73 SDLNAALNILNARLSQD---G---MGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127 (219)
Q Consensus 73 sDl~~~~~~l~~~~~~~---~---~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~ 127 (219)
++|..++.-|...+... + .+.|+.+.|+.++.. ..|..+++..+...+..++++
T Consensus 4 t~le~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~-~~~~~l~~~~~~~ev~~~i~~ 63 (100)
T 3nxa_A 4 TELEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQK-ELNHMLSDTGNRKAADKLIQN 63 (100)
T ss_dssp CHHHHHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHH-HSTTTTCSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHH-HccccccccccHHHHHHHHHH
Confidence 46777777777665432 1 367999999998855 346667776666667777765
No 6
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=22.11 E-value=38 Score=20.01 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=11.7
Q ss_pred CCCchhhHHhhhhh
Q psy17361 92 GGVKWDYIHGLLGN 105 (219)
Q Consensus 92 ~~i~w~~l~~l~~~ 105 (219)
-++||+.|+.++.+
T Consensus 4 l~VPWd~Ie~lL~~ 17 (41)
T 3vej_A 4 LTVPWDDIEALLKN 17 (41)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred eecCHHHHHHHHHH
Confidence 36999999999955
No 7
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=18.90 E-value=69 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=11.3
Q ss_pred CCchhhHHhhhhhhccccccC
Q psy17361 93 GVKWDYIHGLLGNAIYGGRID 113 (219)
Q Consensus 93 ~i~w~~l~~l~~~iiYGGrv~ 113 (219)
.++.+.++.++ +-+|+|+++
T Consensus 81 ~v~~~~~~~lL-~~~Ytg~~~ 100 (138)
T 2z8h_A 81 EVTVKGFEPLI-QFAYTAKLI 100 (138)
T ss_dssp TSCHHHHHHHH-HHHHHSCCC
T ss_pred CCCHHHHHHHH-HHhcCCCcc
Confidence 44555555544 556666664
No 8
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=15.96 E-value=93 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=16.3
Q ss_pred cccccCChHHHHHHHHHHHHhc
Q psy17361 108 YGGRIDNAQDMKVLSSYLQFYF 129 (219)
Q Consensus 108 YGGrv~d~~D~r~L~~~l~~~f 129 (219)
=-||||++.|.+.|..=+.+.+
T Consensus 43 k~GRITs~EDFK~LaRKLTh~V 64 (112)
T 2a7o_A 43 KVGRITTTEDFKHLARKLTHGV 64 (112)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHHH
Confidence 3589999999887765555544
No 9
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=15.69 E-value=46 Score=20.32 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.7
Q ss_pred CCCCCchHHHH
Q psy17361 201 SGLFHPHAFLS 211 (219)
Q Consensus 201 s~~f~P~~fl~ 211 (219)
--||+|.+|-+
T Consensus 7 ~tFFnpktFG~ 17 (49)
T 3b9f_L 7 QTFFNPRTFGS 17 (49)
T ss_dssp CCCSCHHHHCS
T ss_pred hhccCCcCCCC
Confidence 46999999954
No 10
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=13.30 E-value=33 Score=28.75 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.7
Q ss_pred CCCCCchHHHHHHH
Q psy17361 201 SGLFHPHAFLSVLK 214 (219)
Q Consensus 201 s~~f~P~~fl~al~ 214 (219)
+|.|||.|||.||-
T Consensus 43 AGT~~PaTfLRaLG 56 (298)
T 1j5w_A 43 AGTFHPATFFGSLR 56 (298)
T ss_dssp SGGGSHHHHTGGGC
T ss_pred cccCCHHHHHHhcC
Confidence 47899999998874
Done!