Query psy17361
Match_columns 219
No_of_seqs 169 out of 885
Neff 7.4
Searched_HMMs 13730
Date Fri Aug 16 20:26:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1in4a1 a.4.5.11 (A:255-329) H 34.0 11 0.00081 23.7 2.2 16 114-129 4-19 (75)
2 d2uuyb1 g.8.1.3 (B:24-74) Tryp 19.6 16 0.0012 20.3 0.8 8 60-67 3-10 (51)
3 d2hf5a1 a.39.1.5 (A:81-113) Tr 18.8 38 0.0028 17.5 2.2 31 71-105 1-31 (33)
4 d1ixsb1 a.4.5.11 (B:243-318) H 16.7 11 0.00079 23.9 -0.5 15 114-128 4-18 (76)
5 d2uuia1 f.56.1.1 (A:2-147) Leu 12.9 2E+02 0.014 19.5 5.7 34 51-87 24-57 (146)
6 d2fgea3 d.185.1.1 (A:272-539) 12.0 1.6E+02 0.012 21.7 5.4 43 70-112 121-165 (268)
7 d1z21a1 a.243.1.2 (A:42-145) Y 10.6 63 0.0046 21.2 2.0 25 107-131 38-65 (104)
8 d1ufwa_ d.58.7.1 (A:) Synaptoj 10.2 58 0.0042 21.1 1.6 15 204-218 32-46 (95)
9 d2cchb2 a.74.1.1 (B:309-432) C 9.0 1.6E+02 0.011 19.2 3.8 36 52-87 52-91 (124)
10 d1r29a_ d.42.1.1 (A:) B-cell l 8.9 1.1E+02 0.0081 19.6 2.9 20 93-113 71-90 (122)
No 1
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=34.04 E-value=11 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHhc
Q psy17361 114 NAQDMKVLSSYLQFYF 129 (219)
Q Consensus 114 d~~D~r~L~~~l~~~f 129 (219)
|..|+++|+++++.|=
T Consensus 4 d~~Dr~yL~~l~~~f~ 19 (75)
T d1in4a1 4 DEFDRKILKTIIEIYR 19 (75)
T ss_dssp CHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7899999999998753
No 2
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]}
Probab=19.56 E-value=16 Score=20.27 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=6.3
Q ss_pred CCCCCccc
Q psy17361 60 IPQGWAKF 67 (219)
Q Consensus 60 ~p~Gw~~~ 67 (219)
.|+||+.+
T Consensus 3 vpigwsep 10 (51)
T d2uuyb1 3 VPIGWSEP 10 (51)
T ss_dssp CCTTCCCC
T ss_pred ccccccch
Confidence 58888877
No 3
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=18.79 E-value=38 Score=17.50 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCchhhHHhhhhh
Q psy17361 71 NDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGN 105 (219)
Q Consensus 71 ~~sDl~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~ 105 (219)
|+.+++.|.++.+. .+.+-|..+.|+..+..
T Consensus 1 seeel~eAF~~FDk----Dg~G~Is~~EL~~vm~~ 31 (33)
T d2hf5a1 1 SEEEIREAFRVFDK----DGNGYISAAELRHVMTN 31 (33)
T ss_dssp CHHHHHHHHHHHSS----SCCSCBCHHHHHHHTTS
T ss_pred CHHHHHHHHHHhCC----CCCCcCcHHHHHHHHHH
Confidence 45577776665543 36778999999887754
No 4
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=16.65 E-value=11 Score=23.85 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHh
Q psy17361 114 NAQDMKVLSSYLQFY 128 (219)
Q Consensus 114 d~~D~r~L~~~l~~~ 128 (219)
|..|+++|+++++.|
T Consensus 4 d~~Dr~~L~~l~~~f 18 (76)
T d1ixsb1 4 EKRDREILEVLILRF 18 (76)
T ss_dssp CHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999988754
No 5
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.92 E-value=2e+02 Score=19.49 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCccccccCHHHHHHHHHHHHHHHh
Q psy17361 51 ALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLS 87 (219)
Q Consensus 51 avl~eR~~y~p~Gw~~~YeF~~sDl~~~~~~l~~~~~ 87 (219)
-|..+|++|.- +-|-+..+.||+.+.+.=.+.++
T Consensus 24 ~V~~~R~k~kv---~~p~~~g~~~fera~RaH~N~~E 57 (146)
T d2uuia1 24 QVISARRAFRV---SPPLTTGPPEFERVYRAQVNCSE 57 (146)
T ss_dssp HHHHHHHHTTC---CSSCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CCCCCCCCHHHHHHHHHHhhhHh
Confidence 48899999964 22446788999999887776655
No 6
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.01 E-value=1.6e+02 Score=21.75 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCCCch--hhHHhhhhhhcccccc
Q psy17361 70 FNDSDLNAALNILNARLSQDGMGGVKW--DYIHGLLGNAIYGGRI 112 (219)
Q Consensus 70 F~~sDl~~~~~~l~~~~~~~~~~~i~w--~~l~~l~~~iiYGGrv 112 (219)
|+...++++++.++--..+...+..|. ..+..+++..+|||.-
T Consensus 121 ~d~~~i~~~l~~~E~~~re~~~~~~~~Gl~~~~~~~~~~~~g~dp 165 (268)
T d2fgea3 121 FDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDP 165 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCS
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCCH
Confidence 778888888887774433323444553 3444577888999853
No 7
>d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H, YscH (IcrP) {Yersinia pestis [TaxId: 632]}
Probab=10.60 E-value=63 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=20.8
Q ss_pred ccccc---cCChHHHHHHHHHHHHhcCh
Q psy17361 107 IYGGR---IDNAQDMKVLSSYLQFYFSS 131 (219)
Q Consensus 107 iYGGr---v~d~~D~r~L~~~l~~~f~~ 131 (219)
.+||| |....|+--|++++++++.-
T Consensus 38 ~Fgg~ql~v~p~~D~pELra~lrEf~P~ 65 (104)
T d1z21a1 38 RFGQHQGSVVPAIDLPELRSVLQQFDSF 65 (104)
T ss_dssp HHTTCCSCCCHHHHHHHHHHHHHHHSCS
T ss_pred HhcccccCCCCccchHHHHHHHHHhCcc
Confidence 36875 77899999999999998843
No 8
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.24 E-value=58 Score=21.09 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.7
Q ss_pred CCchHHHHHHHhhhc
Q psy17361 204 FHPHAFLSVLKQHTA 218 (219)
Q Consensus 204 f~P~~fl~al~Q~~a 218 (219)
++|+.|+++|.|+.+
T Consensus 32 ~FDe~l~~~Llq~l~ 46 (95)
T d1ufwa_ 32 EFPEDLRTELMQTLG 46 (95)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh
Confidence 578999999999864
No 9
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.97 E-value=1.6e+02 Score=19.22 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHhhCCCCCcccc----ccCHHHHHHHHHHHHHHHh
Q psy17361 52 LIQERRTYIPQGWAKFY----EFNDSDLNAALNILNARLS 87 (219)
Q Consensus 52 vl~eR~~y~p~Gw~~~Y----eF~~sDl~~~~~~l~~~~~ 87 (219)
+...|+..+...|+..- .+++.|+..|+..|.....
T Consensus 52 i~lar~~l~~~~W~~~L~~~t~y~~~~l~~c~~~L~~~~~ 91 (124)
T d2cchb2 52 FHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYL 91 (124)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34556556655687652 3688899999888876543
No 10
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.88 E-value=1.1e+02 Score=19.56 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=13.4
Q ss_pred CCchhhHHhhhhhhccccccC
Q psy17361 93 GVKWDYIHGLLGNAIYGGRID 113 (219)
Q Consensus 93 ~i~w~~l~~l~~~iiYGGrv~ 113 (219)
+++-+.+..++ +-+|+|+++
T Consensus 71 ~v~~~~f~~ll-~~~Ytg~~~ 90 (122)
T d1r29a_ 71 EINPEGFNILL-DFMYTSRLN 90 (122)
T ss_dssp TSCHHHHHHHH-HHHHHSCCC
T ss_pred ccCHHHHHHHH-hhhcCCeec
Confidence 45666666655 667888775
Done!