RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17361
(219 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 143 bits (363), Expect = 1e-39
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 17 GIKRNLQRTYASWS-QTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDL 75
GI ++ + S K++ F L+WFHALI R +P G++K Y FND D
Sbjct: 2505 GILDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDF 2564
Query: 76 NAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAK 135
A L L+ + + W + + +YGG+ID +D++V++ F +
Sbjct: 2565 QFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCGS--- 2621
Query: 136 TASTPLAPGVVLPSSTNLGTPDD 158
+ + PGV +P + ++
Sbjct: 2622 -DNLQIVPGVRIPQPLLQQSEEE 2643
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 139 bits (351), Expect = 5e-38
Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 17 GIKRNLQRTYASWSQTKLNSTDQ--GRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
G+K NL T+ T+++ R F LAWFHA+IQER YIP GW KF+EFND+D
Sbjct: 2758 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817
Query: 75 LNAALNILNARLSQDGMGG-------VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
L AL+ ++ + G + W + +LG+ IYGGRIDN DM++L S+L+
Sbjct: 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877
Query: 128 YFSSNVAKTASTPLAPGVVLPSSTNLGTPDD 158
F+ + P L S L P+
Sbjct: 2878 LFTPSA-------FNPDFPLVPSIGLSVPEG 2901
Score = 42.2 bits (99), Expect = 9e-05
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 156 PDDWQSIWSGSGNPL-LYIRSVVSRAVTVHKCYQ----VSSTYWRSPVDLSGLFHPHAFL 210
P +W+ L ++I R + + + S W L GL +P A++
Sbjct: 3062 PKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVW-----LGGLLNPEAYI 3116
Query: 211 SVLKQHTAR 219
+ +Q ++
Sbjct: 3117 TATRQSASQ 3125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 65/231 (28%)
Query: 20 RNLQRTYASWSQTKLNSTDQGRALFTLAWFHAL-IQER-RTYIPQG-------------- 63
R L ++ S L T +F A +QE+ +P+
Sbjct: 7 RPLTLSHGSLEHVLLVPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 64 --WAKFYEF-----NDSDLNAALNILNARLS---QDGMGGVKWDYIHGLLGNAIYGGRID 113
KF + S + +LN L+ + G + IH L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---NDIHALAAKLLQENDTT 115
Query: 114 NAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPS----STNL-------GTPDDW--- 159
+ +++ +Y + +AK + + + + L G DD+
Sbjct: 116 LVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 160 -QSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAF 209
+ ++ + + L + ++ + ++ R+ +D +F
Sbjct: 173 LRDLYQ-TYHVL--VGDLIKFSAET--LSELI----RTTLDAEKVF-TQGL 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.019
Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 53/173 (30%)
Query: 5 TLTAKKKKI--RFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQ 62
TL +K++++ +F ++ L+ Y + + + + + ++ R YI Q
Sbjct: 70 TLLSKQEEMVQKF--VEEVLRINY-KFLMSPIKTEQRQPSM-----------MTRMYIEQ 115
Query: 63 GWAKFYEFNDSDLNAALNI--------LNARLSQ---------DGMGGV-KW-------- 96
+ +ND+ + A N+ L L + DG+ G K
Sbjct: 116 ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 97 DY-IHGLLGNAIY----GGRIDNAQDMKVLSS-YLQF--YFSSNVAKTASTPL 141
Y + + I+ +++L Q ++S +++ L
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.041
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 116 QDMKVLSSYLQFYFSSNVAKTASTP-LAPGVVLPSS 150
Q +K L + L+ Y AP + + ++
Sbjct: 20 QALKKLQASLKLY----------ADDSAPALAIKAT 45
Score = 28.8 bits (63), Expect = 0.79
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 9/31 (29%)
Query: 147 LPSSTNLGTPDDWQSIWSGSGNPLLYIRSVV 177
L +S L D S P L I++ +
Sbjct: 25 LQASLKLYADD------SA---PALAIKATM 46
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase,
geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl
diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB:
2onh_A*
Length = 543
Score = 28.2 bits (62), Expect = 2.5
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 18 IKRNLQRTYASWSQTKLNSTDQGRALFTLA-WFHALIQERRTYIPQGWAKFYEFNDSD 74
K L Y K + R L++ + F L R F F + +
Sbjct: 73 FKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLL---REHGFQVAQEVFDSFKNEE 127
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D
domain swapping, heme binding, MI processing, heme,
iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Length = 79
Score = 25.8 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 156 PDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSS 191
PD W + SG P+ R SR VT + Y + +
Sbjct: 30 PDGWIMTFHNSGVPVYLHRE--SRVVTWSRPYFLGT 63
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase,
mycobacteria, complex with CDP; HET: CDP IPE; 2.2A
{Mycobacterium smegmatis}
Length = 165
Score = 26.3 bits (59), Expect = 5.8
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 91 MGGVKWDYIHGLLG 104
+ +++D G G
Sbjct: 25 LLCLEFDDADGCAG 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.410
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,339,543
Number of extensions: 181781
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 11
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)